AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163720 MtrunA17_Chr1g0178981 96.502 972 29 2 1 971 1 968 0.0 1944
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163720 AT1G19485.1 42.283 920 397 25 56 958 3 805 0.0 634
Msa0163720 AT1G19485.2 42.283 920 397 25 56 958 3 805 0.0 634

Find 243 sgRNAs with CRISPR-Local

Find 804 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTGGTTCTCACAATT+TGG 0.152126 1_4:-42059179 None:intergenic
GTGAGAGATGGTTGTGCTTT+GGG 0.208094 1_4:+42067762 Msa0163720:CDS
ATTAAACGCAATTCTGCTTT+TGG 0.218518 1_4:-42067350 None:intergenic
CTCTAATATTGATAAGAAAA+TGG 0.221187 1_4:+42067823 Msa0163720:CDS
TGGTTCATCTTATCACAAAA+TGG 0.221693 1_4:+42058737 Msa0163720:CDS
TATGGTGTCTTCTAAATATC+AGG 0.232318 1_4:+42058793 Msa0163720:CDS
CCTCATGATTATTTACTTGC+TGG 0.237869 1_4:+42062110 Msa0163720:CDS
AATAATGGCCTACTTGTATC+TGG 0.238881 1_4:-42059473 None:intergenic
TCTTTGTGATGGTGATAATA+TGG 0.240883 1_4:+42067502 Msa0163720:CDS
TTATGCAATGCTGCCATCTT+AGG 0.244199 1_4:-42067713 None:intergenic
GATAATGAAAAGCCGGATTC+TGG 0.244429 1_4:+42067668 Msa0163720:CDS
GACATGAAGGCCTCAAGTTT+TGG 0.251482 1_4:+42064495 Msa0163720:CDS
TGTATTCGCAGCAGCTTTCT+TGG 0.251698 1_4:-42059315 None:intergenic
ACCTTTCACAAAAGGGATTA+AGG 0.259506 1_4:+42055751 Msa0163720:five_prime_UTR
GTATGCAGAAGCAGCTTTCT+TGG 0.268262 1_4:-42059387 None:intergenic
AGTGAGAGATGGTTGTGCTT+TGG 0.288593 1_4:+42067761 Msa0163720:CDS
ACTCTCTTGTTTGCAATTGC+AGG 0.291928 1_4:-42055848 None:intergenic
CCTCTTTCTTGCAGCTTCAA+TGG 0.294909 1_4:-42067295 None:intergenic
GCATTCTTTCCCTTTGTATT+CGG 0.294913 1_4:-42059365 None:intergenic
ATTAGGTTTACTTACGGAAT+TGG 0.296469 1_4:+42056766 Msa0163720:CDS
GGGCTATCTTGCTGTCTTGT+TGG 0.306280 1_4:+42059691 Msa0163720:CDS
CGTATTCATCTTATGCCATT+TGG 0.307057 1_4:+42066370 Msa0163720:CDS
TATTTACATATTCACATCTA+AGG 0.307570 1_4:-42067897 None:intergenic
TGTATTCGGAGCAGCTTTCT+TGG 0.307885 1_4:-42059351 None:intergenic
GGCTATCTTGCTGTCTTGTT+GGG 0.307911 1_4:+42059692 Msa0163720:CDS
CCAGACTGTAAATGATTCTC+TGG 0.312361 1_4:-42066120 None:intergenic
AATATCCATCTAAAAGCATT+AGG 0.316447 1_4:+42056749 Msa0163720:CDS
CAGGGTTTGAATATCAGTTC+TGG 0.319518 1_4:+42055809 Msa0163720:five_prime_UTR
AAAATGGGTGCCTCACTTAC+TGG 0.325896 1_4:+42058753 Msa0163720:CDS
TTCTTCTTCCCCACAGAGTT+TGG 0.336068 1_4:-42056107 None:intergenic
TTTCTGCTACAGCTCAGTTT+TGG 0.338281 1_4:-42067578 None:intergenic
AACATTGAGCATTTGAATAC+AGG 0.343917 1_4:-42061074 None:intergenic
ATTTCTCCAGATGTAGTTCC+TGG 0.344586 1_4:+42059239 Msa0163720:CDS
CTCTTTCTTGCAGCTTCAAT+GGG 0.352650 1_4:-42067294 None:intergenic
GAACAGTAAGAGGAACAAAT+TGG 0.352749 1_4:-42059193 None:intergenic
GAAATAAATTCAGCTGAATC+TGG 0.353877 1_4:-42059221 None:intergenic
CTGAGGAAGCATTGTCTTCT+CGG 0.361974 1_4:+42067540 Msa0163720:CDS
GCAGAGGTGCTGTGCAAATA+TGG 0.367593 1_4:+42058775 Msa0163720:CDS
TGCAGCCTTCGCCAAGCTAA+TGG 0.372323 1_4:-42066283 None:intergenic
TAAATAGTGTGGCAATAGTT+AGG 0.374286 1_4:-42055892 None:intergenic
CTTGTTGGGCAATGGATCTC+TGG 0.375077 1_4:+42059706 Msa0163720:CDS
TTCTCACACTGAATCAATAA+TGG 0.377014 1_4:-42059488 None:intergenic
CTTTCCAGTGTATATCGTTC+CGG 0.378783 1_4:-42066322 None:intergenic
ATACTTGGATTCTTGAGGTT+TGG 0.380840 1_4:-42057050 None:intergenic
GTGTATATCGTTCCGGTGAC+AGG 0.384153 1_4:-42066315 None:intergenic
GCCCATGCAACTGTTCTAAT+AGG 0.389486 1_4:-42063411 None:intergenic
GTAGGTTGGATATTAATCAT+AGG 0.390058 1_4:+42059435 Msa0163720:CDS
GGGCATTTACCTTTCACAAA+AGG 0.395838 1_4:+42055743 Msa0163720:five_prime_UTR
ACTATTAAGTTAGAAGTCTC+TGG 0.395932 1_4:-42064464 None:intergenic
CCAGAGAATCATTTACAGTC+TGG 0.402777 1_4:+42066120 Msa0163720:CDS
GCGTTGTTTATCAACAGAAC+AGG 0.403768 1_4:+42055773 Msa0163720:five_prime_UTR
GTTCAAGTGTCACCGATAAC+AGG 0.413037 1_4:+42066396 Msa0163720:CDS
CCGAAAACAGTACCTGTTAT+CGG 0.414337 1_4:-42066408 None:intergenic
ACAAAGCCTATACTTTGTTT+CGG 0.415181 1_4:+42063375 Msa0163720:CDS
GGGAAAGGAGAGTTTGATAC+TGG 0.422684 1_4:-42067274 None:intergenic
GGCATTTACCTTTCACAAAA+GGG 0.424513 1_4:+42055744 Msa0163720:five_prime_UTR
TGATGGTGATAATATGGGTT+TGG 0.424625 1_4:+42067508 Msa0163720:CDS
TTAGGTTTACTTACGGAATT+GGG 0.426191 1_4:+42056767 Msa0163720:CDS
ATATCAAACAAAGAAACCTT+AGG 0.426697 1_4:-42056046 None:intergenic
GATGCTTGAGGTTCCAATAC+AGG 0.430718 1_4:-42059539 None:intergenic
AGGGTTTGAATATCAGTTCT+GGG 0.431046 1_4:+42055810 Msa0163720:five_prime_UTR
GCTGTTGCTGCTCATCCGCC+TGG 0.432574 1_4:+42058717 Msa0163720:CDS
CTTTGTGATGGTGATAATAT+GGG 0.434640 1_4:+42067503 Msa0163720:CDS
ATAATGAAAAGCCGGATTCT+GGG 0.437268 1_4:+42067669 Msa0163720:CDS
CTTGCTGTCTTGTTGGGCAA+TGG 0.437681 1_4:+42059698 Msa0163720:CDS
GAACTGCCAGGAACTACATC+TGG 0.439083 1_4:-42059245 None:intergenic
GTTCTGTATGGGCATTAGAT+TGG 0.440759 1_4:+42057265 Msa0163720:CDS
GCAAGAGCTGTGCTTTCAGC+TGG 0.441680 1_4:-42067608 None:intergenic
ACCACATGGTAGCCCTGTAT+TGG 0.442858 1_4:+42059526 Msa0163720:CDS
GCATCTGGTAGTGTCTCAAA+TGG 0.442876 1_4:+42059053 Msa0163720:CDS
AGGTGGCATGGGATGTCAAA+TGG 0.446867 1_4:+42059627 Msa0163720:CDS
TCACATTTAATTGAACAATC+AGG 0.451414 1_4:-42057309 None:intergenic
TAATGGACTTGTACGTTGTC+AGG 0.453115 1_4:+42067790 Msa0163720:CDS
TTACTTGCTGGCTGCCATGA+TGG 0.453345 1_4:+42062122 Msa0163720:CDS
AGCCTATACTTTGTTTCGGT+GGG 0.453635 1_4:+42063379 Msa0163720:CDS
TGCAAAAGGAGGAGCAACTT+GGG 0.454385 1_4:+42057023 Msa0163720:CDS
TCAGGCTCCCCATGCATCCT+AGG 0.455090 1_4:-42057291 None:intergenic
TTCATCTGCCACTGTTCCTA+AGG 0.455578 1_4:+42056846 Msa0163720:CDS
ATTATCACTAACCCTTCAAA+AGG 0.457036 1_4:-42063435 None:intergenic
ATGCTACTCTTACCTGAAAA+CGG 0.460532 1_4:-42066718 None:intergenic
CGAGAATTTCTTTGAAGACA+TGG 0.460588 1_4:+42056075 Msa0163720:CDS
AAAAGCATTAGGTTTACTTA+CGG 0.463447 1_4:+42056760 Msa0163720:CDS
AGGAGCCTCAGAGGACGAAA+TGG 0.465031 1_4:-42066088 None:intergenic
CGACTTCCATTCTTTCTATG+TGG 0.466917 1_4:+42067211 Msa0163720:CDS
CCACCTTTCCATTATGAGCT+AGG 0.467563 1_4:-42059610 None:intergenic
ATGCAAAAGGAGGAGCAACT+TGG 0.467583 1_4:+42057022 Msa0163720:CDS
TCCTCATGCAAGCATCGAAT+GGG 0.467596 1_4:+42059671 Msa0163720:CDS
GTGTCATGCCTAGCTCATAA+TGG 0.467799 1_4:+42059602 Msa0163720:CDS
ATCATATCTCCCCGGGAAGA+AGG 0.467886 1_4:+42058833 Msa0163720:CDS
GTCCACCTAGGTAAAGTAAA+GGG 0.472023 1_4:+42055723 Msa0163720:five_prime_UTR
GCTCTCAGTGCATGAGGAAG+AGG 0.476909 1_4:-42061002 None:intergenic
GGTTCATCTTATCACAAAAT+GGG 0.477171 1_4:+42058738 Msa0163720:CDS
ACTGATCCACATAGAAAGAA+TGG 0.482260 1_4:-42067217 None:intergenic
TGAGAGATGGTTGTGCTTTG+GGG 0.482698 1_4:+42067763 Msa0163720:CDS
GGGCATTAGATTGGTGTCCT+AGG 0.483270 1_4:+42057274 Msa0163720:CDS
TCTGGAAGTTGAACAGTAAG+AGG 0.486423 1_4:-42059203 None:intergenic
CTCTTTGATATTAAATAGTG+TGG 0.488495 1_4:-42055903 None:intergenic
CTATCCACTGCTATTACAGT+TGG 0.488965 1_4:-42059005 None:intergenic
ATCTTAGGAGGAAAGACTTC+GGG 0.492038 1_4:-42067698 None:intergenic
TTCCCCACAGAGTTTGGCAA+TGG 0.498095 1_4:-42056101 None:intergenic
TCTTGTTGCAAGAAGTAGGT+TGG 0.499166 1_4:+42059421 Msa0163720:CDS
CCATTGAAGCTGCAAGAAAG+AGG 0.499192 1_4:+42067295 Msa0163720:CDS
TCGGGAGTAGTCCCAGAATC+CGG 0.499534 1_4:-42067680 None:intergenic
ATTGATTCAGTGTGAGAATG+AGG 0.501894 1_4:+42059493 Msa0163720:CDS
TGAATGTTGGAGGTTCTGTA+TGG 0.503920 1_4:+42057253 Msa0163720:CDS
ACAAATCGATAGAAATAAAG+AGG 0.505265 1_4:+42058889 Msa0163720:CDS
TGTCCACCTAGGTAAAGTAA+AGG 0.506559 1_4:+42055722 Msa0163720:five_prime_UTR
GAATCATTTACAGTCTGGAT+TGG 0.508798 1_4:+42066125 Msa0163720:CDS
TGATTCTCTGGGAAGGTTGG+AGG 0.509208 1_4:-42066108 None:intergenic
TCTTGCAGCTTCAATGGGAA+AGG 0.509900 1_4:-42067289 None:intergenic
CGAAGTCTTTCCTCCTAAGA+TGG 0.511144 1_4:+42067700 Msa0163720:CDS
TTCCTATTAGAACAGTTGCA+TGG 0.511742 1_4:+42063409 Msa0163720:CDS
AAGAAACAACCTTGGTTGCA+TGG 0.512538 1_4:+42066342 Msa0163720:CDS
TGCAATGCTGCCATCTTAGG+AGG 0.515229 1_4:-42067710 None:intergenic
CTCATAATGGAAAGGTGGCA+TGG 0.517043 1_4:+42059615 Msa0163720:CDS
TGAGGAAGCATTGTCTTCTC+GGG 0.518917 1_4:+42067541 Msa0163720:CDS
TGACACTTGAACACTCCAAA+TGG 0.520023 1_4:-42066385 None:intergenic
AACAATGAAAACCATTAGCT+TGG 0.520423 1_4:+42066272 Msa0163720:CDS
TCAACTCCGGGAGTATTTGT+CGG 0.520616 1_4:-42067647 None:intergenic
TATCAAACAAAGAAACCTTA+GGG 0.521010 1_4:-42056045 None:intergenic
ACAGCTCTTGCTTGTAGAGA+TGG 0.522738 1_4:+42067620 Msa0163720:CDS
AAATGATTCTCTGGGAAGGT+TGG 0.522935 1_4:-42066111 None:intergenic
TAGGTTGGATATTAATCATA+GGG 0.524008 1_4:+42059436 Msa0163720:CDS
AAACTCTTGTTGCAAGAAGT+AGG 0.524383 1_4:+42059417 Msa0163720:CDS
AAAACGCTATCATCTCTTCA+AGG 0.525511 1_4:-42067846 None:intergenic
AAGCCTATACTTTGTTTCGG+TGG 0.531447 1_4:+42063378 Msa0163720:CDS
CTTAGGGTTAGCACCACTGC+TGG 0.532612 1_4:-42056029 None:intergenic
ATTGGTGTCCTAGGATGCAT+GGG 0.532952 1_4:+42057283 Msa0163720:CDS
TTCTTTCTAGGCCTTCCTCT+AGG 0.533374 1_4:-42058912 None:intergenic
CAAATTATACCGTTCCATCA+TGG 0.534327 1_4:-42062136 None:intergenic
TTCCTCATGCAAGCATCGAA+TGG 0.535078 1_4:+42059670 Msa0163720:CDS
GGGACCAAGTACATAGCATC+TGG 0.536684 1_4:+42059038 Msa0163720:CDS
ACTACCAGATGCTATGTACT+TGG 0.537317 1_4:-42059042 None:intergenic
GATTGGTGTCCTAGGATGCA+TGG 0.541625 1_4:+42057282 Msa0163720:CDS
CGGAGTTGATAATGAAAAGC+CGG 0.542156 1_4:+42067661 Msa0163720:CDS
CAGCAGTGGTGCTAACCCTA+AGG 0.543146 1_4:+42056030 Msa0163720:CDS
TCCTATTAGAACAGTTGCAT+GGG 0.543628 1_4:+42063410 Msa0163720:CDS
AAACCATACTTGGATTCTTG+AGG 0.544459 1_4:-42057055 None:intergenic
TCAGGCATGGTTGCATATTG+TGG 0.547666 1_4:+42066677 Msa0163720:intron
GCAAATGACCTCCCTGTCAC+CGG 0.549534 1_4:+42066303 Msa0163720:CDS
AGAGACTTTGTGATGAATGT+TGG 0.551861 1_4:+42057240 Msa0163720:intron
AAAGCTGCTGCGAATACAAA+GGG 0.552131 1_4:+42059320 Msa0163720:CDS
TTTGTTGCAGCTCTTTGTGA+TGG 0.553499 1_4:+42067491 Msa0163720:intron
AAAGCTGCTCCGAATACAAA+GGG 0.553544 1_4:+42059356 Msa0163720:CDS
ATAATGGCCTACTTGTATCT+GGG 0.555195 1_4:-42059472 None:intergenic
CATCTGGTAGTGTCTCAAAT+GGG 0.555891 1_4:+42059054 Msa0163720:CDS
TGCTGGCTGCCATGATGGAA+CGG 0.557319 1_4:+42062127 Msa0163720:CDS
TTAAATGTGCAGAGAATGGA+AGG 0.560081 1_4:+42056720 Msa0163720:intron
GCTACAGCGGCAAATGATGA+AGG 0.560213 1_4:+42055992 Msa0163720:CDS
GTTGCATATTGTGGTGCAGA+TGG 0.562993 1_4:+42066686 Msa0163720:CDS
GAGAGCAGTTTATACGCAGA+AGG 0.563777 1_4:+42061019 Msa0163720:CDS
CATCTTAGGAGGAAAGACTT+CGG 0.564444 1_4:-42067699 None:intergenic
GCCTATACTTTGTTTCGGTG+GGG 0.564923 1_4:+42063380 Msa0163720:CDS
AATTCTTCATCTAAATGTGA+TGG 0.566247 1_4:+42063216 Msa0163720:CDS
GTTGTAGCCCAGATACAAGT+AGG 0.566508 1_4:+42059465 Msa0163720:CDS
CGTTGTTTATCAACAGAACA+GGG 0.567059 1_4:+42055774 Msa0163720:five_prime_UTR
GACTTTGTGATGAATGTTGG+AGG 0.568156 1_4:+42057243 Msa0163720:CDS
TCCCCACCGAAACAAAGTAT+AGG 0.572203 1_4:-42063381 None:intergenic
AGCAGTTTATACGCAGAAGG+AGG 0.573083 1_4:+42061022 Msa0163720:CDS
TGCTGATGATTCTGCTACAG+CGG 0.574927 1_4:+42055979 Msa0163720:CDS
ACACCATTGCCAAACTCTGT+GGG 0.575153 1_4:+42056098 Msa0163720:CDS
AGCAAGTAAATAATCATGAG+GGG 0.577811 1_4:-42062108 None:intergenic
CAGCATTGCATAAAGTGAGA+TGG 0.578502 1_4:+42067723 Msa0163720:CDS
AAATAAAGAGGCCTAGAGGA+AGG 0.580422 1_4:+42058901 Msa0163720:CDS
TGCCCTTTACTTTACCTAGG+TGG 0.580871 1_4:-42055725 None:intergenic
TGATGTTCATCAGAACTGCC+AGG 0.583511 1_4:-42059257 None:intergenic
GGTGCCTCACTTACTGGCAG+AGG 0.584837 1_4:+42058759 Msa0163720:CDS
ACTGACCACTCCACTGTCAG+TGG 0.585703 1_4:-42062080 None:intergenic
TCATAATGGAAAGGTGGCAT+GGG 0.586605 1_4:+42059616 Msa0163720:CDS
TGTATATCGTTCCGGTGACA+GGG 0.587304 1_4:-42066314 None:intergenic
AAGAAGTATCATATCTCCCC+GGG 0.588430 1_4:+42058826 Msa0163720:CDS
CAGCAAGTAAATAATCATGA+GGG 0.589131 1_4:-42062109 None:intergenic
GAATCCAACTGTAATAGCAG+TGG 0.589763 1_4:+42059001 Msa0163720:CDS
GAAAGCTGCTGCGAATACAA+AGG 0.590265 1_4:+42059319 Msa0163720:CDS
CAGTGGATAGTACAAATTGT+GGG 0.590541 1_4:+42059018 Msa0163720:CDS
ATGGTGTCTTCTAAATATCA+GGG 0.592032 1_4:+42058794 Msa0163720:CDS
CTCAAGACCTAAAATTTACG+TGG 0.594134 1_4:-42067871 None:intergenic
GAAAGCTGCTCCGAATACAA+AGG 0.594903 1_4:+42059355 Msa0163720:CDS
GACACCATTGCCAAACTCTG+TGG 0.595970 1_4:+42056097 Msa0163720:CDS
CAGACTGTAAATGATTCTCT+GGG 0.598089 1_4:-42066119 None:intergenic
ATGCTTGAGGTTCCAATACA+GGG 0.598484 1_4:-42059538 None:intergenic
GGGTTTGGAATCTGTATCTG+AGG 0.600826 1_4:+42067523 Msa0163720:CDS
TTATTTGAAATTGTCCACCT+AGG 0.601577 1_4:+42055711 Msa0163720:five_prime_UTR
GAAAACCATTAGCTTGGCGA+AGG 0.602327 1_4:+42066278 Msa0163720:CDS
GCAAATGATGAAGGTGGTGG+TGG 0.602662 1_4:+42056001 Msa0163720:CDS
TTGTATCAATTGCAGGTGGG+AGG 0.602833 1_4:+42060977 Msa0163720:intron
TCAGCATAATATGCAAAAGG+AGG 0.605517 1_4:+42057012 Msa0163720:intron
AAACAAGAGAGTAATGGAAG+AGG 0.607256 1_4:+42055859 Msa0163720:exon
GAAGAAGTATCATATCTCCC+CGG 0.607569 1_4:+42058825 Msa0163720:CDS
AAATGCCCTTTACTTTACCT+AGG 0.608444 1_4:-42055728 None:intergenic
ATAGTAACCGCAGGACATGA+AGG 0.613215 1_4:+42064482 Msa0163720:CDS
GTCACCGGAACGATATACAC+TGG 0.613239 1_4:+42066318 Msa0163720:CDS
CTGTAAATGATTCTCTGGGA+AGG 0.613421 1_4:-42066115 None:intergenic
GAGGAATCAAGATTGCTAAG+AGG 0.614969 1_4:-42059653 None:intergenic
TCAGCTAACAACTAAATCAG+TGG 0.616202 1_4:+42067168 Msa0163720:intron
CCAGCAAGTAAATAATCATG+AGG 0.616229 1_4:-42062110 None:intergenic
AATTGCAAACAAGAGAGTAA+TGG 0.617423 1_4:+42055853 Msa0163720:exon
CCTAGCTCATAATGGAAAGG+TGG 0.620737 1_4:+42059610 Msa0163720:CDS
GCAGTTTATACGCAGAAGGA+GGG 0.621415 1_4:+42061023 Msa0163720:CDS
AGCACCTCTGCCAGTAAGTG+AGG 0.622420 1_4:-42058763 None:intergenic
CAGAACTGATATTCAAACCC+TGG 0.624538 1_4:-42055808 None:intergenic
GCAGTGGATAGTACAAATTG+TGG 0.626003 1_4:+42059017 Msa0163720:CDS
GAGAGATGGTTGTGCTTTGG+GGG 0.626750 1_4:+42067764 Msa0163720:CDS
ATGCCTAGCTCATAATGGAA+AGG 0.628963 1_4:+42059607 Msa0163720:CDS
TGATTGTTCAATTAAATGTG+AGG 0.630368 1_4:+42057311 Msa0163720:CDS
TTAACAAGGGTAGTGAGAGA+TGG 0.634556 1_4:+42067750 Msa0163720:CDS
GCCCATTCGATGCTTGCATG+AGG 0.635290 1_4:-42059672 None:intergenic
TAAACTGCTCTCAGTGCATG+AGG 0.635449 1_4:-42061008 None:intergenic
GTAATCCATTTCGTCCTCTG+AGG 0.636836 1_4:+42066083 Msa0163720:intron
CTTGAGGCCTTCATGTCCTG+CGG 0.638879 1_4:-42064489 None:intergenic
ATGTGGATCAGTGACTGAAG+AGG 0.639441 1_4:+42067228 Msa0163720:CDS
GCTAGGCATGACACAACTCT+AGG 0.640886 1_4:-42059593 None:intergenic
TCACAGCATTCCACTGACAG+TGG 0.641311 1_4:+42062070 Msa0163720:intron
GAATGTTGGAGGTTCTGTAT+GGG 0.641333 1_4:+42057254 Msa0163720:CDS
TCTAACTTAATAGTAACCGC+AGG 0.643606 1_4:+42064473 Msa0163720:CDS
GGTGCACCGACAAATACTCC+CGG 0.644237 1_4:+42067641 Msa0163720:CDS
ATGGGACAAGTAGATGCTTG+AGG 0.647867 1_4:-42059551 None:intergenic
GCAAAAGGAGGAGCAACTTG+GGG 0.648508 1_4:+42057024 Msa0163720:CDS
ACACTGGAAAGAAACAACCT+TGG 0.652297 1_4:+42066334 Msa0163720:CDS
ATAGAAATAAAGAGGCCTAG+AGG 0.655432 1_4:+42058897 Msa0163720:CDS
GTGAGATGGAACATTAACAA+GGG 0.656102 1_4:+42067737 Msa0163720:CDS
GAAGGTTGGAGGAGCCTCAG+AGG 0.658311 1_4:-42066097 None:intergenic
TGGATTGGCAGTCAAAGCCA+AGG 0.660146 1_4:+42066140 Msa0163720:CDS
AGTGAGATGGAACATTAACA+AGG 0.663871 1_4:+42067736 Msa0163720:CDS
TACGTAGTACCATGCAACCA+AGG 0.666142 1_4:-42066351 None:intergenic
GCGGCAAATGATGAAGGTGG+TGG 0.666480 1_4:+42055998 Msa0163720:CDS
GCATTCCACTGACAGTGGAG+TGG 0.668981 1_4:+42062075 Msa0163720:intron
GGTGGTGGTAGTACCAGCAG+TGG 0.670189 1_4:+42056016 Msa0163720:CDS
GCAAGTAAATAATCATGAGG+GGG 0.677289 1_4:-42062107 None:intergenic
TGGCATGGGATGTCAAATGG+AGG 0.678240 1_4:+42059630 Msa0163720:CDS
GACTTGTACCTTAGGAACAG+TGG 0.679559 1_4:-42056854 None:intergenic
CACCATTGCCAAACTCTGTG+GGG 0.682548 1_4:+42056099 Msa0163720:CDS
TGAAACGTGGCAGCTTACAG+AGG 0.684971 1_4:+42061096 Msa0163720:CDS
TCCAATACAGGGCTACCATG+TGG 0.685481 1_4:-42059527 None:intergenic
TTTATATGTAGGTTGCTCTG+TGG 0.688819 1_4:+42063181 Msa0163720:intron
GAGGCAAATCATCAACCACA+TGG 0.705993 1_4:+42059512 Msa0163720:CDS
AAATGCTCAATGTTGAAACG+TGG 0.713740 1_4:+42061083 Msa0163720:CDS
TTGGTGTCCTAGGATGCATG+GGG 0.719461 1_4:+42057284 Msa0163720:CDS
ACCGTAGGTCCCAAAACTTG+AGG 0.731840 1_4:-42064505 None:intergenic
TTGTGATAAGATGAACCAGG+CGG 0.737973 1_4:-42058732 None:intergenic
ACAGCGGCAAATGATGAAGG+TGG 0.745146 1_4:+42055995 Msa0163720:CDS
ATATCGTTCCGGTGACAGGG+AGG 0.770381 1_4:-42066311 None:intergenic
ACAGTGGCAGATGAAAACTG+AGG 0.800494 1_4:-42056838 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATTAGAGTAAAATAT+AGG - chr1_4:42056882-42056901 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTACTCAA+GGG - chr1_4:42061692-42061711 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTACTCA+AGG - chr1_4:42061693-42061712 None:intergenic 10.0%
!!! ATTCTAATTTTTAACATTAA+TGG - chr1_4:42061898-42061917 None:intergenic 10.0%
!!! AAATAAATTGTTTTATATGT+AGG + chr1_4:42063170-42063189 Msa0163720:intron 10.0%
!!! TAAGTATATATTTTGCTTTT+AGG + chr1_4:42056931-42056950 Msa0163720:intron 15.0%
!! TAAAAGGATTTAGATTTAAA+TGG + chr1_4:42058017-42058036 Msa0163720:intron 15.0%
!! TTTACTACATATATGAATAT+AGG - chr1_4:42058591-42058610 None:intergenic 15.0%
!! ACAAATTAACAATTTATCAA+TGG - chr1_4:42060844-42060863 None:intergenic 15.0%
!!! TAATTTTTAACATTAATGGT+GGG - chr1_4:42061894-42061913 None:intergenic 15.0%
!! AAATTAGAATCACTTAAAAA+AGG + chr1_4:42061908-42061927 Msa0163720:intron 15.0%
!! ATTTATGATTTATATCACTT+AGG - chr1_4:42062292-42062311 None:intergenic 15.0%
!! TAAGTGATATAAATCATAAA+TGG + chr1_4:42062291-42062310 Msa0163720:intron 15.0%
!! TATCTTATATTGTATAAAAG+CGG + chr1_4:42062451-42062470 Msa0163720:intron 15.0%
!!! CAGTAATGTTTTTATTTTTA+TGG - chr1_4:42063858-42063877 None:intergenic 15.0%
!! AATATAAATTATAGCAGTTA+TGG - chr1_4:42063882-42063901 None:intergenic 15.0%
!! AATAAGTTAAATAAATCATC+TGG - chr1_4:42064098-42064117 None:intergenic 15.0%
!! AATACTATTAAACATTTCAA+AGG - chr1_4:42064416-42064435 None:intergenic 15.0%
!! TTGAAATGTTTAATAGTATT+TGG + chr1_4:42064416-42064435 Msa0163720:intron 15.0%
!!! TATGTTTTGAGTTTAAATTT+GGG + chr1_4:42064901-42064920 Msa0163720:intron 15.0%
!! TTTAAATTTGAAAAAGAACA+TGG + chr1_4:42065030-42065049 Msa0163720:intron 15.0%
!!! GTCATAATTATTTTTATTCT+GGG - chr1_4:42067128-42067147 None:intergenic 15.0%
!!! AGTCATAATTATTTTTATTC+TGG - chr1_4:42067129-42067148 None:intergenic 15.0%
!! TCTTCAAGTAAATATTTGAT+TGG - chr1_4:42056532-42056551 None:intergenic 20.0%
!! AATCAAATATTTACTTGAAG+AGG + chr1_4:42056531-42056550 Msa0163720:intron 20.0%
!! ATCAAATATTTACTTGAAGA+GGG + chr1_4:42056532-42056551 Msa0163720:intron 20.0%
!! AACCAAAAAAAGAAATTAAG+GGG - chr1_4:42056695-42056714 None:intergenic 20.0%
!! CAACCAAAAAAAGAAATTAA+GGG - chr1_4:42056696-42056715 None:intergenic 20.0%
!! TCAACCAAAAAAAGAAATTA+AGG - chr1_4:42056697-42056716 None:intergenic 20.0%
!! AAATTAGAGTAAAATATAGG+AGG - chr1_4:42056879-42056898 None:intergenic 20.0%
!! TTTATTCAATGACATTTCTA+TGG + chr1_4:42057101-42057120 Msa0163720:intron 20.0%
!!! TATTGTTCTTTTAAGAGTTA+AGG + chr1_4:42057555-42057574 Msa0163720:intron 20.0%
!!! ATTGTTCTTTTAAGAGTTAA+GGG + chr1_4:42057556-42057575 Msa0163720:intron 20.0%
!! TTCTTAAATTGTGTTGAATT+TGG - chr1_4:42057714-42057733 None:intergenic 20.0%
!!! TCAACACAATTTAAGAATTT+TGG + chr1_4:42057717-42057736 Msa0163720:intron 20.0%
!!! TTTCATTGTTATTTGTTTCA+TGG - chr1_4:42057745-42057764 None:intergenic 20.0%
!!! AGCACATATTTTTGAAAAAA+TGG + chr1_4:42057920-42057939 Msa0163720:intron 20.0%
!!! TTTTATTCCAAACTGTTAAA+AGG + chr1_4:42058001-42058020 Msa0163720:intron 20.0%
!! TTTATCACTAGAAATGATTT+AGG + chr1_4:42058040-42058059 Msa0163720:intron 20.0%
!!! TTTTGTACTAAATAGTATAC+CGG + chr1_4:42058153-42058172 Msa0163720:intron 20.0%
!! CATAATTAACAAAAGGATTT+AGG - chr1_4:42058418-42058437 None:intergenic 20.0%
!!! AATCCTTTTGTTAATTATGA+TGG + chr1_4:42058419-42058438 Msa0163720:intron 20.0%
!!! TTTTACTCTTGTATGTAATA+CGG - chr1_4:42059106-42059125 None:intergenic 20.0%
!! TTACATACAAGAGTAAAAAA+AGG + chr1_4:42059108-42059127 Msa0163720:CDS 20.0%
!!! ACAACAATTTTCTAATACAA+AGG + chr1_4:42059283-42059302 Msa0163720:CDS 20.0%
!!! CAACAATTTTCTAATACAAA+GGG + chr1_4:42059284-42059303 Msa0163720:CDS 20.0%
!! TATCATCTTTATTAGATTTG+AGG + chr1_4:42059837-42059856 Msa0163720:intron 20.0%
!! TTTACTTTATGATAAGCATT+TGG - chr1_4:42060072-42060091 None:intergenic 20.0%
!! TTCATTAAAATTTCAGTGAT+TGG + chr1_4:42060863-42060882 Msa0163720:intron 20.0%
!! AAATCACAGATAGTAATAAA+AGG - chr1_4:42060911-42060930 None:intergenic 20.0%
!! AACAAATTTGTAATAGACAT+TGG + chr1_4:42061424-42061443 Msa0163720:intron 20.0%
!! ATAAGAATACTTTGTAGAAA+TGG + chr1_4:42061615-42061634 Msa0163720:intron 20.0%
!!! TTTATTTAAATTTTTTGCCC+AGG + chr1_4:42061776-42061795 Msa0163720:intron 20.0%
!!! CTAATTTTTAACATTAATGG+TGG - chr1_4:42061895-42061914 None:intergenic 20.0%
!!! TAATATATGTTTTTCTAGAC+TGG + chr1_4:42062015-42062034 Msa0163720:intron 20.0%
!! AGGTAAATTTCATTTAAGAA+AGG - chr1_4:42062194-42062213 None:intergenic 20.0%
!!! AGGTAAAATTTTTGTAAGAT+AGG + chr1_4:42062247-42062266 Msa0163720:intron 20.0%
!! TATAGAATTTGTCTTTGATT+TGG + chr1_4:42062374-42062393 Msa0163720:intron 20.0%
!!! TGCATGATATTTTATTATGA+AGG + chr1_4:42062985-42063004 Msa0163720:intron 20.0%
!! GATACAGAATTATTACATAA+AGG - chr1_4:42063063-42063082 None:intergenic 20.0%
!!! ATGTTTTTATTTTTATGGCT+TGG - chr1_4:42063853-42063872 None:intergenic 20.0%
!! TATATTTGTTCTCTAATAAG+AGG + chr1_4:42063896-42063915 Msa0163720:intron 20.0%
!! AGTAATCTTCATAAAAACAA+GGG - chr1_4:42064307-42064326 None:intergenic 20.0%
!! AAGTAATCTTCATAAAAACA+AGG - chr1_4:42064308-42064327 None:intergenic 20.0%
!!! TCTTTGTATTTGTTGAAATT+TGG + chr1_4:42064579-42064598 Msa0163720:intron 20.0%
!!! CTTTGTATTTGTTGAAATTT+GGG + chr1_4:42064580-42064599 Msa0163720:intron 20.0%
!!! TAATAAAAAAAGCGTATAGA+CGG - chr1_4:42064749-42064768 None:intergenic 20.0%
!!! GTATGTTTTGAGTTTAAATT+TGG + chr1_4:42064900-42064919 Msa0163720:intron 20.0%
!! TAAATCTACACCATAATTAA+AGG - chr1_4:42065002-42065021 None:intergenic 20.0%
!!! AACAACCATATTTTTTTGAA+GGG - chr1_4:42065069-42065088 None:intergenic 20.0%
!!! TAACAACCATATTTTTTTGA+AGG - chr1_4:42065070-42065089 None:intergenic 20.0%
!! TCAAAAAAATATGGTTGTTA+AGG + chr1_4:42065070-42065089 Msa0163720:intron 20.0%
!!! TATTGCAAATTTAAAACTGA+TGG + chr1_4:42065494-42065513 Msa0163720:intron 20.0%
!! ATAGTTGTAATTTCTAATCA+AGG - chr1_4:42065972-42065991 None:intergenic 20.0%
!!! ACAGTTTTAAAAGAAAATGA+GGG - chr1_4:42066972-42066991 None:intergenic 20.0%
!!! TAATTATTTTTATTCTGGGA+TGG - chr1_4:42067124-42067143 None:intergenic 20.0%
!! CTCTAATATTGATAAGAAAA+TGG + chr1_4:42067823-42067842 Msa0163720:CDS 20.0%
!! TATTTACATATTCACATCTA+AGG - chr1_4:42067900-42067919 None:intergenic 20.0%
! CTCTTTGATATTAAATAGTG+TGG - chr1_4:42055906-42055925 None:intergenic 25.0%
! TATCAAACAAAGAAACCTTA+GGG - chr1_4:42056048-42056067 None:intergenic 25.0%
! ATATCAAACAAAGAAACCTT+AGG - chr1_4:42056049-42056068 None:intergenic 25.0%
! ATCATACCTTAAAAAAGTGA+CGG - chr1_4:42056179-42056198 None:intergenic 25.0%
! ATAATCATTGAATGACTAAG+TGG + chr1_4:42056487-42056506 Msa0163720:intron 25.0%
!!! AACCCCTTAATTTCTTTTTT+TGG + chr1_4:42056690-42056709 Msa0163720:intron 25.0%
!!! AATATCCATCTAAAAGCATT+AGG + chr1_4:42056749-42056768 Msa0163720:CDS 25.0%
!!! AAAAGCATTAGGTTTACTTA+CGG + chr1_4:42056760-42056779 Msa0163720:CDS 25.0%
!! TTTTCAGCATAATATGCAAA+AGG + chr1_4:42057009-42057028 Msa0163720:intron 25.0%
! AGTTAATATCAAACCATACT+TGG - chr1_4:42057068-42057087 None:intergenic 25.0%
!!! GATATTAACTTATTTTGTCG+TGG + chr1_4:42057078-42057097 Msa0163720:intron 25.0%
! TCACATTTAATTGAACAATC+AGG - chr1_4:42057312-42057331 None:intergenic 25.0%
! TGATTGTTCAATTAAATGTG+AGG + chr1_4:42057311-42057330 Msa0163720:CDS 25.0%
!!! ATATTGTTTTGTTGCTTCTT+TGG + chr1_4:42057389-42057408 Msa0163720:intron 25.0%
!!! TATTGTTTTGTTGCTTCTTT+GGG + chr1_4:42057390-42057409 Msa0163720:intron 25.0%
!!! TTATTTGAAGTTTGATGATG+AGG + chr1_4:42057501-42057520 Msa0163720:intron 25.0%
!! TCTAAATCCTTTTAACAGTT+TGG - chr1_4:42058011-42058030 None:intergenic 25.0%
! TTTGTACTAAATAGTATACC+GGG + chr1_4:42058154-42058173 Msa0163720:intron 25.0%
! AAAAAAAGTGAACGACAAAA+AGG - chr1_4:42058267-42058286 None:intergenic 25.0%
! TCTCCATCATAATTAACAAA+AGG - chr1_4:42058425-42058444 None:intergenic 25.0%
! TATCCAAATAGGTATATGTA+TGG - chr1_4:42058534-42058553 None:intergenic 25.0%
! ACAAATCGATAGAAATAAAG+AGG + chr1_4:42058889-42058908 Msa0163720:CDS 25.0%
!!! CTTTTTCTCTTGTTTGTAAT+AGG - chr1_4:42058966-42058985 None:intergenic 25.0%
! ATTACAAACAAGAGAAAAAG+AGG + chr1_4:42058966-42058985 Msa0163720:CDS 25.0%
!!! ATTACAGTTGGATTCTTTTT+TGG - chr1_4:42058996-42059015 None:intergenic 25.0%
!! CCATCTTTTGAATTCTTTTT+CGG - chr1_4:42059146-42059165 None:intergenic 25.0%
!! TAGGTTGGATATTAATCATA+GGG + chr1_4:42059436-42059455 Msa0163720:CDS 25.0%
!! GATTTGAGGTATTTGAAATT+TGG + chr1_4:42059851-42059870 Msa0163720:intron 25.0%
!!! TATGTCTTATTCAACTTTTC+AGG - chr1_4:42059946-42059965 None:intergenic 25.0%
! AACTACTTCAATAGACAATT+AGG + chr1_4:42059979-42059998 Msa0163720:intron 25.0%
! ACTACTTCAATAGACAATTA+GGG + chr1_4:42059980-42059999 Msa0163720:intron 25.0%
! AAAAACTTCTTATGTTCCAT+AGG - chr1_4:42060043-42060062 None:intergenic 25.0%
! ATTTATCATAACATTGACCT+GGG - chr1_4:42060095-42060114 None:intergenic 25.0%
! AATTTATCATAACATTGACC+TGG - chr1_4:42060096-42060115 None:intergenic 25.0%
! TTGATTAAGCTAGTTATCTT+TGG + chr1_4:42060173-42060192 Msa0163720:intron 25.0%
!! TGTAATTTTACTTACAGCAT+AGG - chr1_4:42060223-42060242 None:intergenic 25.0%
! TATTGCAACTATTTACTTAC+TGG - chr1_4:42060283-42060302 None:intergenic 25.0%
! TGAATCTACATGAAAAGAAT+CGG - chr1_4:42060313-42060332 None:intergenic 25.0%
!! GTTTTTATTCGTCAAATTCA+TGG + chr1_4:42060410-42060429 Msa0163720:intron 25.0%
!! AAAGGGGATGAATATTATTT+TGG - chr1_4:42060650-42060669 None:intergenic 25.0%
!! TATTACTATCTGTGATTTTG+AGG + chr1_4:42060913-42060932 Msa0163720:intron 25.0%
! ATTATACTTGTATCAATTGC+AGG + chr1_4:42060970-42060989 Msa0163720:intron 25.0%
!! AGATCCTCGTTTTATAAAAT+TGG + chr1_4:42061049-42061068 Msa0163720:CDS 25.0%
! TTCCTCTATTCTAACTATAA+CGG + chr1_4:42061124-42061143 Msa0163720:intron 25.0%
! ATTTGTTCAAAAACGTAGAT+GGG - chr1_4:42061158-42061177 None:intergenic 25.0%
!! AATTTGTTCAAAAACGTAGA+TGG - chr1_4:42061159-42061178 None:intergenic 25.0%
! CTTCTTAAAAATGCAAGATA+AGG - chr1_4:42061260-42061279 None:intergenic 25.0%
!!! TTTTTAAGAAGTCGATTAGA+TGG + chr1_4:42061269-42061288 Msa0163720:intron 25.0%
!!! TCAAAGATTTGTTGAAAAGA+AGG - chr1_4:42061353-42061372 None:intergenic 25.0%
! ACATTGGAACACAAATTAAT+AGG + chr1_4:42061440-42061459 Msa0163720:intron 25.0%
! ATTATGCTTGTAAAAAACAG+TGG + chr1_4:42061510-42061529 Msa0163720:intron 25.0%
!!! TGATGTTTTTAAGTTTTCCT+GGG - chr1_4:42061796-42061815 None:intergenic 25.0%
!!! TTGATGTTTTTAAGTTTTCC+TGG - chr1_4:42061797-42061816 None:intergenic 25.0%
! ACAGAAAATTCAATTCAGTA+AGG - chr1_4:42061858-42061877 None:intergenic 25.0%
! TTAGAATCACTTAAAAAAGG+TGG + chr1_4:42061911-42061930 Msa0163720:intron 25.0%
! TCATTTAAGAAAGGAAAAGA+AGG - chr1_4:42062185-42062204 None:intergenic 25.0%
! TTTACCTTGCTTTAGTAATA+TGG + chr1_4:42062207-42062226 Msa0163720:intron 25.0%
! TATTCCATATTACTAAAGCA+AGG - chr1_4:42062214-42062233 None:intergenic 25.0%
! AAGACCAAAATATCAAGAAA+CGG + chr1_4:42062538-42062557 Msa0163720:intron 25.0%
!! CTATTACTTCAGAAATTTTG+TGG - chr1_4:42062643-42062662 None:intergenic 25.0%
!!! CAAAATTTCTGAAGTAATAG+AGG + chr1_4:42062643-42062662 Msa0163720:intron 25.0%
!! GAATTATTACATAAAGGTGT+AGG - chr1_4:42063057-42063076 None:intergenic 25.0%
! AATTCTTCATCTAAATGTGA+TGG + chr1_4:42063216-42063235 Msa0163720:CDS 25.0%
! AGAAACTGATAGTCATAATT+AGG + chr1_4:42063510-42063529 Msa0163720:intron 25.0%
! TGAATAATTCTGTTTAACAG+TGG + chr1_4:42063559-42063578 Msa0163720:intron 25.0%
! CATATTTAAAAAGGGAAATC+TGG + chr1_4:42063594-42063613 Msa0163720:intron 25.0%
! AATTGCAAGAGATAGATTAA+AGG + chr1_4:42063624-42063643 Msa0163720:intron 25.0%
!! AGAATAAGCTCTCTAATTTT+TGG - chr1_4:42063716-42063735 None:intergenic 25.0%
! TTTACCAATGAATTTGATGA+GGG - chr1_4:42064023-42064042 None:intergenic 25.0%
! ATTTACCAATGAATTTGATG+AGG - chr1_4:42064024-42064043 None:intergenic 25.0%
! AAGTTAAATAAATCATCTGG+AGG - chr1_4:42064095-42064114 None:intergenic 25.0%
! GAAGATTACTTCAATAAACA+AGG + chr1_4:42064317-42064336 Msa0163720:intron 25.0%
! TTCAGATGTAAGATATTTGT+CGG - chr1_4:42064358-42064377 None:intergenic 25.0%
! TTAAACATTTCAAAGGTAAG+AGG - chr1_4:42064409-42064428 None:intergenic 25.0%
! CTATCGTTCAAAAAGAAATA+AGG - chr1_4:42064543-42064562 None:intergenic 25.0%
!!! CTTATTTCTTTTTGAACGAT+AGG + chr1_4:42064541-42064560 Msa0163720:intron 25.0%
!! AATAAAAAAAGCGTATAGAC+GGG - chr1_4:42064748-42064767 None:intergenic 25.0%
!! GACTAGTTAATAAATTTGGT+TGG - chr1_4:42064970-42064989 None:intergenic 25.0%
!! CCAAGACTAGTTAATAAATT+TGG - chr1_4:42064974-42064993 None:intergenic 25.0%
!! CCAAATTTATTAACTAGTCT+TGG + chr1_4:42064971-42064990 Msa0163720:intron 25.0%
! AAAAATATGGTTGTTAAGGA+TGG + chr1_4:42065074-42065093 Msa0163720:intron 25.0%
! AGTTCTCTTTGTATATAGAT+TGG + chr1_4:42065126-42065145 Msa0163720:intron 25.0%
! GATCTAGAAAATCAAAATGT+CGG + chr1_4:42065333-42065352 Msa0163720:intron 25.0%
!! ACAAAAAAGTGATTTGAAGT+AGG - chr1_4:42065562-42065581 None:intergenic 25.0%
!!! TGATCAGAATTGCTTTTATT+TGG + chr1_4:42065595-42065614 Msa0163720:intron 25.0%
!! TAGAATGTATTTTACTGCTA+AGG + chr1_4:42065621-42065640 Msa0163720:intron 25.0%
!! GTTTTTATCTTTTTGTGAAG+TGG + chr1_4:42065716-42065735 Msa0163720:intron 25.0%
! ATATGATCCAGTTAAAATCA+TGG - chr1_4:42066170-42066189 None:intergenic 25.0%
! TTGTTTCGTTTAGAAAAAAC+TGG + chr1_4:42066466-42066485 Msa0163720:intron 25.0%
! TGTTTCGTTTAGAAAAAACT+GGG + chr1_4:42066467-42066486 Msa0163720:intron 25.0%
! GTTGCATACTATGAAAAATA+CGG + chr1_4:42066507-42066526 Msa0163720:intron 25.0%
!! CATTGAGTCATTTCTTTTAA+GGG - chr1_4:42066908-42066927 None:intergenic 25.0%
!! TCATTGAGTCATTTCTTTTA+AGG - chr1_4:42066909-42066928 None:intergenic 25.0%
! TTAAAAGAAATGACTCAATG+AGG + chr1_4:42066908-42066927 Msa0163720:intron 25.0%
!!! CACAGTTTTAAAAGAAAATG+AGG - chr1_4:42066973-42066992 None:intergenic 25.0%
! AAAATTCATGTACCTAATCA+AGG - chr1_4:42067091-42067110 None:intergenic 25.0%
!! GTTTTATCCACGTAAATTTT+AGG + chr1_4:42067864-42067883 Msa0163720:three_prime_UTR 25.0%
! TGTAAAAACTTATTATCCTC+TGG + chr1_4:42067972-42067991 Msa0163720:three_prime_UTR 25.0%
! TTATTTGAAATTGTCCACCT+AGG + chr1_4:42055711-42055730 Msa0163720:five_prime_UTR 30.0%
AATTGCAAACAAGAGAGTAA+TGG + chr1_4:42055853-42055872 Msa0163720:exon 30.0%
TAAATAGTGTGGCAATAGTT+AGG - chr1_4:42055895-42055914 None:intergenic 30.0%
GAAAAAGAAGAAAAAGACGA+AGG + chr1_4:42055934-42055953 Msa0163720:CDS 30.0%
!!! TTTCTTCCGTCACTTTTTTA+AGG + chr1_4:42056170-42056189 Msa0163720:CDS 30.0%
GTTAATCTGTTGTGAAGAAA+TGG + chr1_4:42056242-42056261 Msa0163720:intron 30.0%
TTATAACCAACTCAAAGAGT+TGG - chr1_4:42056406-42056425 None:intergenic 30.0%
!! AACTCTTTGAGTTGGTTATA+AGG + chr1_4:42056405-42056424 Msa0163720:intron 30.0%
GATTGGATAGACATAATTGT+AGG - chr1_4:42056515-42056534 None:intergenic 30.0%
AATATTTACTTGAAGAGGGA+AGG + chr1_4:42056536-42056555 Msa0163720:intron 30.0%
ATATTTACTTGAAGAGGGAA+GGG + chr1_4:42056537-42056556 Msa0163720:intron 30.0%
AAAGAAATTAAGGGGTTGTT+TGG - chr1_4:42056687-42056706 None:intergenic 30.0%
! GTAAACCTAATGCTTTTAGA+TGG - chr1_4:42056757-42056776 None:intergenic 30.0%
ATTAGGTTTACTTACGGAAT+TGG + chr1_4:42056766-42056785 Msa0163720:CDS 30.0%
TTAGGTTTACTTACGGAATT+GGG + chr1_4:42056767-42056786 Msa0163720:CDS 30.0%
CTCTAATTTAATTGTTTGCC+AGG + chr1_4:42056890-42056909 Msa0163720:intron 30.0%
ATATACTATAACTTCATGCC+TGG - chr1_4:42056911-42056930 None:intergenic 30.0%
! TCGCTGATTATTGTTTAACT+TGG + chr1_4:42057198-42057217 Msa0163720:intron 30.0%
!! AGTCAATTCTGTCTTTTTCA+TGG + chr1_4:42057443-42057462 Msa0163720:intron 30.0%
TAGCAGTAAAACATAGTGTA+CGG + chr1_4:42057624-42057643 Msa0163720:intron 30.0%
TACGGCATATATTATAAGCA+AGG + chr1_4:42057642-42057661 Msa0163720:intron 30.0%
ACGGCATATATTATAAGCAA+GGG + chr1_4:42057643-42057662 Msa0163720:intron 30.0%
ACATAATTGTAGAATAGAGG+TGG + chr1_4:42057668-42057687 Msa0163720:intron 30.0%
ATTAACCTAAAGGATTCAAG+TGG + chr1_4:42057774-42057793 Msa0163720:intron 30.0%
TTAACCTAAAGGATTCAAGT+GGG + chr1_4:42057775-42057794 Msa0163720:intron 30.0%
! GTAATTTTCGATCATAAAGC+AGG - chr1_4:42057822-42057841 None:intergenic 30.0%
AATGCGTTAAAGAGAAAGTT+TGG + chr1_4:42057895-42057914 Msa0163720:intron 30.0%
ATGCGTTAAAGAGAAAGTTT+GGG + chr1_4:42057896-42057915 Msa0163720:intron 30.0%
TTGTACTAAATAGTATACCG+GGG + chr1_4:42058155-42058174 Msa0163720:intron 30.0%
AATAGGTATATGTATGGAGT+AGG - chr1_4:42058528-42058547 None:intergenic 30.0%
ACTCCATACATATACCTATT+TGG + chr1_4:42058528-42058547 Msa0163720:intron 30.0%
!! TACCTATTTGGATAGTTTTG+TGG + chr1_4:42058540-42058559 Msa0163720:intron 30.0%
TAAACCAAGTATCAGAAAGA+AGG - chr1_4:42058690-42058709 None:intergenic 30.0%
! ATTTTGTGATAAGATGAACC+AGG - chr1_4:42058738-42058757 None:intergenic 30.0%
TGGTTCATCTTATCACAAAA+TGG + chr1_4:42058737-42058756 Msa0163720:CDS 30.0%
GGTTCATCTTATCACAAAAT+GGG + chr1_4:42058738-42058757 Msa0163720:CDS 30.0%
TATGGTGTCTTCTAAATATC+AGG + chr1_4:42058793-42058812 Msa0163720:CDS 30.0%
ATGGTGTCTTCTAAATATCA+GGG + chr1_4:42058794-42058813 Msa0163720:CDS 30.0%
! TTTTCAGTAGGATTCTTTCT+AGG - chr1_4:42058927-42058946 None:intergenic 30.0%
AAGAGTAAAAAAAGGCCTAA+AGG + chr1_4:42059116-42059135 Msa0163720:CDS 30.0%
CCGAAAAAGAATTCAAAAGA+TGG + chr1_4:42059143-42059162 Msa0163720:CDS 30.0%
! ACAAATTGGTTCTCACAATT+TGG - chr1_4:42059182-42059201 None:intergenic 30.0%
GAAATAAATTCAGCTGAATC+TGG - chr1_4:42059224-42059243 None:intergenic 30.0%
! GTAGGTTGGATATTAATCAT+AGG + chr1_4:42059435-42059454 Msa0163720:CDS 30.0%
TTCTCACACTGAATCAATAA+TGG - chr1_4:42059491-42059510 None:intergenic 30.0%
! AATGCTACATTTTGTGGAAT+GGG - chr1_4:42059572-42059591 None:intergenic 30.0%
TGAACAGAAAATGGAGAATA+AGG - chr1_4:42059751-42059770 None:intergenic 30.0%
! CTTTTCATGTAGATTCAACT+AGG + chr1_4:42060316-42060335 Msa0163720:intron 30.0%
! TTTTATGTTTGCCGTTGAAA+TGG + chr1_4:42060339-42060358 Msa0163720:intron 30.0%
TTTAGAAGCTAGCTATTAGT+GGG + chr1_4:42060722-42060741 Msa0163720:intron 30.0%
GTATCTCATACTACTTGATT+TGG + chr1_4:42060775-42060794 Msa0163720:intron 30.0%
AACATTGAGCATTTGAATAC+AGG - chr1_4:42061077-42061096 None:intergenic 30.0%
ATTCTCTCTATTGATACACT+TGG - chr1_4:42061466-42061485 None:intergenic 30.0%
AGCAAGTAAATAATCATGAG+GGG - chr1_4:42062111-42062130 None:intergenic 30.0%
CAGCAAGTAAATAATCATGA+GGG - chr1_4:42062112-42062131 None:intergenic 30.0%
GGCATAAATTGGATAACATT+AGG - chr1_4:42062164-42062183 None:intergenic 30.0%
! AAGGAAAAGAAGGCATAAAT+TGG - chr1_4:42062175-42062194 None:intergenic 30.0%
GCTTTAGTAATATGGAATAG+AGG + chr1_4:42062215-42062234 Msa0163720:intron 30.0%
TCATAAATGGTTATCTGTGT+AGG + chr1_4:42062304-42062323 Msa0163720:intron 30.0%
CATAAATGGTTATCTGTGTA+GGG + chr1_4:42062305-42062324 Msa0163720:intron 30.0%
!! CTAACACTTATTTTCGAGAA+AGG + chr1_4:42062421-42062440 Msa0163720:intron 30.0%
TATATTGTATAAAAGCGGAG+TGG + chr1_4:42062456-42062475 Msa0163720:intron 30.0%
! TCCATTGAACTTTTTACTGA+AGG + chr1_4:42062573-42062592 Msa0163720:intron 30.0%
TCCTTCAGTAAAAAGTTCAA+TGG - chr1_4:42062577-42062596 None:intergenic 30.0%
! CCATATAATGGAGAACAATT+CGG - chr1_4:42062671-42062690 None:intergenic 30.0%
GTTCTCCATTATATGGAAAA+TGG + chr1_4:42062675-42062694 Msa0163720:intron 30.0%
! GACTACCATTTTCCATATAA+TGG - chr1_4:42062683-42062702 None:intergenic 30.0%
GGAAGTTCAAAACAAACTAT+AGG + chr1_4:42062797-42062816 Msa0163720:intron 30.0%
TGTTCTTACGTTTATCTAGT+TGG + chr1_4:42063260-42063279 Msa0163720:intron 30.0%
GTTCTTACGTTTATCTAGTT+GGG + chr1_4:42063261-42063280 Msa0163720:intron 30.0%
TTCTTACGTTTATCTAGTTG+GGG + chr1_4:42063262-42063281 Msa0163720:intron 30.0%
! ACAAAGCCTATACTTTGTTT+CGG + chr1_4:42063375-42063394 Msa0163720:CDS 30.0%
ATTATCACTAACCCTTCAAA+AGG - chr1_4:42063438-42063457 None:intergenic 30.0%
AAGGCTCTCAAATTTCTTTA+AGG - chr1_4:42063681-42063700 None:intergenic 30.0%
TTAAAGAAATTTGAGAGCCT+TGG + chr1_4:42063680-42063699 Msa0163720:intron 30.0%
!! AAGCTCTCTAATTTTTGGAA+TGG - chr1_4:42063711-42063730 None:intergenic 30.0%
ATTATTGGGTAACTATTCAG+GGG - chr1_4:42063752-42063771 None:intergenic 30.0%
GATTATTGGGTAACTATTCA+GGG - chr1_4:42063753-42063772 None:intergenic 30.0%
TGATTATTGGGTAACTATTC+AGG - chr1_4:42063754-42063773 None:intergenic 30.0%
AATAAATAGAGAGAGGAAAG+GGG - chr1_4:42063781-42063800 None:intergenic 30.0%
GAATAAATAGAGAGAGGAAA+GGG - chr1_4:42063782-42063801 None:intergenic 30.0%
! CTTTAGGAATAAATAGAGAG+AGG - chr1_4:42063788-42063807 None:intergenic 30.0%
CTCTCTCTATTTATTCCTAA+AGG + chr1_4:42063786-42063805 Msa0163720:intron 30.0%
CTGGAGGAATTAAATAGATT+AGG - chr1_4:42064079-42064098 None:intergenic 30.0%
TACTTCAATAAACAAGGCAT+TGG + chr1_4:42064323-42064342 Msa0163720:intron 30.0%
ACTATTAAGTTAGAAGTCTC+TGG - chr1_4:42064467-42064486 None:intergenic 30.0%
! TGACAAGAATTTCTAAAGAG+AGG - chr1_4:42064648-42064667 None:intergenic 30.0%
AGAATCATATCTATCCATTG+CGG + chr1_4:42064668-42064687 Msa0163720:intron 30.0%
! GGAAAGATTTGTGTTGTTAA+AGG + chr1_4:42064922-42064941 Msa0163720:intron 30.0%
CTTGGAGTTTCCTTTAATTA+TGG + chr1_4:42064989-42065008 Msa0163720:intron 30.0%
GAAAAAGAACATGGTTGTTA+AGG + chr1_4:42065039-42065058 Msa0163720:intron 30.0%
CATGTTAAGTTAGTTACCTT+TGG + chr1_4:42065103-42065122 Msa0163720:intron 30.0%
ATATACAAAGAGAACTCCAA+AGG - chr1_4:42065122-42065141 None:intergenic 30.0%
CTAGATCACTTAATGTTGTT+GGG - chr1_4:42065320-42065339 None:intergenic 30.0%
TCTAGATCACTTAATGTTGT+TGG - chr1_4:42065321-42065340 None:intergenic 30.0%
! TCGGTCATATGTCTTTAAAA+AGG + chr1_4:42065352-42065371 Msa0163720:intron 30.0%
! CGGTCATATGTCTTTAAAAA+GGG + chr1_4:42065353-42065372 Msa0163720:intron 30.0%
GGTAATAATAGACTAACAAC+AGG + chr1_4:42065374-42065393 Msa0163720:intron 30.0%
ATAAAAGCAATTCTGATCAC+AGG - chr1_4:42065594-42065613 None:intergenic 30.0%
! GTTAAAATCATGGATTACCT+TGG - chr1_4:42066160-42066179 None:intergenic 30.0%
!! AGGTAATCCATGATTTTAAC+TGG + chr1_4:42066160-42066179 Msa0163720:intron 30.0%
! CTGTATCATTATGTGTTTTG+AGG + chr1_4:42066245-42066264 Msa0163720:CDS 30.0%
!!! ATCATTATGTGTTTTGAGGA+TGG + chr1_4:42066249-42066268 Msa0163720:CDS 30.0%
AACAATGAAAACCATTAGCT+TGG + chr1_4:42066272-42066291 Msa0163720:CDS 30.0%
CTTCTGTGATGTTATCAAAA+TGG + chr1_4:42066440-42066459 Msa0163720:intron 30.0%
ATACTATGAAAAATACGGTG+TGG + chr1_4:42066512-42066531 Msa0163720:intron 30.0%
TATAGAACAGGTCATTTAGA+TGG - chr1_4:42066649-42066668 None:intergenic 30.0%
CTGACATGTTATTATAGAAC+AGG - chr1_4:42066661-42066680 None:intergenic 30.0%
CTGTTCTATAATAACATGTC+AGG + chr1_4:42066659-42066678 Msa0163720:intron 30.0%
TAGAGTTCAACTTAAAACAG+CGG - chr1_4:42066841-42066860 None:intergenic 30.0%
CTGTTACAACTACAAATTTG+AGG - chr1_4:42067065-42067084 None:intergenic 30.0%
TTGTAACAGAATCCTTGATT+AGG + chr1_4:42067076-42067095 Msa0163720:intron 30.0%
!!! ATTTTTATTCTGGGATGGAT+TGG - chr1_4:42067119-42067138 None:intergenic 30.0%
! TGCTTTTGGATAATAAGTCT+CGG - chr1_4:42067339-42067358 None:intergenic 30.0%
! ATTAAACGCAATTCTGCTTT+TGG - chr1_4:42067353-42067372 None:intergenic 30.0%
! ACTGATGATTGTCAGATTTT+AGG + chr1_4:42067391-42067410 Msa0163720:CDS 30.0%
GAATCACATCATAATTAGCA+AGG - chr1_4:42067421-42067440 None:intergenic 30.0%
! TCTTTGTGATGGTGATAATA+TGG + chr1_4:42067502-42067521 Msa0163720:CDS 30.0%
! CTTTGTGATGGTGATAATAT+GGG + chr1_4:42067503-42067522 Msa0163720:CDS 30.0%
!!! TTTTTTTTGGTCAATACCAG+AGG - chr1_4:42067991-42068010 None:intergenic 30.0%
AAATGCCCTTTACTTTACCT+AGG - chr1_4:42055731-42055750 None:intergenic 35.0%
GGCATTTACCTTTCACAAAA+GGG + chr1_4:42055744-42055763 Msa0163720:five_prime_UTR 35.0%
ACCTTTCACAAAAGGGATTA+AGG + chr1_4:42055751-42055770 Msa0163720:five_prime_UTR 35.0%
CGTTGTTTATCAACAGAACA+GGG + chr1_4:42055774-42055793 Msa0163720:five_prime_UTR 35.0%
AGGGTTTGAATATCAGTTCT+GGG + chr1_4:42055810-42055829 Msa0163720:five_prime_UTR 35.0%
! AAACAAGAGAGTAATGGAAG+AGG + chr1_4:42055859-42055878 Msa0163720:exon 35.0%
! CGAGAATTTCTTTGAAGACA+TGG + chr1_4:42056075-42056094 Msa0163720:CDS 35.0%
TGTTCTTGAGCAATACGATT+TGG + chr1_4:42056276-42056295 Msa0163720:intron 35.0%
! AGAGTTGGTTAGGATTGATT+AGG - chr1_4:42056391-42056410 None:intergenic 35.0%
ACCATTAAATGTGCAGAGAA+TGG + chr1_4:42056716-42056735 Msa0163720:intron 35.0%
TCCATTCTCTGCACATTTAA+TGG - chr1_4:42056720-42056739 None:intergenic 35.0%
TTAAATGTGCAGAGAATGGA+AGG + chr1_4:42056720-42056739 Msa0163720:intron 35.0%
TCAGCATAATATGCAAAAGG+AGG + chr1_4:42057012-42057031 Msa0163720:intron 35.0%
ATACTTGGATTCTTGAGGTT+TGG - chr1_4:42057053-42057072 None:intergenic 35.0%
AAACCTCAAGAATCCAAGTA+TGG + chr1_4:42057052-42057071 Msa0163720:intron 35.0%
AAACCATACTTGGATTCTTG+AGG - chr1_4:42057058-42057077 None:intergenic 35.0%
AACTTGGCTAAACACTTTGT+TGG + chr1_4:42057214-42057233 Msa0163720:intron 35.0%
AGAGACTTTGTGATGAATGT+TGG + chr1_4:42057240-42057259 Msa0163720:intron 35.0%
TGTGATGTTTCATACGTTGA+GGG + chr1_4:42057473-42057492 Msa0163720:intron 35.0%
!! TGAAGTTTGATGATGAGGTA+AGG + chr1_4:42057506-42057525 Msa0163720:intron 35.0%
!! GAAGTTTGATGATGAGGTAA+GGG + chr1_4:42057507-42057526 Msa0163720:intron 35.0%
!! AAGTTTGATGATGAGGTAAG+GGG + chr1_4:42057508-42057527 Msa0163720:intron 35.0%
CTCTTAAAAGAACAATACGC+TGG - chr1_4:42057552-42057571 None:intergenic 35.0%
CGGCATATATTATAAGCAAG+GGG + chr1_4:42057644-42057663 Msa0163720:intron 35.0%
GGCACATAATTGTAGAATAG+AGG + chr1_4:42057665-42057684 Msa0163720:intron 35.0%
GTGTTGAATTTGGTATGCTA+TGG - chr1_4:42057704-42057723 None:intergenic 35.0%
ACAGAGCGAAATTAACCTAA+AGG + chr1_4:42057764-42057783 Msa0163720:intron 35.0%
AAATGGAAAAACACTGCCTT+AGG + chr1_4:42057937-42057956 Msa0163720:intron 35.0%
CTATCAAATAGCGACTATAG+TGG - chr1_4:42058131-42058150 None:intergenic 35.0%
GACATTTGGCATACAGAAAA+TGG - chr1_4:42058335-42058354 None:intergenic 35.0%
! GTTAATTATGATGGAGACAC+TGG + chr1_4:42058428-42058447 Msa0163720:intron 35.0%
GACCACAAAACTATCCAAAT+AGG - chr1_4:42058545-42058564 None:intergenic 35.0%
TTATTTCCTACTTCCAAGTC+TGG - chr1_4:42058634-42058653 None:intergenic 35.0%
ATGACCTTCTTTCTGATACT+TGG + chr1_4:42058683-42058702 Msa0163720:intron 35.0%
!!! AGGTTTTTTTTCCTTCTTCC+CGG - chr1_4:42058847-42058866 None:intergenic 35.0%
!!! TTTGTGCACGTGTCTTTTTT+AGG - chr1_4:42058867-42058886 None:intergenic 35.0%
ATAGAAATAAAGAGGCCTAG+AGG + chr1_4:42058897-42058916 Msa0163720:CDS 35.0%
!! ATTGCTTCGTTGTTTTCAGT+AGG - chr1_4:42058939-42058958 None:intergenic 35.0%
CAGTGGATAGTACAAATTGT+GGG + chr1_4:42059018-42059037 Msa0163720:CDS 35.0%
GAACAGTAAGAGGAACAAAT+TGG - chr1_4:42059196-42059215 None:intergenic 35.0%
GCATTCTTTCCCTTTGTATT+CGG - chr1_4:42059296-42059315 None:intergenic 35.0%
AAACTCTTGTTGCAAGAAGT+AGG + chr1_4:42059417-42059436 Msa0163720:CDS 35.0%
ATAATGGCCTACTTGTATCT+GGG - chr1_4:42059475-42059494 None:intergenic 35.0%
AATAATGGCCTACTTGTATC+TGG - chr1_4:42059476-42059495 None:intergenic 35.0%
! ATTGATTCAGTGTGAGAATG+AGG + chr1_4:42059493-42059512 Msa0163720:CDS 35.0%
! CAATGCTACATTTTGTGGAA+TGG - chr1_4:42059573-42059592 None:intergenic 35.0%
!! TCTGGAAGTGTAAGATGTTT+TGG + chr1_4:42059724-42059743 Msa0163720:intron 35.0%
!! CTGGAAGTGTAAGATGTTTT+GGG + chr1_4:42059725-42059744 Msa0163720:intron 35.0%
CCAAGAACATGAACAGAAAA+TGG - chr1_4:42059760-42059779 None:intergenic 35.0%
! CCATTTTCTGTTCATGTTCT+TGG + chr1_4:42059757-42059776 Msa0163720:intron 35.0%
!! CTTATTCAACTTTTCAGGAG+AGG - chr1_4:42059941-42059960 None:intergenic 35.0%
ATAAAATGTGACACAGCCTA+TGG + chr1_4:42060024-42060043 Msa0163720:intron 35.0%
GCTTATCATAAAGTAAACCC+AGG + chr1_4:42060075-42060094 Msa0163720:intron 35.0%
! TCGGATCTTTGTAACTTGTA+GGG - chr1_4:42060594-42060613 None:intergenic 35.0%
!! TATTTTGGATCTGTGAGAGA+GGG - chr1_4:42060635-42060654 None:intergenic 35.0%
!!! TTATTTTGGATCTGTGAGAG+AGG - chr1_4:42060636-42060655 None:intergenic 35.0%
! AATAGCTAGCTTCTAAAGGA+GGG - chr1_4:42060719-42060738 None:intergenic 35.0%
! TAATAGCTAGCTTCTAAAGG+AGG - chr1_4:42060720-42060739 None:intergenic 35.0%
! CACTAATAGCTAGCTTCTAA+AGG - chr1_4:42060723-42060742 None:intergenic 35.0%
! CTTTAGAAGCTAGCTATTAG+TGG + chr1_4:42060721-42060740 Msa0163720:intron 35.0%
TTAGAAGCTAGCTATTAGTG+GGG + chr1_4:42060723-42060742 Msa0163720:intron 35.0%
CAAGTAGTATGAGATACTAG+TGG - chr1_4:42060772-42060791 None:intergenic 35.0%
!! TACTACTTGATTTGGTACCT+AGG + chr1_4:42060783-42060802 Msa0163720:intron 35.0%
ATACTTGTATCAATTGCAGG+TGG + chr1_4:42060973-42060992 Msa0163720:intron 35.0%
TACTTGTATCAATTGCAGGT+GGG + chr1_4:42060974-42060993 Msa0163720:intron 35.0%
! GGCTCCAATTTTATAAAACG+AGG - chr1_4:42061056-42061075 None:intergenic 35.0%
AAATGCTCAATGTTGAAACG+TGG + chr1_4:42061083-42061102 Msa0163720:CDS 35.0%
GTCCGTTATAGTTAGAATAG+AGG - chr1_4:42061129-42061148 None:intergenic 35.0%
GTTATTGACAACTTGTCTTC+TGG + chr1_4:42061946-42061965 Msa0163720:intron 35.0%
GCAAGTAAATAATCATGAGG+GGG - chr1_4:42062110-42062129 None:intergenic 35.0%
CCAGCAAGTAAATAATCATG+AGG - chr1_4:42062113-42062132 None:intergenic 35.0%
CCTCATGATTATTTACTTGC+TGG + chr1_4:42062110-42062129 Msa0163720:CDS 35.0%
CAAATTATACCGTTCCATCA+TGG - chr1_4:42062139-42062158 None:intergenic 35.0%
ACCAAAATATCAAGAAACGG+TGG + chr1_4:42062541-42062560 Msa0163720:intron 35.0%
! TCCACCGTTTCTTGATATTT+TGG - chr1_4:42062545-42062564 None:intergenic 35.0%
CCGAATTGTTCTCCATTATA+TGG + chr1_4:42062668-42062687 Msa0163720:intron 35.0%
!! TCTACTAGTCTTAGATGGTT+TGG + chr1_4:42062701-42062720 Msa0163720:intron 35.0%
!! CTACTAGTCTTAGATGGTTT+GGG + chr1_4:42062702-42062721 Msa0163720:intron 35.0%
CTCTTACTAATGCTTCTAGT+GGG - chr1_4:42062742-42062761 None:intergenic 35.0%
TCTCTTACTAATGCTTCTAG+TGG - chr1_4:42062743-42062762 None:intergenic 35.0%
!! ACTAGAAGCATTAGTAAGAG+AGG + chr1_4:42062742-42062761 Msa0163720:intron 35.0%
ATAGGCCAATCATTTAAGAG+AGG + chr1_4:42062815-42062834 Msa0163720:intron 35.0%
CCAAACCTCTCTTAAATGAT+TGG - chr1_4:42062823-42062842 None:intergenic 35.0%
CCAATCATTTAAGAGAGGTT+TGG + chr1_4:42062820-42062839 Msa0163720:intron 35.0%
CAATACCTGACAGCATATTA+TGG + chr1_4:42062867-42062886 Msa0163720:intron 35.0%
TTTATATGTAGGTTGCTCTG+TGG + chr1_4:42063181-42063200 Msa0163720:intron 35.0%
GATAAACGTAAGAACACGTT+GGG - chr1_4:42063256-42063275 None:intergenic 35.0%
AGATAAACGTAAGAACACGT+TGG - chr1_4:42063257-42063276 None:intergenic 35.0%
CAGATAAACAACTGAGTCAA+TGG - chr1_4:42063350-42063369 None:intergenic 35.0%
TTCCTATTAGAACAGTTGCA+TGG + chr1_4:42063409-42063428 Msa0163720:CDS 35.0%
TCCTATTAGAACAGTTGCAT+GGG + chr1_4:42063410-42063429 Msa0163720:CDS 35.0%
! GATCATTCACATCAGTCTTT+TGG - chr1_4:42063474-42063493 None:intergenic 35.0%
GAAAGGGGAAAGTGATTATT+GGG - chr1_4:42063766-42063785 None:intergenic 35.0%
GGAATAAATAGAGAGAGGAA+AGG - chr1_4:42063783-42063802 None:intergenic 35.0%
!!! CAGCTATGTTTTTTGCCTTT+AGG - chr1_4:42063804-42063823 None:intergenic 35.0%
TGGAGATTGACTATTATGCT+AGG + chr1_4:42064156-42064175 Msa0163720:intron 35.0%
TCTAACTTAATAGTAACCGC+AGG + chr1_4:42064473-42064492 Msa0163720:CDS 35.0%
AGGAAAAAAAAACTCACCGT+AGG - chr1_4:42064523-42064542 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_4:42064604-42064623 Msa0163720:intron 35.0%
GAATCATATCTATCCATTGC+GGG + chr1_4:42064669-42064688 Msa0163720:intron 35.0%
AAGAACATGGTTGTTAAGGA+TGG + chr1_4:42065043-42065062 Msa0163720:intron 35.0%
GATGGCCCTTCAAAAAAATA+TGG + chr1_4:42065061-42065080 Msa0163720:intron 35.0%
!! AACAAGTTGGTTGTTAGCAA+GGG - chr1_4:42065185-42065204 None:intergenic 35.0%
! TTGCTAACAACCAACTTGTT+GGG + chr1_4:42065185-42065204 Msa0163720:intron 35.0%
TCACTTAATGTTGTTGGGTT+GGG - chr1_4:42065315-42065334 None:intergenic 35.0%
ATCACTTAATGTTGTTGGGT+TGG - chr1_4:42065316-42065335 None:intergenic 35.0%
ACAACAGGACTAATAATAGC+AGG + chr1_4:42065389-42065408 Msa0163720:intron 35.0%
!!! TTATTTTTTGTCTGTGCTGC+TGG + chr1_4:42065522-42065541 Msa0163720:intron 35.0%
TGCTAAGGAAAAGTAGTAGT+AGG + chr1_4:42065636-42065655 Msa0163720:intron 35.0%
GAACTGAGAGTAAATTCAAG+AGG - chr1_4:42065850-42065869 None:intergenic 35.0%
AACAAGTTTAACAGCCTCTA+AGG - chr1_4:42066027-42066046 None:intergenic 35.0%
! GCTGTTAAACTTGTTTCCAA+TGG + chr1_4:42066032-42066051 Msa0163720:intron 35.0%
CAGACTGTAAATGATTCTCT+GGG - chr1_4:42066122-42066141 None:intergenic 35.0%
GAATCATTTACAGTCTGGAT+TGG + chr1_4:42066125-42066144 Msa0163720:CDS 35.0%
CGTATTCATCTTATGCCATT+TGG + chr1_4:42066370-42066389 Msa0163720:CDS 35.0%
CTATAATAACATGTCAGGCA+TGG + chr1_4:42066664-42066683 Msa0163720:intron 35.0%
ATGCTACTCTTACCTGAAAA+CGG - chr1_4:42066721-42066740 None:intergenic 35.0%
! AGGTAAGAGTAGCATTTTGT+TGG + chr1_4:42066726-42066745 Msa0163720:intron 35.0%
AACTTAAAACAGCGGTATCA+TGG - chr1_4:42066833-42066852 None:intergenic 35.0%
!!! TCTTTTAAAACTGTGAGACG+TGG + chr1_4:42066978-42066997 Msa0163720:intron 35.0%
TGAAGCAACTAAACGAAAAC+TGG - chr1_4:42067036-42067055 None:intergenic 35.0%
TCAGCTAACAACTAAATCAG+TGG + chr1_4:42067168-42067187 Msa0163720:intron 35.0%
ACTGATCCACATAGAAAGAA+TGG - chr1_4:42067220-42067239 None:intergenic 35.0%
AGCTGCAACAAATTGAAGAT+TGG - chr1_4:42067483-42067502 None:intergenic 35.0%
! TGATGGTGATAATATGGGTT+TGG + chr1_4:42067508-42067527 Msa0163720:CDS 35.0%
ATAATGAAAAGCCGGATTCT+GGG + chr1_4:42067669-42067688 Msa0163720:CDS 35.0%
AGTGAGATGGAACATTAACA+AGG + chr1_4:42067736-42067755 Msa0163720:CDS 35.0%
GTGAGATGGAACATTAACAA+GGG + chr1_4:42067737-42067756 Msa0163720:CDS 35.0%
AAAACGCTATCATCTCTTCA+AGG - chr1_4:42067849-42067868 None:intergenic 35.0%
CTCAAGACCTAAAATTTACG+TGG - chr1_4:42067874-42067893 None:intergenic 35.0%
TGTCCACCTAGGTAAAGTAA+AGG + chr1_4:42055722-42055741 Msa0163720:five_prime_UTR 40.0%
GTCCACCTAGGTAAAGTAAA+GGG + chr1_4:42055723-42055742 Msa0163720:five_prime_UTR 40.0%
GGGCATTTACCTTTCACAAA+AGG + chr1_4:42055743-42055762 Msa0163720:five_prime_UTR 40.0%
! GCCTTAATCCCTTTTGTGAA+AGG - chr1_4:42055755-42055774 None:intergenic 40.0%
GCGTTGTTTATCAACAGAAC+AGG + chr1_4:42055773-42055792 Msa0163720:five_prime_UTR 40.0%
CAGAACTGATATTCAAACCC+TGG - chr1_4:42055811-42055830 None:intergenic 40.0%
CAGGGTTTGAATATCAGTTC+TGG + chr1_4:42055809-42055828 Msa0163720:five_prime_UTR 40.0%
! ACTCTCTTGTTTGCAATTGC+AGG - chr1_4:42055851-42055870 None:intergenic 40.0%
ATGTATCAGCTATGATGCTC+TGG + chr1_4:42056316-42056335 Msa0163720:intron 40.0%
TCCTAACCAACTCTTTGAGT+TGG + chr1_4:42056397-42056416 Msa0163720:intron 40.0%
! ACCAACTCAAAGAGTTGGTT+AGG - chr1_4:42056401-42056420 None:intergenic 40.0%
TATGAGCCGAATCTCTAAGT+TGG + chr1_4:42056604-42056623 Msa0163720:intron 40.0%
ATGAGCCGAATCTCTAAGTT+GGG + chr1_4:42056605-42056624 Msa0163720:intron 40.0%
CGAAACCCAACTTAGAGATT+CGG - chr1_4:42056613-42056632 None:intergenic 40.0%
TATAGGAGGACTTGTACCTT+AGG - chr1_4:42056865-42056884 None:intergenic 40.0%
GACTTTGTGATGAATGTTGG+AGG + chr1_4:42057243-42057262 Msa0163720:CDS 40.0%
TGAATGTTGGAGGTTCTGTA+TGG + chr1_4:42057253-42057272 Msa0163720:CDS 40.0%
GAATGTTGGAGGTTCTGTAT+GGG + chr1_4:42057254-42057273 Msa0163720:CDS 40.0%
GTTCTGTATGGGCATTAGAT+TGG + chr1_4:42057265-42057284 Msa0163720:CDS 40.0%
GTGTGATGTTTCATACGTTG+AGG + chr1_4:42057472-42057491 Msa0163720:intron 40.0%
GCTACTTCTACTCACACATT+CGG - chr1_4:42057608-42057627 None:intergenic 40.0%
ATACATGTCCAAACCACCTA+AGG - chr1_4:42057956-42057975 None:intergenic 40.0%
! TGGTTTGGACATGTATTGAG+AGG + chr1_4:42057960-42057979 Msa0163720:intron 40.0%
! CACTATAACGTGGTGGAATT+TGG - chr1_4:42058197-42058216 None:intergenic 40.0%
CAAATTCCACCACGTTATAG+TGG + chr1_4:42058195-42058214 Msa0163720:intron 40.0%
GATGCTATACCACTATAACG+TGG - chr1_4:42058207-42058226 None:intergenic 40.0%
AAGGAATTACCCACATCACA+GGG - chr1_4:42058248-42058267 None:intergenic 40.0%
AAAGGAATTACCCACATCAC+AGG - chr1_4:42058249-42058268 None:intergenic 40.0%
TTGGCATACAGAAAATGGTG+AGG - chr1_4:42058330-42058349 None:intergenic 40.0%
! CATGGTGTCAACTAGCTATT+AGG - chr1_4:42058375-42058394 None:intergenic 40.0%
CACCATGTTAAATTACCACC+TGG + chr1_4:42058388-42058407 Msa0163720:intron 40.0%
AGCCAGGTGGTAATTTAACA+TGG - chr1_4:42058393-42058412 None:intergenic 40.0%
CAAAAGGATTTAGGTAAGCC+AGG - chr1_4:42058409-42058428 None:intergenic 40.0%
ACTTACCTTTGTTCCAGACT+TGG + chr1_4:42058618-42058637 Msa0163720:intron 40.0%
! TACTTCCAAGTCTGGAACAA+AGG - chr1_4:42058626-42058645 None:intergenic 40.0%
TTTGTTCCAGACTTGGAAGT+AGG + chr1_4:42058625-42058644 Msa0163720:intron 40.0%
TTGTGATAAGATGAACCAGG+CGG - chr1_4:42058735-42058754 None:intergenic 40.0%
!! GAAGAAGTATCATATCTCCC+CGG + chr1_4:42058825-42058844 Msa0163720:CDS 40.0%
!! AAGAAGTATCATATCTCCCC+GGG + chr1_4:42058826-42058845 Msa0163720:CDS 40.0%
!!! GTTTTTTTTCCTTCTTCCCG+GGG - chr1_4:42058845-42058864 None:intergenic 40.0%
!!! GGTTTTTTTTCCTTCTTCCC+GGG - chr1_4:42058846-42058865 None:intergenic 40.0%
AAATAAAGAGGCCTAGAGGA+AGG + chr1_4:42058901-42058920 Msa0163720:CDS 40.0%
GAATCCAACTGTAATAGCAG+TGG + chr1_4:42059001-42059020 Msa0163720:CDS 40.0%
CTATCCACTGCTATTACAGT+TGG - chr1_4:42059008-42059027 None:intergenic 40.0%
GCAGTGGATAGTACAAATTG+TGG + chr1_4:42059017-42059036 Msa0163720:CDS 40.0%
ACTACCAGATGCTATGTACT+TGG - chr1_4:42059045-42059064 None:intergenic 40.0%
! CATCTGGTAGTGTCTCAAAT+GGG + chr1_4:42059054-42059073 Msa0163720:CDS 40.0%
!!! TTCTTTTTCGGTCGTCCTTT+AGG - chr1_4:42059134-42059153 None:intergenic 40.0%
TCTGGAAGTTGAACAGTAAG+AGG - chr1_4:42059206-42059225 None:intergenic 40.0%
ATTTCTCCAGATGTAGTTCC+TGG + chr1_4:42059239-42059258 Msa0163720:CDS 40.0%
AAAGCTGCTGCGAATACAAA+GGG + chr1_4:42059320-42059339 Msa0163720:CDS 40.0%
AAAGCTGCTCCGAATACAAA+GGG + chr1_4:42059356-42059375 Msa0163720:CDS 40.0%
TCTTGTTGCAAGAAGTAGGT+TGG + chr1_4:42059421-42059440 Msa0163720:CDS 40.0%
ATGCTTGAGGTTCCAATACA+GGG - chr1_4:42059541-42059560 None:intergenic 40.0%
! CTAGGCAATGCTACATTTTG+TGG - chr1_4:42059578-42059597 None:intergenic 40.0%
! ATGCCTAGCTCATAATGGAA+AGG + chr1_4:42059607-42059626 Msa0163720:CDS 40.0%
! TCATAATGGAAAGGTGGCAT+GGG + chr1_4:42059616-42059635 Msa0163720:CDS 40.0%
GAGGAATCAAGATTGCTAAG+AGG - chr1_4:42059656-42059675 None:intergenic 40.0%
AGACAATTAGGGTTGACAGT+TGG + chr1_4:42059991-42060010 Msa0163720:intron 40.0%
GTGTATTCCAATTGTTGTCC+AGG + chr1_4:42060195-42060214 Msa0163720:intron 40.0%
ATAGGTACCTGGACAACAAT+TGG - chr1_4:42060205-42060224 None:intergenic 40.0%
TTACTTACAGCATAGGTACC+TGG - chr1_4:42060216-42060235 None:intergenic 40.0%
GACCATTGCAACCATTTCAA+CGG - chr1_4:42060353-42060372 None:intergenic 40.0%
! CAAACAGAATTTTGTGCAGC+AGG - chr1_4:42060496-42060515 None:intergenic 40.0%
ATGTTTCCAGTAACCCACAA+TGG + chr1_4:42060524-42060543 Msa0163720:intron 40.0%
! TCATTGCAATCTGTCGTTTG+AGG - chr1_4:42060552-42060571 None:intergenic 40.0%
! GTCGGATCTTTGTAACTTGT+AGG - chr1_4:42060595-42060614 None:intergenic 40.0%
GGTATCTTTCACTGACAAGT+CGG - chr1_4:42060613-42060632 None:intergenic 40.0%
! ATTTTGGATCTGTGAGAGAG+GGG - chr1_4:42060634-42060653 None:intergenic 40.0%
TAGAAGCTAGCTATTAGTGG+GGG + chr1_4:42060724-42060743 Msa0163720:intron 40.0%
ATCAATGGCAGTGCTATGAT+GGG - chr1_4:42060829-42060848 None:intergenic 40.0%
TATCAATGGCAGTGCTATGA+TGG - chr1_4:42060830-42060849 None:intergenic 40.0%
!! ATTTTGAGGAGCTTATGACG+TGG + chr1_4:42060927-42060946 Msa0163720:intron 40.0%
! ATCCATTACGGGTCTTTTGT+AGG + chr1_4:42061231-42061250 Msa0163720:intron 40.0%
TACCTACAAAAGACCCGTAA+TGG - chr1_4:42061236-42061255 None:intergenic 40.0%
! CAATGCATTGGTGGAATATG+CGG - chr1_4:42061323-42061342 None:intergenic 40.0%
TATTCCACCAATGCATTGAG+AGG + chr1_4:42061325-42061344 Msa0163720:intron 40.0%
AAACAGTGGACCTGCATAAT+AGG + chr1_4:42061524-42061543 Msa0163720:intron 40.0%
AACAGTGGACCTGCATAATA+GGG + chr1_4:42061525-42061544 Msa0163720:intron 40.0%
CATAACAAGCCCTATTATGC+AGG - chr1_4:42061537-42061556 None:intergenic 40.0%
!! CTGCATAATAGGGCTTGTTA+TGG + chr1_4:42061535-42061554 Msa0163720:intron 40.0%
!! TAATAGGGCTTGTTATGGCT+TGG + chr1_4:42061540-42061559 Msa0163720:intron 40.0%
TCAATTCAGTAAGGCAGAGA+CGG - chr1_4:42061849-42061868 None:intergenic 40.0%
!! TTAACATTAATGGTGGGCAG+AGG - chr1_4:42061888-42061907 None:intergenic 40.0%
ATTGACAACATGATACCCAC+TGG - chr1_4:42062334-42062353 None:intergenic 40.0%
AGTGGGTATCATGTTGTCAA+TGG + chr1_4:42062333-42062352 Msa0163720:intron 40.0%
GTGGGTATCATGTTGTCAAT+GGG + chr1_4:42062334-42062353 Msa0163720:intron 40.0%
! ATGTTGTCAATGGGTTCTGT+AGG + chr1_4:42062343-42062362 Msa0163720:intron 40.0%
! TGTTGTCAATGGGTTCTGTA+GGG + chr1_4:42062344-42062363 Msa0163720:intron 40.0%
TATAAAAGCGGAGTGGTCTA+AGG + chr1_4:42062463-42062482 Msa0163720:intron 40.0%
ATAAAAGCGGAGTGGTCTAA+GGG + chr1_4:42062464-42062483 Msa0163720:intron 40.0%
! ATAGGGTGAGGTGCTTTAAA+AGG + chr1_4:42062491-42062510 Msa0163720:intron 40.0%
!! AGGTGCTTTAAAAGGTGATG+AGG + chr1_4:42062499-42062518 Msa0163720:intron 40.0%
!! GGTGCTTTAAAAGGTGATGA+GGG + chr1_4:42062500-42062519 Msa0163720:intron 40.0%
!! GGTAGTCTACTAGTCTTAGA+TGG + chr1_4:42062696-42062715 Msa0163720:intron 40.0%
AGTAAGAGAGGTTGACTAGA+TGG + chr1_4:42062754-42062773 Msa0163720:intron 40.0%
GTAAGAGAGGTTGACTAGAT+GGG + chr1_4:42062755-42062774 Msa0163720:intron 40.0%
TGACCTCATGTAGTTGGAAA+AGG + chr1_4:42062910-42062929 Msa0163720:intron 40.0%
! AAGCCTTTTCCAACTACATG+AGG - chr1_4:42062916-42062935 None:intergenic 40.0%
GTTGGAAAAGGCTTAGTTGT+TGG + chr1_4:42062922-42062941 Msa0163720:intron 40.0%
GAAAAGGCTTAGTTGTTGGT+TGG + chr1_4:42062926-42062945 Msa0163720:intron 40.0%
TTATCTAGTTGGGGTTGCTA+AGG + chr1_4:42063271-42063290 Msa0163720:intron 40.0%
! AAGCCTATACTTTGTTTCGG+TGG + chr1_4:42063378-42063397 Msa0163720:CDS 40.0%
! AGCCTATACTTTGTTTCGGT+GGG + chr1_4:42063379-42063398 Msa0163720:CDS 40.0%
!!! TTTTTGGAATGGAGAGACCA+AGG - chr1_4:42063700-42063719 None:intergenic 40.0%
TAACTATTCAGGGGTTATGG+GGG - chr1_4:42063743-42063762 None:intergenic 40.0%
GTAACTATTCAGGGGTTATG+GGG - chr1_4:42063744-42063763 None:intergenic 40.0%
GGTAACTATTCAGGGGTTAT+GGG - chr1_4:42063745-42063764 None:intergenic 40.0%
GGAAAGGGGAAAGTGATTAT+TGG - chr1_4:42063767-42063786 None:intergenic 40.0%
CGTTCCCTCATCAAATTCAT+TGG + chr1_4:42064016-42064035 Msa0163720:intron 40.0%
GCATCATTTGTGTTCAGACA+TGG + chr1_4:42064240-42064259 Msa0163720:intron 40.0%
AAAGGTAAGAGGATCGTCAA+AGG - chr1_4:42064398-42064417 None:intergenic 40.0%
! ACATGAAGGCCTCAAGTTTT+GGG + chr1_4:42064496-42064515 Msa0163720:CDS 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_4:42064606-42064625 None:intergenic 40.0%
! TGGTTGTTAGCAAGGGTTTT+CGG - chr1_4:42065178-42065197 None:intergenic 40.0%
!! CAACAAGTTGGTTGTTAGCA+AGG - chr1_4:42065186-42065205 None:intergenic 40.0%
CTTGCTAACAACCAACTTGT+TGG + chr1_4:42065184-42065203 Msa0163720:intron 40.0%
CTGAATGTAGATCCAGAATG+TGG + chr1_4:42065243-42065262 Msa0163720:intron 40.0%
TTGCCATCTCTTCATTCACT+TGG + chr1_4:42065276-42065295 Msa0163720:intron 40.0%
GTTCCAAGTGAATGAAGAGA+TGG - chr1_4:42065282-42065301 None:intergenic 40.0%
! TGTCAGAACTCAGAGTATTC+AGG - chr1_4:42065419-42065438 None:intergenic 40.0%
! CTCTGAGTTCTGACAACATT+TGG + chr1_4:42065424-42065443 Msa0163720:intron 40.0%
AAGTCAAGTTTACCAGCTCA+AGG - chr1_4:42065782-42065801 None:intergenic 40.0%
ATTTGTACCTTCAGCCTTAG+AGG + chr1_4:42066010-42066029 Msa0163720:intron 40.0%
! TCCAATGGTTTGCATCATGA+TGG + chr1_4:42066047-42066066 Msa0163720:intron 40.0%
TCCATCATGATGCAAACCAT+TGG - chr1_4:42066051-42066070 None:intergenic 40.0%
! AAATGATTCTCTGGGAAGGT+TGG - chr1_4:42066114-42066133 None:intergenic 40.0%
! CTGTAAATGATTCTCTGGGA+AGG - chr1_4:42066118-42066137 None:intergenic 40.0%
CCAGACTGTAAATGATTCTC+TGG - chr1_4:42066123-42066142 None:intergenic 40.0%
CCAGAGAATCATTTACAGTC+TGG + chr1_4:42066120-42066139 Msa0163720:CDS 40.0%
CTTTCCAGTGTATATCGTTC+CGG - chr1_4:42066325-42066344 None:intergenic 40.0%
ACACTGGAAAGAAACAACCT+TGG + chr1_4:42066334-42066353 Msa0163720:CDS 40.0%
AAGAAACAACCTTGGTTGCA+TGG + chr1_4:42066342-42066361 Msa0163720:CDS 40.0%
TGACACTTGAACACTCCAAA+TGG - chr1_4:42066388-42066407 None:intergenic 40.0%
CCGAAAACAGTACCTGTTAT+CGG - chr1_4:42066411-42066430 None:intergenic 40.0%
!! CCGATAACAGGTACTGTTTT+CGG + chr1_4:42066408-42066427 Msa0163720:CDS 40.0%
TGCCTTGGTATGAATTTGAG+AGG + chr1_4:42067007-42067026 Msa0163720:intron 40.0%
GTCCTCTCAAATTCATACCA+AGG - chr1_4:42067012-42067031 None:intergenic 40.0%
!! TTTATTCTGGGATGGATTGG+TGG - chr1_4:42067116-42067135 None:intergenic 40.0%
CGACTTCCATTCTTTCTATG+TGG + chr1_4:42067211-42067230 Msa0163720:CDS 40.0%
CTCTTTCTTGCAGCTTCAAT+GGG - chr1_4:42067297-42067316 None:intergenic 40.0%
TTTGTTGCAGCTCTTTGTGA+TGG + chr1_4:42067491-42067510 Msa0163720:intron 40.0%
!! ACAGCTCAGTTTTGGTCTTT+TGG - chr1_4:42067573-42067592 None:intergenic 40.0%
! TTTCTGCTACAGCTCAGTTT+TGG - chr1_4:42067581-42067600 None:intergenic 40.0%
! GGCTTTTCATTATCAACTCC+GGG - chr1_4:42067662-42067681 None:intergenic 40.0%
! CGGCTTTTCATTATCAACTC+CGG - chr1_4:42067663-42067682 None:intergenic 40.0%
!! CGGAGTTGATAATGAAAAGC+CGG + chr1_4:42067661-42067680 Msa0163720:CDS 40.0%
GATAATGAAAAGCCGGATTC+TGG + chr1_4:42067668-42067687 Msa0163720:CDS 40.0%
ATCTTAGGAGGAAAGACTTC+GGG - chr1_4:42067701-42067720 None:intergenic 40.0%
CATCTTAGGAGGAAAGACTT+CGG - chr1_4:42067702-42067721 None:intergenic 40.0%
TTATGCAATGCTGCCATCTT+AGG - chr1_4:42067716-42067735 None:intergenic 40.0%
CAGCATTGCATAAAGTGAGA+TGG + chr1_4:42067723-42067742 Msa0163720:CDS 40.0%
TTAACAAGGGTAGTGAGAGA+TGG + chr1_4:42067750-42067769 Msa0163720:CDS 40.0%
!! TAATGGACTTGTACGTTGTC+AGG + chr1_4:42067790-42067809 Msa0163720:CDS 40.0%
TGCCCTTTACTTTACCTAGG+TGG - chr1_4:42055728-42055747 None:intergenic 45.0%
!!! AACAGGGTTTTAGCTTGTCC+AGG + chr1_4:42055790-42055809 Msa0163720:five_prime_UTR 45.0%
!!! ACAGGGTTTTAGCTTGTCCA+GGG + chr1_4:42055791-42055810 Msa0163720:five_prime_UTR 45.0%
TGCTGATGATTCTGCTACAG+CGG + chr1_4:42055979-42055998 Msa0163720:CDS 45.0%
ACACCATTGCCAAACTCTGT+GGG + chr1_4:42056098-42056117 Msa0163720:CDS 45.0%
TTCTTCTTCCCCACAGAGTT+TGG - chr1_4:42056110-42056129 None:intergenic 45.0%
GGCGATAGTGATACAAACTG+AGG - chr1_4:42056370-42056389 None:intergenic 45.0%
! AGGCAGTGCTAGTCTATGTA+AGG + chr1_4:42056425-42056444 Msa0163720:intron 45.0%
TTGAAGAGGGAAGGGAAAGT+TGG + chr1_4:42056545-42056564 Msa0163720:intron 45.0%
ACAGTGGCAGATGAAAACTG+AGG - chr1_4:42056841-42056860 None:intergenic 45.0%
TTCATCTGCCACTGTTCCTA+AGG + chr1_4:42056846-42056865 Msa0163720:CDS 45.0%
GACTTGTACCTTAGGAACAG+TGG - chr1_4:42056857-42056876 None:intergenic 45.0%
ATGCAAAAGGAGGAGCAACT+TGG + chr1_4:42057022-42057041 Msa0163720:CDS 45.0%
TGCAAAAGGAGGAGCAACTT+GGG + chr1_4:42057023-42057042 Msa0163720:CDS 45.0%
! ATTGGTGTCCTAGGATGCAT+GGG + chr1_4:42057283-42057302 Msa0163720:CDS 45.0%
! GGTAAGGGGCACATAGTATA+TGG + chr1_4:42057522-42057541 Msa0163720:intron 45.0%
CTCACCCACTTGAATCCTTT+AGG - chr1_4:42057782-42057801 None:intergenic 45.0%
TTCAAGTGGGTGAGATGCAA+AGG + chr1_4:42057788-42057807 Msa0163720:intron 45.0%
TCAAGTGGGTGAGATGCAAA+GGG + chr1_4:42057789-42057808 Msa0163720:intron 45.0%
TGGAAAAACACTGCCTTAGG+TGG + chr1_4:42057940-42057959 Msa0163720:intron 45.0%
AAACACTGCCTTAGGTGGTT+TGG + chr1_4:42057945-42057964 Msa0163720:intron 45.0%
AGTATACCGGGGAACAATTG+CGG + chr1_4:42058166-42058185 Msa0163720:intron 45.0%
GCTATACCACTATAACGTGG+TGG - chr1_4:42058204-42058223 None:intergenic 45.0%
TGCTATTATCCCCTGTGATG+TGG + chr1_4:42058235-42058254 Msa0163720:intron 45.0%
GCTATTATCCCCTGTGATGT+GGG + chr1_4:42058236-42058255 Msa0163720:intron 45.0%
AGGAATTACCCACATCACAG+GGG - chr1_4:42058247-42058266 None:intergenic 45.0%
ATGCCAAATGTCAGATGCCA+TGG + chr1_4:42058343-42058362 Msa0163720:intron 45.0%
AGTCCATGGCATCTGACATT+TGG - chr1_4:42058349-42058368 None:intergenic 45.0%
AATGTCAGATGCCATGGACT+TGG + chr1_4:42058349-42058368 Msa0163720:intron 45.0%
TAGCTATTAGGCCAAGTCCA+TGG - chr1_4:42058363-42058382 None:intergenic 45.0%
AAGGATTTAGGTAAGCCAGG+TGG - chr1_4:42058406-42058425 None:intergenic 45.0%
AAAATGGGTGCCTCACTTAC+TGG + chr1_4:42058753-42058772 Msa0163720:CDS 45.0%
TTCTTTCTAGGCCTTCCTCT+AGG - chr1_4:42058915-42058934 None:intergenic 45.0%
! GCATCTGGTAGTGTCTCAAA+TGG + chr1_4:42059053-42059072 Msa0163720:CDS 45.0%
TGATGTTCATCAGAACTGCC+AGG - chr1_4:42059260-42059279 None:intergenic 45.0%
TGTATTCGCAGCAGCTTTCT+TGG - chr1_4:42059318-42059337 None:intergenic 45.0%
GAAAGCTGCTGCGAATACAA+AGG + chr1_4:42059319-42059338 Msa0163720:CDS 45.0%
TGTATTCGGAGCAGCTTTCT+TGG - chr1_4:42059354-42059373 None:intergenic 45.0%
GAAAGCTGCTCCGAATACAA+AGG + chr1_4:42059355-42059374 Msa0163720:CDS 45.0%
GTATGCAGAAGCAGCTTTCT+TGG - chr1_4:42059390-42059409 None:intergenic 45.0%
GTTGTAGCCCAGATACAAGT+AGG + chr1_4:42059465-42059484 Msa0163720:CDS 45.0%
GAGGCAAATCATCAACCACA+TGG + chr1_4:42059512-42059531 Msa0163720:CDS 45.0%
GATGCTTGAGGTTCCAATAC+AGG - chr1_4:42059542-42059561 None:intergenic 45.0%
ATGGGACAAGTAGATGCTTG+AGG - chr1_4:42059554-42059573 None:intergenic 45.0%
GTGTCATGCCTAGCTCATAA+TGG + chr1_4:42059602-42059621 Msa0163720:CDS 45.0%
CCACCTTTCCATTATGAGCT+AGG - chr1_4:42059613-42059632 None:intergenic 45.0%
! CCTAGCTCATAATGGAAAGG+TGG + chr1_4:42059610-42059629 Msa0163720:CDS 45.0%
! CTCATAATGGAAAGGTGGCA+TGG + chr1_4:42059615-42059634 Msa0163720:CDS 45.0%
!! TTCCTCATGCAAGCATCGAA+TGG + chr1_4:42059670-42059689 Msa0163720:CDS 45.0%
!! TCCTCATGCAAGCATCGAAT+GGG + chr1_4:42059671-42059690 Msa0163720:CDS 45.0%
! GGCTATCTTGCTGTCTTGTT+GGG + chr1_4:42059692-42059711 Msa0163720:CDS 45.0%
TGCCGTTGAAATGGTTGCAA+TGG + chr1_4:42060348-42060367 Msa0163720:intron 45.0%
! GTCGTTTGAGGTACCATTGT+GGG - chr1_4:42060540-42060559 None:intergenic 45.0%
! TGTCGTTTGAGGTACCATTG+TGG - chr1_4:42060541-42060560 None:intergenic 45.0%
ATGGGGACTTGGAGATTATG+GGG - chr1_4:42060811-42060830 None:intergenic 45.0%
GATGGGGACTTGGAGATTAT+GGG - chr1_4:42060812-42060831 None:intergenic 45.0%
TGATGGGGACTTGGAGATTA+TGG - chr1_4:42060813-42060832 None:intergenic 45.0%
TCAATGGCAGTGCTATGATG+GGG - chr1_4:42060828-42060847 None:intergenic 45.0%
TTGTATCAATTGCAGGTGGG+AGG + chr1_4:42060977-42060996 Msa0163720:intron 45.0%
TAAACTGCTCTCAGTGCATG+AGG - chr1_4:42061011-42061030 None:intergenic 45.0%
GAGAGCAGTTTATACGCAGA+AGG + chr1_4:42061019-42061038 Msa0163720:CDS 45.0%
AGCAGTTTATACGCAGAAGG+AGG + chr1_4:42061022-42061041 Msa0163720:CDS 45.0%
GCAGTTTATACGCAGAAGGA+GGG + chr1_4:42061023-42061042 Msa0163720:CDS 45.0%
! CCATAGTGGGGTTAAGGAAA+GGG + chr1_4:42061204-42061223 Msa0163720:intron 45.0%
GGAAAGGGTTGGATCCATTA+CGG + chr1_4:42061219-42061238 Msa0163720:intron 45.0%
GAAAGGGTTGGATCCATTAC+GGG + chr1_4:42061220-42061239 Msa0163720:intron 45.0%
GAAGGAACCTCTCAATGCAT+TGG - chr1_4:42061335-42061354 None:intergenic 45.0%
TGGAATAGAGGAGCAACACT+AGG + chr1_4:42062227-42062246 Msa0163720:intron 45.0%
AGTGGTCTAAGGGAGCTATA+GGG + chr1_4:42062474-42062493 Msa0163720:intron 45.0%
! TTAGATGGTTTGGGCATGTG+AGG + chr1_4:42062711-42062730 Msa0163720:intron 45.0%
GGAGACAGCTTAAGAGACAA+TGG + chr1_4:42062776-42062795 Msa0163720:intron 45.0%
TGACGCCATAATATGCTGTC+AGG - chr1_4:42062875-42062894 None:intergenic 45.0%
ACTACATGAGGTCAGCTACA+TGG - chr1_4:42062904-42062923 None:intergenic 45.0%
TGTAGCTGACCTCATGTAGT+TGG + chr1_4:42062904-42062923 Msa0163720:intron 45.0%
TAGTTGGGGTTGCTAAGGAA+GGG + chr1_4:42063276-42063295 Msa0163720:intron 45.0%
! GCCTATACTTTGTTTCGGTG+GGG + chr1_4:42063380-42063399 Msa0163720:CDS 45.0%
TCCCCACCGAAACAAAGTAT+AGG - chr1_4:42063384-42063403 None:intergenic 45.0%
GCCCATGCAACTGTTCTAAT+AGG - chr1_4:42063414-42063433 None:intergenic 45.0%
! TTGCATGGGCTCCTTTTGAA+GGG + chr1_4:42063424-42063443 Msa0163720:CDS 45.0%
!! CATCAGTCTTTTGGCTGAGA+AGG - chr1_4:42063465-42063484 None:intergenic 45.0%
AACTATTCAGGGGTTATGGG+GGG - chr1_4:42063742-42063761 None:intergenic 45.0%
GGGTAACTATTCAGGGGTTA+TGG - chr1_4:42063746-42063765 None:intergenic 45.0%
! GTGTTCAGACATGGTTTGCA+AGG + chr1_4:42064249-42064268 Msa0163720:intron 45.0%
ATAGTAACCGCAGGACATGA+AGG + chr1_4:42064482-42064501 Msa0163720:CDS 45.0%
! GACATGAAGGCCTCAAGTTT+TGG + chr1_4:42064495-42064514 Msa0163720:CDS 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_4:42064616-42064635 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_4:42064613-42064632 Msa0163720:intron 45.0%
GAAAAACTCAAGTCCCGCAA+TGG - chr1_4:42064685-42064704 None:intergenic 45.0%
! GGTTGTTAGCAAGGGTTTTC+GGG - chr1_4:42065177-42065196 None:intergenic 45.0%
!! CTAACAACCAACTTGTTGGG+TGG + chr1_4:42065188-42065207 Msa0163720:intron 45.0%
! GCACAGCATACCAATTTTGC+TGG - chr1_4:42065215-42065234 None:intergenic 45.0%
TGAAGAGATGGCAAGAGTGA+GGG - chr1_4:42065270-42065289 None:intergenic 45.0%
ATGAAGAGATGGCAAGAGTG+AGG - chr1_4:42065271-42065290 None:intergenic 45.0%
!!! TGTTGGGTTGGGTTTTTAGC+TGG - chr1_4:42065304-42065323 None:intergenic 45.0%
GTTTACCAGCTCAAGGTTCA+TGG - chr1_4:42065775-42065794 None:intergenic 45.0%
AGCATTGCGAATGAGTCAAC+TGG + chr1_4:42065888-42065907 Msa0163720:intron 45.0%
!! TTAACAGCCTCTAAGGCTGA+AGG - chr1_4:42066020-42066039 None:intergenic 45.0%
GTAATCCATTTCGTCCTCTG+AGG + chr1_4:42066083-42066102 Msa0163720:intron 45.0%
! GAAAACCATTAGCTTGGCGA+AGG + chr1_4:42066278-42066297 Msa0163720:CDS 45.0%
TGTATATCGTTCCGGTGACA+GGG - chr1_4:42066317-42066336 None:intergenic 45.0%
TACGTAGTACCATGCAACCA+AGG - chr1_4:42066354-42066373 None:intergenic 45.0%
GTTCAAGTGTCACCGATAAC+AGG + chr1_4:42066396-42066415 Msa0163720:CDS 45.0%
TCAGGCATGGTTGCATATTG+TGG + chr1_4:42066677-42066696 Msa0163720:intron 45.0%
GTTGCATATTGTGGTGCAGA+TGG + chr1_4:42066686-42066705 Msa0163720:CDS 45.0%
TTCTAATACCACGCCAGAAG+AGG - chr1_4:42066775-42066794 None:intergenic 45.0%
AGCGGTATCATGGTATGCAA+GGG - chr1_4:42066823-42066842 None:intergenic 45.0%
ATGTGGATCAGTGACTGAAG+AGG + chr1_4:42067228-42067247 Msa0163720:CDS 45.0%
GGGAAAGGAGAGTTTGATAC+TGG - chr1_4:42067277-42067296 None:intergenic 45.0%
TCTTGCAGCTTCAATGGGAA+AGG - chr1_4:42067292-42067311 None:intergenic 45.0%
CCTCTTTCTTGCAGCTTCAA+TGG - chr1_4:42067298-42067317 None:intergenic 45.0%
CCATTGAAGCTGCAAGAAAG+AGG + chr1_4:42067295-42067314 Msa0163720:CDS 45.0%
! GGGTTTGGAATCTGTATCTG+AGG + chr1_4:42067523-42067542 Msa0163720:CDS 45.0%
!! CTGAGGAAGCATTGTCTTCT+CGG + chr1_4:42067540-42067559 Msa0163720:CDS 45.0%
!! TGAGGAAGCATTGTCTTCTC+GGG + chr1_4:42067541-42067560 Msa0163720:CDS 45.0%
ACAGCTCTTGCTTGTAGAGA+TGG + chr1_4:42067620-42067639 Msa0163720:CDS 45.0%
!! TCAACTCCGGGAGTATTTGT+CGG - chr1_4:42067650-42067669 None:intergenic 45.0%
CGAAGTCTTTCCTCCTAAGA+TGG + chr1_4:42067700-42067719 Msa0163720:CDS 45.0%
AGTGAGAGATGGTTGTGCTT+TGG + chr1_4:42067761-42067780 Msa0163720:CDS 45.0%
GTGAGAGATGGTTGTGCTTT+GGG + chr1_4:42067762-42067781 Msa0163720:CDS 45.0%
TGAGAGATGGTTGTGCTTTG+GGG + chr1_4:42067763-42067782 Msa0163720:CDS 45.0%
!!! TTTTAAATATGAATATATTT+TGG - chr1_4:42063585-42063604 None:intergenic 5.0%
!! AAATATATTCATATTTAAAA+AGG + chr1_4:42063585-42063604 Msa0163720:intron 5.0%
!! AATATATTCATATTTAAAAA+GGG + chr1_4:42063586-42063605 Msa0163720:intron 5.0%
GCTACAGCGGCAAATGATGA+AGG + chr1_4:42055992-42056011 Msa0163720:CDS 50.0%
ACAGCGGCAAATGATGAAGG+TGG + chr1_4:42055995-42056014 Msa0163720:CDS 50.0%
! GCAAATGATGAAGGTGGTGG+TGG + chr1_4:42056001-42056020 Msa0163720:CDS 50.0%
GACACCATTGCCAAACTCTG+TGG + chr1_4:42056097-42056116 Msa0163720:CDS 50.0%
CACCATTGCCAAACTCTGTG+GGG + chr1_4:42056099-42056118 Msa0163720:CDS 50.0%
TTCCCCACAGAGTTTGGCAA+TGG - chr1_4:42056104-42056123 None:intergenic 50.0%
GCAAAAGGAGGAGCAACTTG+GGG + chr1_4:42057024-42057043 Msa0163720:CDS 50.0%
! GGGCATTAGATTGGTGTCCT+AGG + chr1_4:42057274-42057293 Msa0163720:CDS 50.0%
! GATTGGTGTCCTAGGATGCA+TGG + chr1_4:42057282-42057301 Msa0163720:CDS 50.0%
! TTGGTGTCCTAGGATGCATG+GGG + chr1_4:42057284-42057303 Msa0163720:CDS 50.0%
CAAGTGGGTGAGATGCAAAG+GGG + chr1_4:42057790-42057809 Msa0163720:intron 50.0%
GACAAACCGCAATTGTTCCC+CGG - chr1_4:42058175-42058194 None:intergenic 50.0%
!! GCAGAGGTGCTGTGCAAATA+TGG + chr1_4:42058775-42058794 Msa0163720:CDS 50.0%
ATCATATCTCCCCGGGAAGA+AGG + chr1_4:42058833-42058852 Msa0163720:CDS 50.0%
GGGACCAAGTACATAGCATC+TGG + chr1_4:42059038-42059057 Msa0163720:CDS 50.0%
GAACTGCCAGGAACTACATC+TGG - chr1_4:42059248-42059267 None:intergenic 50.0%
ACCACATGGTAGCCCTGTAT+TGG + chr1_4:42059526-42059545 Msa0163720:CDS 50.0%
TCCAATACAGGGCTACCATG+TGG - chr1_4:42059530-42059549 None:intergenic 50.0%
GCTAGGCATGACACAACTCT+AGG - chr1_4:42059596-42059615 None:intergenic 50.0%
AGGTGGCATGGGATGTCAAA+TGG + chr1_4:42059627-42059646 Msa0163720:CDS 50.0%
TGGCATGGGATGTCAAATGG+AGG + chr1_4:42059630-42059649 Msa0163720:CDS 50.0%
! GGGCTATCTTGCTGTCTTGT+TGG + chr1_4:42059691-42059710 Msa0163720:CDS 50.0%
! CTTGCTGTCTTGTTGGGCAA+TGG + chr1_4:42059698-42059717 Msa0163720:CDS 50.0%
CTTGTTGGGCAATGGATCTC+TGG + chr1_4:42059706-42059725 Msa0163720:CDS 50.0%
! GAGGTACCATTGTGGGTTAC+TGG - chr1_4:42060533-42060552 None:intergenic 50.0%
! GGAGGGTTTCCAAAGTGCTT+GGG - chr1_4:42060702-42060721 None:intergenic 50.0%
! AGGAGGGTTTCCAAAGTGCT+TGG - chr1_4:42060703-42060722 None:intergenic 50.0%
! AGTGGAGCACTTAAGCAGCT+TGG - chr1_4:42060754-42060773 None:intergenic 50.0%
! TTGGAGATTATGGGGTGCCT+AGG - chr1_4:42060803-42060822 None:intergenic 50.0%
TGAAACGTGGCAGCTTACAG+AGG + chr1_4:42061096-42061115 Msa0163720:CDS 50.0%
ACATAGAGCTGCTGCCATAG+TGG + chr1_4:42061190-42061209 Msa0163720:intron 50.0%
CATAGAGCTGCTGCCATAGT+GGG + chr1_4:42061191-42061210 Msa0163720:intron 50.0%
ATAGAGCTGCTGCCATAGTG+GGG + chr1_4:42061192-42061211 Msa0163720:intron 50.0%
! GCCATAGTGGGGTTAAGGAA+AGG + chr1_4:42061203-42061222 Msa0163720:intron 50.0%
CCCTTTCCTTAACCCCACTA+TGG - chr1_4:42061207-42061226 None:intergenic 50.0%
AGTGGGGTTAAGGAAAGGGT+TGG + chr1_4:42061208-42061227 Msa0163720:intron 50.0%
GTCGTGTAACTGGAGATCAC+AGG - chr1_4:42061301-42061320 None:intergenic 50.0%
GGAATATGCGGTCGTGTAAC+TGG - chr1_4:42061311-42061330 None:intergenic 50.0%
GGAACCTCTCAATGCATTGG+TGG - chr1_4:42061332-42061351 None:intergenic 50.0%
TCACAGCATTCCACTGACAG+TGG + chr1_4:42062070-42062089 Msa0163720:intron 50.0%
! TTACTTGCTGGCTGCCATGA+TGG + chr1_4:42062122-42062141 Msa0163720:CDS 50.0%
! TATCTGTGTAGGGCATCCAG+TGG + chr1_4:42062315-42062334 Msa0163720:intron 50.0%
! ATCTGTGTAGGGCATCCAGT+GGG + chr1_4:42062316-42062335 Msa0163720:intron 50.0%
GAGTGGTCTAAGGGAGCTAT+AGG + chr1_4:42062473-42062492 Msa0163720:intron 50.0%
TCTAAGGGAGCTATAGGGTG+AGG + chr1_4:42062479-42062498 Msa0163720:intron 50.0%
GGTGATGAGGGAAAACGTCA+TGG + chr1_4:42062512-42062531 Msa0163720:intron 50.0%
CTAGTTGGGGTTGCTAAGGA+AGG + chr1_4:42063275-42063294 Msa0163720:intron 50.0%
! GTTGCATGGGCTCCTTTTGA+AGG + chr1_4:42063423-42063442 Msa0163720:CDS 50.0%
ACTATTCAGGGGTTATGGGG+GGG - chr1_4:42063741-42063760 None:intergenic 50.0%
!!! GCGCGCTTTTGAAATCACTG+TGG + chr1_4:42064136-42064155 Msa0163720:intron 50.0%
!!! GCCTCAAGTTTTGGGACCTA+CGG + chr1_4:42064504-42064523 Msa0163720:CDS 50.0%
ACCGTAGGTCCCAAAACTTG+AGG - chr1_4:42064508-42064527 None:intergenic 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr1_4:42064618-42064637 Msa0163720:intron 50.0%
GCAATCCTCACCTTACAAGC+CGG - chr1_4:42064626-42064645 None:intergenic 50.0%
GTTGGGTGGACCAGCAAAAT+TGG + chr1_4:42065202-42065221 Msa0163720:intron 50.0%
AAGAGTGAGGGTCCACATTC+TGG - chr1_4:42065258-42065277 None:intergenic 50.0%
TCTCTCCATGAACCTTGAGC+TGG + chr1_4:42065767-42065786 Msa0163720:intron 50.0%
! TGATTCTCTGGGAAGGTTGG+AGG - chr1_4:42066111-42066130 None:intergenic 50.0%
!! TGGATTGGCAGTCAAAGCCA+AGG + chr1_4:42066140-42066159 Msa0163720:CDS 50.0%
GTGTATATCGTTCCGGTGAC+AGG - chr1_4:42066318-42066337 None:intergenic 50.0%
GTCACCGGAACGATATACAC+TGG + chr1_4:42066318-42066337 Msa0163720:CDS 50.0%
GCAATTACCAGCACCTCTTC+TGG + chr1_4:42066759-42066778 Msa0163720:intron 50.0%
CAGCGGTATCATGGTATGCA+AGG - chr1_4:42066824-42066843 None:intergenic 50.0%
! GAGACGTGGATCTTTTGCCT+TGG + chr1_4:42066992-42067011 Msa0163720:intron 50.0%
TGCAATGCTGCCATCTTAGG+AGG - chr1_4:42067713-42067732 None:intergenic 50.0%
GAGAGATGGTTGTGCTTTGG+GGG + chr1_4:42067764-42067783 Msa0163720:CDS 50.0%
!! TTGTGCTTTGGGGGAGCTAA+TGG + chr1_4:42067773-42067792 Msa0163720:CDS 50.0%
GCGGCAAATGATGAAGGTGG+TGG + chr1_4:42055998-42056017 Msa0163720:CDS 55.0%
! CTTAGGGTTAGCACCACTGC+TGG - chr1_4:42056032-42056051 None:intergenic 55.0%
! CAGCAGTGGTGCTAACCCTA+AGG + chr1_4:42056030-42056049 Msa0163720:CDS 55.0%
AGCACCTCTGCCAGTAAGTG+AGG - chr1_4:42058766-42058785 None:intergenic 55.0%
GCCCATTCGATGCTTGCATG+AGG - chr1_4:42059675-42059694 None:intergenic 55.0%
TTGTAGGTGGGGGAGGAAAG+GGG - chr1_4:42060666-42060685 None:intergenic 55.0%
GTTGTAGGTGGGGGAGGAAA+GGG - chr1_4:42060667-42060686 None:intergenic 55.0%
AGTTGTAGGTGGGGGAGGAA+AGG - chr1_4:42060668-42060687 None:intergenic 55.0%
TCAGTAGTTGTAGGTGGGGG+AGG - chr1_4:42060673-42060692 None:intergenic 55.0%
! GCAGTGCTATGATGGGGACT+TGG - chr1_4:42060822-42060841 None:intergenic 55.0%
GCTCTCAGTGCATGAGGAAG+AGG - chr1_4:42061005-42061024 None:intergenic 55.0%
! CTGCTGCCATAGTGGGGTTA+AGG + chr1_4:42061198-42061217 Msa0163720:intron 55.0%
GCATTCCACTGACAGTGGAG+TGG + chr1_4:42062075-42062094 Msa0163720:intron 55.0%
ACTGACCACTCCACTGTCAG+TGG - chr1_4:42062083-42062102 None:intergenic 55.0%
! TGCTGGCTGCCATGATGGAA+CGG + chr1_4:42062127-42062146 Msa0163720:CDS 55.0%
CTAAGGAAGGGAGCTGTGCT+GGG + chr1_4:42063288-42063307 Msa0163720:intron 55.0%
CTTGAGGCCTTCATGTCCTG+CGG - chr1_4:42064492-42064511 None:intergenic 55.0%
TGCTGGTCCACCCAACAAGT+TGG - chr1_4:42065198-42065217 None:intergenic 55.0%
AGGAGCCTCAGAGGACGAAA+TGG - chr1_4:42066091-42066110 None:intergenic 55.0%
TGCAGCCTTCGCCAAGCTAA+TGG - chr1_4:42066286-42066305 None:intergenic 55.0%
GCAAATGACCTCCCTGTCAC+CGG + chr1_4:42066303-42066322 Msa0163720:CDS 55.0%
ATATCGTTCCGGTGACAGGG+AGG - chr1_4:42066314-42066333 None:intergenic 55.0%
!!! TGGTGCTGCTGTCCGTTTTC+AGG + chr1_4:42066706-42066725 Msa0163720:CDS 55.0%
GCAAGAGCTGTGCTTTCAGC+TGG - chr1_4:42067611-42067630 None:intergenic 55.0%
! GGTGCACCGACAAATACTCC+CGG + chr1_4:42067641-42067660 Msa0163720:CDS 55.0%
TCGGGAGTAGTCCCAGAATC+CGG - chr1_4:42067683-42067702 None:intergenic 55.0%
! GGTGGTGGTAGTACCAGCAG+TGG + chr1_4:42056016-42056035 Msa0163720:CDS 60.0%
TCAGGCTCCCCATGCATCCT+AGG - chr1_4:42057294-42057313 None:intergenic 60.0%
GGTGCCTCACTTACTGGCAG+AGG + chr1_4:42058759-42058778 Msa0163720:CDS 60.0%
GCTAAGGAAGGGAGCTGTGC+TGG + chr1_4:42063287-42063306 Msa0163720:intron 60.0%
GAAGGTTGGAGGAGCCTCAG+AGG - chr1_4:42066100-42066119 None:intergenic 60.0%
TACCAGCACCTCTTCTGGCG+TGG + chr1_4:42066764-42066783 Msa0163720:intron 60.0%
! TACCACGCCAGAAGAGGTGC+TGG - chr1_4:42066769-42066788 None:intergenic 60.0%
GCTGTTGCTGCTCATCCGCC+TGG + chr1_4:42058717-42058736 Msa0163720:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 42055693 42068022 42055693 ID=Msa0163720;Name=Msa0163720
chr1_4 mRNA 42055693 42068022 42055693 ID=Msa0163720-mRNA-1;Parent=Msa0163720;Name=Msa0163720-mRNA-1;_AED=0.14;_eAED=0.14;_QI=179|0.92|0.86|1|1|1|15|163|971
chr1_4 exon 42055693 42056191 42055693 ID=Msa0163720-mRNA-1:exon:12160;Parent=Msa0163720-mRNA-1
chr1_4 exon 42056732 42056867 42056732 ID=Msa0163720-mRNA-1:exon:12161;Parent=Msa0163720-mRNA-1
chr1_4 exon 42057016 42057068 42057016 ID=Msa0163720-mRNA-1:exon:12162;Parent=Msa0163720-mRNA-1
chr1_4 exon 42057242 42057332 42057242 ID=Msa0163720-mRNA-1:exon:12163;Parent=Msa0163720-mRNA-1
chr1_4 exon 42058711 42059732 42058711 ID=Msa0163720-mRNA-1:exon:12164;Parent=Msa0163720-mRNA-1
chr1_4 exon 42060992 42061117 42060992 ID=Msa0163720-mRNA-1:exon:12165;Parent=Msa0163720-mRNA-1
chr1_4 exon 42062076 42062148 42062076 ID=Msa0163720-mRNA-1:exon:12166;Parent=Msa0163720-mRNA-1
chr1_4 exon 42063192 42063237 42063192 ID=Msa0163720-mRNA-1:exon:12167;Parent=Msa0163720-mRNA-1
chr1_4 exon 42063373 42063445 42063373 ID=Msa0163720-mRNA-1:exon:12168;Parent=Msa0163720-mRNA-1
chr1_4 exon 42064460 42064525 42064460 ID=Msa0163720-mRNA-1:exon:12169;Parent=Msa0163720-mRNA-1
chr1_4 exon 42066084 42066161 42066084 ID=Msa0163720-mRNA-1:exon:12170;Parent=Msa0163720-mRNA-1
chr1_4 exon 42066245 42066429 42066245 ID=Msa0163720-mRNA-1:exon:12171;Parent=Msa0163720-mRNA-1
chr1_4 exon 42066681 42066727 42066681 ID=Msa0163720-mRNA-1:exon:12172;Parent=Msa0163720-mRNA-1
chr1_4 exon 42067172 42067412 42067172 ID=Msa0163720-mRNA-1:exon:12173;Parent=Msa0163720-mRNA-1
chr1_4 exon 42067501 42068022 42067501 ID=Msa0163720-mRNA-1:exon:12174;Parent=Msa0163720-mRNA-1
chr1_4 five_prime_UTR 42055693 42055871 42055693 ID=Msa0163720-mRNA-1:five_prime_utr;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42055872 42056191 42055872 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42056732 42056867 42056732 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42057016 42057068 42057016 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42057242 42057332 42057242 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42058711 42059732 42058711 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42060992 42061117 42060992 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42062076 42062148 42062076 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42063192 42063237 42063192 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42063373 42063445 42063373 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42064460 42064525 42064460 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42066084 42066161 42066084 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42066245 42066429 42066245 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42066681 42066727 42066681 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42067172 42067412 42067172 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 CDS 42067501 42067859 42067501 ID=Msa0163720-mRNA-1:cds;Parent=Msa0163720-mRNA-1
chr1_4 three_prime_UTR 42067860 42068022 42067860 ID=Msa0163720-mRNA-1:three_prime_utr;Parent=Msa0163720-mRNA-1
Gene Sequence

>Msa0163720

ATGGAAGAGGAAAATGAGAACCTAACTATTGCCACACTATTTAATATCAAAGAGAAAAAGAAGAAAAAGAAGAAAAAGACGAAGGCAAATAAAGAGAGCGAAAGAGTTGCTGATGATTCTGCTACAGCGGCAAATGATGAAGGTGGTGGTGGTAGTACCAGCAGTGGTGCTAACCCTAAGGTTTCTTTGTTTGATATCTCTGTCGAGAATTTCTTTGAAGACATGGACACCATTGCCAAACTCTGTGGGGAAGAAGAACGCAACACTGCTGTTGAGCAAAGCGAGATCAAGAGAATGTTTTCTTCCGTCACTTTTTTAAGAGAATGGAAGGATTTTAAATATCCATCTAAAAGCATTAGGTTTACTTACGGAATTGGGAGCTCTGAGTGTTATGAGAGAAATGATATCAAAGATGACATAAACTTACCTCAGTTTTCATCTGCCACTGTTCCTAAGCATAATATGCAAAAGGAGGAGCAACTTGGGGATGCCAAACCTCAAGAATCCAAAGACTTTGTGATGAATGTTGGAGGTTCTGTATGGGCATTAGATTGGTGTCCTAGGATGCATGGGGAGCCTGATTGTTCAATTAAATGTGAGTTCATTGCTGTTGCTGCTCATCCGCCTGGTTCATCTTATCACAAAATGGGTGCCTCACTTACTGGCAGAGGTGCTGTGCAAATATGGTGTCTTCTAAATATCAGGGAACACAGCGAAGAAGTATCATATCTCCCCGGGAAGAAGGAAAAAAAACCTAAAAAAGACACGTGCACAAATGACAAATCGATAGAAATAAAGAGGCCTAGAGGAAGGCCTAGAAAGAATCCTACTGAAAACAACGAAGCAATATCTCCTATTACAAACAAGAGAAAAAGAGGAAGACCAAAAAAGAATCCAACTGTAATAGCAGTGGATAGTACAAATTGTGGGACCAAGTACATAGCATCTGGTAGTGTCTCAAATGGGAATAATGAAAACAATGAAGAAATACTCCGTATTACATACAAGAGTAAAAAAAGGCCTAAAGGACGACCGAAAAAGAATTCAAAAGATGGAACAGTGAGTGATCCAAATTGTGAGAACCAATTTGTTCCTCTTACTGTTCAACTTCCAGATTCAGCTGAATTTATTTCTCCAGATGTAGTTCCTGGCAGTTCTGATGAACATCATTCACAACAATTTTCTAATACAAAGGGAAAGAATGCCAAGAAAGCTGCTGCGAATACAAAGGGAAAGAATGCCAAGAAAGCTGCTCCGAATACAAAGGGAAAGAATGCCAAGAAAGCTGCTTCTGCATACGATTCAGAAACTCTTGTTGCAAGAAGTAGGTTGGATATTAATCATAGGGAAAGAAGTTGTAGCCCAGATACAAGTAGGCCATTATTGATTCAGTGTGAGAATGAGGCAAATCATCAACCACATGGTAGCCCTGTATTGGAACCTCAAGCATCTACTTGTCCCATTCCACAAAATGTAGCATTGCCTAGAGTTGTGTCATGCCTAGCTCATAATGGAAAGGTGGCATGGGATGTCAAATGGAGGCCTCTTAGCAATCTTGATTCCTCATGCAAGCATCGAATGGGCTATCTTGCTGTCTTGTTGGGCAATGGATCTCTGGAAGTGTGGGAGGTTCCTCTTCCTCATGCACTGAGAGCAGTTTATACGCAGAAGGAGGGCACAGATCCTCGTTTTATAAAATTGGAGCCTGTATTCAAATGCTCAATGTTGAAACGTGGCAGCTTACAGAGCATTCCACTGACAGTGGAGTGGTCAGTTACTCCCCCTCATGATTATTTACTTGCTGGCTGCCATGATGGAACGGTTGCTCTGTGGAAATTCTCTACAAATTCTTCATCTAAATGTGATGATACAAAGCCTATACTTTGTTTCGGTGGGGATACTGTTCCTATTAGAACAGTTGCATGGGCTCCTTTTGAAGGTGATCCAGAGACTTCTAACTTAATAGTAACCGCAGGACATGAAGGCCTCAAGTTTTGGGACCTACGTAATCCATTTCGTCCTCTGAGGCTCCTCCAACCTTCCCAGAGAATCATTTACAGTCTGGATTGGCAGTCAAAGCCAAGCTGTATCATTATGTGTTTTGAGGATGGAACAATGAAAACCATTAGCTTGGCGAAGGCTGCAAATGACCTCCCTGTCACCGGAACGATATACACTGGAAAGAAACAACCTTGGTTGCATGGTACTACGTATTCATCTTATGCCATTTGGAGTGTTCAAGTGTCACCGATAACAGGTACTGTTTTCGGCATGGTTGCATATTGTGGTGCAGATGGTGCTGCTGTCCGTTTTCAGCTAACAACTAAATCAGTGGAGACTGATCATTCGCACAATCGACTTCCATTCTTTCTATGTGGATCAGTGACTGAAGAGGAATCAACTATCATTGTCAACACTCCAGTATCAAACTCTCCTTTCCCATTGAAGCTGCAAGAAAGAGGCAGATATTCAGAATCTTTCCGAGACTTATTATCCAAAAGCAGAATTGCGTTTAATCAAATGATAAAAGCTTCTACTGATGATTGTCAGATTTTAGCTCTTTGTGATGGTGATAATATGGGTTTGGAATCTGTATCTGAGGAAGCATTGTCTTCTCGGGAGCAAACCAAAAGACCAAAACTGAGCTGTAGCAGAAAGAAAAAACCAGCTGAAAGCACAGCTCTTGCTTGTAGAGATGGTGCACCGACAAATACTCCCGGAGTTGATAATGAAAAGCCGGATTCTGGGACTACTCCCGAAGTCTTTCCTCCTAAGATGGCAGCATTGCATAAAGTGAGATGGAACATTAACAAGGGTAGTGAGAGATGGTTGTGCTTTGGGGGAGCTAATGGACTTGTACGTTGTCAGGAAATTGTTTACTCTAATATTGATAAGAAAATGGCCTTGAAGAGATGA
Protein sequence

>Msa0163720

MEEENENLTIATLFNIKEKKKKKKKKTKANKESERVADDSATAANDEGGGGSTSSGANPKVSLFDISVENFFEDMDTIAKLCGEEERNTAVEQSEIKRMFSSVTFLREWKDFKYPSKSIRFTYGIGSSECYERNDIKDDINLPQFSSATVPKHNMQKEEQLGDAKPQESKDFVMNVGGSVWALDWCPRMHGEPDCSIKCEFIAVAAHPPGSSYHKMGASLTGRGAVQIWCLLNIREHSEEVSYLPGKKEKKPKKDTCTNDKSIEIKRPRGRPRKNPTENNEAISPITNKRKRGRPKKNPTVIAVDSTNCGTKYIASGSVSNGNNENNEEILRITYKSKKRPKGRPKKNSKDGTVSDPNCENQFVPLTVQLPDSAEFISPDVVPGSSDEHHSQQFSNTKGKNAKKAAANTKGKNAKKAAPNTKGKNAKKAASAYDSETLVARSRLDINHRERSCSPDTSRPLLIQCENEANHQPHGSPVLEPQASTCPIPQNVALPRVVSCLAHNGKVAWDVKWRPLSNLDSSCKHRMGYLAVLLGNGSLEVWEVPLPHALRAVYTQKEGTDPRFIKLEPVFKCSMLKRGSLQSIPLTVEWSVTPPHDYLLAGCHDGTVALWKFSTNSSSKCDDTKPILCFGGDTVPIRTVAWAPFEGDPETSNLIVTAGHEGLKFWDLRNPFRPLRLLQPSQRIIYSLDWQSKPSCIIMCFEDGTMKTISLAKAANDLPVTGTIYTGKKQPWLHGTTYSSYAIWSVQVSPITGTVFGMVAYCGADGAAVRFQLTTKSVETDHSHNRLPFFLCGSVTEEESTIIVNTPVSNSPFPLKLQERGRYSESFRDLLSKSRIAFNQMIKASTDDCQILALCDGDNMGLESVSEEALSSREQTKRPKLSCSRKKKPAESTALACRDGAPTNTPGVDNEKPDSGTTPEVFPPKMAALHKVRWNINKGSERWLCFGGANGLVRCQEIVYSNIDKKMALKR*