Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127300 | BBH06709.1 | 61.620 | 284 | 77 | 3 | 23 | 274 | 8 | 291 | 1.35e-120 | 356 |
| Msa0127300 | BBH06709.1 | 70.229 | 131 | 37 | 1 | 7 | 137 | 154 | 282 | 1.41e-53 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127300 | sp|P29063|PR4B_TOBAC | 67.391 | 138 | 44 | 1 | 1 | 137 | 1 | 138 | 8.26e-61 | 192 |
| Msa0127300 | sp|P29063|PR4B_TOBAC | 64.865 | 148 | 49 | 2 | 128 | 274 | 2 | 147 | 4.81e-60 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127300 | A0A4Y1RR05 | 61.620 | 284 | 77 | 3 | 23 | 274 | 8 | 291 | 6.46e-121 | 356 |
| Msa0127300 | A0A4Y1RR05 | 70.229 | 131 | 37 | 1 | 7 | 137 | 154 | 282 | 6.75e-54 | 186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025460 | Msa0127300 | 0.832293 | 1.026880e-55 | -8.615850e-47 |
| Msa0032270 | Msa0127300 | 0.843156 | 1.666069e-58 | -8.615850e-47 |
| Msa0072990 | Msa0127300 | 0.813969 | 1.955098e-51 | -8.615850e-47 |
| Msa0074090 | Msa0127300 | 0.899616 | 1.662105e-77 | -8.615850e-47 |
| Msa0127300 | Msa0166320 | 0.846740 | 1.796467e-59 | -8.615850e-47 |
| Msa0127300 | Msa0172410 | 0.902840 | 6.425058e-79 | -8.615850e-47 |
| Msa0127300 | Msa0329700 | 0.807414 | 5.113775e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127300 | MtrunA17_Chr1g0190641 | 97.101 | 138 | 4 | 0 | 137 | 274 | 4 | 141 | 1.12e-97 | 282 |
| Msa0127300 | MtrunA17_Chr1g0190641 | 58.015 | 131 | 54 | 1 | 7 | 137 | 3 | 132 | 7.19e-50 | 161 |
| Msa0127300 | MtrunA17_Chr1g0190651 | 97.080 | 137 | 4 | 0 | 1 | 137 | 1 | 137 | 2.26e-94 | 274 |
| Msa0127300 | MtrunA17_Chr1g0190651 | 57.534 | 146 | 61 | 1 | 130 | 274 | 1 | 146 | 3.28e-57 | 180 |
| Msa0127300 | MtrunA17_Chr1g0190671 | 83.916 | 143 | 23 | 0 | 1 | 143 | 1 | 143 | 6.87e-84 | 248 |
| Msa0127300 | MtrunA17_Chr1g0190671 | 58.696 | 138 | 56 | 1 | 136 | 272 | 7 | 144 | 2.27e-55 | 175 |
| Msa0127300 | MtrunA17_Chr1g0190661 | 84.672 | 137 | 21 | 0 | 1 | 137 | 1 | 137 | 9.05e-83 | 244 |
| Msa0127300 | MtrunA17_Chr1g0190661 | 60.741 | 135 | 49 | 2 | 142 | 272 | 10 | 144 | 4.04e-56 | 177 |
| Msa0127300 | MtrunA17_Chr7g0274181 | 70.085 | 117 | 35 | 0 | 158 | 274 | 70 | 186 | 2.34e-59 | 187 |
| Msa0127300 | MtrunA17_Chr7g0274181 | 70.909 | 110 | 32 | 0 | 29 | 138 | 69 | 178 | 2.65e-52 | 169 |
| Msa0127300 | MtrunA17_Chr6g0484021 | 50.318 | 157 | 58 | 4 | 137 | 274 | 26 | 181 | 1.12e-42 | 153 |
| Msa0127300 | MtrunA17_Chr6g0484021 | 51.748 | 143 | 49 | 4 | 10 | 135 | 31 | 170 | 1.35e-38 | 142 |
| Msa0127300 | MtrunA17_Chr6g0483971 | 53.030 | 132 | 57 | 3 | 144 | 272 | 13 | 142 | 5.51e-41 | 143 |
| Msa0127300 | MtrunA17_Chr6g0483971 | 51.538 | 130 | 56 | 3 | 10 | 137 | 11 | 135 | 1.72e-37 | 134 |
| Msa0127300 | MtrunA17_Chr6g0484031 | 42.069 | 145 | 72 | 3 | 137 | 273 | 6 | 146 | 1.01e-31 | 122 |
| Msa0127300 | MtrunA17_Chr6g0484031 | 46.269 | 134 | 60 | 3 | 11 | 137 | 10 | 138 | 3.68e-30 | 118 |
| Msa0127300 | MtrunA17_Chr6g0484041 | 47.552 | 143 | 55 | 5 | 10 | 137 | 23 | 160 | 2.81e-30 | 119 |
| Msa0127300 | MtrunA17_Chr6g0484041 | 42.000 | 150 | 69 | 4 | 139 | 272 | 20 | 167 | 3.72e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127300 | AT3G04720.1 | 67.227 | 119 | 39 | 0 | 156 | 274 | 75 | 193 | 1.02e-57 | 184 |
| Msa0127300 | AT3G04720.1 | 71.053 | 114 | 33 | 0 | 24 | 137 | 71 | 184 | 6.48e-53 | 171 |
Find 77 sgRNAs with CRISPR-Local
Find 443 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCCTTCTGTGGACCTGC+TGG | 0.294447 | 1_3:+56554451 | Msa0127300:CDS |
| TTGTCATGGCGTAGCAAATA+TGG | 0.300884 | 1_3:+56554424 | Msa0127300:CDS |
| TTGTCATGGCGTAGCAAATA+TGG | 0.308099 | 1_3:+56548338 | Msa0127300:CDS |
| TTGGTATTGTGTTTCCTTGT+TGG | 0.316830 | 1_3:+56548185 | Msa0127300:CDS |
| ATTGTTCTGTGTTCTTGTTT+TGG | 0.345122 | 1_3:+56554285 | Msa0127300:CDS |
| TCTCTGCCTGTTGGCCCAGC+TGG | 0.347389 | 1_3:-56548380 | None:intergenic |
| ATAACCCTCAGAATATTAAC+TGG | 0.349154 | 1_3:+56548264 | Msa0127300:CDS |
| ACAACCCTGAGCAACATAAC+TGG | 0.370802 | 1_3:+56554350 | Msa0127300:CDS |
| TTCTTGTGGCCGTTGCTTGA+GGG | 0.373798 | 1_3:+56554489 | Msa0127300:CDS |
| TTCTATCTGAGTCGAGCCTT+TGG | 0.375815 | 1_3:-56555070 | None:intergenic |
| TAGGTGACAAACACTAAAAC+TGG | 0.376685 | 1_3:+56554978 | Msa0127300:intron |
| CAAGGGCTGGTTTGCATCCC+AGG | 0.379158 | 1_3:-56548318 | None:intergenic |
| GTCAGAGTGCAAACAATGTT+AGG | 0.382334 | 1_3:+56548225 | Msa0127300:CDS |
| ACAGAGAAAGTTAAGCTTGT+TGG | 0.396149 | 1_3:+56548166 | Msa0127300:CDS |
| CAGGTGACAAATACTGCAAC+TGG | 0.420771 | 1_3:+56550886 | Msa0127300:intron |
| TGTGGACCAGCTGGGCCAAC+AGG | 0.421055 | 1_3:+56548374 | Msa0127300:CDS |
| CTTCTTGTGGCCGTTGCTTG+AGG | 0.421339 | 1_3:+56554488 | Msa0127300:CDS |
| CTGCCTTCTGTGGACCTGCT+GGG | 0.422750 | 1_3:+56554452 | Msa0127300:CDS |
| AAGTCCCAGTTATGTTGCTC+AGG | 0.425651 | 1_3:-56554355 | None:intergenic |
| TGTGGACCTGCTGGGCCTCA+AGG | 0.438565 | 1_3:+56554460 | Msa0127300:CDS |
| TTATTGATCAATGCCACAAT+GGG | 0.441698 | 1_3:+56555021 | Msa0127300:CDS |
| AGATAGAAGTGGGAATGCTC+AGG | 0.461924 | 1_3:+56555085 | Msa0127300:CDS |
| GCTTGGCCTTGAGGCCCAGC+AGG | 0.467802 | 1_3:-56554466 | None:intergenic |
| CCAGTGTATACTGTGCTACC+TGG | 0.477513 | 1_3:+56548300 | Msa0127300:CDS |
| AAATACTGCAACTGGAGCTC+AGG | 0.488941 | 1_3:+56550894 | Msa0127300:CDS |
| ATCTAAGTCCAGTCCACCAT+TGG | 0.492671 | 1_3:-56550944 | None:intergenic |
| TCAAATTGATACCAATGGAC+AGG | 0.496103 | 1_3:+56550981 | Msa0127300:CDS |
| TGCTACGCCATGACAAGGGC+TGG | 0.498360 | 1_3:-56548331 | None:intergenic |
| CCAGTGCTCCAATGGTGGAC+TGG | 0.503700 | 1_3:+56550936 | Msa0127300:CDS |
| CCAGTCCACCATTGGAGCAC+TGG | 0.503905 | 1_3:-56550936 | None:intergenic |
| AGCAACGGCCACAAGAAGCT+TGG | 0.504478 | 1_3:-56554483 | None:intergenic |
| TGCTACGCCATGACAAAGGC+TGG | 0.514008 | 1_3:-56554417 | None:intergenic |
| CCGCAAGAATCTCTGCCTGT+TGG | 0.525418 | 1_3:-56548389 | None:intergenic |
| TGGCCCAGCTGGTCCACAAA+AGG | 0.525504 | 1_3:-56548369 | None:intergenic |
| TGGACGTTGGTGTGTTCCAA+AGG | 0.527318 | 1_3:+56555054 | Msa0127300:CDS |
| ATTCTGAACGCCCTGTCCAT+TGG | 0.534339 | 1_3:-56550992 | None:intergenic |
| TTCAATCAAATTGATACCAA+TGG | 0.541175 | 1_3:+56550976 | Msa0127300:CDS |
| TAATCCCAGTTAATATTCTG+AGG | 0.543703 | 1_3:-56548269 | None:intergenic |
| CCTCAAGGCCAAGCTTCTTG+TGG | 0.552466 | 1_3:+56554475 | Msa0127300:CDS |
| CAACCCTGAGCAACATAACT+GGG | 0.553138 | 1_3:+56554351 | Msa0127300:CDS |
| AGGCCCAGCAGGTCCACAGA+AGG | 0.557934 | 1_3:-56554455 | None:intergenic |
| TCAGAGTGCAAACAATGTTA+GGG | 0.559123 | 1_3:+56548226 | Msa0127300:CDS |
| TCAGGTAACGGTGAGAATAG+TGG | 0.560842 | 1_3:+56550912 | Msa0127300:CDS |
| AATGGACAGGGCGTTCAGAA+TGG | 0.563067 | 1_3:+56550994 | Msa0127300:CDS |
| ATGCAGACCAGCCTTTGTCA+TGG | 0.566521 | 1_3:+56554410 | Msa0127300:CDS |
| AGAACAATGACAACATGCAT+AGG | 0.568790 | 1_3:-56554270 | None:intergenic |
| ATAGTGGACCAGTGCTCCAA+TGG | 0.570594 | 1_3:+56550928 | Msa0127300:CDS |
| CATGGCGTAGCAAATATGGC+TGG | 0.575280 | 1_3:+56554428 | Msa0127300:CDS |
| TATGGCTGGACTGCCTTCTG+TGG | 0.577035 | 1_3:+56554442 | Msa0127300:CDS |
| CCACAAGAAGCTTGGCCTTG+AGG | 0.579744 | 1_3:-56554475 | None:intergenic |
| GAACAATGACAACATGCATA+GGG | 0.581805 | 1_3:-56554269 | None:intergenic |
| GGCTCGACTCAGATAGAAGT+GGG | 0.582732 | 1_3:+56555075 | Msa0127300:CDS |
| ATGCAAACCAGCCCTTGTCA+TGG | 0.583448 | 1_3:+56548324 | Msa0127300:CDS |
| ATATTTGCTACGCCATGACA+AGG | 0.584472 | 1_3:-56548336 | None:intergenic |
| ATTATTGATCAATGCCACAA+TGG | 0.589070 | 1_3:+56555020 | Msa0127300:CDS |
| AGTCCCAGTTATGTTGCTCA+GGG | 0.592637 | 1_3:-56554354 | None:intergenic |
| CAGTGTATACTGTGCTACCT+GGG | 0.602353 | 1_3:+56548301 | Msa0127300:CDS |
| AATCCCAGTTAATATTCTGA+GGG | 0.602743 | 1_3:-56548268 | None:intergenic |
| TGCAACTGGAGCTCAGGTAA+CGG | 0.602926 | 1_3:+56550900 | Msa0127300:CDS |
| CATGGCGTAGCAAATATGGT+TGG | 0.604474 | 1_3:+56548342 | Msa0127300:CDS |
| CAAATTGATACCAATGGACA+GGG | 0.605839 | 1_3:+56550982 | Msa0127300:CDS |
| AGGGTTGTATAAATTAAATG+TGG | 0.608521 | 1_3:-56554335 | None:intergenic |
| GTGGACCAGTGCTCCAATGG+TGG | 0.625188 | 1_3:+56550931 | Msa0127300:CDS |
| TATTTGCTACGCCATGACAA+AGG | 0.626209 | 1_3:-56554421 | None:intergenic |
| GATAGAAGTGGGAATGCTCA+GGG | 0.629789 | 1_3:+56555086 | Msa0127300:CDS |
| TAACCCTCAGAATATTAACT+GGG | 0.635981 | 1_3:+56548265 | Msa0127300:CDS |
| CCAAGCATACCCTCAAGCAA+CGG | 0.639130 | 1_3:-56554498 | None:intergenic |
| ATTGATCAATGCCACAATGG+GGG | 0.639653 | 1_3:+56555023 | Msa0127300:CDS |
| TGTGTGCAAATATATAGACT+TGG | 0.640179 | 1_3:-56548100 | None:intergenic |
| AGGCTCGACTCAGATAGAAG+TGG | 0.640187 | 1_3:+56555074 | Msa0127300:CDS |
| TCACTAACATCGTTCCAACA+AGG | 0.656226 | 1_3:-56548199 | None:intergenic |
| TATTTGCTACGCCATGACAA+GGG | 0.664421 | 1_3:-56548335 | None:intergenic |
| CCAACAGGCAGAGATTCTTG+CGG | 0.667208 | 1_3:+56548389 | Msa0127300:CDS |
| CCAGGTAGCACAGTATACAC+TGG | 0.672657 | 1_3:-56548300 | None:intergenic |
| TATTGATCAATGCCACAATG+GGG | 0.681120 | 1_3:+56555022 | Msa0127300:CDS |
| ATTAAATGTGGACTGCACAG+TGG | 0.706777 | 1_3:-56554323 | None:intergenic |
| GTTGGAACGATGTTAGTGAG+TGG | 0.727260 | 1_3:+56548203 | Msa0127300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTTTCAAAAAAAAATTA+AGG | - | chr1_3:56548605-56548624 | None:intergenic | 10.0% |
| !! | TTTGAAAGAAAAAAAAAATA+AGG | + | chr1_3:56548614-56548633 | Msa0127300:intron | 10.0% |
| !!! | TAAAAATTAAGTTATTTTCT+TGG | + | chr1_3:56548673-56548692 | Msa0127300:intron | 10.0% |
| !! | AATTATATTTGTATAGTTTA+TGG | + | chr1_3:56549036-56549055 | Msa0127300:intron | 10.0% |
| !!! | TAAAATAATTATTTAGAATC+CGG | + | chr1_3:56550310-56550329 | Msa0127300:intron | 10.0% |
| !! | TTTAATTAGTAATAATATTG+TGG | + | chr1_3:56550848-56550867 | Msa0127300:intron | 10.0% |
| !!! | AAATAAATTAATTTGAAGTT+AGG | + | chr1_3:56551429-56551448 | Msa0127300:intron | 10.0% |
| !! | ATAATTACATTATATATTTG+TGG | - | chr1_3:56551814-56551833 | None:intergenic | 10.0% |
| !!! | CATTTTGAATATAAAAATTT+AGG | + | chr1_3:56552579-56552598 | Msa0127300:intron | 10.0% |
| !!! | ATGATGTTATATTAAATTTT+TGG | - | chr1_3:56552922-56552941 | None:intergenic | 10.0% |
| !! | AAATTTAATATAACATCATA+AGG | + | chr1_3:56552923-56552942 | Msa0127300:intron | 10.0% |
| !!! | AATGATAAAATATTTGATTT+GGG | - | chr1_3:56553174-56553193 | None:intergenic | 10.0% |
| !!! | AATTTAATAATTTTTTAACG+AGG | + | chr1_3:56553856-56553875 | Msa0127300:intron | 10.0% |
| !!! | TTTAAAATTTATATATTGGA+TGG | + | chr1_3:56554592-56554611 | Msa0127300:intron | 10.0% |
| !! | ATATTAGTTGATCATTTATA+AGG | + | chr1_3:56548565-56548584 | Msa0127300:intron | 15.0% |
| !! | TTCAAAAAAAAATTAAGGAT+AGG | - | chr1_3:56548600-56548619 | None:intergenic | 15.0% |
| !! | CATTATATTTATAATGGTTT+AGG | - | chr1_3:56548859-56548878 | None:intergenic | 15.0% |
| !! | ACTACTCATTATATTTATAA+TGG | - | chr1_3:56548865-56548884 | None:intergenic | 15.0% |
| !!! | TATGTGAGATATTATTTTTT+AGG | + | chr1_3:56549360-56549379 | Msa0127300:intron | 15.0% |
| !! | TTAAATATATATAGTTCAGA+TGG | + | chr1_3:56549635-56549654 | Msa0127300:intron | 15.0% |
| !! | AAAACTATCATTGATATTAA+AGG | - | chr1_3:56550012-56550031 | None:intergenic | 15.0% |
| !! | AATTATCAAACAAAATAACA+TGG | + | chr1_3:56550043-56550062 | Msa0127300:intron | 15.0% |
| !! | TATAAAAAATTATCAAACTG+TGG | - | chr1_3:56550292-56550311 | None:intergenic | 15.0% |
| !!! | AAATTTCTACTTTTAGTTTT+AGG | + | chr1_3:56550704-56550723 | Msa0127300:intron | 15.0% |
| !!! | AGTTTTATTTATGGTATTTA+AGG | - | chr1_3:56551134-56551153 | None:intergenic | 15.0% |
| !!! | ATTTTTAGATTGAGTAAAAA+AGG | - | chr1_3:56551945-56551964 | None:intergenic | 15.0% |
| !!! | TTTTCAATATATATTTGACT+TGG | - | chr1_3:56552485-56552504 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTTTTTTTGCCT+TGG | + | chr1_3:56552782-56552801 | Msa0127300:intron | 15.0% |
| !!! | TTTTAATTTTTTTTTGCCTT+GGG | + | chr1_3:56552783-56552802 | Msa0127300:intron | 15.0% |
| !!! | TCTTAAATCTTTTCTATATT+CGG | - | chr1_3:56553032-56553051 | None:intergenic | 15.0% |
| !! | GAATGATAAAATATTTGATT+TGG | - | chr1_3:56553175-56553194 | None:intergenic | 15.0% |
| !!! | ATCTTACTTAAGTTTTTAAA+TGG | + | chr1_3:56553463-56553482 | Msa0127300:intron | 15.0% |
| !! | TCAAAATTGTTTAAAGATAA+AGG | + | chr1_3:56553524-56553543 | Msa0127300:intron | 15.0% |
| !!! | ATTTTTAAAATGTAAACCAA+CGG | - | chr1_3:56553835-56553854 | None:intergenic | 15.0% |
| !! | AAACACAAAAATTGAGAAAA+TGG | + | chr1_3:56548136-56548155 | Msa0127300:exon | 20.0% |
| !!! | ATTCTTTGTTAGTTTATTGA+AGG | - | chr1_3:56548501-56548520 | None:intergenic | 20.0% |
| !!! | AAAAAATAATTTGAGATGAG+TGG | - | chr1_3:56548651-56548670 | None:intergenic | 20.0% |
| !!! | CAAGTTTTTAAATGATTTAG+CGG | + | chr1_3:56548948-56548967 | Msa0127300:intron | 20.0% |
| !!! | TATAGCAATGTTTTAAAATC+CGG | + | chr1_3:56549083-56549102 | Msa0127300:intron | 20.0% |
| !!! | TGACTTTTTTTATTAAGACT+GGG | - | chr1_3:56549194-56549213 | None:intergenic | 20.0% |
| !!! | ATGACTTTTTTTATTAAGAC+TGG | - | chr1_3:56549195-56549214 | None:intergenic | 20.0% |
| !! | AAAAAAAATTATTCAATGCG+AGG | - | chr1_3:56549883-56549902 | None:intergenic | 20.0% |
| !!! | AACAGAGATTCTTTTATTTT+GGG | + | chr1_3:56550557-56550576 | Msa0127300:intron | 20.0% |
| !!! | TTTATTTTGGGTTTTCTTTA+TGG | + | chr1_3:56550569-56550588 | Msa0127300:intron | 20.0% |
| !!! | GTAATTATCCATTTTTTTCT+AGG | + | chr1_3:56551826-56551845 | Msa0127300:intron | 20.0% |
| !!! | AATAATTTCGCATTTTCATT+TGG | + | chr1_3:56551877-56551896 | Msa0127300:intron | 20.0% |
| !! | AAAAAAAAGATTGAGTAGAA+AGG | - | chr1_3:56551913-56551932 | None:intergenic | 20.0% |
| !!! | TTTCTACTCAATCTTTTTTT+TGG | + | chr1_3:56551912-56551931 | Msa0127300:intron | 20.0% |
| !!! | ATTTCTAGTCTAAACTTTTT+AGG | + | chr1_3:56552098-56552117 | Msa0127300:intron | 20.0% |
| !! | TAAAAAGAATTCATAAAGAG+TGG | + | chr1_3:56552520-56552539 | Msa0127300:intron | 20.0% |
| !!! | ATAGTTTTTTTCTTAGCTAA+GGG | - | chr1_3:56552653-56552672 | None:intergenic | 20.0% |
| !!! | TATAGTTTTTTTCTTAGCTA+AGG | - | chr1_3:56552654-56552673 | None:intergenic | 20.0% |
| !!! | TTTAATTTTTTTTTGCCTTG+GGG | + | chr1_3:56552784-56552803 | Msa0127300:intron | 20.0% |
| !! | ATCTAATAATATTGAGAGTA+AGG | + | chr1_3:56552985-56553004 | Msa0127300:intron | 20.0% |
| !!! | TATTTTAGTGAAAATGGATT+AGG | - | chr1_3:56553228-56553247 | None:intergenic | 20.0% |
| !!! | CTTAACTATTTTAGTGAAAA+TGG | - | chr1_3:56553234-56553253 | None:intergenic | 20.0% |
| !!! | ACAAAAAGAAATGTTTTGTA+AGG | + | chr1_3:56553495-56553514 | Msa0127300:intron | 20.0% |
| !!! | ATGACTTAAATACTTTTAGA+TGG | - | chr1_3:56554564-56554583 | None:intergenic | 20.0% |
| !! | TTGAATTCTTACCATATTAT+TGG | + | chr1_3:56554774-56554793 | Msa0127300:intron | 20.0% |
| !!! | GAGTTTTATTTGCTTATTTT+CGG | - | chr1_3:56554834-56554853 | None:intergenic | 20.0% |
| !! | ATTTTTGTGTTTCATTGTAG+AGG | - | chr1_3:56548128-56548147 | None:intergenic | 25.0% |
| !!! | TTAAGTTATTTTCTTGGTTG+CGG | + | chr1_3:56548679-56548698 | Msa0127300:intron | 25.0% |
| ! | AATATCACTCTTCTCAATTT+AGG | + | chr1_3:56548832-56548851 | Msa0127300:intron | 25.0% |
| ! | TTCATTACAACATTTGTCTA+GGG | - | chr1_3:56549935-56549954 | None:intergenic | 25.0% |
| ! | ATTCATTACAACATTTGTCT+AGG | - | chr1_3:56549936-56549955 | None:intergenic | 25.0% |
| ! | CAAAATAAAAGAATCTCTGT+TGG | - | chr1_3:56550558-56550577 | None:intergenic | 25.0% |
| !!! | CAACAGAGATTCTTTTATTT+TGG | + | chr1_3:56550556-56550575 | Msa0127300:intron | 25.0% |
| ! | TTCAATCAAATTGATACCAA+TGG | + | chr1_3:56550976-56550995 | Msa0127300:CDS | 25.0% |
| !!! | AACTATAGCTTTGTTAATTG+CGG | + | chr1_3:56551030-56551049 | Msa0127300:intron | 25.0% |
| ! | CCATAAATAAAACTAATGAG+CGG | + | chr1_3:56551140-56551159 | Msa0127300:intron | 25.0% |
| !!! | AACTTTGAAATTATGTTCCT+CGG | - | chr1_3:56551519-56551538 | None:intergenic | 25.0% |
| !!! | AACTTTGAAATTATGTTCCT+CGG | - | chr1_3:56551519-56551538 | None:intergenic | 25.0% |
| ! | TTCTAATGTGAAACTCTTAA+CGG | + | chr1_3:56551732-56551751 | Msa0127300:intron | 25.0% |
| ! | TATTCTCTTTAACCAATTCT+TGG | + | chr1_3:56552448-56552467 | Msa0127300:intron | 25.0% |
| !!! | TTAATTTTTTTTTGCCTTGG+GGG | + | chr1_3:56552785-56552804 | Msa0127300:intron | 25.0% |
| !!! | TGTAGTTTTTTTTCTTAGCT+AGG | + | chr1_3:56552846-56552865 | Msa0127300:intron | 25.0% |
| ! | ATATTATTAGATGTTGTGTG+TGG | - | chr1_3:56552977-56552996 | None:intergenic | 25.0% |
| ! | GCAAAAAAAAAAGACAAGAA+AGG | - | chr1_3:56553621-56553640 | None:intergenic | 25.0% |
| !! | GTTATAAGCAATGATTTTAC+TGG | + | chr1_3:56554129-56554148 | Msa0127300:intron | 25.0% |
| ! | AGGGTTGTATAAATTAAATG+TGG | - | chr1_3:56554338-56554357 | None:intergenic | 25.0% |
| ! | AAAATAAAGTTTACACGAGT+TGG | + | chr1_3:56554627-56554646 | Msa0127300:intron | 25.0% |
| ! | AAAGCTAATGCTTTATACTT+AGG | - | chr1_3:56554943-56554962 | None:intergenic | 25.0% |
| TGTGTGCAAATATATAGACT+TGG | - | chr1_3:56548103-56548122 | None:intergenic | 30.0% | |
| ATAACCCTCAGAATATTAAC+TGG | + | chr1_3:56548264-56548283 | Msa0127300:CDS | 30.0% | |
| TAACCCTCAGAATATTAACT+GGG | + | chr1_3:56548265-56548284 | Msa0127300:CDS | 30.0% | |
| AATCCCAGTTAATATTCTGA+GGG | - | chr1_3:56548271-56548290 | None:intergenic | 30.0% | |
| TAATCCCAGTTAATATTCTG+AGG | - | chr1_3:56548272-56548291 | None:intergenic | 30.0% | |
| !! | TTTCTCTAAAATGAGAGAAG+TGG | - | chr1_3:56548434-56548453 | None:intergenic | 30.0% |
| TATTGTTAACACTTACCAGT+TGG | - | chr1_3:56549686-56549705 | None:intergenic | 30.0% | |
| AAAATTATTCAATGCGAGGA+CGG | - | chr1_3:56549879-56549898 | None:intergenic | 30.0% | |
| TGTTAAATTGAGCATATTGC+TGG | - | chr1_3:56549962-56549981 | None:intergenic | 30.0% | |
| ! | GTAATTTTCTGCATTCTAGA+CGG | + | chr1_3:56550080-56550099 | Msa0127300:intron | 30.0% |
| ! | TAATTTTCTGCATTCTAGAC+GGG | + | chr1_3:56550081-56550100 | Msa0127300:intron | 30.0% |
| CGATTTCAAAACATGGATAT+GGG | - | chr1_3:56550152-56550171 | None:intergenic | 30.0% | |
| !!! | CCATATCCATGTTTTGAAAT+CGG | + | chr1_3:56550150-56550169 | Msa0127300:intron | 30.0% |
| !!! | CATATCCATGTTTTGAAATC+GGG | + | chr1_3:56550151-56550170 | Msa0127300:intron | 30.0% |
| !!! | ATATCCATGTTTTGAAATCG+GGG | + | chr1_3:56550152-56550171 | Msa0127300:intron | 30.0% |
| !!! | AGGTTTTTTCCATTTTGACT+GGG | - | chr1_3:56550180-56550199 | None:intergenic | 30.0% |
| ATGGAAAAAACCTGTCAAAT+TGG | + | chr1_3:56550187-56550206 | Msa0127300:intron | 30.0% | |
| TGGAAAAAACCTGTCAAATT+GGG | + | chr1_3:56550188-56550207 | Msa0127300:intron | 30.0% | |
| ! | TAATTATTTAGAATCCGGTC+CGG | + | chr1_3:56550315-56550334 | Msa0127300:intron | 30.0% |
| !!! | TAAAGCAGTGTTTTAAAACC+CGG | - | chr1_3:56550497-56550516 | None:intergenic | 30.0% |
| !!! | ACATGTGTTTTTTTGAGTAC+AGG | + | chr1_3:56550734-56550753 | Msa0127300:intron | 30.0% |
| CAAAGCTATAGTTAACTGTA+AGG | - | chr1_3:56551023-56551042 | None:intergenic | 30.0% | |
| !!! | CCGCTCATTAGTTTTATTTA+TGG | - | chr1_3:56551143-56551162 | None:intergenic | 30.0% |
| AATTAATAAGTTCAACACCG+AGG | + | chr1_3:56551550-56551569 | Msa0127300:intron | 30.0% | |
| CAGCTGAAATGATGATAATA+AGG | + | chr1_3:56551759-56551778 | Msa0127300:intron | 30.0% | |
| AATAAGGAAGATTGAGAATG+TGG | + | chr1_3:56551775-56551794 | Msa0127300:intron | 30.0% | |
| ! | GTGGTTTTCCTAGAAAAAAA+TGG | - | chr1_3:56551837-56551856 | None:intergenic | 30.0% |
| TTTACGTGTATGGTTATGTA+AGG | - | chr1_3:56551859-56551878 | None:intergenic | 30.0% | |
| TGCGAAATTATTTACGTGTA+TGG | - | chr1_3:56551869-56551888 | None:intergenic | 30.0% | |
| ! | TTAATTTGAGAGCAGTACTA+AGG | - | chr1_3:56551999-56552018 | None:intergenic | 30.0% |
| GGTCTCAAAATCTGATATAT+CGG | - | chr1_3:56552130-56552149 | None:intergenic | 30.0% | |
| AGACTAATTCGATTAAGACA+TGG | - | chr1_3:56552175-56552194 | None:intergenic | 30.0% | |
| ! | TGTCTTAATCGAATTAGTCT+TGG | + | chr1_3:56552175-56552194 | Msa0127300:intron | 30.0% |
| ! | GATTTTCTCAATCCAAGAAT+TGG | - | chr1_3:56552463-56552482 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAAGTTGCGATTT+TGG | - | chr1_3:56552874-56552893 | None:intergenic | 30.0% |
| ! | ATCGCAACTTTGAAAAAGTA+AGG | + | chr1_3:56552876-56552895 | Msa0127300:intron | 30.0% |
| ! | TCGCAACTTTGAAAAAGTAA+GGG | + | chr1_3:56552877-56552896 | Msa0127300:intron | 30.0% |
| !! | TTTGTGGGTCGATTTTTATA+AGG | + | chr1_3:56553085-56553104 | Msa0127300:intron | 30.0% |
| TTACTAGCTCACAACTTAAT+TGG | - | chr1_3:56553377-56553396 | None:intergenic | 30.0% | |
| AGAAGTAAAAGGATAAGGAA+AGG | - | chr1_3:56553418-56553437 | None:intergenic | 30.0% | |
| AGTTGAGAAGTAAAAGGATA+AGG | - | chr1_3:56553423-56553442 | None:intergenic | 30.0% | |
| ATGATATATGTTGTCCGAAT+CGG | - | chr1_3:56553712-56553731 | None:intergenic | 30.0% | |
| ! | CTAAATTTTACCTTGTGTAG+AGG | - | chr1_3:56553742-56553761 | None:intergenic | 30.0% |
| ATTGCATAAATATCTACCGT+TGG | + | chr1_3:56553816-56553835 | Msa0127300:intron | 30.0% | |
| CAACCTATGAATTAATAGTG+TGG | + | chr1_3:56554021-56554040 | Msa0127300:intron | 30.0% | |
| GTAGAAACGCTTGAATTTAT+AGG | - | chr1_3:56554182-56554201 | None:intergenic | 30.0% | |
| !! | ATTGTTCTGTGTTCTTGTTT+TGG | + | chr1_3:56554285-56554304 | Msa0127300:CDS | 30.0% |
| !! | TTTACACGAGTTGGATTTTA+GGG | + | chr1_3:56554636-56554655 | Msa0127300:intron | 30.0% |
| ATTTGAACTTTAGTCCTTTG+TGG | + | chr1_3:56554743-56554762 | Msa0127300:intron | 30.0% | |
| TTTGAACTTTAGTCCTTTGT+GGG | + | chr1_3:56554744-56554763 | Msa0127300:intron | 30.0% | |
| TACACACTCATCCAATAATA+TGG | - | chr1_3:56554788-56554807 | None:intergenic | 30.0% | |
| !! | CTTTCATGTTTGTTGATGAT+AGG | + | chr1_3:56554959-56554978 | Msa0127300:intron | 30.0% |
| ATTATTGATCAATGCCACAA+TGG | + | chr1_3:56555020-56555039 | Msa0127300:CDS | 30.0% | |
| TTATTGATCAATGCCACAAT+GGG | + | chr1_3:56555021-56555040 | Msa0127300:CDS | 30.0% | |
| ! | AACTATGCTTTTGTAGATTG+TGG | + | chr1_3:56555122-56555141 | Msa0127300:CDS | 30.0% |
| ACAGAGAAAGTTAAGCTTGT+TGG | + | chr1_3:56548166-56548185 | Msa0127300:CDS | 35.0% | |
| TTGGTATTGTGTTTCCTTGT+TGG | + | chr1_3:56548185-56548204 | Msa0127300:CDS | 35.0% | |
| TCAGAGTGCAAACAATGTTA+GGG | + | chr1_3:56548226-56548245 | Msa0127300:CDS | 35.0% | |
| !! | CTTTGTTGCACTAACTTGTT+GGG | + | chr1_3:56548717-56548736 | Msa0127300:intron | 35.0% |
| !!! | CAATGTTTTAAAATCCGGAC+CGG | + | chr1_3:56549088-56549107 | Msa0127300:intron | 35.0% |
| AACAATATTGTGCTGCATGT+AGG | + | chr1_3:56549699-56549718 | Msa0127300:intron | 35.0% | |
| AGTATATGAGAATCGGGTAT+GGG | - | chr1_3:56549769-56549788 | None:intergenic | 35.0% | |
| AAGTATATGAGAATCGGGTA+TGG | - | chr1_3:56549770-56549789 | None:intergenic | 35.0% | |
| ACGGGTAAGTATATGAGAAT+CGG | - | chr1_3:56549776-56549795 | None:intergenic | 35.0% | |
| TTCAAATTCTCATCCACGTT+GGG | - | chr1_3:56549812-56549831 | None:intergenic | 35.0% | |
| AAATTATTCAATGCGAGGAC+GGG | - | chr1_3:56549878-56549897 | None:intergenic | 35.0% | |
| AAAGGAGCGACTAAATCAAT+CGG | - | chr1_3:56549994-56550013 | None:intergenic | 35.0% | |
| TCAAAACATGGATATGGGAT+GGG | - | chr1_3:56550147-56550166 | None:intergenic | 35.0% | |
| TTCAAAACATGGATATGGGA+TGG | - | chr1_3:56550148-56550167 | None:intergenic | 35.0% | |
| CCGATTTCAAAACATGGATA+TGG | - | chr1_3:56550153-56550172 | None:intergenic | 35.0% | |
| !!! | CAGGTTTTTTCCATTTTGAC+TGG | - | chr1_3:56550181-56550200 | None:intergenic | 35.0% |
| AAAACCTGTCAAATTGGGTT+TGG | + | chr1_3:56550193-56550212 | Msa0127300:intron | 35.0% | |
| AATTATCAAACTGTGGCTAG+TGG | - | chr1_3:56550285-56550304 | None:intergenic | 35.0% | |
| TGTCGTAGAAGTTCATGTTA+AGG | + | chr1_3:56550606-56550625 | Msa0127300:intron | 35.0% | |
| TGCCAAATAAGAGAGAATTG+TGG | + | chr1_3:56550804-56550823 | Msa0127300:intron | 35.0% | |
| GCCAAATAAGAGAGAATTGT+GGG | + | chr1_3:56550805-56550824 | Msa0127300:intron | 35.0% | |
| ACCCACAATTCTCTCTTATT+TGG | - | chr1_3:56550809-56550828 | None:intergenic | 35.0% | |
| TCAAATTGATACCAATGGAC+AGG | + | chr1_3:56550981-56551000 | Msa0127300:CDS | 35.0% | |
| CAAATTGATACCAATGGACA+GGG | + | chr1_3:56550982-56551001 | Msa0127300:CDS | 35.0% | |
| !! | ACTGTACATGACTTGCTATT+TGG | + | chr1_3:56551230-56551249 | Msa0127300:intron | 35.0% |
| ACATAACAAGATTGCACTTG+TGG | + | chr1_3:56551284-56551303 | Msa0127300:intron | 35.0% | |
| ACGTGAGTACATCAATATGT+TGG | + | chr1_3:56551971-56551990 | Msa0127300:intron | 35.0% | |
| CGTGAGTACATCAATATGTT+GGG | + | chr1_3:56551972-56551991 | Msa0127300:intron | 35.0% | |
| GTGAGTACATCAATATGTTG+GGG | + | chr1_3:56551973-56551992 | Msa0127300:intron | 35.0% | |
| TGCCACAATTGCAAAACTTA+GGG | - | chr1_3:56552685-56552704 | None:intergenic | 35.0% | |
| ! | TTTTGCAATTGTGGCAGTTT+TGG | + | chr1_3:56552689-56552708 | Msa0127300:intron | 35.0% |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | - | chr1_3:56552811-56552830 | None:intergenic | 35.0% |
| TGCTACAGTTGCAAAACTTA+GGG | + | chr1_3:56552815-56552834 | Msa0127300:intron | 35.0% | |
| ! | CGCAACTTTGAAAAAGTAAG+GGG | + | chr1_3:56552878-56552897 | Msa0127300:intron | 35.0% |
| ! | GCAACTTTGAAAAAGTAAGG+GGG | + | chr1_3:56552879-56552898 | Msa0127300:intron | 35.0% |
| !! | AGAGTGACATTGTTACTTTG+TGG | + | chr1_3:56553069-56553088 | Msa0127300:intron | 35.0% |
| !! | GAGTGACATTGTTACTTTGT+GGG | + | chr1_3:56553070-56553089 | Msa0127300:intron | 35.0% |
| TCAAAGCAAAAATCCTTTGC+AGG | + | chr1_3:56553309-56553328 | Msa0127300:intron | 35.0% | |
| GATTCACTCGCTAAAAAGAT+TGG | - | chr1_3:56553343-56553362 | None:intergenic | 35.0% | |
| ACTAGCAGTTGAGAAGTAAA+AGG | - | chr1_3:56553429-56553448 | None:intergenic | 35.0% | |
| GATTCGGACAACATATATCA+TGG | + | chr1_3:56553711-56553730 | Msa0127300:intron | 35.0% | |
| !! | TTTTTAACGAGGAGCATAAC+TGG | + | chr1_3:56553867-56553886 | Msa0127300:intron | 35.0% |
| !! | TTTTAACGAGGAGCATAACT+GGG | + | chr1_3:56553868-56553887 | Msa0127300:intron | 35.0% |
| GTGCCACACTATTAATTCAT+AGG | - | chr1_3:56554027-56554046 | None:intergenic | 35.0% | |
| TTACTGGCATCAATTAAAGC+CGG | + | chr1_3:56554145-56554164 | Msa0127300:intron | 35.0% | |
| GCTTGAATTTATAGGCTTCA+TGG | - | chr1_3:56554174-56554193 | None:intergenic | 35.0% | |
| GAACAATGACAACATGCATA+GGG | - | chr1_3:56554272-56554291 | None:intergenic | 35.0% | |
| AGAACAATGACAACATGCAT+AGG | - | chr1_3:56554273-56554292 | None:intergenic | 35.0% | |
| !! | GTTTACACGAGTTGGATTTT+AGG | + | chr1_3:56554635-56554654 | Msa0127300:intron | 35.0% |
| ATTCAACTCAAATCCCACAA+AGG | - | chr1_3:56554760-56554779 | None:intergenic | 35.0% | |
| TAGGTGACAAACACTAAAAC+TGG | + | chr1_3:56554978-56554997 | Msa0127300:intron | 35.0% | |
| TATTGATCAATGCCACAATG+GGG | + | chr1_3:56555022-56555041 | Msa0127300:CDS | 35.0% | |
| TCACTAACATCGTTCCAACA+AGG | - | chr1_3:56548202-56548221 | None:intergenic | 40.0% | |
| GTCAGAGTGCAAACAATGTT+AGG | + | chr1_3:56548225-56548244 | Msa0127300:CDS | 40.0% | |
| ! | TATTTGCTACGCCATGACAA+GGG | - | chr1_3:56548338-56548357 | None:intergenic | 40.0% |
| ! | ATATTTGCTACGCCATGACA+AGG | - | chr1_3:56548339-56548358 | None:intergenic | 40.0% |
| TTGTCATGGCGTAGCAAATA+TGG | + | chr1_3:56548338-56548357 | Msa0127300:CDS | 40.0% | |
| CCAACAAGTTAGTGCAACAA+AGG | - | chr1_3:56548719-56548738 | None:intergenic | 40.0% | |
| ! | CCTTTGTTGCACTAACTTGT+TGG | + | chr1_3:56548716-56548735 | Msa0127300:intron | 40.0% |
| ! | CTTGTTGGGTTGTCTTTAGT+AGG | + | chr1_3:56548731-56548750 | Msa0127300:intron | 40.0% |
| AACAAGTTCACATAGCCAAC+TGG | + | chr1_3:56549668-56549687 | Msa0127300:intron | 40.0% | |
| GTATATGAGAATCGGGTATG+GGG | - | chr1_3:56549768-56549787 | None:intergenic | 40.0% | |
| CGGGTAAGTATATGAGAATC+GGG | - | chr1_3:56549775-56549794 | None:intergenic | 40.0% | |
| GTTCAAATTCTCATCCACGT+TGG | - | chr1_3:56549813-56549832 | None:intergenic | 40.0% | |
| AATTATTCAATGCGAGGACG+GGG | - | chr1_3:56549877-56549896 | None:intergenic | 40.0% | |
| ! | CTGTCAAATTGGGTTTGGTT+CGG | + | chr1_3:56550198-56550217 | Msa0127300:intron | 40.0% |
| ! | TGTCAAATTGGGTTTGGTTC+GGG | + | chr1_3:56550199-56550218 | Msa0127300:intron | 40.0% |
| !! | CGGTGCTACGTATACTTAAT+TGG | + | chr1_3:56551160-56551179 | Msa0127300:intron | 40.0% |
| CTCTTTCACACATGACATTC+TGG | - | chr1_3:56551310-56551329 | None:intergenic | 40.0% | |
| GCAATCTCACATGATGACAA+GGG | + | chr1_3:56551399-56551418 | Msa0127300:intron | 40.0% | |
| ACGTGTATGGTTATGTAAGG+TGG | - | chr1_3:56551856-56551875 | None:intergenic | 40.0% | |
| ! | ATGGCTTGACGTTTTACAAG+CGG | - | chr1_3:56552156-56552175 | None:intergenic | 40.0% |
| TAGCGACACATGACAAAACA+TGG | - | chr1_3:56552430-56552449 | None:intergenic | 40.0% | |
| ! | GCAACTTTGGGAAAGTAAGA+GGG | - | chr1_3:56552622-56552641 | None:intergenic | 40.0% |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | + | chr1_3:56552627-56552646 | Msa0127300:intron | 40.0% |
| CCACAATTGCAAAACTTAGG+GGG | - | chr1_3:56552683-56552702 | None:intergenic | 40.0% | |
| GCCACAATTGCAAAACTTAG+GGG | - | chr1_3:56552684-56552703 | None:intergenic | 40.0% | |
| CTGCCACAATTGCAAAACTT+AGG | - | chr1_3:56552686-56552705 | None:intergenic | 40.0% | |
| CTGCTACAGTTGCAAAACTT+AGG | + | chr1_3:56552814-56552833 | Msa0127300:intron | 40.0% | |
| GCTACAGTTGCAAAACTTAG+GGG | + | chr1_3:56552816-56552835 | Msa0127300:intron | 40.0% | |
| CTACAGTTGCAAAACTTAGG+GGG | + | chr1_3:56552817-56552836 | Msa0127300:intron | 40.0% | |
| TATTCTCTCTCGCGTGAAAA+TGG | - | chr1_3:56553275-56553294 | None:intergenic | 40.0% | |
| AAGCAAAAATCCTTTGCAGG+TGG | + | chr1_3:56553312-56553331 | Msa0127300:intron | 40.0% | |
| AAAATCCTTTGCAGGTGGAA+TGG | + | chr1_3:56553317-56553336 | Msa0127300:intron | 40.0% | |
| CGTGAAAAGTAGTGGCAAAT+TGG | - | chr1_3:56553684-56553703 | None:intergenic | 40.0% | |
| !! | CTTTTCACGTTTTGCCGATT+CGG | + | chr1_3:56553695-56553714 | Msa0127300:intron | 40.0% |
| AACGACGAAGTAGAAACAGA+AGG | + | chr1_3:56553763-56553782 | Msa0127300:intron | 40.0% | |
| AAACTTCACAATCCCACATG+AGG | - | chr1_3:56553950-56553969 | None:intergenic | 40.0% | |
| TTTATAGGCTTCATGGTTGC+CGG | - | chr1_3:56554167-56554186 | None:intergenic | 40.0% | |
| ! | ATTAAATGTGGACTGCACAG+TGG | - | chr1_3:56554326-56554345 | None:intergenic | 40.0% |
| ! | TATTTGCTACGCCATGACAA+AGG | - | chr1_3:56548338-56548357 | None:intergenic | 40.0% |
| TTGTCATGGCGTAGCAAATA+TGG | + | chr1_3:56548338-56548357 | Msa0127300:CDS | 40.0% | |
| ATTGATCAATGCCACAATGG+GGG | + | chr1_3:56555023-56555042 | Msa0127300:CDS | 40.0% | |
| GTTGGAACGATGTTAGTGAG+TGG | + | chr1_3:56548203-56548222 | Msa0127300:CDS | 45.0% | |
| CAGTGTATACTGTGCTACCT+GGG | + | chr1_3:56548301-56548320 | Msa0127300:CDS | 45.0% | |
| CATGGCGTAGCAAATATGGT+TGG | + | chr1_3:56548342-56548361 | Msa0127300:CDS | 45.0% | |
| ! | TATGGTTGGACTGCCTTTTG+TGG | + | chr1_3:56548356-56548375 | Msa0127300:CDS | 45.0% |
| GCTTTAACCGAATCGACTAC+CGG | - | chr1_3:56549110-56549129 | None:intergenic | 45.0% | |
| !! | AGTCGATTCGGTTAAAGCAC+TGG | + | chr1_3:56549112-56549131 | Msa0127300:intron | 45.0% |
| !! | GTCGATTCGGTTAAAGCACT+GGG | + | chr1_3:56549113-56549132 | Msa0127300:intron | 45.0% |
| AGACTGGGTCAATAGTCATG+CGG | - | chr1_3:56549179-56549198 | None:intergenic | 45.0% | |
| TATTGTGCTGCATGTAGGCA+TGG | + | chr1_3:56549704-56549723 | Msa0127300:intron | 45.0% | |
| CTGCATGTAGGCATGGTAAT+GGG | + | chr1_3:56549711-56549730 | Msa0127300:intron | 45.0% | |
| ! | TGCATGTAGGCATGGTAATG+GGG | + | chr1_3:56549712-56549731 | Msa0127300:intron | 45.0% |
| ! | TTCTGCATTCTAGACGGGTT+TGG | + | chr1_3:56550086-56550105 | Msa0127300:intron | 45.0% |
| ! | TCTGCATTCTAGACGGGTTT+GGG | + | chr1_3:56550087-56550106 | Msa0127300:intron | 45.0% |
| ! | ATTCTAGACGGGTTTGGGTA+TGG | + | chr1_3:56550092-56550111 | Msa0127300:intron | 45.0% |
| ! | TTCTAGACGGGTTTGGGTAT+GGG | + | chr1_3:56550093-56550112 | Msa0127300:intron | 45.0% |
| ATGGATATGGGATGGGTAAC+GGG | - | chr1_3:56550140-56550159 | None:intergenic | 45.0% | |
| CATGGATATGGGATGGGTAA+CGG | - | chr1_3:56550141-56550160 | None:intergenic | 45.0% | |
| GGTTCCCCGATTTCAAAACA+TGG | - | chr1_3:56550159-56550178 | None:intergenic | 45.0% | |
| CGAACCAAACCCAATTTGAC+AGG | - | chr1_3:56550200-56550219 | None:intergenic | 45.0% | |
| GACAACAAAACCCATACCTG+TGG | - | chr1_3:56550232-56550251 | None:intergenic | 45.0% | |
| CAGGTGACAAATACTGCAAC+TGG | + | chr1_3:56550886-56550905 | Msa0127300:intron | 45.0% | |
| AAATACTGCAACTGGAGCTC+AGG | + | chr1_3:56550894-56550913 | Msa0127300:CDS | 45.0% | |
| ! | TCAGGTAACGGTGAGAATAG+TGG | + | chr1_3:56550912-56550931 | Msa0127300:CDS | 45.0% |
| ATCTAAGTCCAGTCCACCAT+TGG | - | chr1_3:56550947-56550966 | None:intergenic | 45.0% | |
| CGCAATCTCACATGATGACA+AGG | + | chr1_3:56551398-56551417 | Msa0127300:intron | 45.0% | |
| GTTGAAGTGATAGACGGCAT+AGG | - | chr1_3:56551495-56551514 | None:intergenic | 45.0% | |
| !! | CTCGGTGTTGAAGTGATAGA+CGG | - | chr1_3:56551501-56551520 | None:intergenic | 45.0% |
| ! | TTGACGTTTTACAAGCGGTG+TGG | - | chr1_3:56552151-56552170 | None:intergenic | 45.0% |
| ! | CGCAACTTTGGGAAAGTAAG+AGG | - | chr1_3:56552623-56552642 | None:intergenic | 45.0% |
| AGGGCCAAAATCGCAACTTT+GGG | - | chr1_3:56552634-56552653 | None:intergenic | 45.0% | |
| AAGGGCCAAAATCGCAACTT+TGG | - | chr1_3:56552635-56552654 | None:intergenic | 45.0% | |
| CAATTGCAAAACTTAGGGGG+CGG | - | chr1_3:56552680-56552699 | None:intergenic | 45.0% | |
| ! | CCCCCTAAGTTTTGCAATTG+TGG | + | chr1_3:56552680-56552699 | Msa0127300:intron | 45.0% |
| AGCGTAGACCGAGTCAAAAT+GGG | - | chr1_3:56552724-56552743 | None:intergenic | 45.0% | |
| GACATGTGACACCTCACTTA+GGG | - | chr1_3:56552756-56552775 | None:intergenic | 45.0% | |
| TGACATGTGACACCTCACTT+AGG | - | chr1_3:56552757-56552776 | None:intergenic | 45.0% | |
| ! | CTCTCGCGTGAAAATGGATT+AGG | - | chr1_3:56553269-56553288 | None:intergenic | 45.0% |
| ! | GTAGTGGCAAATTGGCTTAC+TGG | - | chr1_3:56553676-56553695 | None:intergenic | 45.0% |
| CGGCAAAACGTGAAAAGTAG+TGG | - | chr1_3:56553692-56553711 | None:intergenic | 45.0% | |
| TGTGGCACAAAGATGCGTTA+AGG | + | chr1_3:56554039-56554058 | Msa0127300:intron | 45.0% | |
| ACAACCCTGAGCAACATAAC+TGG | + | chr1_3:56554350-56554369 | Msa0127300:CDS | 45.0% | |
| CAACCCTGAGCAACATAACT+GGG | + | chr1_3:56554351-56554370 | Msa0127300:CDS | 45.0% | |
| AGTCCCAGTTATGTTGCTCA+GGG | - | chr1_3:56554357-56554376 | None:intergenic | 45.0% | |
| AAGTCCCAGTTATGTTGCTC+AGG | - | chr1_3:56554358-56554377 | None:intergenic | 45.0% | |
| ! | TGAGTGCATTTTGCGCAACA+TGG | + | chr1_3:56554386-56554405 | Msa0127300:CDS | 45.0% |
| ! | GAGTGCATTTTGCGCAACAT+GGG | + | chr1_3:56554387-56554406 | Msa0127300:CDS | 45.0% |
| !!! | AGTTGGATTTTAGGGCGAGT+CGG | + | chr1_3:56554644-56554663 | Msa0127300:intron | 45.0% |
| TTCTATCTGAGTCGAGCCTT+TGG | - | chr1_3:56555073-56555092 | None:intergenic | 45.0% | |
| AGATAGAAGTGGGAATGCTC+AGG | + | chr1_3:56555085-56555104 | Msa0127300:CDS | 45.0% | |
| GATAGAAGTGGGAATGCTCA+GGG | + | chr1_3:56555086-56555105 | Msa0127300:CDS | 45.0% | |
| !!! | TTTTGAATAAAATTAAATTT+TGG | + | chr1_3:56550532-56550551 | Msa0127300:intron | 5.0% |
| !!! | CTATTTTAAAATTTATATAT+TGG | + | chr1_3:56554588-56554607 | Msa0127300:intron | 5.0% |
| CCAGGTAGCACAGTATACAC+TGG | - | chr1_3:56548303-56548322 | None:intergenic | 50.0% | |
| CCAGTGTATACTGTGCTACC+TGG | + | chr1_3:56548300-56548319 | Msa0127300:CDS | 50.0% | |
| ATGCAAACCAGCCCTTGTCA+TGG | + | chr1_3:56548324-56548343 | Msa0127300:CDS | 50.0% | |
| CCAACAGGCAGAGATTCTTG+CGG | + | chr1_3:56548389-56548408 | Msa0127300:CDS | 50.0% | |
| GCTGCATGTAGGCATGGTAA+TGG | + | chr1_3:56549710-56549729 | Msa0127300:intron | 50.0% | |
| !! | ATGTAGGCATGGTAATGGGG+CGG | + | chr1_3:56549715-56549734 | Msa0127300:intron | 50.0% |
| TGAGAATCGGGTATGGGGAT+GGG | - | chr1_3:56549763-56549782 | None:intergenic | 50.0% | |
| ATGAGAATCGGGTATGGGGA+TGG | - | chr1_3:56549764-56549783 | None:intergenic | 50.0% | |
| TTGGGTATGAGCAGGGTAAC+GGG | - | chr1_3:56549794-56549813 | None:intergenic | 50.0% | |
| GTTGGGTATGAGCAGGGTAA+CGG | - | chr1_3:56549795-56549814 | None:intergenic | 50.0% | |
| ATCCACGTTGGGTATGAGCA+GGG | - | chr1_3:56549801-56549820 | None:intergenic | 50.0% | |
| !! | GGGATGGGTAACGGGTATAT+AGG | - | chr1_3:56550132-56550151 | None:intergenic | 50.0% |
| ATCGGGGAACCCAGTCAAAA+TGG | + | chr1_3:56550168-56550187 | Msa0127300:intron | 50.0% | |
| !! | CAAATTGGGTTTGGTTCGGG+CGG | + | chr1_3:56550202-56550221 | Msa0127300:intron | 50.0% |
| !! | AAATTGGGTTTGGTTCGGGC+GGG | + | chr1_3:56550203-56550222 | Msa0127300:intron | 50.0% |
| TGGCTAGTGGTAGTTGAACC+GGG | - | chr1_3:56550272-56550291 | None:intergenic | 50.0% | |
| GTGGCTAGTGGTAGTTGAAC+CGG | - | chr1_3:56550273-56550292 | None:intergenic | 50.0% | |
| TTAGAATCCGGTCCGGTTCA+CGG | + | chr1_3:56550322-56550341 | Msa0127300:intron | 50.0% | |
| TCCTGGGTTGCTTGGATATC+CGG | + | chr1_3:56550402-56550421 | Msa0127300:intron | 50.0% | |
| ! | GGTTGGTCAGCTAATCAGAC+CGG | - | chr1_3:56550424-56550443 | None:intergenic | 50.0% |
| !!! | TTTTAAAACCCGGACCGACC+CGG | - | chr1_3:56550487-56550506 | None:intergenic | 50.0% |
| ! | GTGGTGATGACTGATGATGC+AGG | + | chr1_3:56550867-56550886 | Msa0127300:intron | 50.0% |
| TGCAACTGGAGCTCAGGTAA+CGG | + | chr1_3:56550900-56550919 | Msa0127300:CDS | 50.0% | |
| !! | ATAGTGGACCAGTGCTCCAA+TGG | + | chr1_3:56550928-56550947 | Msa0127300:CDS | 50.0% |
| ATTCTGAACGCCCTGTCCAT+TGG | - | chr1_3:56550995-56551014 | None:intergenic | 50.0% | |
| ! | AATGGACAGGGCGTTCAGAA+TGG | + | chr1_3:56550994-56551013 | Msa0127300:CDS | 50.0% |
| CGTCTATCACTTCAACACCG+AGG | + | chr1_3:56551499-56551518 | Msa0127300:intron | 50.0% | |
| ACCGAGTCAAAATGGGCCTT+GGG | - | chr1_3:56552717-56552736 | None:intergenic | 50.0% | |
| CAGCGTAGACCGAGTCAAAA+TGG | - | chr1_3:56552725-56552744 | None:intergenic | 50.0% | |
| ATTGGCCATTCCACCTGCAA+AGG | - | chr1_3:56553325-56553344 | None:intergenic | 50.0% | |
| ! | CATGGCTCTACCTCTACACA+AGG | + | chr1_3:56553729-56553748 | Msa0127300:intron | 50.0% |
| TCCTTTGTCCAAGCCTCATG+TGG | + | chr1_3:56553934-56553953 | Msa0127300:intron | 50.0% | |
| CCTTTGTCCAAGCCTCATGT+GGG | + | chr1_3:56553935-56553954 | Msa0127300:intron | 50.0% | |
| TCACAATCCCACATGAGGCT+TGG | - | chr1_3:56553945-56553964 | None:intergenic | 50.0% | |
| ATGCAGACCAGCCTTTGTCA+TGG | + | chr1_3:56554410-56554429 | Msa0127300:CDS | 50.0% | |
| CATGGCGTAGCAAATATGGC+TGG | + | chr1_3:56554428-56554447 | Msa0127300:CDS | 50.0% | |
| TTCTTGTGGCCGTTGCTTGA+GGG | + | chr1_3:56554489-56554508 | Msa0127300:CDS | 50.0% | |
| CCAAGCATACCCTCAAGCAA+CGG | - | chr1_3:56554501-56554520 | None:intergenic | 50.0% | |
| CCAAGTCTAATCCCCCATTG+TGG | - | chr1_3:56555037-56555056 | None:intergenic | 50.0% | |
| CCACAATGGGGGATTAGACT+TGG | + | chr1_3:56555034-56555053 | Msa0127300:CDS | 50.0% | |
| TGGACGTTGGTGTGTTCCAA+AGG | + | chr1_3:56555054-56555073 | Msa0127300:CDS | 50.0% | |
| AGGCTCGACTCAGATAGAAG+TGG | + | chr1_3:56555074-56555093 | Msa0127300:CDS | 50.0% | |
| GGCTCGACTCAGATAGAAGT+GGG | + | chr1_3:56555075-56555094 | Msa0127300:CDS | 50.0% | |
| ! | ACTGCCTTTTGTGGACCAGC+TGG | + | chr1_3:56548365-56548384 | Msa0127300:CDS | 55.0% |
| ! | CTGCCTTTTGTGGACCAGCT+GGG | + | chr1_3:56548366-56548385 | Msa0127300:CDS | 55.0% |
| CCGCAAGAATCTCTGCCTGT+TGG | - | chr1_3:56548392-56548411 | None:intergenic | 55.0% | |
| ATCCGGACCGGTAGTCGATT+CGG | + | chr1_3:56549100-56549119 | Msa0127300:intron | 55.0% | |
| AACCGAATCGACTACCGGTC+CGG | - | chr1_3:56549105-56549124 | None:intergenic | 55.0% | |
| TGGGTCACTGAGTCAGTGGT+CGG | + | chr1_3:56549132-56549151 | Msa0127300:intron | 55.0% | |
| TGAGTCAGTGGTCGGACCAA+TGG | + | chr1_3:56549140-56549159 | Msa0127300:intron | 55.0% | |
| GAGTCAGTGGTCGGACCAAT+GGG | + | chr1_3:56549141-56549160 | Msa0127300:intron | 55.0% | |
| !! | TGTAGGCATGGTAATGGGGC+GGG | + | chr1_3:56549716-56549735 | Msa0127300:intron | 55.0% |
| TACCCTGCTCATACCCAACG+TGG | + | chr1_3:56549796-56549815 | Msa0127300:intron | 55.0% | |
| CATCCACGTTGGGTATGAGC+AGG | - | chr1_3:56549802-56549821 | None:intergenic | 55.0% | |
| TTCAATGCGAGGACGGGGAA+GGG | - | chr1_3:56549872-56549891 | None:intergenic | 55.0% | |
| ATTCAATGCGAGGACGGGGA+AGG | - | chr1_3:56549873-56549892 | None:intergenic | 55.0% | |
| ! | GACGGGTTTGGGTATGGGTT+CGG | + | chr1_3:56550098-56550117 | Msa0127300:intron | 55.0% |
| ACGGGTTTGGGTATGGGTTC+GGG | + | chr1_3:56550099-56550118 | Msa0127300:intron | 55.0% | |
| TTTGGGTATGGGTTCGGGGT+GGG | + | chr1_3:56550104-56550123 | Msa0127300:intron | 55.0% | |
| CATGCCTAGCTGCATGTACC+CGG | + | chr1_3:56550251-56550270 | Msa0127300:intron | 55.0% | |
| TGAACCGGGTACATGCAGCT+AGG | - | chr1_3:56550258-56550277 | None:intergenic | 55.0% | |
| TAGAATCCGGTCCGGTTCAC+GGG | + | chr1_3:56550323-56550342 | Msa0127300:intron | 55.0% | |
| GTTATGACCCACCCGTGAAC+CGG | - | chr1_3:56550337-56550356 | None:intergenic | 55.0% | |
| GGTTCACGGGTGGGTCATAA+CGG | + | chr1_3:56550336-56550355 | Msa0127300:intron | 55.0% | |
| TCCAAGCAACCCAGGAAACC+CGG | - | chr1_3:56550398-56550417 | None:intergenic | 55.0% | |
| ACCGGATATCCAAGCAACCC+AGG | - | chr1_3:56550406-56550425 | None:intergenic | 55.0% | |
| CGAGTCAAAATGGGCCTTGG+GGG | - | chr1_3:56552715-56552734 | None:intergenic | 55.0% | |
| CCGAGTCAAAATGGGCCTTG+GGG | - | chr1_3:56552716-56552735 | None:intergenic | 55.0% | |
| !!! | CCCCAAGGCCCATTTTGACT+CGG | + | chr1_3:56552713-56552732 | Msa0127300:intron | 55.0% |
| GACCGAGTCAAAATGGGCCT+TGG | - | chr1_3:56552718-56552737 | None:intergenic | 55.0% | |
| !! | TGTAGCAGTTTTGGCCCCCA+AGG | - | chr1_3:56552802-56552821 | None:intergenic | 55.0% |
| CCCACATGAGGCTTGGACAA+AGG | - | chr1_3:56553938-56553957 | None:intergenic | 55.0% | |
| TGCTACGCCATGACAAAGGC+TGG | - | chr1_3:56554420-56554439 | None:intergenic | 55.0% | |
| TATGGCTGGACTGCCTTCTG+TGG | + | chr1_3:56554442-56554461 | Msa0127300:CDS | 55.0% | |
| !! | CCACAAGAAGCTTGGCCTTG+AGG | - | chr1_3:56554478-56554497 | None:intergenic | 55.0% |
| CCTCAAGGCCAAGCTTCTTG+TGG | + | chr1_3:56554475-56554494 | Msa0127300:CDS | 55.0% | |
| AGCAACGGCCACAAGAAGCT+TGG | - | chr1_3:56554486-56554505 | None:intergenic | 55.0% | |
| CTTCTTGTGGCCGTTGCTTG+AGG | + | chr1_3:56554488-56554507 | Msa0127300:CDS | 55.0% | |
| ! | CCGTTGCTTGAGGGTATGCT+TGG | + | chr1_3:56554498-56554517 | Msa0127300:intron | 55.0% |
| GGGGGATTAGACTTGGACGT+TGG | + | chr1_3:56555041-56555060 | Msa0127300:CDS | 55.0% | |
| !! | CAAGGGCTGGTTTGCATCCC+AGG | - | chr1_3:56548321-56548340 | None:intergenic | 60.0% |
| TGCTACGCCATGACAAGGGC+TGG | - | chr1_3:56548334-56548353 | None:intergenic | 60.0% | |
| TGGCCCAGCTGGTCCACAAA+AGG | - | chr1_3:56548372-56548391 | None:intergenic | 60.0% | |
| GCACTGGGTCACTGAGTCAG+TGG | + | chr1_3:56549128-56549147 | Msa0127300:intron | 60.0% | |
| TGGTCGGACCAATGGGTCAC+TGG | + | chr1_3:56549148-56549167 | Msa0127300:intron | 60.0% | |
| CGGACCAATGGGTCACTGGT+TGG | + | chr1_3:56549152-56549171 | Msa0127300:intron | 60.0% | |
| CGGTCCAACCAGTGACCCAT+TGG | - | chr1_3:56549159-56549178 | None:intergenic | 60.0% | |
| !! | GTAGGCATGGTAATGGGGCG+GGG | + | chr1_3:56549717-56549736 | Msa0127300:intron | 60.0% |
| ATACCCGAACCCGTCGGGAA+CGG | - | chr1_3:56549843-56549862 | None:intergenic | 60.0% | |
| TCAATGCGAGGACGGGGAAG+GGG | - | chr1_3:56549871-56549890 | None:intergenic | 60.0% | |
| CGGGTTTGGGTATGGGTTCG+GGG | + | chr1_3:56550100-56550119 | Msa0127300:intron | 60.0% | |
| GTTTGGGTATGGGTTCGGGG+TGG | + | chr1_3:56550103-56550122 | Msa0127300:intron | 60.0% | |
| GGGCGGGTAACCACAGGTAT+GGG | + | chr1_3:56550219-56550238 | Msa0127300:intron | 60.0% | |
| !! | GGTTCGCCGATTTGTCCACC+CGG | + | chr1_3:56550357-56550376 | Msa0127300:intron | 60.0% |
| AAACCCGGTGTGACCCATGC+GGG | - | chr1_3:56550383-56550402 | None:intergenic | 60.0% | |
| GAAACCCGGTGTGACCCATG+CGG | - | chr1_3:56550384-56550403 | None:intergenic | 60.0% | |
| ATGGGTCACACCGGGTTTCC+TGG | + | chr1_3:56550385-56550404 | Msa0127300:intron | 60.0% | |
| TGGGTCACACCGGGTTTCCT+GGG | + | chr1_3:56550386-56550405 | Msa0127300:intron | 60.0% | |
| ACCGGGTTTCCTGGGTTGCT+TGG | + | chr1_3:56550394-56550413 | Msa0127300:intron | 60.0% | |
| GTGGACCAGTGCTCCAATGG+TGG | + | chr1_3:56550931-56550950 | Msa0127300:CDS | 60.0% | |
| CCAGTCCACCATTGGAGCAC+TGG | - | chr1_3:56550939-56550958 | None:intergenic | 60.0% | |
| !! | CCAGTGCTCCAATGGTGGAC+TGG | + | chr1_3:56550936-56550955 | Msa0127300:CDS | 60.0% |
| !! | TGTGGCAGTTTTGGCCCCCA+AGG | + | chr1_3:56552698-56552717 | Msa0127300:intron | 60.0% |
| !! | TGACTCGGTCTACGCTGACG+TGG | + | chr1_3:56552728-56552747 | Msa0127300:intron | 60.0% |
| CTGACGTGGCACCCTAAGTG+AGG | + | chr1_3:56552742-56552761 | Msa0127300:intron | 60.0% | |
| ACTGCCTTCTGTGGACCTGC+TGG | + | chr1_3:56554451-56554470 | Msa0127300:CDS | 60.0% | |
| CTGCCTTCTGTGGACCTGCT+GGG | + | chr1_3:56554452-56554471 | Msa0127300:CDS | 60.0% | |
| TGTGGACCAGCTGGGCCAAC+AGG | + | chr1_3:56548374-56548393 | Msa0127300:CDS | 65.0% | |
| TCTCTGCCTGTTGGCCCAGC+TGG | - | chr1_3:56548383-56548402 | None:intergenic | 65.0% | |
| ! | GTAATGGGGCGGGGTGGAGA+CGG | + | chr1_3:56549726-56549745 | Msa0127300:intron | 65.0% |
| TAATGGGGCGGGGTGGAGAC+GGG | + | chr1_3:56549727-56549746 | Msa0127300:intron | 65.0% | |
| AACCCCATCCCCGTTCCCGA+CGG | + | chr1_3:56549830-56549849 | Msa0127300:intron | 65.0% | |
| AACCCGTCGGGAACGGGGAT+GGG | - | chr1_3:56549836-56549855 | None:intergenic | 65.0% | |
| ! | ATCCCCGTTCCCGACGGGTT+CGG | + | chr1_3:56549836-56549855 | Msa0127300:intron | 65.0% |
| TACCCGAACCCGTCGGGAAC+GGG | - | chr1_3:56549842-56549861 | None:intergenic | 65.0% | |
| CGAGGATACCCGAACCCGTC+GGG | - | chr1_3:56549848-56549867 | None:intergenic | 65.0% | |
| GCGAGGATACCCGAACCCGT+CGG | - | chr1_3:56549849-56549868 | None:intergenic | 65.0% | |
| ! | TGGTTCGGGCGGGTAACCAC+AGG | + | chr1_3:56550213-56550232 | Msa0127300:intron | 65.0% |
| CGGGCGGGTAACCACAGGTA+TGG | + | chr1_3:56550218-56550237 | Msa0127300:intron | 65.0% | |
| AATCCGGTCCGGTTCACGGG+TGG | + | chr1_3:56550326-56550345 | Msa0127300:intron | 65.0% | |
| ATCCGGTCCGGTTCACGGGT+GGG | + | chr1_3:56550327-56550346 | Msa0127300:intron | 65.0% | |
| TGCGGGCCGGGTGGACAAAT+CGG | - | chr1_3:56550366-56550385 | None:intergenic | 65.0% | |
| ATTTGTCCACCCGGCCCGCA+TGG | + | chr1_3:56550366-56550385 | Msa0127300:intron | 65.0% | |
| TTTGTCCACCCGGCCCGCAT+GGG | + | chr1_3:56550367-56550386 | Msa0127300:intron | 65.0% | |
| AAAACCCGGACCGACCCGGT+CGG | - | chr1_3:56550483-56550502 | None:intergenic | 65.0% | |
| AGGCCCAGCAGGTCCACAGA+AGG | - | chr1_3:56554458-56554477 | None:intergenic | 65.0% | |
| TGTGGACCTGCTGGGCCTCA+AGG | + | chr1_3:56554460-56554479 | Msa0127300:CDS | 65.0% | |
| !! | GGCATGGTAATGGGGCGGGG+TGG | + | chr1_3:56549720-56549739 | Msa0127300:intron | 70.0% |
| ACCCCATCCCCGTTCCCGAC+GGG | + | chr1_3:56549831-56549850 | Msa0127300:intron | 70.0% | |
| ACCCGTCGGGAACGGGGATG+GGG | - | chr1_3:56549835-56549854 | None:intergenic | 70.0% | |
| GAACCCGTCGGGAACGGGGA+TGG | - | chr1_3:56549837-56549856 | None:intergenic | 70.0% | |
| ! | TCCCCGTTCCCGACGGGTTC+GGG | + | chr1_3:56549837-56549856 | Msa0127300:intron | 70.0% |
| ACCCGAACCCGTCGGGAACG+GGG | - | chr1_3:56549841-56549860 | None:intergenic | 70.0% | |
| GACCCACCCGTGAACCGGAC+CGG | - | chr1_3:56550332-56550351 | None:intergenic | 70.0% | |
| GAACCGGCAACCGGAGGGGT+GGG | - | chr1_3:56550449-56550468 | None:intergenic | 70.0% | |
| GGTCGAACCGGCAACCGGAG+GGG | - | chr1_3:56550453-56550472 | None:intergenic | 70.0% | |
| CGGTCGAACCGGCAACCGGA+GGG | - | chr1_3:56550454-56550473 | None:intergenic | 70.0% | |
| !! | CCTCCGGTTGCCGGTTCGAC+CGG | + | chr1_3:56550452-56550471 | Msa0127300:intron | 70.0% |
| CGACCGGTCGAACCGGCAAC+CGG | - | chr1_3:56550458-56550477 | None:intergenic | 70.0% | |
| !! | CGGTTGCCGGTTCGACCGGT+CGG | + | chr1_3:56550456-56550475 | Msa0127300:intron | 70.0% |
| GTCGGTCCGACCGGTCGAAC+CGG | - | chr1_3:56550465-56550484 | None:intergenic | 70.0% | |
| GTTCGACCGGTCGGACCGAC+CGG | + | chr1_3:56550465-56550484 | Msa0127300:intron | 70.0% | |
| TTCGACCGGTCGGACCGACC+GGG | + | chr1_3:56550466-56550485 | Msa0127300:intron | 70.0% | |
| !! | GCTTGGCCTTGAGGCCCAGC+AGG | - | chr1_3:56554469-56554488 | None:intergenic | 70.0% |
| TGTGACCCATGCGGGCCGGG+TGG | - | chr1_3:56550375-56550394 | None:intergenic | 75.0% | |
| CGGTGTGACCCATGCGGGCC+GGG | - | chr1_3:56550378-56550397 | None:intergenic | 75.0% | |
| CCGGTGTGACCCATGCGGGC+CGG | - | chr1_3:56550379-56550398 | None:intergenic | 75.0% | |
| CCGGCCCGCATGGGTCACAC+CGG | + | chr1_3:56550376-56550395 | Msa0127300:intron | 75.0% | |
| CGGCCCGCATGGGTCACACC+GGG | + | chr1_3:56550377-56550396 | Msa0127300:intron | 75.0% | |
| GACCAACCCGCCCACCCCTC+CGG | + | chr1_3:56550436-56550455 | Msa0127300:intron | 75.0% | |
| AACCGGAGGGGTGGGCGGGT+TGG | - | chr1_3:56550441-56550460 | None:intergenic | 75.0% | |
| CGAACCGGCAACCGGAGGGG+TGG | - | chr1_3:56550450-56550469 | None:intergenic | 75.0% | |
| CCGGTCGAACCGGCAACCGG+AGG | - | chr1_3:56550455-56550474 | None:intergenic | 75.0% | |
| ACCGGTCGGACCGACCGGGT+CGG | + | chr1_3:56550470-56550489 | Msa0127300:intron | 75.0% | |
| ACCGACCCGGTCGGTCCGAC+CGG | - | chr1_3:56550474-56550493 | None:intergenic | 75.0% | |
| TCGGACCGACCGGGTCGGTC+CGG | + | chr1_3:56550475-56550494 | Msa0127300:intron | 75.0% | |
| ! | GCGAGGACGGGGAAGGGGCG+AGG | - | chr1_3:56549866-56549885 | None:intergenic | 80.0% |
| ! | CGGCAACCGGAGGGGTGGGC+GGG | - | chr1_3:56550445-56550464 | None:intergenic | 80.0% |
| ! | CCGGCAACCGGAGGGGTGGG+CGG | - | chr1_3:56550446-56550465 | None:intergenic | 80.0% |
| ! | CCGCCCACCCCTCCGGTTGC+CGG | + | chr1_3:56550443-56550462 | Msa0127300:intron | 80.0% |
| ! | CGGACCGACCGGGTCGGTCC+GGG | + | chr1_3:56550476-56550495 | Msa0127300:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 56548094 | 56555151 | 56548094 | ID=Msa0127300;Name=Msa0127300 |
| chr1_3 | mRNA | 56548094 | 56555151 | 56548094 | ID=Msa0127300-mRNA-1;Parent=Msa0127300;Name=Msa0127300-mRNA-1;_AED=0.37;_eAED=0.37;_QI=61|0.33|0.25|1|0.66|0.5|4|0|274 |
| chr1_3 | exon | 56548094 | 56548424 | 56548094 | ID=Msa0127300-mRNA-1:exon:17864;Parent=Msa0127300-mRNA-1 |
| chr1_3 | exon | 56550889 | 56551026 | 56550889 | ID=Msa0127300-mRNA-1:exon:17865;Parent=Msa0127300-mRNA-1 |
| chr1_3 | exon | 56554265 | 56554510 | 56554265 | ID=Msa0127300-mRNA-1:exon:17866;Parent=Msa0127300-mRNA-1 |
| chr1_3 | exon | 56554981 | 56555151 | 56554981 | ID=Msa0127300-mRNA-1:exon:17867;Parent=Msa0127300-mRNA-1 |
| chr1_3 | five_prime_UTR | 56548094 | 56548154 | 56548094 | ID=Msa0127300-mRNA-1:five_prime_utr;Parent=Msa0127300-mRNA-1 |
| chr1_3 | CDS | 56548155 | 56548424 | 56548155 | ID=Msa0127300-mRNA-1:cds;Parent=Msa0127300-mRNA-1 |
| chr1_3 | CDS | 56550889 | 56551026 | 56550889 | ID=Msa0127300-mRNA-1:cds;Parent=Msa0127300-mRNA-1 |
| chr1_3 | CDS | 56554265 | 56554510 | 56554265 | ID=Msa0127300-mRNA-1:cds;Parent=Msa0127300-mRNA-1 |
| chr1_3 | CDS | 56554981 | 56555151 | 56554981 | ID=Msa0127300-mRNA-1:cds;Parent=Msa0127300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
