AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025650 MtrunA17_Chr1g0180491 100.000 390 0 0 19 408 1 390 0.0 805
Msa0025650 MtrunA17_Chr7g0264651 94.103 390 23 0 19 408 1 390 0.0 741
Msa0025650 MtrunA17_Chr4g0069201 88.601 386 44 0 20 405 4 389 0.0 696
Msa0025650 MtrunA17_Chr7g0270531 86.788 386 51 0 20 405 3 388 0.0 692
Msa0025650 MtrunA17_Chr2g0302931 88.083 386 46 0 20 405 4 389 0.0 691
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025650 AT2G36880.2 92.564 390 29 0 19 408 1 390 0.0 731
Msa0025650 AT2G36880.1 92.564 390 29 0 19 408 1 390 0.0 731
Msa0025650 AT3G17390.1 88.114 387 46 0 19 405 1 387 0.0 695
Msa0025650 AT4G01850.2 87.597 387 48 0 19 405 1 387 0.0 692
Msa0025650 AT4G01850.1 87.597 387 48 0 19 405 1 387 0.0 692
Msa0025650 AT1G02500.1 87.597 387 48 0 19 405 1 387 0.0 687
Msa0025650 AT1G02500.2 87.597 387 48 0 19 405 1 387 0.0 687

Find 138 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCCAGATAAGGATATTT+TGG 0.191529 1_1:-49011097 Msa0025650:CDS
TTAAATTTCATTACTGTTAC+TGG 0.198871 1_1:-49010638 Msa0025650:three_prime_UTR
ACTGCTGCATATGGGCATTT+TGG 0.208137 1_1:-49010985 Msa0025650:CDS
AGCAAGAAGCCTGAGGAAAT+TGG 0.257775 1_1:-49011744 Msa0025650:CDS
CAAATATTACAGAATTCATT+AGG 0.259530 1_1:+49012482 None:intergenic
TGCTCAAGCCCAAGGCTTAA+TGG 0.276784 1_1:-49010924 Msa0025650:exon
ACTAACATGGTTATGGTCTT+TGG 0.278992 1_1:-49011936 Msa0025650:CDS
TAGCATTCAACACTTTCTTT+TGG 0.295521 1_1:-49012332 Msa0025650:five_prime_UTR
TGAACTCCTTGAGCAATATC+AGG 0.302469 1_1:+49011777 None:intergenic
GCCCATATGCAGCAGTCTTC+TGG 0.320018 1_1:+49010992 None:intergenic
TCACAAGAGGTGGCAAATTC+AGG 0.332737 1_1:-49011017 Msa0025650:CDS
AGAACCAAAATATCCTTATC+TGG 0.337009 1_1:+49011093 None:intergenic
AAATAGTTCGTGACACTTGC+AGG 0.350940 1_1:-49011878 Msa0025650:CDS
AGGATTGTGTGCACGCGAAT+AGG 0.355191 1_1:+49011525 None:intergenic
TATTGATACCTATGGTGGTT+GGG 0.358518 1_1:-49011313 Msa0025650:CDS
TTTGTGGACACTTACAAAAC+TGG 0.364762 1_1:-49011123 Msa0025650:CDS
CTCATAGTCCACCTTTGCCT+TGG 0.368509 1_1:+49011902 None:intergenic
GGAGTGGTGCTTACATTGTT+AGG 0.368655 1_1:-49011239 Msa0025650:CDS
GTGACACTTGCAGGAGTATT+GGG 0.373907 1_1:-49011869 Msa0025650:CDS
GTTGAATACAAGAATGATAA+TGG 0.375620 1_1:-49011558 Msa0025650:CDS
GGTGGACCTCATGGAGATGC+TGG 0.378198 1_1:-49011357 Msa0025650:CDS
ATCAATAATGATCTTCCTTC+CGG 0.379520 1_1:+49011329 None:intergenic
CATGTGCTTGCCACTAAAAT+TGG 0.379944 1_1:-49011654 Msa0025650:CDS
CGTGACACTTGCAGGAGTAT+TGG 0.381615 1_1:-49011870 Msa0025650:CDS
CATGGTGGAGGTGCCTTCTC+AGG 0.384431 1_1:-49011285 Msa0025650:CDS
TTACAGATTCTGAGGTGAAT+AGG 0.390519 1_1:+49012066 None:intergenic
TAGGTGTGGACTGGAGGCTT+TGG 0.393623 1_1:-49010714 Msa0025650:three_prime_UTR
AAATATTACAGAATTCATTA+GGG 0.398110 1_1:+49012483 None:intergenic
TGCTCGTCGTTGTATTGTGC+AGG 0.400285 1_1:-49011184 Msa0025650:CDS
GTGCAGGTTTCTTATGCAAT+TGG 0.405905 1_1:-49011168 Msa0025650:CDS
CTGCTGGCTGTAGTTTCTGA+TGG 0.409216 1_1:-49010481 Msa0025650:three_prime_UTR
TCTTGTATTCAACGGTAACT+TGG 0.410805 1_1:+49011568 None:intergenic
AGAGCCACTTTCTGTGTTTG+TGG 0.412076 1_1:-49011139 Msa0025650:CDS
ACAGTCTCCCATGTGAAATC+AGG 0.412232 1_1:+49010952 None:intergenic
TCAGGTAGGTTTGTGATTGG+TGG 0.413640 1_1:-49011375 Msa0025650:CDS
TACCAGAAGACTGCTGCATA+TGG 0.415164 1_1:-49010994 Msa0025650:CDS
GGTTGGGGTGCTCATGGTGG+AGG 0.416114 1_1:-49011297 Msa0025650:CDS
GGATTGTGTGCACGCGAATA+GGG 0.416704 1_1:+49011526 None:intergenic
ACCTGGTCACAGATCTTGTC+GGG 0.417397 1_1:+49012032 None:intergenic
TTGTCGTCAAGGTATTTAGC+TGG 0.418579 1_1:+49011420 None:intergenic
CCTTCAGGTAGGTTTGTGAT+TGG 0.422961 1_1:-49011378 Msa0025650:CDS
ACTGGAGGCTTTGGCACAAT+AGG 0.424191 1_1:-49010705 Msa0025650:three_prime_UTR
ATAAGACATGCCCATGGGTT+AGG 0.433400 1_1:-49011605 Msa0025650:CDS
GGTGATCAAGGTCACATGTT+TGG 0.433876 1_1:-49011717 Msa0025650:CDS
CCCAAGGCTTAATGGAGTTA+TGG 0.434843 1_1:-49010916 Msa0025650:exon
TATGGTGGTTGGGGTGCTCA+TGG 0.437298 1_1:-49011303 Msa0025650:CDS
CTTTCTAACTTCAGTGAGCT+TGG 0.438150 1_1:+49011629 None:intergenic
GGTTGGATCCTTTCCTGAGA+AGG 0.441186 1_1:+49011272 None:intergenic
ACCATAACTCCATTAAGCCT+TGG 0.441766 1_1:+49010915 None:intergenic
ATCTTCCATCTCAACCCTTC+AGG 0.447635 1_1:-49011393 Msa0025650:CDS
TTTCAGCTTAGATGAGAAAT+GGG 0.447738 1_1:-49010755 Msa0025650:three_prime_UTR
CCATAACTCCATTAAGCCTT+GGG 0.448608 1_1:+49010916 None:intergenic
CGTCGTGTTGAGTTGAAATG+AGG 0.453932 1_1:+49011505 None:intergenic
TCACCAGCTCCAATTTCCTC+AGG 0.463353 1_1:+49011735 None:intergenic
TGTGTGAGTGGCATTAGTTC+AGG 0.465165 1_1:+49011675 None:intergenic
CCACTCCTGTCCACCTTGGT+TGG 0.465451 1_1:+49011255 None:intergenic
GAAATTGGAGCTGGTGATCA+AGG 0.483468 1_1:-49011729 Msa0025650:CDS
TGCCACCTCTTGTGAGGTCA+AGG 0.490427 1_1:+49011025 None:intergenic
AGGATCCAACCAAGGTGGAC+AGG 0.494928 1_1:-49011260 Msa0025650:CDS
GAATTATTTCCTTTGCATAG+TGG 0.495266 1_1:-49012256 Msa0025650:intron
AGGTTGATAGCAATCATTCC+AGG 0.495973 1_1:+49011045 None:intergenic
TGCCATCCTTGATGCATGCT+TGG 0.499134 1_1:-49012003 Msa0025650:CDS
AGGTATTTAGCTGGGACGAC+AGG 0.499951 1_1:+49011429 None:intergenic
AACTGGAAAGATTCCAGATA+AGG 0.500009 1_1:-49011106 Msa0025650:CDS
GGGTTTGTGTCTGCTGATGT+TGG 0.504850 1_1:-49011849 Msa0025650:CDS
AGTAAAATCAAAATCAAAAG+TGG 0.506240 1_1:+49010664 None:intergenic
GAGCAGATATGTGCTCTACT+AGG 0.509407 1_1:-49010733 Msa0025650:three_prime_UTR
TGCCCATGGGTTAGGCCTGA+TGG 0.510007 1_1:-49011597 Msa0025650:CDS
CAAGGATGGCATCTGAAACC+TGG 0.510900 1_1:+49012015 None:intergenic
CATGGAGATGCTGGGCTCAC+CGG 0.511049 1_1:-49011348 Msa0025650:CDS
TTATTGATACCTATGGTGGT+TGG 0.512065 1_1:-49011314 Msa0025650:CDS
AAGATCATTATTGATACCTA+TGG 0.514480 1_1:-49011321 Msa0025650:CDS
TCAAAAGTGGTAGCTAATGT+TGG 0.517595 1_1:+49010677 None:intergenic
GTGTCCACAAACACAGAAAG+TGG 0.522772 1_1:+49011135 None:intergenic
CTTGTATTCAACGGTAACTT+GGG 0.524167 1_1:+49011569 None:intergenic
CTCTACTAGGTGTGGACTGG+AGG 0.524259 1_1:-49010720 Msa0025650:three_prime_UTR
GTAACTTGGGTCTTACCATC+AGG 0.526446 1_1:+49011582 None:intergenic
ATTGATACCTATGGTGGTTG+GGG 0.527612 1_1:-49011312 Msa0025650:CDS
ATTATCATTCTTGTATTCAA+CGG 0.531052 1_1:+49011560 None:intergenic
GATATTGCTCAAGGAGTTCA+CGG 0.536055 1_1:-49011774 Msa0025650:CDS
GTGGACCTCATGGAGATGCT+GGG 0.537821 1_1:-49011356 Msa0025650:CDS
CCCCGACAAGATCTGTGACC+AGG 0.538168 1_1:-49012033 Msa0025650:CDS
TAGTTCAGGTGTTTCGTCAG+TGG 0.542460 1_1:+49011689 None:intergenic
TTTGTGATTGGTGGACCTCA+TGG 0.544583 1_1:-49011366 Msa0025650:CDS
TACCATCAGGCCTAACCCAT+GGG 0.547526 1_1:+49011595 None:intergenic
TGTCGTCAAGGTATTTAGCT+GGG 0.547725 1_1:+49011421 None:intergenic
TCGCAACCGACTTGTGTGGT+TGG 0.549227 1_1:-49010584 Msa0025650:three_prime_UTR
ACCTACCTGAAGGGTTGAGA+TGG 0.549506 1_1:+49011388 None:intergenic
ACCAGAAGACTGCTGCATAT+GGG 0.557404 1_1:-49010993 Msa0025650:CDS
GTGCTCTACTAGGTGTGGAC+TGG 0.558896 1_1:-49010723 Msa0025650:three_prime_UTR
CATCAGAAACTACAGCCAGC+AGG 0.559940 1_1:+49010482 None:intergenic
ACAAACACAGAAAGTGGCTC+TGG 0.562649 1_1:+49011141 None:intergenic
GGTGGTTGGGGTGCTCATGG+TGG 0.563645 1_1:-49011300 Msa0025650:CDS
TGAAGGGTTGAGATGGAAGA+TGG 0.563688 1_1:+49011395 None:intergenic
AACCTGGTCACAGATCTTGT+CGG 0.563707 1_1:+49012031 None:intergenic
AAGCCTGAGGAAATTGGAGC+TGG 0.569064 1_1:-49011738 Msa0025650:CDS
AGCACCACTCCTGTCCACCT+TGG 0.571010 1_1:+49011251 None:intergenic
CTCCAAGCATGCATCAAGGA+TGG 0.575330 1_1:+49012001 None:intergenic
ATCATTATTGATACCTATGG+TGG 0.575435 1_1:-49011318 Msa0025650:CDS
ATGAGCACCCCAACCACCAT+AGG 0.575628 1_1:+49011305 None:intergenic
CAAGAATGATAATGGAGCCA+TGG 0.577331 1_1:-49011550 Msa0025650:CDS
GGAAGATGGTCTTGTCGTCA+AGG 0.577435 1_1:+49011409 None:intergenic
TTACCATCAGGCCTAACCCA+TGG 0.578836 1_1:+49011594 None:intergenic
TGTGAAGATGCTCAAGCCCA+AGG 0.581845 1_1:-49010932 Msa0025650:CDS
ACCTTCGTTTACAGATTCTG+AGG 0.589403 1_1:+49012058 None:intergenic
TGAAATCACAACCAAGGCAA+AGG 0.590046 1_1:-49011913 Msa0025650:CDS
CCAATCACAAACCTACCTGA+AGG 0.592190 1_1:+49011378 None:intergenic
AACCTTGACCTCACAAGAGG+TGG 0.593643 1_1:-49011027 Msa0025650:CDS
GGAGCAAGATAAAGAGAGCA+AGG 0.594380 1_1:-49011982 Msa0025650:CDS
AATCACAACCAAGGCAAAGG+TGG 0.598400 1_1:-49011910 Msa0025650:CDS
TGAATTTGCCACCTCTTGTG+AGG 0.598537 1_1:+49011019 None:intergenic
CAGAGCCCTGATATTGCTCA+AGG 0.602611 1_1:-49011783 Msa0025650:CDS
CTTGCTCCAAGCATGCATCA+AGG 0.602878 1_1:+49011997 None:intergenic
GAGATGCTGGGCTCACCGGA+AGG 0.606502 1_1:-49011344 Msa0025650:CDS
TTTCTCGCAACCGACTTGTG+TGG 0.606583 1_1:-49010588 Msa0025650:three_prime_UTR
GAACTCCTTGAGCAATATCA+GGG 0.613163 1_1:+49011778 None:intergenic
GAAAGAATAAGACATGCCCA+TGG 0.616428 1_1:-49011611 Msa0025650:CDS
TGGAGGTGCCTTCTCAGGAA+AGG 0.621106 1_1:-49011280 Msa0025650:CDS
GTGACGATCCTGATTTCACA+TGG 0.622231 1_1:-49010960 Msa0025650:CDS
GATATGTGCTCTACTAGGTG+TGG 0.629186 1_1:-49010728 Msa0025650:three_prime_UTR
CAATCACAAACCTACCTGAA+GGG 0.630070 1_1:+49011379 None:intergenic
ATCAACCTTGACCTCACAAG+AGG 0.632107 1_1:-49011030 Msa0025650:CDS
AGATTCTGAGGTGAATAGGA+AGG 0.635764 1_1:+49012070 None:intergenic
TTTACACCAACCACACAAGT+CGG 0.635772 1_1:+49010578 None:intergenic
TCCATCTCAACCCTTCAGGT+AGG 0.636963 1_1:-49011389 Msa0025650:CDS
AAAGAATAAGACATGCCCAT+GGG 0.640830 1_1:-49011610 Msa0025650:CDS
CCAACCAAGGTGGACAGGAG+TGG 0.650759 1_1:-49011255 Msa0025650:CDS
ACCTCAGAATCTGTAAACGA+AGG 0.651225 1_1:-49012059 Msa0025650:CDS
GTGGCAAGCACATGTGTGAG+TGG 0.669118 1_1:+49011663 None:intergenic
CTCAGGAAAGGATCCAACCA+AGG 0.675495 1_1:-49011268 Msa0025650:CDS
CTTTGGTGAAATCACAACCA+AGG 0.678587 1_1:-49011919 Msa0025650:CDS
CTTACATTACCACTATGCAA+AGG 0.681295 1_1:+49012247 None:intergenic
TCACTTGAGCAAGAAGCCTG+AGG 0.682617 1_1:-49011751 Msa0025650:CDS
GTGAGCCCAGCATCTCCATG+AGG 0.687695 1_1:+49011351 None:intergenic
GTGCACGCGAATAGGGACCA+TGG 0.688328 1_1:+49011533 None:intergenic
AGGAAAGGATCCAACCAAGG+TGG 0.705983 1_1:-49011265 Msa0025650:CDS
TGACGATCCTGATTTCACAT+GGG 0.709241 1_1:-49010959 Msa0025650:CDS
CCTGGTCACAGATCTTGTCG+GGG 0.713673 1_1:+49012033 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATATTGTATAATATAAT+CGG + chr1_1:49012181-49012200 None:intergenic 10.0%
!! CAAATATTGTATAATATAAT+CGG + chr1_1:49012181-49012200 None:intergenic 10.0%
!! AAATATTACAGAATTCATTA+GGG + chr1_1:49010492-49010511 None:intergenic 15.0%
!!! CAATAATATTTTGTTTGTTT+TGG - chr1_1:49010563-49010582 Msa0025650:three_prime_UTR 15.0%
!! AAATATTACAGAATTCATTA+GGG + chr1_1:49010492-49010511 None:intergenic 15.0%
!!! CAATAATATTTTGTTTGTTT+TGG - chr1_1:49010563-49010582 Msa0025650:three_prime_UTR 15.0%
!! CAAATATTACAGAATTCATT+AGG + chr1_1:49010493-49010512 None:intergenic 20.0%
!! ACATCTAATATATATACTCT+TGG - chr1_1:49010845-49010864 Msa0025650:intron 20.0%
!! ATTATCATTCTTGTATTCAA+CGG + chr1_1:49011415-49011434 None:intergenic 20.0%
!!! ATCATCTTTCTTATTTTTTG+TGG - chr1_1:49012110-49012129 Msa0025650:intron 20.0%
!! AGTAAAATCAAAATCAAAAG+TGG + chr1_1:49012311-49012330 None:intergenic 20.0%
!! TTAAATTTCATTACTGTTAC+TGG - chr1_1:49012334-49012353 Msa0025650:five_prime_UTR 20.0%
!! CAAATATTACAGAATTCATT+AGG + chr1_1:49010493-49010512 None:intergenic 20.0%
!! ACATCTAATATATATACTCT+TGG - chr1_1:49010845-49010864 Msa0025650:intron 20.0%
!! ATTATCATTCTTGTATTCAA+CGG + chr1_1:49011415-49011434 None:intergenic 20.0%
!!! ATCATCTTTCTTATTTTTTG+TGG - chr1_1:49012110-49012129 Msa0025650:intron 20.0%
!! AGTAAAATCAAAATCAAAAG+TGG + chr1_1:49012311-49012330 None:intergenic 20.0%
!! TTAAATTTCATTACTGTTAC+TGG - chr1_1:49012334-49012353 Msa0025650:five_prime_UTR 20.0%
!!! TCTTGGTCTTATTCTTTTTT+TGG - chr1_1:49010862-49010881 Msa0025650:intron 25.0%
!!! TTTTTTTGGAACATCAGATA+TGG - chr1_1:49010876-49010895 Msa0025650:intron 25.0%
! TACAAAAACTAACATGGTTA+TGG - chr1_1:49011029-49011048 Msa0025650:CDS 25.0%
! GTTGAATACAAGAATGATAA+TGG - chr1_1:49011414-49011433 Msa0025650:CDS 25.0%
! AAGATCATTATTGATACCTA+TGG - chr1_1:49011651-49011670 Msa0025650:CDS 25.0%
! ATGGAAAACTGCAAAAAAAT+AGG - chr1_1:49012510-49012529 Msa0025650:five_prime_UTR 25.0%
! TGGAAAACTGCAAAAAAATA+GGG - chr1_1:49012511-49012530 Msa0025650:five_prime_UTR 25.0%
!!! TCTTGGTCTTATTCTTTTTT+TGG - chr1_1:49010862-49010881 Msa0025650:intron 25.0%
!!! TTTTTTTGGAACATCAGATA+TGG - chr1_1:49010876-49010895 Msa0025650:intron 25.0%
! TACAAAAACTAACATGGTTA+TGG - chr1_1:49011029-49011048 Msa0025650:CDS 25.0%
! GTTGAATACAAGAATGATAA+TGG - chr1_1:49011414-49011433 Msa0025650:CDS 25.0%
! AAGATCATTATTGATACCTA+TGG - chr1_1:49011651-49011670 Msa0025650:CDS 25.0%
! ATGGAAAACTGCAAAAAAAT+AGG - chr1_1:49012510-49012529 Msa0025650:five_prime_UTR 25.0%
! TGGAAAACTGCAAAAAAATA+GGG - chr1_1:49012511-49012530 Msa0025650:five_prime_UTR 25.0%
!!! TGTTTTGGTAAACAAGAAGT+TGG - chr1_1:49010578-49010597 Msa0025650:three_prime_UTR 30.0%
!! CTTTTTAAGCAACAGATCAA+AGG - chr1_1:49010611-49010630 Msa0025650:three_prime_UTR 30.0%
! TAGCATTCAACACTTTCTTT+TGG - chr1_1:49010640-49010659 Msa0025650:three_prime_UTR 30.0%
! AGCATTCAACACTTTCTTTT+GGG - chr1_1:49010641-49010660 Msa0025650:three_prime_UTR 30.0%
GAATTATTTCCTTTGCATAG+TGG - chr1_1:49010716-49010735 Msa0025650:three_prime_UTR 30.0%
! CAATTGACTACAGATTTTGA+AGG + chr1_1:49010806-49010825 None:intergenic 30.0%
!!! AACCATGTTAGTTTTTGTAC+AGG + chr1_1:49011028-49011047 None:intergenic 30.0%
ATCAATAATGATCTTCCTTC+CGG + chr1_1:49011646-49011665 None:intergenic 30.0%
ATCATTATTGATACCTATGG+TGG - chr1_1:49011654-49011673 Msa0025650:CDS 30.0%
! GATTCCAGATAAGGATATTT+TGG - chr1_1:49011875-49011894 Msa0025650:CDS 30.0%
AGAACCAAAATATCCTTATC+TGG + chr1_1:49011882-49011901 None:intergenic 30.0%
!!! GGATATTTTGGTTCTGATTA+AGG - chr1_1:49011887-49011906 Msa0025650:CDS 30.0%
!!! TTAAGGAGAATTTTGACTTC+AGG - chr1_1:49011904-49011923 Msa0025650:CDS 30.0%
!! TGTGGTGATCTTTCTTATTT+TGG - chr1_1:49012128-49012147 Msa0025650:intron 30.0%
!!! GTGGTGATCTTTCTTATTTT+GGG - chr1_1:49012129-49012148 Msa0025650:intron 30.0%
! TTTTCAGCTTAGATGAGAAA+TGG - chr1_1:49012216-49012235 Msa0025650:intron 30.0%
TTTCAGCTTAGATGAGAAAT+GGG - chr1_1:49012217-49012236 Msa0025650:intron 30.0%
!!! TGTTTTGGTAAACAAGAAGT+TGG - chr1_1:49010578-49010597 Msa0025650:three_prime_UTR 30.0%
!! CTTTTTAAGCAACAGATCAA+AGG - chr1_1:49010611-49010630 Msa0025650:three_prime_UTR 30.0%
! TAGCATTCAACACTTTCTTT+TGG - chr1_1:49010640-49010659 Msa0025650:three_prime_UTR 30.0%
! AGCATTCAACACTTTCTTTT+GGG - chr1_1:49010641-49010660 Msa0025650:three_prime_UTR 30.0%
GAATTATTTCCTTTGCATAG+TGG - chr1_1:49010716-49010735 Msa0025650:three_prime_UTR 30.0%
! CAATTGACTACAGATTTTGA+AGG + chr1_1:49010806-49010825 None:intergenic 30.0%
!!! AACCATGTTAGTTTTTGTAC+AGG + chr1_1:49011028-49011047 None:intergenic 30.0%
ATCAATAATGATCTTCCTTC+CGG + chr1_1:49011646-49011665 None:intergenic 30.0%
ATCATTATTGATACCTATGG+TGG - chr1_1:49011654-49011673 Msa0025650:CDS 30.0%
! GATTCCAGATAAGGATATTT+TGG - chr1_1:49011875-49011894 Msa0025650:CDS 30.0%
AGAACCAAAATATCCTTATC+TGG + chr1_1:49011882-49011901 None:intergenic 30.0%
!!! GGATATTTTGGTTCTGATTA+AGG - chr1_1:49011887-49011906 Msa0025650:CDS 30.0%
!!! TTAAGGAGAATTTTGACTTC+AGG - chr1_1:49011904-49011923 Msa0025650:CDS 30.0%
!! TGTGGTGATCTTTCTTATTT+TGG - chr1_1:49012128-49012147 Msa0025650:intron 30.0%
!!! GTGGTGATCTTTCTTATTTT+GGG - chr1_1:49012129-49012148 Msa0025650:intron 30.0%
! TTTTCAGCTTAGATGAGAAA+TGG - chr1_1:49012216-49012235 Msa0025650:intron 30.0%
TTTCAGCTTAGATGAGAAAT+GGG - chr1_1:49012217-49012236 Msa0025650:intron 30.0%
! ATTCAACACTTTCTTTTGGG+CGG - chr1_1:49010644-49010663 Msa0025650:three_prime_UTR 35.0%
CTTACATTACCACTATGCAA+AGG + chr1_1:49010728-49010747 None:intergenic 35.0%
!! TTACAGATTCTGAGGTGAAT+AGG + chr1_1:49010909-49010928 None:intergenic 35.0%
GACCTGTACAAAAACTAACA+TGG - chr1_1:49011023-49011042 Msa0025650:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG - chr1_1:49011036-49011055 Msa0025650:CDS 35.0%
AAAGAATAAGACATGCCCAT+GGG - chr1_1:49011362-49011381 Msa0025650:CDS 35.0%
CTTGTATTCAACGGTAACTT+GGG + chr1_1:49011406-49011425 None:intergenic 35.0%
TCTTGTATTCAACGGTAACT+TGG + chr1_1:49011407-49011426 None:intergenic 35.0%
TTATTGATACCTATGGTGGT+TGG - chr1_1:49011658-49011677 Msa0025650:CDS 35.0%
TATTGATACCTATGGTGGTT+GGG - chr1_1:49011659-49011678 Msa0025650:CDS 35.0%
TTTGTGGACACTTACAAAAC+TGG - chr1_1:49011849-49011868 Msa0025650:CDS 35.0%
AACTGGAAAGATTCCAGATA+AGG - chr1_1:49011866-49011885 Msa0025650:CDS 35.0%
! TGGAGTTATGGTATTTTCAG+AGG - chr1_1:49012068-49012087 Msa0025650:CDS 35.0%
! AGTTATGGTATTTTCAGAGG+TGG - chr1_1:49012071-49012090 Msa0025650:CDS 35.0%
!! CAGAGGTGGTTATTTTATCA+TGG - chr1_1:49012085-49012104 Msa0025650:intron 35.0%
TCAAAAGTGGTAGCTAATGT+TGG + chr1_1:49012298-49012317 None:intergenic 35.0%
! CATACAGAAAATTTTCCTGC+TGG - chr1_1:49012475-49012494 Msa0025650:five_prime_UTR 35.0%
! ATTCAACACTTTCTTTTGGG+CGG - chr1_1:49010644-49010663 Msa0025650:three_prime_UTR 35.0%
CTTACATTACCACTATGCAA+AGG + chr1_1:49010728-49010747 None:intergenic 35.0%
!! TTACAGATTCTGAGGTGAAT+AGG + chr1_1:49010909-49010928 None:intergenic 35.0%
GACCTGTACAAAAACTAACA+TGG - chr1_1:49011023-49011042 Msa0025650:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG - chr1_1:49011036-49011055 Msa0025650:CDS 35.0%
AAAGAATAAGACATGCCCAT+GGG - chr1_1:49011362-49011381 Msa0025650:CDS 35.0%
CTTGTATTCAACGGTAACTT+GGG + chr1_1:49011406-49011425 None:intergenic 35.0%
TCTTGTATTCAACGGTAACT+TGG + chr1_1:49011407-49011426 None:intergenic 35.0%
TTATTGATACCTATGGTGGT+TGG - chr1_1:49011658-49011677 Msa0025650:CDS 35.0%
TATTGATACCTATGGTGGTT+GGG - chr1_1:49011659-49011678 Msa0025650:CDS 35.0%
TTTGTGGACACTTACAAAAC+TGG - chr1_1:49011849-49011868 Msa0025650:CDS 35.0%
AACTGGAAAGATTCCAGATA+AGG - chr1_1:49011866-49011885 Msa0025650:CDS 35.0%
! TGGAGTTATGGTATTTTCAG+AGG - chr1_1:49012068-49012087 Msa0025650:CDS 35.0%
! AGTTATGGTATTTTCAGAGG+TGG - chr1_1:49012071-49012090 Msa0025650:CDS 35.0%
!! CAGAGGTGGTTATTTTATCA+TGG - chr1_1:49012085-49012104 Msa0025650:intron 35.0%
TCAAAAGTGGTAGCTAATGT+TGG + chr1_1:49012298-49012317 None:intergenic 35.0%
! CATACAGAAAATTTTCCTGC+TGG - chr1_1:49012475-49012494 Msa0025650:five_prime_UTR 35.0%
! TTCAACACTTTCTTTTGGGC+GGG - chr1_1:49010645-49010664 Msa0025650:three_prime_UTR 40.0%
!! AGATTCTGAGGTGAATAGGA+AGG + chr1_1:49010905-49010924 None:intergenic 40.0%
ACCTCAGAATCTGTAAACGA+AGG - chr1_1:49010913-49010932 Msa0025650:exon 40.0%
ACCTTCGTTTACAGATTCTG+AGG + chr1_1:49010917-49010936 None:intergenic 40.0%
CTTTGGTGAAATCACAACCA+AGG - chr1_1:49011053-49011072 Msa0025650:CDS 40.0%
TGAAATCACAACCAAGGCAA+AGG - chr1_1:49011059-49011078 Msa0025650:CDS 40.0%
AAATAGTTCGTGACACTTGC+AGG - chr1_1:49011094-49011113 Msa0025650:CDS 40.0%
GAACTCCTTGAGCAATATCA+GGG + chr1_1:49011197-49011216 None:intergenic 40.0%
TGAACTCCTTGAGCAATATC+AGG + chr1_1:49011198-49011217 None:intergenic 40.0%
GATATTGCTCAAGGAGTTCA+CGG - chr1_1:49011198-49011217 Msa0025650:CDS 40.0%
CATGTGCTTGCCACTAAAAT+TGG - chr1_1:49011318-49011337 Msa0025650:CDS 40.0%
CTTTCTAACTTCAGTGAGCT+TGG + chr1_1:49011346-49011365 None:intergenic 40.0%
GAAAGAATAAGACATGCCCA+TGG - chr1_1:49011361-49011380 Msa0025650:CDS 40.0%
!! CAAGAATGATAATGGAGCCA+TGG - chr1_1:49011422-49011441 Msa0025650:CDS 40.0%
! TGTCGTCAAGGTATTTAGCT+GGG + chr1_1:49011554-49011573 None:intergenic 40.0%
! TTGTCGTCAAGGTATTTAGC+TGG + chr1_1:49011555-49011574 None:intergenic 40.0%
CAATCACAAACCTACCTGAA+GGG + chr1_1:49011596-49011615 None:intergenic 40.0%
ATTGATACCTATGGTGGTTG+GGG - chr1_1:49011660-49011679 Msa0025650:CDS 40.0%
!! CAAAAAGTGTTGTCGCTTCA+GGG - chr1_1:49011763-49011782 Msa0025650:CDS 40.0%
GTGCAGGTTTCTTATGCAAT+TGG - chr1_1:49011804-49011823 Msa0025650:CDS 40.0%
!! AGGTTGATAGCAATCATTCC+AGG + chr1_1:49011930-49011949 None:intergenic 40.0%
TGACGATCCTGATTTCACAT+GGG - chr1_1:49012013-49012032 Msa0025650:CDS 40.0%
CCATAACTCCATTAAGCCTT+GGG + chr1_1:49012059-49012078 None:intergenic 40.0%
ACCATAACTCCATTAAGCCT+TGG + chr1_1:49012060-49012079 None:intergenic 40.0%
TTTACACCAACCACACAAGT+CGG + chr1_1:49012397-49012416 None:intergenic 40.0%
! TTCAACACTTTCTTTTGGGC+GGG - chr1_1:49010645-49010664 Msa0025650:three_prime_UTR 40.0%
!! AGATTCTGAGGTGAATAGGA+AGG + chr1_1:49010905-49010924 None:intergenic 40.0%
ACCTCAGAATCTGTAAACGA+AGG - chr1_1:49010913-49010932 Msa0025650:exon 40.0%
ACCTTCGTTTACAGATTCTG+AGG + chr1_1:49010917-49010936 None:intergenic 40.0%
CTTTGGTGAAATCACAACCA+AGG - chr1_1:49011053-49011072 Msa0025650:CDS 40.0%
TGAAATCACAACCAAGGCAA+AGG - chr1_1:49011059-49011078 Msa0025650:CDS 40.0%
AAATAGTTCGTGACACTTGC+AGG - chr1_1:49011094-49011113 Msa0025650:CDS 40.0%
GAACTCCTTGAGCAATATCA+GGG + chr1_1:49011197-49011216 None:intergenic 40.0%
TGAACTCCTTGAGCAATATC+AGG + chr1_1:49011198-49011217 None:intergenic 40.0%
GATATTGCTCAAGGAGTTCA+CGG - chr1_1:49011198-49011217 Msa0025650:CDS 40.0%
CATGTGCTTGCCACTAAAAT+TGG - chr1_1:49011318-49011337 Msa0025650:CDS 40.0%
CTTTCTAACTTCAGTGAGCT+TGG + chr1_1:49011346-49011365 None:intergenic 40.0%
GAAAGAATAAGACATGCCCA+TGG - chr1_1:49011361-49011380 Msa0025650:CDS 40.0%
!! CAAGAATGATAATGGAGCCA+TGG - chr1_1:49011422-49011441 Msa0025650:CDS 40.0%
! TGTCGTCAAGGTATTTAGCT+GGG + chr1_1:49011554-49011573 None:intergenic 40.0%
! TTGTCGTCAAGGTATTTAGC+TGG + chr1_1:49011555-49011574 None:intergenic 40.0%
CAATCACAAACCTACCTGAA+GGG + chr1_1:49011596-49011615 None:intergenic 40.0%
ATTGATACCTATGGTGGTTG+GGG - chr1_1:49011660-49011679 Msa0025650:CDS 40.0%
!! CAAAAAGTGTTGTCGCTTCA+GGG - chr1_1:49011763-49011782 Msa0025650:CDS 40.0%
GTGCAGGTTTCTTATGCAAT+TGG - chr1_1:49011804-49011823 Msa0025650:CDS 40.0%
!! AGGTTGATAGCAATCATTCC+AGG + chr1_1:49011930-49011949 None:intergenic 40.0%
TGACGATCCTGATTTCACAT+GGG - chr1_1:49012013-49012032 Msa0025650:CDS 40.0%
CCATAACTCCATTAAGCCTT+GGG + chr1_1:49012059-49012078 None:intergenic 40.0%
ACCATAACTCCATTAAGCCT+TGG + chr1_1:49012060-49012079 None:intergenic 40.0%
TTTACACCAACCACACAAGT+CGG + chr1_1:49012397-49012416 None:intergenic 40.0%
! TCAACACTTTCTTTTGGGCG+GGG - chr1_1:49010646-49010665 Msa0025650:three_prime_UTR 45.0%
AACCTGGTCACAGATCTTGT+CGG + chr1_1:49010944-49010963 None:intergenic 45.0%
GGAGCAAGATAAAGAGAGCA+AGG - chr1_1:49010990-49011009 Msa0025650:CDS 45.0%
! AGTTTTTGTACAGGTCTCGC+AGG + chr1_1:49011019-49011038 None:intergenic 45.0%
AATCACAACCAAGGCAAAGG+TGG - chr1_1:49011062-49011081 Msa0025650:CDS 45.0%
!! GTGACACTTGCAGGAGTATT+GGG - chr1_1:49011103-49011122 Msa0025650:CDS 45.0%
AGCAAGAAGCCTGAGGAAAT+TGG - chr1_1:49011228-49011247 Msa0025650:CDS 45.0%
GAAATTGGAGCTGGTGATCA+AGG - chr1_1:49011243-49011262 Msa0025650:CDS 45.0%
GGTGATCAAGGTCACATGTT+TGG - chr1_1:49011255-49011274 Msa0025650:CDS 45.0%
TAGTTCAGGTGTTTCGTCAG+TGG + chr1_1:49011286-49011305 None:intergenic 45.0%
TGTGTGAGTGGCATTAGTTC+AGG + chr1_1:49011300-49011319 None:intergenic 45.0%
! GAGCTTGGCACCAATTTTAG+TGG + chr1_1:49011331-49011350 None:intergenic 45.0%
ATAAGACATGCCCATGGGTT+AGG - chr1_1:49011367-49011386 Msa0025650:CDS 45.0%
GTAACTTGGGTCTTACCATC+AGG + chr1_1:49011393-49011412 None:intergenic 45.0%
!! CGTCGTGTTGAGTTGAAATG+AGG + chr1_1:49011470-49011489 None:intergenic 45.0%
TGAAGGGTTGAGATGGAAGA+TGG + chr1_1:49011580-49011599 None:intergenic 45.0%
ATCTTCCATCTCAACCCTTC+AGG - chr1_1:49011579-49011598 Msa0025650:CDS 45.0%
CCAATCACAAACCTACCTGA+AGG + chr1_1:49011597-49011616 None:intergenic 45.0%
CCTTCAGGTAGGTTTGTGAT+TGG - chr1_1:49011594-49011613 Msa0025650:CDS 45.0%
TCAGGTAGGTTTGTGATTGG+TGG - chr1_1:49011597-49011616 Msa0025650:CDS 45.0%
! TTTGTGATTGGTGGACCTCA+TGG - chr1_1:49011606-49011625 Msa0025650:CDS 45.0%
GGAGTGGTGCTTACATTGTT+AGG - chr1_1:49011733-49011752 Msa0025650:CDS 45.0%
!! GCAAAAAGTGTTGTCGCTTC+AGG - chr1_1:49011762-49011781 Msa0025650:CDS 45.0%
ACAAACACAGAAAGTGGCTC+TGG + chr1_1:49011834-49011853 None:intergenic 45.0%
! AGAGCCACTTTCTGTGTTTG+TGG - chr1_1:49011833-49011852 Msa0025650:CDS 45.0%
GTGTCCACAAACACAGAAAG+TGG + chr1_1:49011840-49011859 None:intergenic 45.0%
!!! GAGAATTTTGACTTCAGGCC+TGG - chr1_1:49011909-49011928 Msa0025650:CDS 45.0%
ATCAACCTTGACCTCACAAG+AGG - chr1_1:49011942-49011961 Msa0025650:CDS 45.0%
TGAATTTGCCACCTCTTGTG+AGG + chr1_1:49011956-49011975 None:intergenic 45.0%
TCACAAGAGGTGGCAAATTC+AGG - chr1_1:49011955-49011974 Msa0025650:CDS 45.0%
TACCAGAAGACTGCTGCATA+TGG - chr1_1:49011978-49011997 Msa0025650:CDS 45.0%
ACCAGAAGACTGCTGCATAT+GGG - chr1_1:49011979-49011998 Msa0025650:CDS 45.0%
! ACTGCTGCATATGGGCATTT+TGG - chr1_1:49011987-49012006 Msa0025650:CDS 45.0%
GTGACGATCCTGATTTCACA+TGG - chr1_1:49012012-49012031 Msa0025650:CDS 45.0%
ACAGTCTCCCATGTGAAATC+AGG + chr1_1:49012023-49012042 None:intergenic 45.0%
CCCAAGGCTTAATGGAGTTA+TGG - chr1_1:49012056-49012075 Msa0025650:CDS 45.0%
GAGCAGATATGTGCTCTACT+AGG - chr1_1:49012239-49012258 Msa0025650:intron 45.0%
GATATGTGCTCTACTAGGTG+TGG - chr1_1:49012244-49012263 Msa0025650:intron 45.0%
! TCAACACTTTCTTTTGGGCG+GGG - chr1_1:49010646-49010665 Msa0025650:three_prime_UTR 45.0%
AACCTGGTCACAGATCTTGT+CGG + chr1_1:49010944-49010963 None:intergenic 45.0%
GGAGCAAGATAAAGAGAGCA+AGG - chr1_1:49010990-49011009 Msa0025650:CDS 45.0%
! AGTTTTTGTACAGGTCTCGC+AGG + chr1_1:49011019-49011038 None:intergenic 45.0%
AATCACAACCAAGGCAAAGG+TGG - chr1_1:49011062-49011081 Msa0025650:CDS 45.0%
!! GTGACACTTGCAGGAGTATT+GGG - chr1_1:49011103-49011122 Msa0025650:CDS 45.0%
AGCAAGAAGCCTGAGGAAAT+TGG - chr1_1:49011228-49011247 Msa0025650:CDS 45.0%
GAAATTGGAGCTGGTGATCA+AGG - chr1_1:49011243-49011262 Msa0025650:CDS 45.0%
GGTGATCAAGGTCACATGTT+TGG - chr1_1:49011255-49011274 Msa0025650:CDS 45.0%
TAGTTCAGGTGTTTCGTCAG+TGG + chr1_1:49011286-49011305 None:intergenic 45.0%
TGTGTGAGTGGCATTAGTTC+AGG + chr1_1:49011300-49011319 None:intergenic 45.0%
! GAGCTTGGCACCAATTTTAG+TGG + chr1_1:49011331-49011350 None:intergenic 45.0%
ATAAGACATGCCCATGGGTT+AGG - chr1_1:49011367-49011386 Msa0025650:CDS 45.0%
GTAACTTGGGTCTTACCATC+AGG + chr1_1:49011393-49011412 None:intergenic 45.0%
!! CGTCGTGTTGAGTTGAAATG+AGG + chr1_1:49011470-49011489 None:intergenic 45.0%
TGAAGGGTTGAGATGGAAGA+TGG + chr1_1:49011580-49011599 None:intergenic 45.0%
ATCTTCCATCTCAACCCTTC+AGG - chr1_1:49011579-49011598 Msa0025650:CDS 45.0%
CCAATCACAAACCTACCTGA+AGG + chr1_1:49011597-49011616 None:intergenic 45.0%
CCTTCAGGTAGGTTTGTGAT+TGG - chr1_1:49011594-49011613 Msa0025650:CDS 45.0%
TCAGGTAGGTTTGTGATTGG+TGG - chr1_1:49011597-49011616 Msa0025650:CDS 45.0%
! TTTGTGATTGGTGGACCTCA+TGG - chr1_1:49011606-49011625 Msa0025650:CDS 45.0%
GGAGTGGTGCTTACATTGTT+AGG - chr1_1:49011733-49011752 Msa0025650:CDS 45.0%
!! GCAAAAAGTGTTGTCGCTTC+AGG - chr1_1:49011762-49011781 Msa0025650:CDS 45.0%
ACAAACACAGAAAGTGGCTC+TGG + chr1_1:49011834-49011853 None:intergenic 45.0%
! AGAGCCACTTTCTGTGTTTG+TGG - chr1_1:49011833-49011852 Msa0025650:CDS 45.0%
GTGTCCACAAACACAGAAAG+TGG + chr1_1:49011840-49011859 None:intergenic 45.0%
!!! GAGAATTTTGACTTCAGGCC+TGG - chr1_1:49011909-49011928 Msa0025650:CDS 45.0%
ATCAACCTTGACCTCACAAG+AGG - chr1_1:49011942-49011961 Msa0025650:CDS 45.0%
TGAATTTGCCACCTCTTGTG+AGG + chr1_1:49011956-49011975 None:intergenic 45.0%
TCACAAGAGGTGGCAAATTC+AGG - chr1_1:49011955-49011974 Msa0025650:CDS 45.0%
TACCAGAAGACTGCTGCATA+TGG - chr1_1:49011978-49011997 Msa0025650:CDS 45.0%
ACCAGAAGACTGCTGCATAT+GGG - chr1_1:49011979-49011998 Msa0025650:CDS 45.0%
! ACTGCTGCATATGGGCATTT+TGG - chr1_1:49011987-49012006 Msa0025650:CDS 45.0%
GTGACGATCCTGATTTCACA+TGG - chr1_1:49012012-49012031 Msa0025650:CDS 45.0%
ACAGTCTCCCATGTGAAATC+AGG + chr1_1:49012023-49012042 None:intergenic 45.0%
CCCAAGGCTTAATGGAGTTA+TGG - chr1_1:49012056-49012075 Msa0025650:CDS 45.0%
GAGCAGATATGTGCTCTACT+AGG - chr1_1:49012239-49012258 Msa0025650:intron 45.0%
GATATGTGCTCTACTAGGTG+TGG - chr1_1:49012244-49012263 Msa0025650:intron 45.0%
! CAACACTTTCTTTTGGGCGG+GGG - chr1_1:49010647-49010666 Msa0025650:three_prime_UTR 50.0%
! AACACTTTCTTTTGGGCGGG+GGG - chr1_1:49010648-49010667 Msa0025650:three_prime_UTR 50.0%
ACCTGGTCACAGATCTTGTC+GGG + chr1_1:49010943-49010962 None:intergenic 50.0%
! CAAGGATGGCATCTGAAACC+TGG + chr1_1:49010960-49010979 None:intergenic 50.0%
TGCCATCCTTGATGCATGCT+TGG - chr1_1:49010969-49010988 Msa0025650:CDS 50.0%
CTCCAAGCATGCATCAAGGA+TGG + chr1_1:49010974-49010993 None:intergenic 50.0%
CTTGCTCCAAGCATGCATCA+AGG + chr1_1:49010978-49010997 None:intergenic 50.0%
CTCATAGTCCACCTTTGCCT+TGG + chr1_1:49011073-49011092 None:intergenic 50.0%
! CGTGACACTTGCAGGAGTAT+TGG - chr1_1:49011102-49011121 Msa0025650:CDS 50.0%
GGGTTTGTGTCTGCTGATGT+TGG - chr1_1:49011123-49011142 Msa0025650:CDS 50.0%
CAGAGCCCTGATATTGCTCA+AGG - chr1_1:49011189-49011208 Msa0025650:CDS 50.0%
TCACTTGAGCAAGAAGCCTG+AGG - chr1_1:49011221-49011240 Msa0025650:CDS 50.0%
AAGCCTGAGGAAATTGGAGC+TGG - chr1_1:49011234-49011253 Msa0025650:CDS 50.0%
TCACCAGCTCCAATTTCCTC+AGG + chr1_1:49011240-49011259 None:intergenic 50.0%
TACCATCAGGCCTAACCCAT+GGG + chr1_1:49011380-49011399 None:intergenic 50.0%
TTACCATCAGGCCTAACCCA+TGG + chr1_1:49011381-49011400 None:intergenic 50.0%
GGATTGTGTGCACGCGAATA+GGG + chr1_1:49011449-49011468 None:intergenic 50.0%
AGGATTGTGTGCACGCGAAT+AGG + chr1_1:49011450-49011469 None:intergenic 50.0%
AGGTATTTAGCTGGGACGAC+AGG + chr1_1:49011546-49011565 None:intergenic 50.0%
!! GGAAGATGGTCTTGTCGTCA+AGG + chr1_1:49011566-49011585 None:intergenic 50.0%
TCCATCTCAACCCTTCAGGT+AGG - chr1_1:49011583-49011602 Msa0025650:CDS 50.0%
ACCTACCTGAAGGGTTGAGA+TGG + chr1_1:49011587-49011606 None:intergenic 50.0%
GGTTGGATCCTTTCCTGAGA+AGG + chr1_1:49011703-49011722 None:intergenic 50.0%
CTCAGGAAAGGATCCAACCA+AGG - chr1_1:49011704-49011723 Msa0025650:CDS 50.0%
AGGAAAGGATCCAACCAAGG+TGG - chr1_1:49011707-49011726 Msa0025650:CDS 50.0%
TGCTCGTCGTTGTATTGTGC+AGG - chr1_1:49011788-49011807 Msa0025650:CDS 50.0%
AACCTTGACCTCACAAGAGG+TGG - chr1_1:49011945-49011964 Msa0025650:CDS 50.0%
TGTGAAGATGCTCAAGCCCA+AGG - chr1_1:49012040-49012059 Msa0025650:CDS 50.0%
TGCTCAAGCCCAAGGCTTAA+TGG - chr1_1:49012048-49012067 Msa0025650:CDS 50.0%
! ACTGGAGGCTTTGGCACAAT+AGG - chr1_1:49012267-49012286 Msa0025650:CDS 50.0%
!! TTTCTCGCAACCGACTTGTG+TGG - chr1_1:49012384-49012403 Msa0025650:five_prime_UTR 50.0%
CATCAGAAACTACAGCCAGC+AGG + chr1_1:49012493-49012512 None:intergenic 50.0%
! CTGCTGGCTGTAGTTTCTGA+TGG - chr1_1:49012491-49012510 Msa0025650:five_prime_UTR 50.0%
! CAACACTTTCTTTTGGGCGG+GGG - chr1_1:49010647-49010666 Msa0025650:three_prime_UTR 50.0%
! AACACTTTCTTTTGGGCGGG+GGG - chr1_1:49010648-49010667 Msa0025650:three_prime_UTR 50.0%
ACCTGGTCACAGATCTTGTC+GGG + chr1_1:49010943-49010962 None:intergenic 50.0%
! CAAGGATGGCATCTGAAACC+TGG + chr1_1:49010960-49010979 None:intergenic 50.0%
TGCCATCCTTGATGCATGCT+TGG - chr1_1:49010969-49010988 Msa0025650:CDS 50.0%
CTCCAAGCATGCATCAAGGA+TGG + chr1_1:49010974-49010993 None:intergenic 50.0%
CTTGCTCCAAGCATGCATCA+AGG + chr1_1:49010978-49010997 None:intergenic 50.0%
CTCATAGTCCACCTTTGCCT+TGG + chr1_1:49011073-49011092 None:intergenic 50.0%
! CGTGACACTTGCAGGAGTAT+TGG - chr1_1:49011102-49011121 Msa0025650:CDS 50.0%
GGGTTTGTGTCTGCTGATGT+TGG - chr1_1:49011123-49011142 Msa0025650:CDS 50.0%
CAGAGCCCTGATATTGCTCA+AGG - chr1_1:49011189-49011208 Msa0025650:CDS 50.0%
TCACTTGAGCAAGAAGCCTG+AGG - chr1_1:49011221-49011240 Msa0025650:CDS 50.0%
AAGCCTGAGGAAATTGGAGC+TGG - chr1_1:49011234-49011253 Msa0025650:CDS 50.0%
TCACCAGCTCCAATTTCCTC+AGG + chr1_1:49011240-49011259 None:intergenic 50.0%
TACCATCAGGCCTAACCCAT+GGG + chr1_1:49011380-49011399 None:intergenic 50.0%
TTACCATCAGGCCTAACCCA+TGG + chr1_1:49011381-49011400 None:intergenic 50.0%
GGATTGTGTGCACGCGAATA+GGG + chr1_1:49011449-49011468 None:intergenic 50.0%
AGGATTGTGTGCACGCGAAT+AGG + chr1_1:49011450-49011469 None:intergenic 50.0%
AGGTATTTAGCTGGGACGAC+AGG + chr1_1:49011546-49011565 None:intergenic 50.0%
!! GGAAGATGGTCTTGTCGTCA+AGG + chr1_1:49011566-49011585 None:intergenic 50.0%
TCCATCTCAACCCTTCAGGT+AGG - chr1_1:49011583-49011602 Msa0025650:CDS 50.0%
ACCTACCTGAAGGGTTGAGA+TGG + chr1_1:49011587-49011606 None:intergenic 50.0%
GGTTGGATCCTTTCCTGAGA+AGG + chr1_1:49011703-49011722 None:intergenic 50.0%
CTCAGGAAAGGATCCAACCA+AGG - chr1_1:49011704-49011723 Msa0025650:CDS 50.0%
AGGAAAGGATCCAACCAAGG+TGG - chr1_1:49011707-49011726 Msa0025650:CDS 50.0%
TGCTCGTCGTTGTATTGTGC+AGG - chr1_1:49011788-49011807 Msa0025650:CDS 50.0%
AACCTTGACCTCACAAGAGG+TGG - chr1_1:49011945-49011964 Msa0025650:CDS 50.0%
TGTGAAGATGCTCAAGCCCA+AGG - chr1_1:49012040-49012059 Msa0025650:CDS 50.0%
TGCTCAAGCCCAAGGCTTAA+TGG - chr1_1:49012048-49012067 Msa0025650:CDS 50.0%
! ACTGGAGGCTTTGGCACAAT+AGG - chr1_1:49012267-49012286 Msa0025650:CDS 50.0%
!! TTTCTCGCAACCGACTTGTG+TGG - chr1_1:49012384-49012403 Msa0025650:five_prime_UTR 50.0%
CATCAGAAACTACAGCCAGC+AGG + chr1_1:49012493-49012512 None:intergenic 50.0%
! CTGCTGGCTGTAGTTTCTGA+TGG - chr1_1:49012491-49012510 Msa0025650:five_prime_UTR 50.0%
! TTTCTTTTGGGCGGGGGGTT+GGG - chr1_1:49010653-49010672 Msa0025650:three_prime_UTR 55.0%
CCTGGTCACAGATCTTGTCG+GGG + chr1_1:49010942-49010961 None:intergenic 55.0%
GTGGCAAGCACATGTGTGAG+TGG + chr1_1:49011312-49011331 None:intergenic 55.0%
GTGGACCTCATGGAGATGCT+GGG - chr1_1:49011616-49011635 Msa0025650:CDS 55.0%
ATGAGCACCCCAACCACCAT+AGG + chr1_1:49011670-49011689 None:intergenic 55.0%
! TATGGTGGTTGGGGTGCTCA+TGG - chr1_1:49011669-49011688 Msa0025650:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG - chr1_1:49011692-49011711 Msa0025650:CDS 55.0%
AGGATCCAACCAAGGTGGAC+AGG - chr1_1:49011712-49011731 Msa0025650:CDS 55.0%
TGCCACCTCTTGTGAGGTCA+AGG + chr1_1:49011950-49011969 None:intergenic 55.0%
GCCCATATGCAGCAGTCTTC+TGG + chr1_1:49011983-49012002 None:intergenic 55.0%
GTGCTCTACTAGGTGTGGAC+TGG - chr1_1:49012249-49012268 Msa0025650:intron 55.0%
!! CTCTACTAGGTGTGGACTGG+AGG - chr1_1:49012252-49012271 Msa0025650:intron 55.0%
!! TAGGTGTGGACTGGAGGCTT+TGG - chr1_1:49012258-49012277 Msa0025650:CDS 55.0%
!! TCGCAACCGACTTGTGTGGT+TGG - chr1_1:49012388-49012407 Msa0025650:five_prime_UTR 55.0%
! TTTCTTTTGGGCGGGGGGTT+GGG - chr1_1:49010653-49010672 Msa0025650:three_prime_UTR 55.0%
CCTGGTCACAGATCTTGTCG+GGG + chr1_1:49010942-49010961 None:intergenic 55.0%
GTGGCAAGCACATGTGTGAG+TGG + chr1_1:49011312-49011331 None:intergenic 55.0%
GTGGACCTCATGGAGATGCT+GGG - chr1_1:49011616-49011635 Msa0025650:CDS 55.0%
ATGAGCACCCCAACCACCAT+AGG + chr1_1:49011670-49011689 None:intergenic 55.0%
! TATGGTGGTTGGGGTGCTCA+TGG - chr1_1:49011669-49011688 Msa0025650:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG - chr1_1:49011692-49011711 Msa0025650:CDS 55.0%
AGGATCCAACCAAGGTGGAC+AGG - chr1_1:49011712-49011731 Msa0025650:CDS 55.0%
TGCCACCTCTTGTGAGGTCA+AGG + chr1_1:49011950-49011969 None:intergenic 55.0%
GCCCATATGCAGCAGTCTTC+TGG + chr1_1:49011983-49012002 None:intergenic 55.0%
GTGCTCTACTAGGTGTGGAC+TGG - chr1_1:49012249-49012268 Msa0025650:intron 55.0%
!! CTCTACTAGGTGTGGACTGG+AGG - chr1_1:49012252-49012271 Msa0025650:intron 55.0%
!! TAGGTGTGGACTGGAGGCTT+TGG - chr1_1:49012258-49012277 Msa0025650:CDS 55.0%
!! TCGCAACCGACTTGTGTGGT+TGG - chr1_1:49012388-49012407 Msa0025650:five_prime_UTR 55.0%
! CTTTCTTTTGGGCGGGGGGT+TGG - chr1_1:49010652-49010671 Msa0025650:three_prime_UTR 60.0%
! TTCTTTTGGGCGGGGGGTTG+GGG - chr1_1:49010654-49010673 Msa0025650:three_prime_UTR 60.0%
CCCCGACAAGATCTGTGACC+AGG - chr1_1:49010939-49010958 Msa0025650:CDS 60.0%
!! TGCCCATGGGTTAGGCCTGA+TGG - chr1_1:49011375-49011394 Msa0025650:CDS 60.0%
GTGCACGCGAATAGGGACCA+TGG + chr1_1:49011442-49011461 None:intergenic 60.0%
GGTGGACCTCATGGAGATGC+TGG - chr1_1:49011615-49011634 Msa0025650:CDS 60.0%
GTGAGCCCAGCATCTCCATG+AGG + chr1_1:49011624-49011643 None:intergenic 60.0%
CATGGAGATGCTGGGCTCAC+CGG - chr1_1:49011624-49011643 Msa0025650:CDS 60.0%
!! CATGGTGGAGGTGCCTTCTC+AGG - chr1_1:49011687-49011706 Msa0025650:CDS 60.0%
CCACTCCTGTCCACCTTGGT+TGG + chr1_1:49011720-49011739 None:intergenic 60.0%
CCAACCAAGGTGGACAGGAG+TGG - chr1_1:49011717-49011736 Msa0025650:CDS 60.0%
AGCACCACTCCTGTCCACCT+TGG + chr1_1:49011724-49011743 None:intergenic 60.0%
! CTTTCTTTTGGGCGGGGGGT+TGG - chr1_1:49010652-49010671 Msa0025650:three_prime_UTR 60.0%
! TTCTTTTGGGCGGGGGGTTG+GGG - chr1_1:49010654-49010673 Msa0025650:three_prime_UTR 60.0%
CCCCGACAAGATCTGTGACC+AGG - chr1_1:49010939-49010958 Msa0025650:CDS 60.0%
!! TGCCCATGGGTTAGGCCTGA+TGG - chr1_1:49011375-49011394 Msa0025650:CDS 60.0%
GTGCACGCGAATAGGGACCA+TGG + chr1_1:49011442-49011461 None:intergenic 60.0%
GGTGGACCTCATGGAGATGC+TGG - chr1_1:49011615-49011634 Msa0025650:CDS 60.0%
GTGAGCCCAGCATCTCCATG+AGG + chr1_1:49011624-49011643 None:intergenic 60.0%
CATGGAGATGCTGGGCTCAC+CGG - chr1_1:49011624-49011643 Msa0025650:CDS 60.0%
!! CATGGTGGAGGTGCCTTCTC+AGG - chr1_1:49011687-49011706 Msa0025650:CDS 60.0%
CCACTCCTGTCCACCTTGGT+TGG + chr1_1:49011720-49011739 None:intergenic 60.0%
CCAACCAAGGTGGACAGGAG+TGG - chr1_1:49011717-49011736 Msa0025650:CDS 60.0%
AGCACCACTCCTGTCCACCT+TGG + chr1_1:49011724-49011743 None:intergenic 60.0%
GAGATGCTGGGCTCACCGGA+AGG - chr1_1:49011628-49011647 Msa0025650:CDS 65.0%
! GGTGGTTGGGGTGCTCATGG+TGG - chr1_1:49011672-49011691 Msa0025650:CDS 65.0%
! GGTTGGGGTGCTCATGGTGG+AGG - chr1_1:49011675-49011694 Msa0025650:CDS 65.0%
GAGATGCTGGGCTCACCGGA+AGG - chr1_1:49011628-49011647 Msa0025650:CDS 65.0%
! GGTGGTTGGGGTGCTCATGG+TGG - chr1_1:49011672-49011691 Msa0025650:CDS 65.0%
! GGTTGGGGTGCTCATGGTGG+AGG - chr1_1:49011675-49011694 Msa0025650:CDS 65.0%
! TTTTGGGCGGGGGGTTGGGG+TGG - chr1_1:49010657-49010676 Msa0025650:three_prime_UTR 70.0%
! TTTTGGGCGGGGGGTTGGGG+TGG - chr1_1:49010657-49010676 Msa0025650:three_prime_UTR 70.0%
! TGGGCGGGGGGTTGGGGTGG+AGG - chr1_1:49010660-49010679 Msa0025650:three_prime_UTR 80.0%
! TGGGCGGGGGGTTGGGGTGG+AGG - chr1_1:49010660-49010679 Msa0025650:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 49010455 49012539 49010455 ID=Msa0025650;Name=Msa0025650
chr1_1 mRNA 49010455 49012539 49010455 ID=Msa0025650-mRNA-1;Parent=Msa0025650;Name=Msa0025650-mRNA-1;_AED=0.05;_eAED=0.05;_QI=231|1|1|1|0|0|3|374|408
chr1_1 exon 49010455 49010789 49010455 ID=Msa0025650-mRNA-1:exon:14127;Parent=Msa0025650-mRNA-1
chr1_1 exon 49010888 49012101 49010888 ID=Msa0025650-mRNA-1:exon:14126;Parent=Msa0025650-mRNA-1
chr1_1 exon 49012257 49012539 49012257 ID=Msa0025650-mRNA-1:exon:14125;Parent=Msa0025650-mRNA-1
chr1_1 five_prime_UTR 49012309 49012539 49012309 ID=Msa0025650-mRNA-1:five_prime_utr;Parent=Msa0025650-mRNA-1
chr1_1 CDS 49012257 49012308 49012257 ID=Msa0025650-mRNA-1:cds;Parent=Msa0025650-mRNA-1
chr1_1 CDS 49010927 49012101 49010927 ID=Msa0025650-mRNA-1:cds;Parent=Msa0025650-mRNA-1
chr1_1 three_prime_UTR 49010888 49010926 49010888 ID=Msa0025650-mRNA-1:three_prime_utr;Parent=Msa0025650-mRNA-1
chr1_1 three_prime_UTR 49010455 49010789 49010455 ID=Msa0025650-mRNA-1:three_prime_utr;Parent=Msa0025650-mRNA-1
Gene Sequence

>Msa0025650

ATGTATGATAGCAGAGTAAATTTTGTGTGTGAATTATTTCCTTTGCATAGTGATATGGATACCTTCCTATTCACCTCAGAATCTGTAAACGAAGGTCACCCCGACAAGATCTGTGACCAGGTTTCAGATGCCATCCTTGATGCATGCTTGGAGCAAGATAAAGAGAGCAAGGTTGCCTGCGAGACCTGTACAAAAACTAACATGGTTATGGTCTTTGGTGAAATCACAACCAAGGCAAAGGTGGACTATGAGAAAATAGTTCGTGACACTTGCAGGAGTATTGGGTTTGTGTCTGCTGATGTTGGTCTTGATGCTGACAAATGCAATGTTCTCGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAAGGAGTTCACGGTCACTTGAGCAAGAAGCCTGAGGAAATTGGAGCTGGTGATCAAGGTCACATGTTTGGCTATGCCACTGACGAAACACCTGAACTAATGCCACTCACACATGTGCTTGCCACTAAAATTGGTGCCAAGCTCACTGAAGTTAGAAAGAATAAGACATGCCCATGGGTTAGGCCTGATGGTAAGACCCAAGTTACCGTTGAATACAAGAATGATAATGGAGCCATGGTCCCTATTCGCGTGCACACAATCCTCATTTCAACTCAACACGACGAAACTGTCACAAATGAAAAGATTGCTCAAGATTTGAAAGAGCATGTTATTAAACCTGTCGTCCCAGCTAAATACCTTGACGACAAGACCATCTTCCATCTCAACCCTTCAGGTAGGTTTGTGATTGGTGGACCTCATGGAGATGCTGGGCTCACCGGAAGGAAGATCATTATTGATACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGAAAGGATCCAACCAAGGTGGACAGGAGTGGTGCTTACATTGTTAGGCAAGCTGCAAAAAGTGTTGTCGCTTCAGGGCTTGCTCGTCGTTGTATTGTGCAGGTTTCTTATGCAATTGGAGTGCCAGAGCCACTTTCTGTGTTTGTGGACACTTACAAAACTGGAAAGATTCCAGATAAGGATATTTTGGTTCTGATTAAGGAGAATTTTGACTTCAGGCCTGGAATGATTGCTATCAACCTTGACCTCACAAGAGGTGGCAAATTCAGGTACCAGAAGACTGCTGCATATGGGCATTTTGGACGTGACGATCCTGATTTCACATGGGAGACTGTGAAGATGCTCAAGCCCAAGGCTTAA
Protein sequence

>Msa0025650

MYDSRVNFVCELFPLHSDMDTFLFTSESVNEGHPDKICDQVSDAILDACLEQDKESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSADVGLDADKCNVLVNIEQQSPDIAQGVHGHLSKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKIGAKLTEVRKNKTCPWVRPDGKTQVTVEYKNDNGAMVPIRVHTILISTQHDETVTNEKIAQDLKEHVIKPVVPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKENFDFRPGMIAINLDLTRGGKFRYQKTAAYGHFGRDDPDFTWETVKMLKPKA*