AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0121410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121410 MtrunA17_Chr1g0180491 100.000 390 0 0 19 408 1 390 0.0 805
Msa0121410 MtrunA17_Chr7g0264651 94.103 390 23 0 19 408 1 390 0.0 741
Msa0121410 MtrunA17_Chr4g0069201 88.601 386 44 0 20 405 4 389 0.0 696
Msa0121410 MtrunA17_Chr7g0270531 86.788 386 51 0 20 405 3 388 0.0 692
Msa0121410 MtrunA17_Chr2g0302931 88.083 386 46 0 20 405 4 389 0.0 691
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121410 AT2G36880.2 92.564 390 29 0 19 408 1 390 0.0 731
Msa0121410 AT2G36880.1 92.564 390 29 0 19 408 1 390 0.0 731
Msa0121410 AT3G17390.1 88.114 387 46 0 19 405 1 387 0.0 695
Msa0121410 AT4G01850.2 87.597 387 48 0 19 405 1 387 0.0 692
Msa0121410 AT4G01850.1 87.597 387 48 0 19 405 1 387 0.0 692
Msa0121410 AT1G02500.1 87.597 387 48 0 19 405 1 387 0.0 687
Msa0121410 AT1G02500.2 87.597 387 48 0 19 405 1 387 0.0 687

Find 141 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCCAGATAAGGATATTT+TGG 0.191529 1_3:-47229285 Msa0121410:CDS
TTAAATTTCATTACTGTTAC+TGG 0.198871 1_3:-47228851 Msa0121410:three_prime_UTR
ACTGCTGCTTACGGGCATTT+TGG 0.206540 1_3:-47229173 Msa0121410:CDS
AGCAAGAAGCCTGAGGAAAT+TGG 0.257775 1_3:-47229932 Msa0121410:CDS
CAAATATTACAGAATTCATT+AGG 0.259530 1_3:+47230670 None:intergenic
ACTAACATGGTTATGGTCTT+TGG 0.278992 1_3:-47230124 Msa0121410:CDS
TAGCATTCAACACTTTCTTT+TGG 0.295521 1_3:-47230520 Msa0121410:five_prime_UTR
TGAACTCCTTGAGCAATATC+AGG 0.302469 1_3:+47229965 None:intergenic
GCCCGTAAGCAGCAGTCTTC+TGG 0.322457 1_3:+47229180 None:intergenic
TCACAAGAGGTGGCAAATTC+AGG 0.332737 1_3:-47229205 Msa0121410:CDS
AAATAGTTCGGGACACTTGC+AGG 0.334020 1_3:-47230066 Msa0121410:CDS
AGAACCAAAATATCCTTATC+TGG 0.337009 1_3:+47229281 None:intergenic
AGGATTGTGTGCACGCGAAT+AGG 0.355191 1_3:+47229713 None:intergenic
TATTGATACCTATGGTGGTT+GGG 0.358518 1_3:-47229501 Msa0121410:CDS
TTTGTGGACACTTACAAAAC+TGG 0.364762 1_3:-47229311 Msa0121410:CDS
CTCATAGTCCACCTTTGCCT+TGG 0.368509 1_3:+47230090 None:intergenic
GGAGTGGTGCTTACATTGTT+AGG 0.368655 1_3:-47229427 Msa0121410:CDS
GGGACACTTGCAGGAGTATT+GGG 0.371873 1_3:-47230057 Msa0121410:CDS
GTTGAATACAAGAATGATAA+TGG 0.375620 1_3:-47229746 Msa0121410:CDS
ATCAATAATGATCTTCCTTC+CGG 0.379520 1_3:+47229517 None:intergenic
CATGTGCTTGCCACTAAAAT+TGG 0.379944 1_3:-47229842 Msa0121410:CDS
CGGGACACTTGCAGGAGTAT+TGG 0.380004 1_3:-47230058 Msa0121410:CDS
CATGGTGGAGGTGCCTTCTC+AGG 0.384431 1_3:-47229473 Msa0121410:CDS
TAGGTGTGGACTGGAGGCTT+TGG 0.386100 1_3:-47228927 Msa0121410:three_prime_UTR
TTACAGATTCTGAGGTGAAT+AGG 0.390519 1_3:+47230254 None:intergenic
AAATATTACAGAATTCATTA+GGG 0.398110 1_3:+47230671 None:intergenic
TGCTCGTCGTTGTATTGTGC+AGG 0.400285 1_3:-47229372 Msa0121410:CDS
GTGCAGGTTTCTTATGCAAT+TGG 0.405905 1_3:-47229356 Msa0121410:CDS
ACCAGAAGACTGCTGCTTAC+GGG 0.407668 1_3:-47229181 Msa0121410:CDS
CTGCTGGCTGTAGTTTCTGA+TGG 0.409216 1_3:-47228694 Msa0121410:three_prime_UTR
TCTTGTATTCAACGGTAACT+TGG 0.410805 1_3:+47229756 None:intergenic
AGAGCCACTTTCTGTGTTTG+TGG 0.412076 1_3:-47229327 Msa0121410:CDS
TCAGGTAGGTTTGTGATTGG+TGG 0.413640 1_3:-47229563 Msa0121410:CDS
GGTTGGGGTGCTCATGGTGG+AGG 0.416114 1_3:-47229485 Msa0121410:CDS
GGATTGTGTGCACGCGAATA+GGG 0.416704 1_3:+47229714 None:intergenic
ACCTGGTCACAGATCTTGTC+GGG 0.417397 1_3:+47230220 None:intergenic
TTGTCGTCAAGGTATTTAGC+TGG 0.418579 1_3:+47229608 None:intergenic
CCTTCAGGTAGGTTTGTGAT+TGG 0.422961 1_3:-47229566 Msa0121410:CDS
ACTGGAGGCTTTGGCACAAT+AGG 0.424191 1_3:-47228918 Msa0121410:three_prime_UTR
CCCAAGGCTTGAGGGAGTTA+TGG 0.427374 1_3:-47229104 Msa0121410:exon
ATAAGACATGCCCATGGGTT+AGG 0.433400 1_3:-47229793 Msa0121410:CDS
GGTGATCAAGGTCACATGTT+TGG 0.433876 1_3:-47229905 Msa0121410:CDS
ACCATAACTCCCTCAAGCCT+TGG 0.434421 1_3:+47229103 None:intergenic
TATGGTGGTTGGGGTGCTCA+TGG 0.437298 1_3:-47229491 Msa0121410:CDS
CTTTCTAACTTCAGTGAGCT+TGG 0.438150 1_3:+47229817 None:intergenic
GGTTGGATCCTTTCCTGAGA+AGG 0.441186 1_3:+47229460 None:intergenic
TGCTCAAGCCCAAGGCTTGA+GGG 0.445480 1_3:-47229112 Msa0121410:exon
ATCTTCCATCTCAACCCTTC+AGG 0.447635 1_3:-47229581 Msa0121410:CDS
TTTCAGCTTAGATGAGAAAT+GGG 0.447738 1_3:-47228968 Msa0121410:three_prime_UTR
ACAGTCTCCCATGTAAAATC+AGG 0.452392 1_3:+47229140 None:intergenic
CGTCGTGTTGAGTTGAAATG+AGG 0.453932 1_3:+47229693 None:intergenic
TCACCAGCTCCAATTTCCTC+AGG 0.463353 1_3:+47229923 None:intergenic
TGTGTGAGTGGCATTAGTTC+AGG 0.465165 1_3:+47229863 None:intergenic
CCACTCCTGTCCACCTTGGT+TGG 0.465451 1_3:+47229443 None:intergenic
TACCAGAAGACTGCTGCTTA+CGG 0.467085 1_3:-47229182 Msa0121410:CDS
CATGGAGATGCGGGGCTCAC+CGG 0.468853 1_3:-47229536 Msa0121410:CDS
GGACTATGAGAAAATAGTTC+GGG 0.469416 1_3:-47230077 Msa0121410:CDS
CCATAACTCCCTCAAGCCTT+GGG 0.475898 1_3:+47229104 None:intergenic
GGTGGACCTCATGGAGATGC+GGG 0.478920 1_3:-47229545 Msa0121410:CDS
TGGACTATGAGAAAATAGTT+CGG 0.480347 1_3:-47230078 Msa0121410:CDS
GAAATTGGAGCTGGTGATCA+AGG 0.483468 1_3:-47229917 Msa0121410:CDS
TGCCACCTCTTGTGAGGTCA+AGG 0.490427 1_3:+47229213 None:intergenic
AGGATCCAACCAAGGTGGAC+AGG 0.494928 1_3:-47229448 Msa0121410:CDS
GAATTATTTCCTTTGCATAG+TGG 0.495266 1_3:-47230444 Msa0121410:intron
AGGTTGATAGCAATCATTCC+AGG 0.495973 1_3:+47229233 None:intergenic
TGCCATCCTTGATGCATGCT+TGG 0.499134 1_3:-47230191 Msa0121410:CDS
AGGTATTTAGCTGGGACGAC+AGG 0.499951 1_3:+47229617 None:intergenic
AACTGGAAAGATTCCAGATA+AGG 0.500009 1_3:-47229294 Msa0121410:CDS
GGGTTTGTGTCTGCTGATGT+TGG 0.504850 1_3:-47230037 Msa0121410:CDS
AGTAAAATCAAAATCAAAAG+TGG 0.506240 1_3:+47228877 None:intergenic
TGCCCATGGGTTAGGCCTGA+TGG 0.510007 1_3:-47229785 Msa0121410:CDS
CAAGGATGGCATCTGAAACC+TGG 0.510900 1_3:+47230203 None:intergenic
TTATTGATACCTATGGTGGT+TGG 0.512065 1_3:-47229502 Msa0121410:CDS
AAGATCATTATTGATACCTA+TGG 0.514480 1_3:-47229509 Msa0121410:CDS
TCAAAAGTGGTAGCTAATGT+TGG 0.517595 1_3:+47228890 None:intergenic
GTGCTCTCCTAGGTGTGGAC+TGG 0.521156 1_3:-47228936 Msa0121410:three_prime_UTR
GTGTCCACAAACACAGAAAG+TGG 0.522772 1_3:+47229323 None:intergenic
CTCTCCTAGGTGTGGACTGG+AGG 0.524081 1_3:-47228933 Msa0121410:three_prime_UTR
CTTGTATTCAACGGTAACTT+GGG 0.524167 1_3:+47229757 None:intergenic
GTAACTTGGGTCTTACCATC+AGG 0.526446 1_3:+47229770 None:intergenic
ATTGATACCTATGGTGGTTG+GGG 0.527612 1_3:-47229500 Msa0121410:CDS
ATGCTCAAGCCCAAGGCTTG+AGG 0.527948 1_3:-47229113 Msa0121410:exon
ATTATCATTCTTGTATTCAA+CGG 0.531052 1_3:+47229748 None:intergenic
GATATTGCTCAAGGAGTTCA+CGG 0.536055 1_3:-47229962 Msa0121410:CDS
CCCCGACAAGATCTGTGACC+AGG 0.538168 1_3:-47230221 Msa0121410:CDS
GAGCAGATATGTGCTCTCCT+AGG 0.540940 1_3:-47228946 Msa0121410:three_prime_UTR
TAGTTCAGGTGTTTCGTCAG+TGG 0.542460 1_3:+47229877 None:intergenic
TTTGTGATTGGTGGACCTCA+TGG 0.544583 1_3:-47229554 Msa0121410:CDS
TACCATCAGGCCTAACCCAT+GGG 0.547526 1_3:+47229783 None:intergenic
TGTCGTCAAGGTATTTAGCT+GGG 0.547725 1_3:+47229609 None:intergenic
TCGCAACCGACTTGTGTGGT+TGG 0.549227 1_3:-47228797 Msa0121410:three_prime_UTR
ACCTACCTGAAGGGTTGAGA+TGG 0.549506 1_3:+47229576 None:intergenic
TGGTGGACCTCATGGAGATG+CGG 0.558868 1_3:-47229546 Msa0121410:CDS
CATCAGAAACTACAGCCAGC+AGG 0.559940 1_3:+47228695 None:intergenic
ACAAACACAGAAAGTGGCTC+TGG 0.562649 1_3:+47229329 None:intergenic
GGTGGTTGGGGTGCTCATGG+TGG 0.563645 1_3:-47229488 Msa0121410:CDS
TGAAGGGTTGAGATGGAAGA+TGG 0.563688 1_3:+47229583 None:intergenic
AACCTGGTCACAGATCTTGT+CGG 0.563707 1_3:+47230219 None:intergenic
AAGCCTGAGGAAATTGGAGC+TGG 0.569064 1_3:-47229926 Msa0121410:CDS
AGCACCACTCCTGTCCACCT+TGG 0.571010 1_3:+47229439 None:intergenic
CTCCAAGCATGCATCAAGGA+TGG 0.575330 1_3:+47230189 None:intergenic
ATCATTATTGATACCTATGG+TGG 0.575435 1_3:-47229506 Msa0121410:CDS
ATGAGCACCCCAACCACCAT+AGG 0.575628 1_3:+47229493 None:intergenic
CAAGAATGATAATGGAGCCA+TGG 0.577331 1_3:-47229738 Msa0121410:CDS
GGAAGATGGTCTTGTCGTCA+AGG 0.577435 1_3:+47229597 None:intergenic
TTACCATCAGGCCTAACCCA+TGG 0.578836 1_3:+47229782 None:intergenic
TGTGAAGATGCTCAAGCCCA+AGG 0.581845 1_3:-47229120 Msa0121410:CDS
GAGATGCGGGGCTCACCGGA+AGG 0.589190 1_3:-47229532 Msa0121410:CDS
ACCTTCGTTTACAGATTCTG+AGG 0.589403 1_3:+47230246 None:intergenic
TGAAATCACAACCAAGGCAA+AGG 0.590046 1_3:-47230101 Msa0121410:CDS
CCAATCACAAACCTACCTGA+AGG 0.592190 1_3:+47229566 None:intergenic
AACCTTGACCTCACAAGAGG+TGG 0.593643 1_3:-47229215 Msa0121410:CDS
GGAGCAAGATAAAGAGAGCA+AGG 0.594380 1_3:-47230170 Msa0121410:CDS
AATCACAACCAAGGCAAAGG+TGG 0.598400 1_3:-47230098 Msa0121410:CDS
TGAATTTGCCACCTCTTGTG+AGG 0.598537 1_3:+47229207 None:intergenic
CAGAGCCCTGATATTGCTCA+AGG 0.602611 1_3:-47229971 Msa0121410:CDS
CTTGCTCCAAGCATGCATCA+AGG 0.602878 1_3:+47230185 None:intergenic
TTTCTCGCAACCGACTTGTG+TGG 0.606583 1_3:-47228801 Msa0121410:three_prime_UTR
GAACTCCTTGAGCAATATCA+GGG 0.613163 1_3:+47229966 None:intergenic
GAAAGAATAAGACATGCCCA+TGG 0.616428 1_3:-47229799 Msa0121410:CDS
TGGAGGTGCCTTCTCAGGAA+AGG 0.621106 1_3:-47229468 Msa0121410:CDS
CAATCACAAACCTACCTGAA+GGG 0.630070 1_3:+47229567 None:intergenic
ATCAACCTTGACCTCACAAG+AGG 0.632107 1_3:-47229218 Msa0121410:CDS
GATATGTGCTCTCCTAGGTG+TGG 0.634071 1_3:-47228941 Msa0121410:three_prime_UTR
AGATTCTGAGGTGAATAGGA+AGG 0.635764 1_3:+47230258 None:intergenic
TTTACACCAACCACACAAGT+CGG 0.635772 1_3:+47228791 None:intergenic
TCCATCTCAACCCTTCAGGT+AGG 0.636963 1_3:-47229577 Msa0121410:CDS
AAAGAATAAGACATGCCCAT+GGG 0.640830 1_3:-47229798 Msa0121410:CDS
CCAACCAAGGTGGACAGGAG+TGG 0.650759 1_3:-47229443 Msa0121410:CDS
ACCTCAGAATCTGTAAACGA+AGG 0.651225 1_3:-47230247 Msa0121410:CDS
AAAGCCTCCAGTCCACACCT+AGG 0.665696 1_3:+47228929 None:intergenic
GTGGACCTCATGGAGATGCG+GGG 0.667986 1_3:-47229544 Msa0121410:CDS
GTGGCAAGCACATGTGTGAG+TGG 0.669118 1_3:+47229851 None:intergenic
CTCAGGAAAGGATCCAACCA+AGG 0.675495 1_3:-47229456 Msa0121410:CDS
CTTTGGTGAAATCACAACCA+AGG 0.678587 1_3:-47230107 Msa0121410:CDS
CTTACATTACCACTATGCAA+AGG 0.681295 1_3:+47230435 None:intergenic
TCACTTGAGCAAGAAGCCTG+AGG 0.682617 1_3:-47229939 Msa0121410:CDS
GTGCACGCGAATAGGGACCA+TGG 0.688328 1_3:+47229721 None:intergenic
GTGAGCCCCGCATCTCCATG+AGG 0.689929 1_3:+47229539 None:intergenic
AGGAAAGGATCCAACCAAGG+TGG 0.705983 1_3:-47229453 Msa0121410:CDS
CCTGGTCACAGATCTTGTCG+GGG 0.713673 1_3:+47230221 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTACAGAATTCATTA+GGG + chr1_3:47228702-47228721 None:intergenic 15.0%
!!! CAATAATATTTTGTTTGTTT+TGG - chr1_3:47228773-47228792 Msa0121410:three_prime_UTR 15.0%
!! TTTCAAATAATGTATATACT+CGG + chr1_3:47230369-47230388 None:intergenic 15.0%
!! AAATATTACAGAATTCATTA+GGG + chr1_3:47228702-47228721 None:intergenic 15.0%
!!! CAATAATATTTTGTTTGTTT+TGG - chr1_3:47228773-47228792 Msa0121410:three_prime_UTR 15.0%
!! TTTCAAATAATGTATATACT+CGG + chr1_3:47230369-47230388 None:intergenic 15.0%
!! CAAATATTACAGAATTCATT+AGG + chr1_3:47228703-47228722 None:intergenic 20.0%
!! ACATCTAATATATATACTCT+TGG - chr1_3:47229055-47229074 Msa0121410:intron 20.0%
!!! TCTTGGTCTTATTATTTTTT+TGG - chr1_3:47229072-47229091 Msa0121410:intron 20.0%
!! ATTATCATTCTTGTATTCAA+CGG + chr1_3:47229625-47229644 None:intergenic 20.0%
!! AGTAAAATCAAAATCAAAAG+TGG + chr1_3:47230496-47230515 None:intergenic 20.0%
!! TTAAATTTCATTACTGTTAC+TGG - chr1_3:47230519-47230538 Msa0121410:five_prime_UTR 20.0%
!! AAAACTGCAACAAAAAAATA+GGG - chr1_3:47230699-47230718 Msa0121410:five_prime_UTR 20.0%
!! CAAATATTACAGAATTCATT+AGG + chr1_3:47228703-47228722 None:intergenic 20.0%
!! ACATCTAATATATATACTCT+TGG - chr1_3:47229055-47229074 Msa0121410:intron 20.0%
!!! TCTTGGTCTTATTATTTTTT+TGG - chr1_3:47229072-47229091 Msa0121410:intron 20.0%
!! ATTATCATTCTTGTATTCAA+CGG + chr1_3:47229625-47229644 None:intergenic 20.0%
!! AGTAAAATCAAAATCAAAAG+TGG + chr1_3:47230496-47230515 None:intergenic 20.0%
!! TTAAATTTCATTACTGTTAC+TGG - chr1_3:47230519-47230538 Msa0121410:five_prime_UTR 20.0%
!! AAAACTGCAACAAAAAAATA+GGG - chr1_3:47230699-47230718 Msa0121410:five_prime_UTR 20.0%
!!! TGTTTTGGTAAACAATAAGT+TGG - chr1_3:47228788-47228807 Msa0121410:three_prime_UTR 25.0%
!!! TTTTTTTGGAACATCAGATA+TGG - chr1_3:47229086-47229105 Msa0121410:three_prime_UTR 25.0%
! TACAAAAACTAACATGGTTA+TGG - chr1_3:47229239-47229258 Msa0121410:CDS 25.0%
! GTTGAATACAAGAATGATAA+TGG - chr1_3:47229624-47229643 Msa0121410:CDS 25.0%
! AAGATCATTATTGATACCTA+TGG - chr1_3:47229861-47229880 Msa0121410:CDS 25.0%
! GAAAACTGCAACAAAAAAAT+AGG - chr1_3:47230698-47230717 Msa0121410:five_prime_UTR 25.0%
!!! TGTTTTGGTAAACAATAAGT+TGG - chr1_3:47228788-47228807 Msa0121410:three_prime_UTR 25.0%
!!! TTTTTTTGGAACATCAGATA+TGG - chr1_3:47229086-47229105 Msa0121410:three_prime_UTR 25.0%
! TACAAAAACTAACATGGTTA+TGG - chr1_3:47229239-47229258 Msa0121410:CDS 25.0%
! GTTGAATACAAGAATGATAA+TGG - chr1_3:47229624-47229643 Msa0121410:CDS 25.0%
! AAGATCATTATTGATACCTA+TGG - chr1_3:47229861-47229880 Msa0121410:CDS 25.0%
! GAAAACTGCAACAAAAAAAT+AGG - chr1_3:47230698-47230717 Msa0121410:five_prime_UTR 25.0%
!! CTTTTTAAGCAACAGATCAA+AGG - chr1_3:47228821-47228840 Msa0121410:three_prime_UTR 30.0%
! TAGCATTCAACACTTTCTTT+TGG - chr1_3:47228850-47228869 Msa0121410:three_prime_UTR 30.0%
! AGCATTCAACACTTTCTTTT+GGG - chr1_3:47228851-47228870 Msa0121410:three_prime_UTR 30.0%
GAATTATTTCCTTTGCATAG+TGG - chr1_3:47228926-47228945 Msa0121410:three_prime_UTR 30.0%
! CAATTGACTACAGATTTTGA+AGG + chr1_3:47229016-47229035 None:intergenic 30.0%
!!! AACCATGTTAGTTTTTGTAC+AGG + chr1_3:47229238-47229257 None:intergenic 30.0%
TGGACTATGAGAAAATAGTT+CGG - chr1_3:47229292-47229311 Msa0121410:CDS 30.0%
ATCAATAATGATCTTCCTTC+CGG + chr1_3:47229856-47229875 None:intergenic 30.0%
ATCATTATTGATACCTATGG+TGG - chr1_3:47229864-47229883 Msa0121410:CDS 30.0%
! GATTCCAGATAAGGATATTT+TGG - chr1_3:47230085-47230104 Msa0121410:CDS 30.0%
AGAACCAAAATATCCTTATC+TGG + chr1_3:47230092-47230111 None:intergenic 30.0%
!!! GGATATTTTGGTTCTGATTA+AGG - chr1_3:47230097-47230116 Msa0121410:CDS 30.0%
!!! TTAAGGAGAATTTTGACTTC+AGG - chr1_3:47230114-47230133 Msa0121410:CDS 30.0%
GTAATCATCTTTCTGATTCT+GGG - chr1_3:47230317-47230336 Msa0121410:intron 30.0%
! TTTTCAGCTTAGATGAGAAA+TGG - chr1_3:47230401-47230420 Msa0121410:intron 30.0%
TTTCAGCTTAGATGAGAAAT+GGG - chr1_3:47230402-47230421 Msa0121410:intron 30.0%
! CATATAGAAAATTTTCCTGC+TGG - chr1_3:47230660-47230679 Msa0121410:five_prime_UTR 30.0%
!! CTTTTTAAGCAACAGATCAA+AGG - chr1_3:47228821-47228840 Msa0121410:three_prime_UTR 30.0%
! TAGCATTCAACACTTTCTTT+TGG - chr1_3:47228850-47228869 Msa0121410:three_prime_UTR 30.0%
! AGCATTCAACACTTTCTTTT+GGG - chr1_3:47228851-47228870 Msa0121410:three_prime_UTR 30.0%
GAATTATTTCCTTTGCATAG+TGG - chr1_3:47228926-47228945 Msa0121410:three_prime_UTR 30.0%
! CAATTGACTACAGATTTTGA+AGG + chr1_3:47229016-47229035 None:intergenic 30.0%
!!! AACCATGTTAGTTTTTGTAC+AGG + chr1_3:47229238-47229257 None:intergenic 30.0%
TGGACTATGAGAAAATAGTT+CGG - chr1_3:47229292-47229311 Msa0121410:CDS 30.0%
ATCAATAATGATCTTCCTTC+CGG + chr1_3:47229856-47229875 None:intergenic 30.0%
ATCATTATTGATACCTATGG+TGG - chr1_3:47229864-47229883 Msa0121410:CDS 30.0%
! GATTCCAGATAAGGATATTT+TGG - chr1_3:47230085-47230104 Msa0121410:CDS 30.0%
AGAACCAAAATATCCTTATC+TGG + chr1_3:47230092-47230111 None:intergenic 30.0%
!!! GGATATTTTGGTTCTGATTA+AGG - chr1_3:47230097-47230116 Msa0121410:CDS 30.0%
!!! TTAAGGAGAATTTTGACTTC+AGG - chr1_3:47230114-47230133 Msa0121410:CDS 30.0%
GTAATCATCTTTCTGATTCT+GGG - chr1_3:47230317-47230336 Msa0121410:intron 30.0%
! TTTTCAGCTTAGATGAGAAA+TGG - chr1_3:47230401-47230420 Msa0121410:intron 30.0%
TTTCAGCTTAGATGAGAAAT+GGG - chr1_3:47230402-47230421 Msa0121410:intron 30.0%
! CATATAGAAAATTTTCCTGC+TGG - chr1_3:47230660-47230679 Msa0121410:five_prime_UTR 30.0%
! ATTCAACACTTTCTTTTGGG+CGG - chr1_3:47228854-47228873 Msa0121410:three_prime_UTR 35.0%
CTTACATTACCACTATGCAA+AGG + chr1_3:47228938-47228957 None:intergenic 35.0%
!! TTACAGATTCTGAGGTGAAT+AGG + chr1_3:47229119-47229138 None:intergenic 35.0%
GACCTGTACAAAAACTAACA+TGG - chr1_3:47229233-47229252 Msa0121410:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG - chr1_3:47229246-47229265 Msa0121410:CDS 35.0%
GGACTATGAGAAAATAGTTC+GGG - chr1_3:47229293-47229312 Msa0121410:CDS 35.0%
AAAGAATAAGACATGCCCAT+GGG - chr1_3:47229572-47229591 Msa0121410:CDS 35.0%
CTTGTATTCAACGGTAACTT+GGG + chr1_3:47229616-47229635 None:intergenic 35.0%
TCTTGTATTCAACGGTAACT+TGG + chr1_3:47229617-47229636 None:intergenic 35.0%
TTATTGATACCTATGGTGGT+TGG - chr1_3:47229868-47229887 Msa0121410:CDS 35.0%
TATTGATACCTATGGTGGTT+GGG - chr1_3:47229869-47229888 Msa0121410:CDS 35.0%
TTTGTGGACACTTACAAAAC+TGG - chr1_3:47230059-47230078 Msa0121410:CDS 35.0%
AACTGGAAAGATTCCAGATA+AGG - chr1_3:47230076-47230095 Msa0121410:CDS 35.0%
! TGACGATCCTGATTTTACAT+GGG - chr1_3:47230223-47230242 Msa0121410:CDS 35.0%
! AGTTATGGTATTTTCAGAGG+TGG - chr1_3:47230281-47230300 Msa0121410:intron 35.0%
!! CAGAGGTGGTTATTTTATCA+TGG - chr1_3:47230295-47230314 Msa0121410:intron 35.0%
GGTAATCATCTTTCTGATTC+TGG - chr1_3:47230316-47230335 Msa0121410:intron 35.0%
TCAAAAGTGGTAGCTAATGT+TGG + chr1_3:47230483-47230502 None:intergenic 35.0%
! ATTCAACACTTTCTTTTGGG+CGG - chr1_3:47228854-47228873 Msa0121410:three_prime_UTR 35.0%
CTTACATTACCACTATGCAA+AGG + chr1_3:47228938-47228957 None:intergenic 35.0%
!! TTACAGATTCTGAGGTGAAT+AGG + chr1_3:47229119-47229138 None:intergenic 35.0%
GACCTGTACAAAAACTAACA+TGG - chr1_3:47229233-47229252 Msa0121410:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG - chr1_3:47229246-47229265 Msa0121410:CDS 35.0%
GGACTATGAGAAAATAGTTC+GGG - chr1_3:47229293-47229312 Msa0121410:CDS 35.0%
AAAGAATAAGACATGCCCAT+GGG - chr1_3:47229572-47229591 Msa0121410:CDS 35.0%
CTTGTATTCAACGGTAACTT+GGG + chr1_3:47229616-47229635 None:intergenic 35.0%
TCTTGTATTCAACGGTAACT+TGG + chr1_3:47229617-47229636 None:intergenic 35.0%
TTATTGATACCTATGGTGGT+TGG - chr1_3:47229868-47229887 Msa0121410:CDS 35.0%
TATTGATACCTATGGTGGTT+GGG - chr1_3:47229869-47229888 Msa0121410:CDS 35.0%
TTTGTGGACACTTACAAAAC+TGG - chr1_3:47230059-47230078 Msa0121410:CDS 35.0%
AACTGGAAAGATTCCAGATA+AGG - chr1_3:47230076-47230095 Msa0121410:CDS 35.0%
! TGACGATCCTGATTTTACAT+GGG - chr1_3:47230223-47230242 Msa0121410:CDS 35.0%
! AGTTATGGTATTTTCAGAGG+TGG - chr1_3:47230281-47230300 Msa0121410:intron 35.0%
!! CAGAGGTGGTTATTTTATCA+TGG - chr1_3:47230295-47230314 Msa0121410:intron 35.0%
GGTAATCATCTTTCTGATTC+TGG - chr1_3:47230316-47230335 Msa0121410:intron 35.0%
TCAAAAGTGGTAGCTAATGT+TGG + chr1_3:47230483-47230502 None:intergenic 35.0%
! TTCAACACTTTCTTTTGGGC+GGG - chr1_3:47228855-47228874 Msa0121410:three_prime_UTR 40.0%
!! AGATTCTGAGGTGAATAGGA+AGG + chr1_3:47229115-47229134 None:intergenic 40.0%
ACCTCAGAATCTGTAAACGA+AGG - chr1_3:47229123-47229142 Msa0121410:CDS 40.0%
ACCTTCGTTTACAGATTCTG+AGG + chr1_3:47229127-47229146 None:intergenic 40.0%
CTTTGGTGAAATCACAACCA+AGG - chr1_3:47229263-47229282 Msa0121410:CDS 40.0%
TGAAATCACAACCAAGGCAA+AGG - chr1_3:47229269-47229288 Msa0121410:CDS 40.0%
GAACTCCTTGAGCAATATCA+GGG + chr1_3:47229407-47229426 None:intergenic 40.0%
TGAACTCCTTGAGCAATATC+AGG + chr1_3:47229408-47229427 None:intergenic 40.0%
GATATTGCTCAAGGAGTTCA+CGG - chr1_3:47229408-47229427 Msa0121410:CDS 40.0%
CATGTGCTTGCCACTAAAAT+TGG - chr1_3:47229528-47229547 Msa0121410:CDS 40.0%
CTTTCTAACTTCAGTGAGCT+TGG + chr1_3:47229556-47229575 None:intergenic 40.0%
GAAAGAATAAGACATGCCCA+TGG - chr1_3:47229571-47229590 Msa0121410:CDS 40.0%
!! CAAGAATGATAATGGAGCCA+TGG - chr1_3:47229632-47229651 Msa0121410:CDS 40.0%
! TGTCGTCAAGGTATTTAGCT+GGG + chr1_3:47229764-47229783 None:intergenic 40.0%
! TTGTCGTCAAGGTATTTAGC+TGG + chr1_3:47229765-47229784 None:intergenic 40.0%
CAATCACAAACCTACCTGAA+GGG + chr1_3:47229806-47229825 None:intergenic 40.0%
ATTGATACCTATGGTGGTTG+GGG - chr1_3:47229870-47229889 Msa0121410:CDS 40.0%
!! CAAAAAGTGTTGTCGCTTCA+GGG - chr1_3:47229973-47229992 Msa0121410:CDS 40.0%
GTGCAGGTTTCTTATGCAAT+TGG - chr1_3:47230014-47230033 Msa0121410:CDS 40.0%
!! AGGTTGATAGCAATCATTCC+AGG + chr1_3:47230140-47230159 None:intergenic 40.0%
! GTGACGATCCTGATTTTACA+TGG - chr1_3:47230222-47230241 Msa0121410:CDS 40.0%
ACAGTCTCCCATGTAAAATC+AGG + chr1_3:47230233-47230252 None:intergenic 40.0%
! GGGAGTTATGGTATTTTCAG+AGG - chr1_3:47230278-47230297 Msa0121410:intron 40.0%
TTTACACCAACCACACAAGT+CGG + chr1_3:47230582-47230601 None:intergenic 40.0%
! TTCAACACTTTCTTTTGGGC+GGG - chr1_3:47228855-47228874 Msa0121410:three_prime_UTR 40.0%
!! AGATTCTGAGGTGAATAGGA+AGG + chr1_3:47229115-47229134 None:intergenic 40.0%
ACCTCAGAATCTGTAAACGA+AGG - chr1_3:47229123-47229142 Msa0121410:CDS 40.0%
ACCTTCGTTTACAGATTCTG+AGG + chr1_3:47229127-47229146 None:intergenic 40.0%
CTTTGGTGAAATCACAACCA+AGG - chr1_3:47229263-47229282 Msa0121410:CDS 40.0%
TGAAATCACAACCAAGGCAA+AGG - chr1_3:47229269-47229288 Msa0121410:CDS 40.0%
GAACTCCTTGAGCAATATCA+GGG + chr1_3:47229407-47229426 None:intergenic 40.0%
TGAACTCCTTGAGCAATATC+AGG + chr1_3:47229408-47229427 None:intergenic 40.0%
GATATTGCTCAAGGAGTTCA+CGG - chr1_3:47229408-47229427 Msa0121410:CDS 40.0%
CATGTGCTTGCCACTAAAAT+TGG - chr1_3:47229528-47229547 Msa0121410:CDS 40.0%
CTTTCTAACTTCAGTGAGCT+TGG + chr1_3:47229556-47229575 None:intergenic 40.0%
GAAAGAATAAGACATGCCCA+TGG - chr1_3:47229571-47229590 Msa0121410:CDS 40.0%
!! CAAGAATGATAATGGAGCCA+TGG - chr1_3:47229632-47229651 Msa0121410:CDS 40.0%
! TGTCGTCAAGGTATTTAGCT+GGG + chr1_3:47229764-47229783 None:intergenic 40.0%
! TTGTCGTCAAGGTATTTAGC+TGG + chr1_3:47229765-47229784 None:intergenic 40.0%
CAATCACAAACCTACCTGAA+GGG + chr1_3:47229806-47229825 None:intergenic 40.0%
ATTGATACCTATGGTGGTTG+GGG - chr1_3:47229870-47229889 Msa0121410:CDS 40.0%
!! CAAAAAGTGTTGTCGCTTCA+GGG - chr1_3:47229973-47229992 Msa0121410:CDS 40.0%
GTGCAGGTTTCTTATGCAAT+TGG - chr1_3:47230014-47230033 Msa0121410:CDS 40.0%
!! AGGTTGATAGCAATCATTCC+AGG + chr1_3:47230140-47230159 None:intergenic 40.0%
! GTGACGATCCTGATTTTACA+TGG - chr1_3:47230222-47230241 Msa0121410:CDS 40.0%
ACAGTCTCCCATGTAAAATC+AGG + chr1_3:47230233-47230252 None:intergenic 40.0%
! GGGAGTTATGGTATTTTCAG+AGG - chr1_3:47230278-47230297 Msa0121410:intron 40.0%
TTTACACCAACCACACAAGT+CGG + chr1_3:47230582-47230601 None:intergenic 40.0%
! TCAACACTTTCTTTTGGGCG+GGG - chr1_3:47228856-47228875 Msa0121410:three_prime_UTR 45.0%
AACCTGGTCACAGATCTTGT+CGG + chr1_3:47229154-47229173 None:intergenic 45.0%
GGAGCAAGATAAAGAGAGCA+AGG - chr1_3:47229200-47229219 Msa0121410:CDS 45.0%
! AGTTTTTGTACAGGTCTCGC+AGG + chr1_3:47229229-47229248 None:intergenic 45.0%
AATCACAACCAAGGCAAAGG+TGG - chr1_3:47229272-47229291 Msa0121410:CDS 45.0%
AAATAGTTCGGGACACTTGC+AGG - chr1_3:47229304-47229323 Msa0121410:CDS 45.0%
AGCAAGAAGCCTGAGGAAAT+TGG - chr1_3:47229438-47229457 Msa0121410:CDS 45.0%
GAAATTGGAGCTGGTGATCA+AGG - chr1_3:47229453-47229472 Msa0121410:CDS 45.0%
GGTGATCAAGGTCACATGTT+TGG - chr1_3:47229465-47229484 Msa0121410:CDS 45.0%
TAGTTCAGGTGTTTCGTCAG+TGG + chr1_3:47229496-47229515 None:intergenic 45.0%
TGTGTGAGTGGCATTAGTTC+AGG + chr1_3:47229510-47229529 None:intergenic 45.0%
! GAGCTTGGCACCAATTTTAG+TGG + chr1_3:47229541-47229560 None:intergenic 45.0%
ATAAGACATGCCCATGGGTT+AGG - chr1_3:47229577-47229596 Msa0121410:CDS 45.0%
GTAACTTGGGTCTTACCATC+AGG + chr1_3:47229603-47229622 None:intergenic 45.0%
!! CGTCGTGTTGAGTTGAAATG+AGG + chr1_3:47229680-47229699 None:intergenic 45.0%
TGAAGGGTTGAGATGGAAGA+TGG + chr1_3:47229790-47229809 None:intergenic 45.0%
ATCTTCCATCTCAACCCTTC+AGG - chr1_3:47229789-47229808 Msa0121410:CDS 45.0%
CCAATCACAAACCTACCTGA+AGG + chr1_3:47229807-47229826 None:intergenic 45.0%
CCTTCAGGTAGGTTTGTGAT+TGG - chr1_3:47229804-47229823 Msa0121410:CDS 45.0%
TCAGGTAGGTTTGTGATTGG+TGG - chr1_3:47229807-47229826 Msa0121410:CDS 45.0%
! TTTGTGATTGGTGGACCTCA+TGG - chr1_3:47229816-47229835 Msa0121410:CDS 45.0%
GGAGTGGTGCTTACATTGTT+AGG - chr1_3:47229943-47229962 Msa0121410:CDS 45.0%
!! GCAAAAAGTGTTGTCGCTTC+AGG - chr1_3:47229972-47229991 Msa0121410:CDS 45.0%
ACAAACACAGAAAGTGGCTC+TGG + chr1_3:47230044-47230063 None:intergenic 45.0%
! AGAGCCACTTTCTGTGTTTG+TGG - chr1_3:47230043-47230062 Msa0121410:CDS 45.0%
GTGTCCACAAACACAGAAAG+TGG + chr1_3:47230050-47230069 None:intergenic 45.0%
!!! GAGAATTTTGACTTCAGGCC+TGG - chr1_3:47230119-47230138 Msa0121410:CDS 45.0%
ATCAACCTTGACCTCACAAG+AGG - chr1_3:47230152-47230171 Msa0121410:CDS 45.0%
TGAATTTGCCACCTCTTGTG+AGG + chr1_3:47230166-47230185 None:intergenic 45.0%
TCACAAGAGGTGGCAAATTC+AGG - chr1_3:47230165-47230184 Msa0121410:CDS 45.0%
! TACCAGAAGACTGCTGCTTA+CGG - chr1_3:47230188-47230207 Msa0121410:CDS 45.0%
! TCAACACTTTCTTTTGGGCG+GGG - chr1_3:47228856-47228875 Msa0121410:three_prime_UTR 45.0%
AACCTGGTCACAGATCTTGT+CGG + chr1_3:47229154-47229173 None:intergenic 45.0%
GGAGCAAGATAAAGAGAGCA+AGG - chr1_3:47229200-47229219 Msa0121410:CDS 45.0%
! AGTTTTTGTACAGGTCTCGC+AGG + chr1_3:47229229-47229248 None:intergenic 45.0%
AATCACAACCAAGGCAAAGG+TGG - chr1_3:47229272-47229291 Msa0121410:CDS 45.0%
AAATAGTTCGGGACACTTGC+AGG - chr1_3:47229304-47229323 Msa0121410:CDS 45.0%
AGCAAGAAGCCTGAGGAAAT+TGG - chr1_3:47229438-47229457 Msa0121410:CDS 45.0%
GAAATTGGAGCTGGTGATCA+AGG - chr1_3:47229453-47229472 Msa0121410:CDS 45.0%
GGTGATCAAGGTCACATGTT+TGG - chr1_3:47229465-47229484 Msa0121410:CDS 45.0%
TAGTTCAGGTGTTTCGTCAG+TGG + chr1_3:47229496-47229515 None:intergenic 45.0%
TGTGTGAGTGGCATTAGTTC+AGG + chr1_3:47229510-47229529 None:intergenic 45.0%
! GAGCTTGGCACCAATTTTAG+TGG + chr1_3:47229541-47229560 None:intergenic 45.0%
ATAAGACATGCCCATGGGTT+AGG - chr1_3:47229577-47229596 Msa0121410:CDS 45.0%
GTAACTTGGGTCTTACCATC+AGG + chr1_3:47229603-47229622 None:intergenic 45.0%
!! CGTCGTGTTGAGTTGAAATG+AGG + chr1_3:47229680-47229699 None:intergenic 45.0%
TGAAGGGTTGAGATGGAAGA+TGG + chr1_3:47229790-47229809 None:intergenic 45.0%
ATCTTCCATCTCAACCCTTC+AGG - chr1_3:47229789-47229808 Msa0121410:CDS 45.0%
CCAATCACAAACCTACCTGA+AGG + chr1_3:47229807-47229826 None:intergenic 45.0%
CCTTCAGGTAGGTTTGTGAT+TGG - chr1_3:47229804-47229823 Msa0121410:CDS 45.0%
TCAGGTAGGTTTGTGATTGG+TGG - chr1_3:47229807-47229826 Msa0121410:CDS 45.0%
! TTTGTGATTGGTGGACCTCA+TGG - chr1_3:47229816-47229835 Msa0121410:CDS 45.0%
GGAGTGGTGCTTACATTGTT+AGG - chr1_3:47229943-47229962 Msa0121410:CDS 45.0%
!! GCAAAAAGTGTTGTCGCTTC+AGG - chr1_3:47229972-47229991 Msa0121410:CDS 45.0%
ACAAACACAGAAAGTGGCTC+TGG + chr1_3:47230044-47230063 None:intergenic 45.0%
! AGAGCCACTTTCTGTGTTTG+TGG - chr1_3:47230043-47230062 Msa0121410:CDS 45.0%
GTGTCCACAAACACAGAAAG+TGG + chr1_3:47230050-47230069 None:intergenic 45.0%
!!! GAGAATTTTGACTTCAGGCC+TGG - chr1_3:47230119-47230138 Msa0121410:CDS 45.0%
ATCAACCTTGACCTCACAAG+AGG - chr1_3:47230152-47230171 Msa0121410:CDS 45.0%
TGAATTTGCCACCTCTTGTG+AGG + chr1_3:47230166-47230185 None:intergenic 45.0%
TCACAAGAGGTGGCAAATTC+AGG - chr1_3:47230165-47230184 Msa0121410:CDS 45.0%
! TACCAGAAGACTGCTGCTTA+CGG - chr1_3:47230188-47230207 Msa0121410:CDS 45.0%
! CAACACTTTCTTTTGGGCGG+GGG - chr1_3:47228857-47228876 Msa0121410:three_prime_UTR 50.0%
! AACACTTTCTTTTGGGCGGG+GGG - chr1_3:47228858-47228877 Msa0121410:three_prime_UTR 50.0%
ACCTGGTCACAGATCTTGTC+GGG + chr1_3:47229153-47229172 None:intergenic 50.0%
! CAAGGATGGCATCTGAAACC+TGG + chr1_3:47229170-47229189 None:intergenic 50.0%
TGCCATCCTTGATGCATGCT+TGG - chr1_3:47229179-47229198 Msa0121410:CDS 50.0%
CTCCAAGCATGCATCAAGGA+TGG + chr1_3:47229184-47229203 None:intergenic 50.0%
CTTGCTCCAAGCATGCATCA+AGG + chr1_3:47229188-47229207 None:intergenic 50.0%
CTCATAGTCCACCTTTGCCT+TGG + chr1_3:47229283-47229302 None:intergenic 50.0%
!! GGGACACTTGCAGGAGTATT+GGG - chr1_3:47229313-47229332 Msa0121410:CDS 50.0%
GGGTTTGTGTCTGCTGATGT+TGG - chr1_3:47229333-47229352 Msa0121410:CDS 50.0%
CAGAGCCCTGATATTGCTCA+AGG - chr1_3:47229399-47229418 Msa0121410:CDS 50.0%
TCACTTGAGCAAGAAGCCTG+AGG - chr1_3:47229431-47229450 Msa0121410:CDS 50.0%
AAGCCTGAGGAAATTGGAGC+TGG - chr1_3:47229444-47229463 Msa0121410:CDS 50.0%
TCACCAGCTCCAATTTCCTC+AGG + chr1_3:47229450-47229469 None:intergenic 50.0%
TACCATCAGGCCTAACCCAT+GGG + chr1_3:47229590-47229609 None:intergenic 50.0%
TTACCATCAGGCCTAACCCA+TGG + chr1_3:47229591-47229610 None:intergenic 50.0%
GGATTGTGTGCACGCGAATA+GGG + chr1_3:47229659-47229678 None:intergenic 50.0%
AGGATTGTGTGCACGCGAAT+AGG + chr1_3:47229660-47229679 None:intergenic 50.0%
AGGTATTTAGCTGGGACGAC+AGG + chr1_3:47229756-47229775 None:intergenic 50.0%
!! GGAAGATGGTCTTGTCGTCA+AGG + chr1_3:47229776-47229795 None:intergenic 50.0%
TCCATCTCAACCCTTCAGGT+AGG - chr1_3:47229793-47229812 Msa0121410:CDS 50.0%
ACCTACCTGAAGGGTTGAGA+TGG + chr1_3:47229797-47229816 None:intergenic 50.0%
GGTTGGATCCTTTCCTGAGA+AGG + chr1_3:47229913-47229932 None:intergenic 50.0%
CTCAGGAAAGGATCCAACCA+AGG - chr1_3:47229914-47229933 Msa0121410:CDS 50.0%
AGGAAAGGATCCAACCAAGG+TGG - chr1_3:47229917-47229936 Msa0121410:CDS 50.0%
TGCTCGTCGTTGTATTGTGC+AGG - chr1_3:47229998-47230017 Msa0121410:CDS 50.0%
AACCTTGACCTCACAAGAGG+TGG - chr1_3:47230155-47230174 Msa0121410:CDS 50.0%
! ACCAGAAGACTGCTGCTTAC+GGG - chr1_3:47230189-47230208 Msa0121410:CDS 50.0%
!! ACTGCTGCTTACGGGCATTT+TGG - chr1_3:47230197-47230216 Msa0121410:CDS 50.0%
TGTGAAGATGCTCAAGCCCA+AGG - chr1_3:47230250-47230269 Msa0121410:CDS 50.0%
CCATAACTCCCTCAAGCCTT+GGG + chr1_3:47230269-47230288 None:intergenic 50.0%
ACCATAACTCCCTCAAGCCT+TGG + chr1_3:47230270-47230289 None:intergenic 50.0%
GAGCAGATATGTGCTCTCCT+AGG - chr1_3:47230424-47230443 Msa0121410:intron 50.0%
GATATGTGCTCTCCTAGGTG+TGG - chr1_3:47230429-47230448 Msa0121410:intron 50.0%
! ACTGGAGGCTTTGGCACAAT+AGG - chr1_3:47230452-47230471 Msa0121410:CDS 50.0%
!! TTTCTCGCAACCGACTTGTG+TGG - chr1_3:47230569-47230588 Msa0121410:five_prime_UTR 50.0%
CATCAGAAACTACAGCCAGC+AGG + chr1_3:47230678-47230697 None:intergenic 50.0%
! CTGCTGGCTGTAGTTTCTGA+TGG - chr1_3:47230676-47230695 Msa0121410:five_prime_UTR 50.0%
! CAACACTTTCTTTTGGGCGG+GGG - chr1_3:47228857-47228876 Msa0121410:three_prime_UTR 50.0%
! AACACTTTCTTTTGGGCGGG+GGG - chr1_3:47228858-47228877 Msa0121410:three_prime_UTR 50.0%
ACCTGGTCACAGATCTTGTC+GGG + chr1_3:47229153-47229172 None:intergenic 50.0%
! CAAGGATGGCATCTGAAACC+TGG + chr1_3:47229170-47229189 None:intergenic 50.0%
TGCCATCCTTGATGCATGCT+TGG - chr1_3:47229179-47229198 Msa0121410:CDS 50.0%
CTCCAAGCATGCATCAAGGA+TGG + chr1_3:47229184-47229203 None:intergenic 50.0%
CTTGCTCCAAGCATGCATCA+AGG + chr1_3:47229188-47229207 None:intergenic 50.0%
CTCATAGTCCACCTTTGCCT+TGG + chr1_3:47229283-47229302 None:intergenic 50.0%
!! GGGACACTTGCAGGAGTATT+GGG - chr1_3:47229313-47229332 Msa0121410:CDS 50.0%
GGGTTTGTGTCTGCTGATGT+TGG - chr1_3:47229333-47229352 Msa0121410:CDS 50.0%
CAGAGCCCTGATATTGCTCA+AGG - chr1_3:47229399-47229418 Msa0121410:CDS 50.0%
TCACTTGAGCAAGAAGCCTG+AGG - chr1_3:47229431-47229450 Msa0121410:CDS 50.0%
AAGCCTGAGGAAATTGGAGC+TGG - chr1_3:47229444-47229463 Msa0121410:CDS 50.0%
TCACCAGCTCCAATTTCCTC+AGG + chr1_3:47229450-47229469 None:intergenic 50.0%
TACCATCAGGCCTAACCCAT+GGG + chr1_3:47229590-47229609 None:intergenic 50.0%
TTACCATCAGGCCTAACCCA+TGG + chr1_3:47229591-47229610 None:intergenic 50.0%
GGATTGTGTGCACGCGAATA+GGG + chr1_3:47229659-47229678 None:intergenic 50.0%
AGGATTGTGTGCACGCGAAT+AGG + chr1_3:47229660-47229679 None:intergenic 50.0%
AGGTATTTAGCTGGGACGAC+AGG + chr1_3:47229756-47229775 None:intergenic 50.0%
!! GGAAGATGGTCTTGTCGTCA+AGG + chr1_3:47229776-47229795 None:intergenic 50.0%
TCCATCTCAACCCTTCAGGT+AGG - chr1_3:47229793-47229812 Msa0121410:CDS 50.0%
ACCTACCTGAAGGGTTGAGA+TGG + chr1_3:47229797-47229816 None:intergenic 50.0%
GGTTGGATCCTTTCCTGAGA+AGG + chr1_3:47229913-47229932 None:intergenic 50.0%
CTCAGGAAAGGATCCAACCA+AGG - chr1_3:47229914-47229933 Msa0121410:CDS 50.0%
AGGAAAGGATCCAACCAAGG+TGG - chr1_3:47229917-47229936 Msa0121410:CDS 50.0%
TGCTCGTCGTTGTATTGTGC+AGG - chr1_3:47229998-47230017 Msa0121410:CDS 50.0%
AACCTTGACCTCACAAGAGG+TGG - chr1_3:47230155-47230174 Msa0121410:CDS 50.0%
! ACCAGAAGACTGCTGCTTAC+GGG - chr1_3:47230189-47230208 Msa0121410:CDS 50.0%
!! ACTGCTGCTTACGGGCATTT+TGG - chr1_3:47230197-47230216 Msa0121410:CDS 50.0%
TGTGAAGATGCTCAAGCCCA+AGG - chr1_3:47230250-47230269 Msa0121410:CDS 50.0%
CCATAACTCCCTCAAGCCTT+GGG + chr1_3:47230269-47230288 None:intergenic 50.0%
ACCATAACTCCCTCAAGCCT+TGG + chr1_3:47230270-47230289 None:intergenic 50.0%
GAGCAGATATGTGCTCTCCT+AGG - chr1_3:47230424-47230443 Msa0121410:intron 50.0%
GATATGTGCTCTCCTAGGTG+TGG - chr1_3:47230429-47230448 Msa0121410:intron 50.0%
! ACTGGAGGCTTTGGCACAAT+AGG - chr1_3:47230452-47230471 Msa0121410:CDS 50.0%
!! TTTCTCGCAACCGACTTGTG+TGG - chr1_3:47230569-47230588 Msa0121410:five_prime_UTR 50.0%
CATCAGAAACTACAGCCAGC+AGG + chr1_3:47230678-47230697 None:intergenic 50.0%
! CTGCTGGCTGTAGTTTCTGA+TGG - chr1_3:47230676-47230695 Msa0121410:five_prime_UTR 50.0%
! TTTCTTTTGGGCGGGGGGTT+GGG - chr1_3:47228863-47228882 Msa0121410:three_prime_UTR 55.0%
CCTGGTCACAGATCTTGTCG+GGG + chr1_3:47229152-47229171 None:intergenic 55.0%
! CGGGACACTTGCAGGAGTAT+TGG - chr1_3:47229312-47229331 Msa0121410:CDS 55.0%
GTGGCAAGCACATGTGTGAG+TGG + chr1_3:47229522-47229541 None:intergenic 55.0%
! TGGTGGACCTCATGGAGATG+CGG - chr1_3:47229824-47229843 Msa0121410:CDS 55.0%
ATGAGCACCCCAACCACCAT+AGG + chr1_3:47229880-47229899 None:intergenic 55.0%
! TATGGTGGTTGGGGTGCTCA+TGG - chr1_3:47229879-47229898 Msa0121410:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG - chr1_3:47229902-47229921 Msa0121410:CDS 55.0%
AGGATCCAACCAAGGTGGAC+AGG - chr1_3:47229922-47229941 Msa0121410:CDS 55.0%
TGCCACCTCTTGTGAGGTCA+AGG + chr1_3:47230160-47230179 None:intergenic 55.0%
ATGCTCAAGCCCAAGGCTTG+AGG - chr1_3:47230257-47230276 Msa0121410:CDS 55.0%
TGCTCAAGCCCAAGGCTTGA+GGG - chr1_3:47230258-47230277 Msa0121410:CDS 55.0%
CCCAAGGCTTGAGGGAGTTA+TGG - chr1_3:47230266-47230285 Msa0121410:CDS 55.0%
AAAGCCTCCAGTCCACACCT+AGG + chr1_3:47230444-47230463 None:intergenic 55.0%
!! TAGGTGTGGACTGGAGGCTT+TGG - chr1_3:47230443-47230462 Msa0121410:intron 55.0%
!! TCGCAACCGACTTGTGTGGT+TGG - chr1_3:47230573-47230592 Msa0121410:five_prime_UTR 55.0%
! TTTCTTTTGGGCGGGGGGTT+GGG - chr1_3:47228863-47228882 Msa0121410:three_prime_UTR 55.0%
CCTGGTCACAGATCTTGTCG+GGG + chr1_3:47229152-47229171 None:intergenic 55.0%
! CGGGACACTTGCAGGAGTAT+TGG - chr1_3:47229312-47229331 Msa0121410:CDS 55.0%
GTGGCAAGCACATGTGTGAG+TGG + chr1_3:47229522-47229541 None:intergenic 55.0%
! TGGTGGACCTCATGGAGATG+CGG - chr1_3:47229824-47229843 Msa0121410:CDS 55.0%
ATGAGCACCCCAACCACCAT+AGG + chr1_3:47229880-47229899 None:intergenic 55.0%
! TATGGTGGTTGGGGTGCTCA+TGG - chr1_3:47229879-47229898 Msa0121410:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG - chr1_3:47229902-47229921 Msa0121410:CDS 55.0%
AGGATCCAACCAAGGTGGAC+AGG - chr1_3:47229922-47229941 Msa0121410:CDS 55.0%
TGCCACCTCTTGTGAGGTCA+AGG + chr1_3:47230160-47230179 None:intergenic 55.0%
ATGCTCAAGCCCAAGGCTTG+AGG - chr1_3:47230257-47230276 Msa0121410:CDS 55.0%
TGCTCAAGCCCAAGGCTTGA+GGG - chr1_3:47230258-47230277 Msa0121410:CDS 55.0%
CCCAAGGCTTGAGGGAGTTA+TGG - chr1_3:47230266-47230285 Msa0121410:CDS 55.0%
AAAGCCTCCAGTCCACACCT+AGG + chr1_3:47230444-47230463 None:intergenic 55.0%
!! TAGGTGTGGACTGGAGGCTT+TGG - chr1_3:47230443-47230462 Msa0121410:intron 55.0%
!! TCGCAACCGACTTGTGTGGT+TGG - chr1_3:47230573-47230592 Msa0121410:five_prime_UTR 55.0%
! CTTTCTTTTGGGCGGGGGGT+TGG - chr1_3:47228862-47228881 Msa0121410:three_prime_UTR 60.0%
! TTCTTTTGGGCGGGGGGTTG+GGG - chr1_3:47228864-47228883 Msa0121410:three_prime_UTR 60.0%
CCCCGACAAGATCTGTGACC+AGG - chr1_3:47229149-47229168 Msa0121410:CDS 60.0%
!! TGCCCATGGGTTAGGCCTGA+TGG - chr1_3:47229585-47229604 Msa0121410:CDS 60.0%
GTGCACGCGAATAGGGACCA+TGG + chr1_3:47229652-47229671 None:intergenic 60.0%
GGTGGACCTCATGGAGATGC+GGG - chr1_3:47229825-47229844 Msa0121410:CDS 60.0%
GTGGACCTCATGGAGATGCG+GGG - chr1_3:47229826-47229845 Msa0121410:CDS 60.0%
!! CATGGTGGAGGTGCCTTCTC+AGG - chr1_3:47229897-47229916 Msa0121410:CDS 60.0%
CCACTCCTGTCCACCTTGGT+TGG + chr1_3:47229930-47229949 None:intergenic 60.0%
CCAACCAAGGTGGACAGGAG+TGG - chr1_3:47229927-47229946 Msa0121410:CDS 60.0%
AGCACCACTCCTGTCCACCT+TGG + chr1_3:47229934-47229953 None:intergenic 60.0%
GCCCGTAAGCAGCAGTCTTC+TGG + chr1_3:47230193-47230212 None:intergenic 60.0%
GTGCTCTCCTAGGTGTGGAC+TGG - chr1_3:47230434-47230453 Msa0121410:intron 60.0%
!! CTCTCCTAGGTGTGGACTGG+AGG - chr1_3:47230437-47230456 Msa0121410:intron 60.0%
! CTTTCTTTTGGGCGGGGGGT+TGG - chr1_3:47228862-47228881 Msa0121410:three_prime_UTR 60.0%
! TTCTTTTGGGCGGGGGGTTG+GGG - chr1_3:47228864-47228883 Msa0121410:three_prime_UTR 60.0%
CCCCGACAAGATCTGTGACC+AGG - chr1_3:47229149-47229168 Msa0121410:CDS 60.0%
!! TGCCCATGGGTTAGGCCTGA+TGG - chr1_3:47229585-47229604 Msa0121410:CDS 60.0%
GTGCACGCGAATAGGGACCA+TGG + chr1_3:47229652-47229671 None:intergenic 60.0%
GGTGGACCTCATGGAGATGC+GGG - chr1_3:47229825-47229844 Msa0121410:CDS 60.0%
GTGGACCTCATGGAGATGCG+GGG - chr1_3:47229826-47229845 Msa0121410:CDS 60.0%
!! CATGGTGGAGGTGCCTTCTC+AGG - chr1_3:47229897-47229916 Msa0121410:CDS 60.0%
CCACTCCTGTCCACCTTGGT+TGG + chr1_3:47229930-47229949 None:intergenic 60.0%
CCAACCAAGGTGGACAGGAG+TGG - chr1_3:47229927-47229946 Msa0121410:CDS 60.0%
AGCACCACTCCTGTCCACCT+TGG + chr1_3:47229934-47229953 None:intergenic 60.0%
GCCCGTAAGCAGCAGTCTTC+TGG + chr1_3:47230193-47230212 None:intergenic 60.0%
GTGCTCTCCTAGGTGTGGAC+TGG - chr1_3:47230434-47230453 Msa0121410:intron 60.0%
!! CTCTCCTAGGTGTGGACTGG+AGG - chr1_3:47230437-47230456 Msa0121410:intron 60.0%
GTGAGCCCCGCATCTCCATG+AGG + chr1_3:47229834-47229853 None:intergenic 65.0%
CATGGAGATGCGGGGCTCAC+CGG - chr1_3:47229834-47229853 Msa0121410:CDS 65.0%
! GGTGGTTGGGGTGCTCATGG+TGG - chr1_3:47229882-47229901 Msa0121410:CDS 65.0%
! GGTTGGGGTGCTCATGGTGG+AGG - chr1_3:47229885-47229904 Msa0121410:CDS 65.0%
GTGAGCCCCGCATCTCCATG+AGG + chr1_3:47229834-47229853 None:intergenic 65.0%
CATGGAGATGCGGGGCTCAC+CGG - chr1_3:47229834-47229853 Msa0121410:CDS 65.0%
! GGTGGTTGGGGTGCTCATGG+TGG - chr1_3:47229882-47229901 Msa0121410:CDS 65.0%
! GGTTGGGGTGCTCATGGTGG+AGG - chr1_3:47229885-47229904 Msa0121410:CDS 65.0%
! TTTTGGGCGGGGGGTTGGGG+TGG - chr1_3:47228867-47228886 Msa0121410:three_prime_UTR 70.0%
GAGATGCGGGGCTCACCGGA+AGG - chr1_3:47229838-47229857 Msa0121410:CDS 70.0%
! TTTTGGGCGGGGGGTTGGGG+TGG - chr1_3:47228867-47228886 Msa0121410:three_prime_UTR 70.0%
GAGATGCGGGGCTCACCGGA+AGG - chr1_3:47229838-47229857 Msa0121410:CDS 70.0%
! TGGGCGGGGGGTTGGGGTGG+AGG - chr1_3:47228870-47228889 Msa0121410:three_prime_UTR 80.0%
! TGGGCGGGGGGTTGGGGTGG+AGG - chr1_3:47228870-47228889 Msa0121410:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 47228665 47230727 47228665 ID=Msa0121410;Name=Msa0121410
chr1_3 mRNA 47228665 47230727 47228665 ID=Msa0121410-mRNA-1;Parent=Msa0121410;Name=Msa0121410-mRNA-1;_AED=0.07;_eAED=0.07;_QI=231|1|1|1|0|0|3|377|408
chr1_3 exon 47228665 47229002 47228665 ID=Msa0121410-mRNA-1:exon:14250;Parent=Msa0121410-mRNA-1
chr1_3 exon 47229076 47230289 47229076 ID=Msa0121410-mRNA-1:exon:14249;Parent=Msa0121410-mRNA-1
chr1_3 exon 47230445 47230727 47230445 ID=Msa0121410-mRNA-1:exon:14248;Parent=Msa0121410-mRNA-1
chr1_3 five_prime_UTR 47230497 47230727 47230497 ID=Msa0121410-mRNA-1:five_prime_utr;Parent=Msa0121410-mRNA-1
chr1_3 CDS 47230445 47230496 47230445 ID=Msa0121410-mRNA-1:cds;Parent=Msa0121410-mRNA-1
chr1_3 CDS 47229115 47230289 47229115 ID=Msa0121410-mRNA-1:cds;Parent=Msa0121410-mRNA-1
chr1_3 three_prime_UTR 47229076 47229114 47229076 ID=Msa0121410-mRNA-1:three_prime_utr;Parent=Msa0121410-mRNA-1
chr1_3 three_prime_UTR 47228665 47229002 47228665 ID=Msa0121410-mRNA-1:three_prime_utr;Parent=Msa0121410-mRNA-1
Gene Sequence

>Msa0121410

ATGTATGATAGCAGAGTAAATTTTGTGTGTGAATTATTTCCTTTGCATAGTGATATGGATACCTTCCTATTCACCTCAGAATCTGTAAACGAAGGTCACCCCGACAAGATCTGTGACCAGGTTTCAGATGCCATCCTTGATGCATGCTTGGAGCAAGATAAAGAGAGCAAGGTTGCCTGCGAGACCTGTACAAAAACTAACATGGTTATGGTCTTTGGTGAAATCACAACCAAGGCAAAGGTGGACTATGAGAAAATAGTTCGGGACACTTGCAGGAGTATTGGGTTTGTGTCTGCTGATGTTGGTCTTGATGCTGACAAATGCAATGTTCTCGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAAGGAGTTCACGGTCACTTGAGCAAGAAGCCTGAGGAAATTGGAGCTGGTGATCAAGGTCACATGTTTGGCTATGCCACTGACGAAACACCTGAACTAATGCCACTCACACATGTGCTTGCCACTAAAATTGGTGCCAAGCTCACTGAAGTTAGAAAGAATAAGACATGCCCATGGGTTAGGCCTGATGGTAAGACCCAAGTTACCGTTGAATACAAGAATGATAATGGAGCCATGGTCCCTATTCGCGTGCACACAATCCTCATTTCAACTCAACACGACGAAACTGTCACAAATGAAAAGATTGCTCAAGATTTGAAAGAGCATGTTATTAAACCTGTCGTCCCAGCTAAATACCTTGACGACAAGACCATCTTCCATCTCAACCCTTCAGGTAGGTTTGTGATTGGTGGACCTCATGGAGATGCGGGGCTCACCGGAAGGAAGATCATTATTGATACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGAAAGGATCCAACCAAGGTGGACAGGAGTGGTGCTTACATTGTTAGGCAAGCTGCAAAAAGTGTTGTCGCTTCAGGGCTTGCTCGTCGTTGTATTGTGCAGGTTTCTTATGCAATTGGAGTGCCAGAGCCACTTTCTGTGTTTGTGGACACTTACAAAACTGGAAAGATTCCAGATAAGGATATTTTGGTTCTGATTAAGGAGAATTTTGACTTCAGGCCTGGAATGATTGCTATCAACCTTGACCTCACAAGAGGTGGCAAATTCAGGTACCAGAAGACTGCTGCTTACGGGCATTTTGGACGTGACGATCCTGATTTTACATGGGAGACTGTGAAGATGCTCAAGCCCAAGGCTTGA
Protein sequence

>Msa0121410

MYDSRVNFVCELFPLHSDMDTFLFTSESVNEGHPDKICDQVSDAILDACLEQDKESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSADVGLDADKCNVLVNIEQQSPDIAQGVHGHLSKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKIGAKLTEVRKNKTCPWVRPDGKTQVTVEYKNDNGAMVPIRVHTILISTQHDETVTNEKIAQDLKEHVIKPVVPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKENFDFRPGMIAINLDLTRGGKFRYQKTAAYGHFGRDDPDFTWETVKMLKPKA*