AlfalfaGEDB | Msa0073210

M. sativa cultivar zhongmu-4 / Msa0073210

KEGG: K00789
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004478 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016765 GO:0022414 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046872 GO:0046914 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944
PFAM: PF00438.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0073210	XP_013468134.1	100.000	390	0	0	1	390	1	390	0.0	805

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0073210	sp\|Q6SYB9\|METK2_TOBAC	93.077	390	27	0	1	390	1	390	0.0	759

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0073210	A0A072VVP7	100.000	390	0	0	1	390	19	408	0.0	805

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0025650	Msa0073210	0.850965	1.207244e-60	-8.615850e-47
Msa0031080	Msa0073210	0.805863	1.087124e-49	-8.615850e-47
Msa0073210	Msa0121410	0.954081	6.580430e-112	-8.615850e-47
Msa0073210	Msa0166070	0.955964	8.954533e-114	-8.615850e-47
Msa0073210	Msa0183720	0.808176	3.522837e-50	-8.615850e-47
Msa0073210	Msa0368640	0.804301	2.307420e-49	-8.615850e-47
Msa0073210	Msa0373550	0.808735	2.676135e-50	-8.615850e-47
Msa0073210	Msa0437500	0.821159	4.681378e-53	-8.615850e-47
Msa0073210	Msa0468660	0.825462	4.626703e-54	-8.615850e-47
Msa0073210	Msa0480280	0.810488	1.124208e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
Msa0073210	MtrunA17_Chr1g0180491	100.000	390	0	1	390	1	390	805
Msa0073210	MtrunA17_Chr7g0264651	94.103	390	23	1	390	1	390	740
Msa0073210	MtrunA17_Chr4g0069201	88.601	386	44	2	387	4	389	696
Msa0073210	MtrunA17_Chr7g0270531	86.788	386	51	2	387	3	388	693
Msa0073210	MtrunA17_Chr2g0302931	88.083	386	46	2	387	4	389	692

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
Msa0073210	AT2G36880.2	92.564	390	29	1	390	1	390	733
Msa0073210	AT2G36880.1	92.564	390	29	1	390	1	390	733
Msa0073210	AT3G17390.1	88.114	387	46	1	387	1	387	696
Msa0073210	AT4G01850.2	87.597	387	48	1	387	1	387	692
Msa0073210	AT4G01850.1	87.597	387	48	1	387	1	387	692
Msa0073210	AT1G02500.1	87.597	387	48	1	387	1	387	688
Msa0073210	AT1G02500.2	87.597	387	48	1	387	1	387	688

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Find 141 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATAAGACATGCCCAT+GGG	0.640830	1_2:-46674733	Msa0073210:CDS
AAAGCCTCCAGTCCACACCT+AGG	0.665696	1_2:+46673864	None:intergenic
AAATAGTTCGGGACACTTGC+AGG	0.334020	1_2:-46675001	Msa0073210:CDS
AACCTGGTCACAGATCTTGT+CGG	0.563707	1_2:+46675154	None:intergenic
AACCTTGACCTCACAAGAGG+TGG	0.593643	1_2:-46674150	Msa0073210:CDS
AACTGGAAAGATTCCAGATA+AGG	0.500009	1_2:-46674229	Msa0073210:CDS
AAGAGGAAGAAATGATAATG+TGG	0.575051	1_2:+46676473	None:intergenic
AAGATCATTATTGATACCTA+TGG	0.514480	1_2:-46674444	Msa0073210:CDS
AAGCCTGAGGAAATTGGAGC+TGG	0.569064	1_2:-46674861	Msa0073210:CDS
AAGGAAAGAAAATGCATAAA+TGG	0.278933	1_2:-46676626	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAGGAAGAGATGGA+GGG	-	chr1_2:46673658-46673677	Msa0073210:three_prime_UTR	30.0%
AATGTGGACTTATATTGGAT+TGG	+	chr1_2:46673731-46673750	None:intergenic	30.0%
AGAAGAATGTGAAATGAAAG+AGG	+	chr1_2:46673764-46673783	None:intergenic	30.0%
TCTAAACAGAATAGGAATCA+TGG	+	chr1_2:46673847-46673866	None:intergenic	30.0%
GTGTTAGATCTAAACAGAAT+AGG	+	chr1_2:46673855-46673874	None:intergenic	30.0%
AGAAAATCAAGATCAAGCTA+TGG	+	chr1_2:46673970-46673989	None:intergenic	30.0%
TGTTGTGAGTTTCAAATCTT+GGG	+	chr1_2:46674099-46674118	None:intergenic	30.0%
ATGTTGTGAGTTTCAAATCT+TGG	+	chr1_2:46674100-46674119	None:intergenic	30.0%
TTGTCTGTATCTATCTGATA+TGG	-	chr1_2:46674195-46674214	Msa0073210:CDS	30.0%
GAATTATTTCCTTTGCATAG+TGG	-	chr1_2:46674838-46674857	Msa0073210:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	46673599	46676640	46673599	ID=Msa0073210;Name=Msa0073210
chr1_2	mRNA	46673599	46676640	46673599	ID=Msa0073210-mRNA-1;Parent=Msa0073210;Name=Msa0073210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=216\|0.5\|0.66\|1\|0\|0\|3\|378\|390
chr1_2	exon	46673599	46673937	46673599	ID=Msa0073210-mRNA-1:exon:14183;Parent=Msa0073210-mRNA-1
chr1_2	exon	46674011	46675222	46674011	ID=Msa0073210-mRNA-1:exon:14182;Parent=Msa0073210-mRNA-1
chr1_2	exon	46676425	46676640	46676425	ID=Msa0073210-mRNA-1:exon:14181;Parent=Msa0073210-mRNA-1
chr1_2	five_prime_UTR	46676425	46676640	46676425	ID=Msa0073210-mRNA-1:five_prime_utr;Parent=Msa0073210-mRNA-1
chr1_2	CDS	46674050	46675222	46674050	ID=Msa0073210-mRNA-1:cds;Parent=Msa0073210-mRNA-1
chr1_2	three_prime_UTR	46674011	46674049	46674011	ID=Msa0073210-mRNA-1:three_prime_utr;Parent=Msa0073210-mRNA-1
chr1_2	three_prime_UTR	46673599	46673937	46673599	ID=Msa0073210-mRNA-1:three_prime_utr;Parent=Msa0073210-mRNA-1

Gene Sequence

>Msa0073210

ATGGATACCTTCCTATTCACCTCAGAATCTGTAAACGAAGGTCACCCCGACAAGATCTGTGACCAGGTTTCAGATGCCATCCTTGATGCATGCTTGGAGCAAGATAAAGAGAGCAAGGTTGCCTGCGAGACCTGTACAAAAACTAACATGGTTATGGTCTTTGGTGAAATCACAACCAAGGCAAAGGTGGACTATGAGAAAATAGTTCGGGACACTTGCAGGAGTATTGGGTTTGTGTCTGCTGATGTTGGTCTTGATGCTGACAAATGCAATGTTCTCGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAAGGAGTTCACGGTCACTTGAGCAAGAAGCCTGAGGAAATTGGAGCTGGTGATCAAGGTCACATGTTTGGCTATGCCACTGACGAAACACCTGAACTAATGCCACTCACACATGTGCTTGCCACTAAAATTGGTGCCAAGCTCACTGAAGTTAGAAAGAATAAGACATGCCCATGGGTTAGGCCTGATGGTAAGACCCAAGTTACCGTTGAATACAAGAATGATAATGGAGCCATGGTCCCTATTCGCGTGCACACAATCCTCATTTCAACTCAACACGACGAAACTGTCACAAATGAAAAGATTGCTCAAGATTTGAAAGAGCATGTTATTAAACCTGTCGTCCCAGCTAAATACCTTGACGACAAGACCATCTTCCATCTCAACCCTTCAGGTAGGTTTGTGATTGGTGGACCTCATGGAGATGCGGGGCTCACCGGAAGGAAGATCATTATTGATACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGAAAGGATCCAACCAAGGTGGACAGGAGTGGTGCTTACATTGTTAGGCAAGCTGCAAAAAGTGTTGTCGCTTCAGGGCTTGCTCGTCGTTGTATTGTGCAGGTTTCTTATGCAATTGGAGTGCCAGAGCCACTTTCTGTTTTTGTGGACACTTACAAAACTGGAAAGATTCCAGATAAGGATATTTTGGTTCTGATTAAGGAGAATTTTGACTTCAGGCCTGGAATGATTGCTATCAACCTTGACCTCACAAGAGGTGGCAAATTCAGGTACCAGAAGACTGCTGCTTACGGGCATTTTGGACGTGACGATCCTGATTTTACATGGGAGACTGTGAAGATGCTCAAGCCCAAGGCTTGA

Protein sequence

>Msa0073210

MDTFLFTSESVNEGHPDKICDQVSDAILDACLEQDKESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSADVGLDADKCNVLVNIEQQSPDIAQGVHGHLSKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKIGAKLTEVRKNKTCPWVRPDGKTQVTVEYKNDNGAMVPIRVHTILISTQHDETVTNEKIAQDLKEHVIKPVVPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKENFDFRPGMIAINLDLTRGGKFRYQKTAAYGHFGRDDPDFTWETVKMLKPKA*