AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0166070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166070 MtrunA17_Chr1g0180491 100.000 390 0 0 19 408 1 390 0.0 805
Msa0166070 MtrunA17_Chr7g0264651 94.103 390 23 0 19 408 1 390 0.0 741
Msa0166070 MtrunA17_Chr4g0069201 88.601 386 44 0 20 405 4 389 0.0 696
Msa0166070 MtrunA17_Chr7g0270531 86.788 386 51 0 20 405 3 388 0.0 692
Msa0166070 MtrunA17_Chr2g0302931 88.083 386 46 0 20 405 4 389 0.0 691
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166070 AT2G36880.2 92.564 390 29 0 19 408 1 390 0.0 731
Msa0166070 AT2G36880.1 92.564 390 29 0 19 408 1 390 0.0 731
Msa0166070 AT3G17390.1 88.114 387 46 0 19 405 1 387 0.0 695
Msa0166070 AT4G01850.2 87.597 387 48 0 19 405 1 387 0.0 692
Msa0166070 AT4G01850.1 87.597 387 48 0 19 405 1 387 0.0 692
Msa0166070 AT1G02500.1 87.597 387 48 0 19 405 1 387 0.0 687
Msa0166070 AT1G02500.2 87.597 387 48 0 19 405 1 387 0.0 687

Find 137 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCCAGATAAGGATATTT+TGG 0.191529 1_4:+47070773 Msa0166070:CDS
TTAAATTTCATTACTGTTAC+TGG 0.198871 1_4:+47071207 Msa0166070:three_prime_UTR
ACTGCTGCTTACGGGCATTT+TGG 0.206540 1_4:+47070885 Msa0166070:CDS
AGCAAGAAGCCTGAGGAAAT+TGG 0.257775 1_4:+47070126 Msa0166070:CDS
CAAATATTACAGAATTCATT+AGG 0.259530 1_4:-47069389 None:intergenic
ACTAACATGGTTATGGTCTT+TGG 0.278992 1_4:+47069934 Msa0166070:CDS
TAGCATTCAACACTTTCTTT+TGG 0.295521 1_4:+47069539 Msa0166070:five_prime_UTR
TGAACTCCTTGAGCAATATC+AGG 0.302469 1_4:-47070093 None:intergenic
GCCCGTAAGCAGCAGTCTTC+TGG 0.322457 1_4:-47070878 None:intergenic
TTTGTGGACACTTACAAAAC+TGG 0.330918 1_4:+47070747 Msa0166070:CDS
TCACAAGAGGTGGCAAATTC+AGG 0.332737 1_4:+47070853 Msa0166070:CDS
AGAACCAAAATATCCTTATC+TGG 0.337009 1_4:-47070777 None:intergenic
AAATAGTTCGTGACACTTGC+AGG 0.350940 1_4:+47069992 Msa0166070:CDS
AGGATTGTGTGCACGCGAAT+AGG 0.355191 1_4:-47070345 None:intergenic
TATTGATACCTATGGTGGTT+GGG 0.358518 1_4:+47070557 Msa0166070:CDS
CTCATAGTCCACCTTTGCCT+TGG 0.368509 1_4:-47069968 None:intergenic
GTGACACTTGCAGGAGTATT+GGG 0.373907 1_4:+47070001 Msa0166070:CDS
GTTGAATACAAGAATGATAA+TGG 0.375620 1_4:+47070312 Msa0166070:CDS
GGAGTGGTGCTTACATTGTT+AGG 0.376670 1_4:+47070631 Msa0166070:CDS
ATCAATAATGATCTTCCTTC+CGG 0.379520 1_4:-47070541 None:intergenic
CATGTGCTTGCCACTAAAAT+TGG 0.379944 1_4:+47070216 Msa0166070:CDS
CGTGACACTTGCAGGAGTAT+TGG 0.381615 1_4:+47070000 Msa0166070:CDS
CATGGTGGAGGTGCCTTCTC+AGG 0.384431 1_4:+47070585 Msa0166070:CDS
TAGGTGTGGACTGGAGGCTT+TGG 0.386100 1_4:+47071131 Msa0166070:three_prime_UTR
TTACAGATTCTGAGGTGAAT+AGG 0.390519 1_4:-47069804 None:intergenic
AAATATTACAGAATTCATTA+GGG 0.398110 1_4:-47069388 None:intergenic
TGCTCGTCGTTGTATTGTGC+AGG 0.400285 1_4:+47070686 Msa0166070:CDS
GTGCAGGTTTCTTATGCAAT+TGG 0.405905 1_4:+47070702 Msa0166070:CDS
ACCAGAAGACTGCTGCTTAC+GGG 0.407668 1_4:+47070877 Msa0166070:CDS
CTGCTGGCTGTAGTTTCTGA+TGG 0.409216 1_4:+47071365 Msa0166070:three_prime_UTR
TCTTGTATTCAACGGTAACT+TGG 0.410805 1_4:-47070302 None:intergenic
TCAGGTAGGTTTGTGATTGG+TGG 0.413640 1_4:+47070495 Msa0166070:CDS
GGTTGGGGTGCTCATGGTGG+AGG 0.416114 1_4:+47070573 Msa0166070:CDS
GGATTGTGTGCACGCGAATA+GGG 0.416704 1_4:-47070344 None:intergenic
ACCTGGTCACAGATCTTGTC+GGG 0.417397 1_4:-47069838 None:intergenic
TTGTCGTCAAGGTATTTAGC+TGG 0.418579 1_4:-47070450 None:intergenic
CCTTCAGGTAGGTTTGTGAT+TGG 0.422961 1_4:+47070492 Msa0166070:CDS
ACTGGAGGCTTTGGCACAAT+AGG 0.424191 1_4:+47071140 Msa0166070:three_prime_UTR
CCCAAGGCTTGAGGGAGTTA+TGG 0.427374 1_4:+47070954 Msa0166070:exon
ATAAGACATGCCCATGGGTT+AGG 0.433400 1_4:+47070265 Msa0166070:CDS
GGTGATCAAGGTCACATGTT+TGG 0.433876 1_4:+47070153 Msa0166070:CDS
ACCATAACTCCCTCAAGCCT+TGG 0.434421 1_4:-47070955 None:intergenic
TATGGTGGTTGGGGTGCTCA+TGG 0.437298 1_4:+47070567 Msa0166070:CDS
CTTTCTAACTTCAGTGAGCT+TGG 0.438150 1_4:-47070241 None:intergenic
GGTTGGATCCTTTCCTGAGA+AGG 0.441186 1_4:-47070598 None:intergenic
TGCTCAAGCCCAAGGCTTGA+GGG 0.445480 1_4:+47070946 Msa0166070:CDS
ATCTTCCATCTCAACCCTTC+AGG 0.447635 1_4:+47070477 Msa0166070:CDS
TTTCAGCTTAGATGAGAAAT+GGG 0.447738 1_4:+47071090 Msa0166070:three_prime_UTR
ACAGTCTCCCATGTAAAATC+AGG 0.452392 1_4:-47070918 None:intergenic
CGTCGTGTTGAGTTGAAATG+AGG 0.453932 1_4:-47070365 None:intergenic
TCACCAGCTCCAATTTCCTC+AGG 0.463353 1_4:-47070135 None:intergenic
TGTGTGAGTGGCATTAGTTC+AGG 0.465165 1_4:-47070195 None:intergenic
TACCAGAAGACTGCTGCTTA+CGG 0.467085 1_4:+47070876 Msa0166070:CDS
CATGGAGATGCGGGGCTCAC+CGG 0.468853 1_4:+47070522 Msa0166070:CDS
CCATAACTCCCTCAAGCCTT+GGG 0.475898 1_4:-47070954 None:intergenic
GGTGGACCTCATGGAGATGC+GGG 0.478920 1_4:+47070513 Msa0166070:CDS
GAAATTGGAGCTGGTGATCA+AGG 0.483468 1_4:+47070141 Msa0166070:CDS
TGCCACCTCTTGTGAGGTCA+AGG 0.490427 1_4:-47070845 None:intergenic
GAATTATTTCCTTTGCATAG+TGG 0.495266 1_4:+47069615 Msa0166070:CDS
AGGTTGATAGCAATCATTCC+AGG 0.495973 1_4:-47070825 None:intergenic
TGCCATCCTTGATGCATGCT+TGG 0.499134 1_4:+47069867 Msa0166070:CDS
AGGTATTTAGCTGGGACGAC+AGG 0.499951 1_4:-47070441 None:intergenic
AACTGGAAAGATTCCAGATA+AGG 0.500009 1_4:+47070764 Msa0166070:CDS
GGGTTTGTGTCTGCTGATGT+TGG 0.504850 1_4:+47070021 Msa0166070:CDS
AGTAAAATCAAAATCAAAAG+TGG 0.506240 1_4:-47071181 None:intergenic
CCACTCCGGTCCACCTTGGT+TGG 0.509411 1_4:-47070615 None:intergenic
TGCCCATGGGTTAGGCCTGA+TGG 0.510007 1_4:+47070273 Msa0166070:CDS
CAAGGATGGCATCTGAAACC+TGG 0.510900 1_4:-47069855 None:intergenic
TTATTGATACCTATGGTGGT+TGG 0.512065 1_4:+47070556 Msa0166070:CDS
AAGATCATTATTGATACCTA+TGG 0.514480 1_4:+47070549 Msa0166070:CDS
TCAAAAGTGGTAGCTAATGT+TGG 0.517595 1_4:-47071168 None:intergenic
GTGCTCTCCTAGGTGTGGAC+TGG 0.521156 1_4:+47071122 Msa0166070:three_prime_UTR
CTCTCCTAGGTGTGGACTGG+AGG 0.524081 1_4:+47071125 Msa0166070:three_prime_UTR
CTTGTATTCAACGGTAACTT+GGG 0.524167 1_4:-47070301 None:intergenic
GTAACTTGGGTCTTACCATC+AGG 0.526446 1_4:-47070288 None:intergenic
ATTGATACCTATGGTGGTTG+GGG 0.527612 1_4:+47070558 Msa0166070:CDS
ATGCTCAAGCCCAAGGCTTG+AGG 0.527948 1_4:+47070945 Msa0166070:CDS
AGGATCCAACCAAGGTGGAC+CGG 0.528683 1_4:+47070610 Msa0166070:CDS
ATTATCATTCTTGTATTCAA+CGG 0.531052 1_4:-47070310 None:intergenic
GATATTGCTCAAGGAGTTCA+CGG 0.536055 1_4:+47070096 Msa0166070:CDS
CCCCGACAAGATCTGTGACC+AGG 0.538168 1_4:+47069837 Msa0166070:CDS
GAGCAGATATGTGCTCTCCT+AGG 0.540940 1_4:+47071112 Msa0166070:three_prime_UTR
TAGTTCAGGTGTTTCGTCAG+TGG 0.542460 1_4:-47070181 None:intergenic
TTTGTGATTGGTGGACCTCA+TGG 0.544583 1_4:+47070504 Msa0166070:CDS
TACCATCAGGCCTAACCCAT+GGG 0.547526 1_4:-47070275 None:intergenic
TGTCGTCAAGGTATTTAGCT+GGG 0.547725 1_4:-47070449 None:intergenic
TCGCAACCGACTTGTGTGGT+TGG 0.549227 1_4:+47071262 Msa0166070:three_prime_UTR
ACCTACCTGAAGGGTTGAGA+TGG 0.549506 1_4:-47070482 None:intergenic
TGGTGGACCTCATGGAGATG+CGG 0.558868 1_4:+47070512 Msa0166070:CDS
CATCAGAAACTACAGCCAGC+AGG 0.559940 1_4:-47071364 None:intergenic
GGTGGTTGGGGTGCTCATGG+TGG 0.563645 1_4:+47070570 Msa0166070:CDS
TGAAGGGTTGAGATGGAAGA+TGG 0.563688 1_4:-47070475 None:intergenic
AACCTGGTCACAGATCTTGT+CGG 0.563707 1_4:-47069839 None:intergenic
AAGCCTGAGGAAATTGGAGC+TGG 0.569064 1_4:+47070132 Msa0166070:CDS
CTCCAAGCATGCATCAAGGA+TGG 0.575330 1_4:-47069869 None:intergenic
ATCATTATTGATACCTATGG+TGG 0.575435 1_4:+47070552 Msa0166070:CDS
ATGAGCACCCCAACCACCAT+AGG 0.575628 1_4:-47070565 None:intergenic
CAAGAATGATAATGGAGCCA+TGG 0.577331 1_4:+47070320 Msa0166070:CDS
GGAAGATGGTCTTGTCGTCA+AGG 0.577435 1_4:-47070461 None:intergenic
TTACCATCAGGCCTAACCCA+TGG 0.578836 1_4:-47070276 None:intergenic
TGTGAAGATGCTCAAGCCCA+AGG 0.581845 1_4:+47070938 Msa0166070:CDS
GAGATGCGGGGCTCACCGGA+AGG 0.589190 1_4:+47070526 Msa0166070:CDS
ACCTTCGTTTACAGATTCTG+AGG 0.589403 1_4:-47069812 None:intergenic
TGAAATCACAACCAAGGCAA+AGG 0.590046 1_4:+47069957 Msa0166070:CDS
CCAATCACAAACCTACCTGA+AGG 0.592190 1_4:-47070492 None:intergenic
AGCACCACTCCGGTCCACCT+TGG 0.593221 1_4:-47070619 None:intergenic
AACCTTGACCTCACAAGAGG+TGG 0.593643 1_4:+47070843 Msa0166070:CDS
GGAGCAAGATAAAGAGAGCA+AGG 0.594380 1_4:+47069888 Msa0166070:CDS
AATCACAACCAAGGCAAAGG+TGG 0.598400 1_4:+47069960 Msa0166070:CDS
TGAATTTGCCACCTCTTGTG+AGG 0.598537 1_4:-47070851 None:intergenic
CAGAGCCCTGATATTGCTCA+AGG 0.602611 1_4:+47070087 Msa0166070:CDS
CTTGCTCCAAGCATGCATCA+AGG 0.602878 1_4:-47069873 None:intergenic
TTTCTCGCAACCGACTTGTG+TGG 0.606583 1_4:+47071258 Msa0166070:three_prime_UTR
GAACTCCTTGAGCAATATCA+GGG 0.613163 1_4:-47070092 None:intergenic
GAAAGAATAAGACATGCCCA+TGG 0.616428 1_4:+47070259 Msa0166070:CDS
TGGAGGTGCCTTCTCAGGAA+AGG 0.621106 1_4:+47070590 Msa0166070:CDS
CAATCACAAACCTACCTGAA+GGG 0.630070 1_4:-47070491 None:intergenic
ATCAACCTTGACCTCACAAG+AGG 0.632107 1_4:+47070840 Msa0166070:CDS
GATATGTGCTCTCCTAGGTG+TGG 0.634071 1_4:+47071117 Msa0166070:three_prime_UTR
AGATTCTGAGGTGAATAGGA+AGG 0.635764 1_4:-47069800 None:intergenic
TTTACACCAACCACACAAGT+CGG 0.635772 1_4:-47071268 None:intergenic
TCCATCTCAACCCTTCAGGT+AGG 0.636963 1_4:+47070481 Msa0166070:CDS
AAAGAATAAGACATGCCCAT+GGG 0.640830 1_4:+47070260 Msa0166070:CDS
CCAACCAAGGTGGACCGGAG+TGG 0.648219 1_4:+47070615 Msa0166070:CDS
TAACAATGTAAGCACCACTC+CGG 0.649766 1_4:-47070629 None:intergenic
ACCTCAGAATCTGTAAACGA+AGG 0.651225 1_4:+47069811 Msa0166070:CDS
AAAGCCTCCAGTCCACACCT+AGG 0.665696 1_4:-47071129 None:intergenic
GTGGACCTCATGGAGATGCG+GGG 0.667986 1_4:+47070514 Msa0166070:CDS
GTGGCAAGCACATGTGTGAG+TGG 0.669118 1_4:-47070207 None:intergenic
CTCAGGAAAGGATCCAACCA+AGG 0.675495 1_4:+47070602 Msa0166070:CDS
CTTTGGTGAAATCACAACCA+AGG 0.678587 1_4:+47069951 Msa0166070:CDS
CTTACATTACCACTATGCAA+AGG 0.681295 1_4:-47069624 None:intergenic
TCACTTGAGCAAGAAGCCTG+AGG 0.682617 1_4:+47070119 Msa0166070:CDS
GTGCACGCGAATAGGGACCA+TGG 0.688328 1_4:-47070337 None:intergenic
GTGAGCCCCGCATCTCCATG+AGG 0.689929 1_4:-47070519 None:intergenic
AGGAAAGGATCCAACCAAGG+TGG 0.705983 1_4:+47070605 Msa0166070:CDS
CCTGGTCACAGATCTTGTCG+GGG 0.713673 1_4:-47069837 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTACAGAATTCATTA+GGG - chr1_4:47069391-47069410 None:intergenic 15.0%
!!! CAATAATATTTTGTTTGTTT+TGG + chr1_4:47069462-47069481 Msa0166070:five_prime_UTR 15.0%
!! TTTCAAATAATGTATATACT+CGG - chr1_4:47071057-47071076 None:intergenic 15.0%
!! AAATATTACAGAATTCATTA+GGG - chr1_4:47069391-47069410 None:intergenic 15.0%
!!! CAATAATATTTTGTTTGTTT+TGG + chr1_4:47069462-47069481 Msa0166070:five_prime_UTR 15.0%
!! TTTCAAATAATGTATATACT+CGG - chr1_4:47071057-47071076 None:intergenic 15.0%
!! CAAATATTACAGAATTCATT+AGG - chr1_4:47069392-47069411 None:intergenic 20.0%
!! ACATCTAATATATATACTCT+TGG + chr1_4:47069744-47069763 Msa0166070:intron 20.0%
!! ATTATCATTCTTGTATTCAA+CGG - chr1_4:47070313-47070332 None:intergenic 20.0%
!! AGTAAAATCAAAATCAAAAG+TGG - chr1_4:47071184-47071203 None:intergenic 20.0%
!! TTAAATTTCATTACTGTTAC+TGG + chr1_4:47071207-47071226 Msa0166070:three_prime_UTR 20.0%
!! AAAACTGCAACAAAAAAATA+GGG + chr1_4:47071388-47071407 Msa0166070:three_prime_UTR 20.0%
!! CAAATATTACAGAATTCATT+AGG - chr1_4:47069392-47069411 None:intergenic 20.0%
!! ACATCTAATATATATACTCT+TGG + chr1_4:47069744-47069763 Msa0166070:intron 20.0%
!! ATTATCATTCTTGTATTCAA+CGG - chr1_4:47070313-47070332 None:intergenic 20.0%
!! AGTAAAATCAAAATCAAAAG+TGG - chr1_4:47071184-47071203 None:intergenic 20.0%
!! TTAAATTTCATTACTGTTAC+TGG + chr1_4:47071207-47071226 Msa0166070:three_prime_UTR 20.0%
!! AAAACTGCAACAAAAAAATA+GGG + chr1_4:47071388-47071407 Msa0166070:three_prime_UTR 20.0%
! TACAAAAACTAACATGGTTA+TGG + chr1_4:47069927-47069946 Msa0166070:CDS 25.0%
! GTTGAATACAAGAATGATAA+TGG + chr1_4:47070312-47070331 Msa0166070:CDS 25.0%
! AAGATCATTATTGATACCTA+TGG + chr1_4:47070549-47070568 Msa0166070:CDS 25.0%
! GAAAACTGCAACAAAAAAAT+AGG + chr1_4:47071387-47071406 Msa0166070:three_prime_UTR 25.0%
! TACAAAAACTAACATGGTTA+TGG + chr1_4:47069927-47069946 Msa0166070:CDS 25.0%
! GTTGAATACAAGAATGATAA+TGG + chr1_4:47070312-47070331 Msa0166070:CDS 25.0%
! AAGATCATTATTGATACCTA+TGG + chr1_4:47070549-47070568 Msa0166070:CDS 25.0%
! GAAAACTGCAACAAAAAAAT+AGG + chr1_4:47071387-47071406 Msa0166070:three_prime_UTR 25.0%
!!! TGTTTTGGTAAACAAGAAGT+TGG + chr1_4:47069477-47069496 Msa0166070:five_prime_UTR 30.0%
!! CTTTTTAAGCAACAGATCAA+AGG + chr1_4:47069510-47069529 Msa0166070:five_prime_UTR 30.0%
! TAGCATTCAACACTTTCTTT+TGG + chr1_4:47069539-47069558 Msa0166070:five_prime_UTR 30.0%
! AGCATTCAACACTTTCTTTT+GGG + chr1_4:47069540-47069559 Msa0166070:five_prime_UTR 30.0%
GAATTATTTCCTTTGCATAG+TGG + chr1_4:47069615-47069634 Msa0166070:CDS 30.0%
!!! CTCTTGGTCTTATTCTTTTT+TGG + chr1_4:47069760-47069779 Msa0166070:intron 30.0%
!!! CTTTTTTGGAACATCAGATA+TGG + chr1_4:47069774-47069793 Msa0166070:intron 30.0%
!!! AACCATGTTAGTTTTTGTAC+AGG - chr1_4:47069926-47069945 None:intergenic 30.0%
ATCAATAATGATCTTCCTTC+CGG - chr1_4:47070544-47070563 None:intergenic 30.0%
ATCATTATTGATACCTATGG+TGG + chr1_4:47070552-47070571 Msa0166070:CDS 30.0%
! GATTCCAGATAAGGATATTT+TGG + chr1_4:47070773-47070792 Msa0166070:CDS 30.0%
AGAACCAAAATATCCTTATC+TGG - chr1_4:47070780-47070799 None:intergenic 30.0%
!!! GGATATTTTGGTTCTGATTA+AGG + chr1_4:47070785-47070804 Msa0166070:CDS 30.0%
!!! TTAAGGAGAATTTTGACTTC+AGG + chr1_4:47070802-47070821 Msa0166070:CDS 30.0%
GTAATCATCTTTCTGATTCT+GGG + chr1_4:47071005-47071024 Msa0166070:intron 30.0%
! TTTTCAGCTTAGATGAGAAA+TGG + chr1_4:47071089-47071108 Msa0166070:three_prime_UTR 30.0%
TTTCAGCTTAGATGAGAAAT+GGG + chr1_4:47071090-47071109 Msa0166070:three_prime_UTR 30.0%
! CATATAGAAAATTTTCCTGC+TGG + chr1_4:47071349-47071368 Msa0166070:three_prime_UTR 30.0%
!!! TGTTTTGGTAAACAAGAAGT+TGG + chr1_4:47069477-47069496 Msa0166070:five_prime_UTR 30.0%
!! CTTTTTAAGCAACAGATCAA+AGG + chr1_4:47069510-47069529 Msa0166070:five_prime_UTR 30.0%
! TAGCATTCAACACTTTCTTT+TGG + chr1_4:47069539-47069558 Msa0166070:five_prime_UTR 30.0%
! AGCATTCAACACTTTCTTTT+GGG + chr1_4:47069540-47069559 Msa0166070:five_prime_UTR 30.0%
GAATTATTTCCTTTGCATAG+TGG + chr1_4:47069615-47069634 Msa0166070:CDS 30.0%
!!! CTCTTGGTCTTATTCTTTTT+TGG + chr1_4:47069760-47069779 Msa0166070:intron 30.0%
!!! CTTTTTTGGAACATCAGATA+TGG + chr1_4:47069774-47069793 Msa0166070:intron 30.0%
!!! AACCATGTTAGTTTTTGTAC+AGG - chr1_4:47069926-47069945 None:intergenic 30.0%
ATCAATAATGATCTTCCTTC+CGG - chr1_4:47070544-47070563 None:intergenic 30.0%
ATCATTATTGATACCTATGG+TGG + chr1_4:47070552-47070571 Msa0166070:CDS 30.0%
! GATTCCAGATAAGGATATTT+TGG + chr1_4:47070773-47070792 Msa0166070:CDS 30.0%
AGAACCAAAATATCCTTATC+TGG - chr1_4:47070780-47070799 None:intergenic 30.0%
!!! GGATATTTTGGTTCTGATTA+AGG + chr1_4:47070785-47070804 Msa0166070:CDS 30.0%
!!! TTAAGGAGAATTTTGACTTC+AGG + chr1_4:47070802-47070821 Msa0166070:CDS 30.0%
GTAATCATCTTTCTGATTCT+GGG + chr1_4:47071005-47071024 Msa0166070:intron 30.0%
! TTTTCAGCTTAGATGAGAAA+TGG + chr1_4:47071089-47071108 Msa0166070:three_prime_UTR 30.0%
TTTCAGCTTAGATGAGAAAT+GGG + chr1_4:47071090-47071109 Msa0166070:three_prime_UTR 30.0%
! CATATAGAAAATTTTCCTGC+TGG + chr1_4:47071349-47071368 Msa0166070:three_prime_UTR 30.0%
! ATTCAACACTTTCTTTTGGG+CGG + chr1_4:47069543-47069562 Msa0166070:five_prime_UTR 35.0%
CTTACATTACCACTATGCAA+AGG - chr1_4:47069627-47069646 None:intergenic 35.0%
! CAACTGACTACAGATTTTGA+AGG - chr1_4:47069705-47069724 None:intergenic 35.0%
!! TTACAGATTCTGAGGTGAAT+AGG - chr1_4:47069807-47069826 None:intergenic 35.0%
GACCTGTACAAAAACTAACA+TGG + chr1_4:47069921-47069940 Msa0166070:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG + chr1_4:47069934-47069953 Msa0166070:CDS 35.0%
AAAGAATAAGACATGCCCAT+GGG + chr1_4:47070260-47070279 Msa0166070:CDS 35.0%
CTTGTATTCAACGGTAACTT+GGG - chr1_4:47070304-47070323 None:intergenic 35.0%
TCTTGTATTCAACGGTAACT+TGG - chr1_4:47070305-47070324 None:intergenic 35.0%
TTATTGATACCTATGGTGGT+TGG + chr1_4:47070556-47070575 Msa0166070:CDS 35.0%
TATTGATACCTATGGTGGTT+GGG + chr1_4:47070557-47070576 Msa0166070:CDS 35.0%
TTTGTGGACACTTACAAAAC+TGG + chr1_4:47070747-47070766 Msa0166070:CDS 35.0%
AACTGGAAAGATTCCAGATA+AGG + chr1_4:47070764-47070783 Msa0166070:CDS 35.0%
! TGACGATCCTGATTTTACAT+GGG + chr1_4:47070911-47070930 Msa0166070:CDS 35.0%
! AGTTATGGTATTTTCAGAGG+TGG + chr1_4:47070969-47070988 Msa0166070:three_prime_UTR 35.0%
!! CAGAGGTGGTTATTTTATCA+TGG + chr1_4:47070983-47071002 Msa0166070:three_prime_UTR 35.0%
GGTAATCATCTTTCTGATTC+TGG + chr1_4:47071004-47071023 Msa0166070:intron 35.0%
TCAAAAGTGGTAGCTAATGT+TGG - chr1_4:47071171-47071190 None:intergenic 35.0%
! ATTCAACACTTTCTTTTGGG+CGG + chr1_4:47069543-47069562 Msa0166070:five_prime_UTR 35.0%
CTTACATTACCACTATGCAA+AGG - chr1_4:47069627-47069646 None:intergenic 35.0%
! CAACTGACTACAGATTTTGA+AGG - chr1_4:47069705-47069724 None:intergenic 35.0%
!! TTACAGATTCTGAGGTGAAT+AGG - chr1_4:47069807-47069826 None:intergenic 35.0%
GACCTGTACAAAAACTAACA+TGG + chr1_4:47069921-47069940 Msa0166070:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG + chr1_4:47069934-47069953 Msa0166070:CDS 35.0%
AAAGAATAAGACATGCCCAT+GGG + chr1_4:47070260-47070279 Msa0166070:CDS 35.0%
CTTGTATTCAACGGTAACTT+GGG - chr1_4:47070304-47070323 None:intergenic 35.0%
TCTTGTATTCAACGGTAACT+TGG - chr1_4:47070305-47070324 None:intergenic 35.0%
TTATTGATACCTATGGTGGT+TGG + chr1_4:47070556-47070575 Msa0166070:CDS 35.0%
TATTGATACCTATGGTGGTT+GGG + chr1_4:47070557-47070576 Msa0166070:CDS 35.0%
TTTGTGGACACTTACAAAAC+TGG + chr1_4:47070747-47070766 Msa0166070:CDS 35.0%
AACTGGAAAGATTCCAGATA+AGG + chr1_4:47070764-47070783 Msa0166070:CDS 35.0%
! TGACGATCCTGATTTTACAT+GGG + chr1_4:47070911-47070930 Msa0166070:CDS 35.0%
! AGTTATGGTATTTTCAGAGG+TGG + chr1_4:47070969-47070988 Msa0166070:three_prime_UTR 35.0%
!! CAGAGGTGGTTATTTTATCA+TGG + chr1_4:47070983-47071002 Msa0166070:three_prime_UTR 35.0%
GGTAATCATCTTTCTGATTC+TGG + chr1_4:47071004-47071023 Msa0166070:intron 35.0%
TCAAAAGTGGTAGCTAATGT+TGG - chr1_4:47071171-47071190 None:intergenic 35.0%
! TTCAACACTTTCTTTTGGGC+GGG + chr1_4:47069544-47069563 Msa0166070:five_prime_UTR 40.0%
!! AGATTCTGAGGTGAATAGGA+AGG - chr1_4:47069803-47069822 None:intergenic 40.0%
ACCTCAGAATCTGTAAACGA+AGG + chr1_4:47069811-47069830 Msa0166070:CDS 40.0%
ACCTTCGTTTACAGATTCTG+AGG - chr1_4:47069815-47069834 None:intergenic 40.0%
CTTTGGTGAAATCACAACCA+AGG + chr1_4:47069951-47069970 Msa0166070:CDS 40.0%
TGAAATCACAACCAAGGCAA+AGG + chr1_4:47069957-47069976 Msa0166070:CDS 40.0%
AAATAGTTCGTGACACTTGC+AGG + chr1_4:47069992-47070011 Msa0166070:CDS 40.0%
GAACTCCTTGAGCAATATCA+GGG - chr1_4:47070095-47070114 None:intergenic 40.0%
TGAACTCCTTGAGCAATATC+AGG - chr1_4:47070096-47070115 None:intergenic 40.0%
GATATTGCTCAAGGAGTTCA+CGG + chr1_4:47070096-47070115 Msa0166070:CDS 40.0%
CATGTGCTTGCCACTAAAAT+TGG + chr1_4:47070216-47070235 Msa0166070:CDS 40.0%
CTTTCTAACTTCAGTGAGCT+TGG - chr1_4:47070244-47070263 None:intergenic 40.0%
GAAAGAATAAGACATGCCCA+TGG + chr1_4:47070259-47070278 Msa0166070:CDS 40.0%
!! CAAGAATGATAATGGAGCCA+TGG + chr1_4:47070320-47070339 Msa0166070:CDS 40.0%
! TGTCGTCAAGGTATTTAGCT+GGG - chr1_4:47070452-47070471 None:intergenic 40.0%
! TTGTCGTCAAGGTATTTAGC+TGG - chr1_4:47070453-47070472 None:intergenic 40.0%
CAATCACAAACCTACCTGAA+GGG - chr1_4:47070494-47070513 None:intergenic 40.0%
ATTGATACCTATGGTGGTTG+GGG + chr1_4:47070558-47070577 Msa0166070:CDS 40.0%
TAACAATGTAAGCACCACTC+CGG - chr1_4:47070632-47070651 None:intergenic 40.0%
!! CAAAAAGTGTTGTCGCTTCA+GGG + chr1_4:47070661-47070680 Msa0166070:CDS 40.0%
GTGCAGGTTTCTTATGCAAT+TGG + chr1_4:47070702-47070721 Msa0166070:CDS 40.0%
ACAAAAACAGAAAGTGGCTC+TGG - chr1_4:47070732-47070751 None:intergenic 40.0%
!!! AGAGCCACTTTCTGTTTTTG+TGG + chr1_4:47070731-47070750 Msa0166070:CDS 40.0%
GTGTCCACAAAAACAGAAAG+TGG - chr1_4:47070738-47070757 None:intergenic 40.0%
!! AGGTTGATAGCAATCATTCC+AGG - chr1_4:47070828-47070847 None:intergenic 40.0%
! GTGACGATCCTGATTTTACA+TGG + chr1_4:47070910-47070929 Msa0166070:CDS 40.0%
ACAGTCTCCCATGTAAAATC+AGG - chr1_4:47070921-47070940 None:intergenic 40.0%
! GGGAGTTATGGTATTTTCAG+AGG + chr1_4:47070966-47070985 Msa0166070:three_prime_UTR 40.0%
TTTACACCAACCACACAAGT+CGG - chr1_4:47071271-47071290 None:intergenic 40.0%
! TTCAACACTTTCTTTTGGGC+GGG + chr1_4:47069544-47069563 Msa0166070:five_prime_UTR 40.0%
!! AGATTCTGAGGTGAATAGGA+AGG - chr1_4:47069803-47069822 None:intergenic 40.0%
ACCTCAGAATCTGTAAACGA+AGG + chr1_4:47069811-47069830 Msa0166070:CDS 40.0%
ACCTTCGTTTACAGATTCTG+AGG - chr1_4:47069815-47069834 None:intergenic 40.0%
CTTTGGTGAAATCACAACCA+AGG + chr1_4:47069951-47069970 Msa0166070:CDS 40.0%
TGAAATCACAACCAAGGCAA+AGG + chr1_4:47069957-47069976 Msa0166070:CDS 40.0%
AAATAGTTCGTGACACTTGC+AGG + chr1_4:47069992-47070011 Msa0166070:CDS 40.0%
GAACTCCTTGAGCAATATCA+GGG - chr1_4:47070095-47070114 None:intergenic 40.0%
TGAACTCCTTGAGCAATATC+AGG - chr1_4:47070096-47070115 None:intergenic 40.0%
GATATTGCTCAAGGAGTTCA+CGG + chr1_4:47070096-47070115 Msa0166070:CDS 40.0%
CATGTGCTTGCCACTAAAAT+TGG + chr1_4:47070216-47070235 Msa0166070:CDS 40.0%
CTTTCTAACTTCAGTGAGCT+TGG - chr1_4:47070244-47070263 None:intergenic 40.0%
GAAAGAATAAGACATGCCCA+TGG + chr1_4:47070259-47070278 Msa0166070:CDS 40.0%
!! CAAGAATGATAATGGAGCCA+TGG + chr1_4:47070320-47070339 Msa0166070:CDS 40.0%
! TGTCGTCAAGGTATTTAGCT+GGG - chr1_4:47070452-47070471 None:intergenic 40.0%
! TTGTCGTCAAGGTATTTAGC+TGG - chr1_4:47070453-47070472 None:intergenic 40.0%
CAATCACAAACCTACCTGAA+GGG - chr1_4:47070494-47070513 None:intergenic 40.0%
ATTGATACCTATGGTGGTTG+GGG + chr1_4:47070558-47070577 Msa0166070:CDS 40.0%
TAACAATGTAAGCACCACTC+CGG - chr1_4:47070632-47070651 None:intergenic 40.0%
!! CAAAAAGTGTTGTCGCTTCA+GGG + chr1_4:47070661-47070680 Msa0166070:CDS 40.0%
GTGCAGGTTTCTTATGCAAT+TGG + chr1_4:47070702-47070721 Msa0166070:CDS 40.0%
ACAAAAACAGAAAGTGGCTC+TGG - chr1_4:47070732-47070751 None:intergenic 40.0%
!!! AGAGCCACTTTCTGTTTTTG+TGG + chr1_4:47070731-47070750 Msa0166070:CDS 40.0%
GTGTCCACAAAAACAGAAAG+TGG - chr1_4:47070738-47070757 None:intergenic 40.0%
!! AGGTTGATAGCAATCATTCC+AGG - chr1_4:47070828-47070847 None:intergenic 40.0%
! GTGACGATCCTGATTTTACA+TGG + chr1_4:47070910-47070929 Msa0166070:CDS 40.0%
ACAGTCTCCCATGTAAAATC+AGG - chr1_4:47070921-47070940 None:intergenic 40.0%
! GGGAGTTATGGTATTTTCAG+AGG + chr1_4:47070966-47070985 Msa0166070:three_prime_UTR 40.0%
TTTACACCAACCACACAAGT+CGG - chr1_4:47071271-47071290 None:intergenic 40.0%
! TCAACACTTTCTTTTGGGCG+GGG + chr1_4:47069545-47069564 Msa0166070:five_prime_UTR 45.0%
AACCTGGTCACAGATCTTGT+CGG - chr1_4:47069842-47069861 None:intergenic 45.0%
GGAGCAAGATAAAGAGAGCA+AGG + chr1_4:47069888-47069907 Msa0166070:CDS 45.0%
! AGTTTTTGTACAGGTCTCGC+AGG - chr1_4:47069917-47069936 None:intergenic 45.0%
AATCACAACCAAGGCAAAGG+TGG + chr1_4:47069960-47069979 Msa0166070:CDS 45.0%
!! GTGACACTTGCAGGAGTATT+GGG + chr1_4:47070001-47070020 Msa0166070:CDS 45.0%
AGCAAGAAGCCTGAGGAAAT+TGG + chr1_4:47070126-47070145 Msa0166070:CDS 45.0%
GAAATTGGAGCTGGTGATCA+AGG + chr1_4:47070141-47070160 Msa0166070:CDS 45.0%
GGTGATCAAGGTCACATGTT+TGG + chr1_4:47070153-47070172 Msa0166070:CDS 45.0%
TAGTTCAGGTGTTTCGTCAG+TGG - chr1_4:47070184-47070203 None:intergenic 45.0%
TGTGTGAGTGGCATTAGTTC+AGG - chr1_4:47070198-47070217 None:intergenic 45.0%
! GAGCTTGGCACCAATTTTAG+TGG - chr1_4:47070229-47070248 None:intergenic 45.0%
ATAAGACATGCCCATGGGTT+AGG + chr1_4:47070265-47070284 Msa0166070:CDS 45.0%
GTAACTTGGGTCTTACCATC+AGG - chr1_4:47070291-47070310 None:intergenic 45.0%
!! CGTCGTGTTGAGTTGAAATG+AGG - chr1_4:47070368-47070387 None:intergenic 45.0%
TGAAGGGTTGAGATGGAAGA+TGG - chr1_4:47070478-47070497 None:intergenic 45.0%
ATCTTCCATCTCAACCCTTC+AGG + chr1_4:47070477-47070496 Msa0166070:CDS 45.0%
CCAATCACAAACCTACCTGA+AGG - chr1_4:47070495-47070514 None:intergenic 45.0%
CCTTCAGGTAGGTTTGTGAT+TGG + chr1_4:47070492-47070511 Msa0166070:CDS 45.0%
TCAGGTAGGTTTGTGATTGG+TGG + chr1_4:47070495-47070514 Msa0166070:CDS 45.0%
! TTTGTGATTGGTGGACCTCA+TGG + chr1_4:47070504-47070523 Msa0166070:CDS 45.0%
GGAGTGGTGCTTACATTGTT+AGG + chr1_4:47070631-47070650 Msa0166070:CDS 45.0%
!! GCAAAAAGTGTTGTCGCTTC+AGG + chr1_4:47070660-47070679 Msa0166070:CDS 45.0%
!!! GAGAATTTTGACTTCAGGCC+TGG + chr1_4:47070807-47070826 Msa0166070:CDS 45.0%
ATCAACCTTGACCTCACAAG+AGG + chr1_4:47070840-47070859 Msa0166070:CDS 45.0%
TGAATTTGCCACCTCTTGTG+AGG - chr1_4:47070854-47070873 None:intergenic 45.0%
TCACAAGAGGTGGCAAATTC+AGG + chr1_4:47070853-47070872 Msa0166070:CDS 45.0%
! TACCAGAAGACTGCTGCTTA+CGG + chr1_4:47070876-47070895 Msa0166070:CDS 45.0%
! TCAACACTTTCTTTTGGGCG+GGG + chr1_4:47069545-47069564 Msa0166070:five_prime_UTR 45.0%
AACCTGGTCACAGATCTTGT+CGG - chr1_4:47069842-47069861 None:intergenic 45.0%
GGAGCAAGATAAAGAGAGCA+AGG + chr1_4:47069888-47069907 Msa0166070:CDS 45.0%
! AGTTTTTGTACAGGTCTCGC+AGG - chr1_4:47069917-47069936 None:intergenic 45.0%
AATCACAACCAAGGCAAAGG+TGG + chr1_4:47069960-47069979 Msa0166070:CDS 45.0%
!! GTGACACTTGCAGGAGTATT+GGG + chr1_4:47070001-47070020 Msa0166070:CDS 45.0%
AGCAAGAAGCCTGAGGAAAT+TGG + chr1_4:47070126-47070145 Msa0166070:CDS 45.0%
GAAATTGGAGCTGGTGATCA+AGG + chr1_4:47070141-47070160 Msa0166070:CDS 45.0%
GGTGATCAAGGTCACATGTT+TGG + chr1_4:47070153-47070172 Msa0166070:CDS 45.0%
TAGTTCAGGTGTTTCGTCAG+TGG - chr1_4:47070184-47070203 None:intergenic 45.0%
TGTGTGAGTGGCATTAGTTC+AGG - chr1_4:47070198-47070217 None:intergenic 45.0%
! GAGCTTGGCACCAATTTTAG+TGG - chr1_4:47070229-47070248 None:intergenic 45.0%
ATAAGACATGCCCATGGGTT+AGG + chr1_4:47070265-47070284 Msa0166070:CDS 45.0%
GTAACTTGGGTCTTACCATC+AGG - chr1_4:47070291-47070310 None:intergenic 45.0%
!! CGTCGTGTTGAGTTGAAATG+AGG - chr1_4:47070368-47070387 None:intergenic 45.0%
TGAAGGGTTGAGATGGAAGA+TGG - chr1_4:47070478-47070497 None:intergenic 45.0%
ATCTTCCATCTCAACCCTTC+AGG + chr1_4:47070477-47070496 Msa0166070:CDS 45.0%
CCAATCACAAACCTACCTGA+AGG - chr1_4:47070495-47070514 None:intergenic 45.0%
CCTTCAGGTAGGTTTGTGAT+TGG + chr1_4:47070492-47070511 Msa0166070:CDS 45.0%
TCAGGTAGGTTTGTGATTGG+TGG + chr1_4:47070495-47070514 Msa0166070:CDS 45.0%
! TTTGTGATTGGTGGACCTCA+TGG + chr1_4:47070504-47070523 Msa0166070:CDS 45.0%
GGAGTGGTGCTTACATTGTT+AGG + chr1_4:47070631-47070650 Msa0166070:CDS 45.0%
!! GCAAAAAGTGTTGTCGCTTC+AGG + chr1_4:47070660-47070679 Msa0166070:CDS 45.0%
!!! GAGAATTTTGACTTCAGGCC+TGG + chr1_4:47070807-47070826 Msa0166070:CDS 45.0%
ATCAACCTTGACCTCACAAG+AGG + chr1_4:47070840-47070859 Msa0166070:CDS 45.0%
TGAATTTGCCACCTCTTGTG+AGG - chr1_4:47070854-47070873 None:intergenic 45.0%
TCACAAGAGGTGGCAAATTC+AGG + chr1_4:47070853-47070872 Msa0166070:CDS 45.0%
! TACCAGAAGACTGCTGCTTA+CGG + chr1_4:47070876-47070895 Msa0166070:CDS 45.0%
! CAACACTTTCTTTTGGGCGG+GGG + chr1_4:47069546-47069565 Msa0166070:five_prime_UTR 50.0%
! AACACTTTCTTTTGGGCGGG+GGG + chr1_4:47069547-47069566 Msa0166070:five_prime_UTR 50.0%
ACCTGGTCACAGATCTTGTC+GGG - chr1_4:47069841-47069860 None:intergenic 50.0%
! CAAGGATGGCATCTGAAACC+TGG - chr1_4:47069858-47069877 None:intergenic 50.0%
TGCCATCCTTGATGCATGCT+TGG + chr1_4:47069867-47069886 Msa0166070:CDS 50.0%
CTCCAAGCATGCATCAAGGA+TGG - chr1_4:47069872-47069891 None:intergenic 50.0%
CTTGCTCCAAGCATGCATCA+AGG - chr1_4:47069876-47069895 None:intergenic 50.0%
CTCATAGTCCACCTTTGCCT+TGG - chr1_4:47069971-47069990 None:intergenic 50.0%
! CGTGACACTTGCAGGAGTAT+TGG + chr1_4:47070000-47070019 Msa0166070:CDS 50.0%
GGGTTTGTGTCTGCTGATGT+TGG + chr1_4:47070021-47070040 Msa0166070:CDS 50.0%
CAGAGCCCTGATATTGCTCA+AGG + chr1_4:47070087-47070106 Msa0166070:CDS 50.0%
TCACTTGAGCAAGAAGCCTG+AGG + chr1_4:47070119-47070138 Msa0166070:CDS 50.0%
AAGCCTGAGGAAATTGGAGC+TGG + chr1_4:47070132-47070151 Msa0166070:CDS 50.0%
TCACCAGCTCCAATTTCCTC+AGG - chr1_4:47070138-47070157 None:intergenic 50.0%
TACCATCAGGCCTAACCCAT+GGG - chr1_4:47070278-47070297 None:intergenic 50.0%
TTACCATCAGGCCTAACCCA+TGG - chr1_4:47070279-47070298 None:intergenic 50.0%
GGATTGTGTGCACGCGAATA+GGG - chr1_4:47070347-47070366 None:intergenic 50.0%
AGGATTGTGTGCACGCGAAT+AGG - chr1_4:47070348-47070367 None:intergenic 50.0%
AGGTATTTAGCTGGGACGAC+AGG - chr1_4:47070444-47070463 None:intergenic 50.0%
!! GGAAGATGGTCTTGTCGTCA+AGG - chr1_4:47070464-47070483 None:intergenic 50.0%
TCCATCTCAACCCTTCAGGT+AGG + chr1_4:47070481-47070500 Msa0166070:CDS 50.0%
ACCTACCTGAAGGGTTGAGA+TGG - chr1_4:47070485-47070504 None:intergenic 50.0%
GGTTGGATCCTTTCCTGAGA+AGG - chr1_4:47070601-47070620 None:intergenic 50.0%
CTCAGGAAAGGATCCAACCA+AGG + chr1_4:47070602-47070621 Msa0166070:CDS 50.0%
AGGAAAGGATCCAACCAAGG+TGG + chr1_4:47070605-47070624 Msa0166070:CDS 50.0%
TGCTCGTCGTTGTATTGTGC+AGG + chr1_4:47070686-47070705 Msa0166070:CDS 50.0%
AACCTTGACCTCACAAGAGG+TGG + chr1_4:47070843-47070862 Msa0166070:CDS 50.0%
! ACCAGAAGACTGCTGCTTAC+GGG + chr1_4:47070877-47070896 Msa0166070:CDS 50.0%
!! ACTGCTGCTTACGGGCATTT+TGG + chr1_4:47070885-47070904 Msa0166070:CDS 50.0%
TGTGAAGATGCTCAAGCCCA+AGG + chr1_4:47070938-47070957 Msa0166070:CDS 50.0%
CCATAACTCCCTCAAGCCTT+GGG - chr1_4:47070957-47070976 None:intergenic 50.0%
ACCATAACTCCCTCAAGCCT+TGG - chr1_4:47070958-47070977 None:intergenic 50.0%
GAGCAGATATGTGCTCTCCT+AGG + chr1_4:47071112-47071131 Msa0166070:three_prime_UTR 50.0%
GATATGTGCTCTCCTAGGTG+TGG + chr1_4:47071117-47071136 Msa0166070:three_prime_UTR 50.0%
! ACTGGAGGCTTTGGCACAAT+AGG + chr1_4:47071140-47071159 Msa0166070:three_prime_UTR 50.0%
!! TTTCTCGCAACCGACTTGTG+TGG + chr1_4:47071258-47071277 Msa0166070:three_prime_UTR 50.0%
CATCAGAAACTACAGCCAGC+AGG - chr1_4:47071367-47071386 None:intergenic 50.0%
! CTGCTGGCTGTAGTTTCTGA+TGG + chr1_4:47071365-47071384 Msa0166070:three_prime_UTR 50.0%
! CAACACTTTCTTTTGGGCGG+GGG + chr1_4:47069546-47069565 Msa0166070:five_prime_UTR 50.0%
! AACACTTTCTTTTGGGCGGG+GGG + chr1_4:47069547-47069566 Msa0166070:five_prime_UTR 50.0%
ACCTGGTCACAGATCTTGTC+GGG - chr1_4:47069841-47069860 None:intergenic 50.0%
! CAAGGATGGCATCTGAAACC+TGG - chr1_4:47069858-47069877 None:intergenic 50.0%
TGCCATCCTTGATGCATGCT+TGG + chr1_4:47069867-47069886 Msa0166070:CDS 50.0%
CTCCAAGCATGCATCAAGGA+TGG - chr1_4:47069872-47069891 None:intergenic 50.0%
CTTGCTCCAAGCATGCATCA+AGG - chr1_4:47069876-47069895 None:intergenic 50.0%
CTCATAGTCCACCTTTGCCT+TGG - chr1_4:47069971-47069990 None:intergenic 50.0%
! CGTGACACTTGCAGGAGTAT+TGG + chr1_4:47070000-47070019 Msa0166070:CDS 50.0%
GGGTTTGTGTCTGCTGATGT+TGG + chr1_4:47070021-47070040 Msa0166070:CDS 50.0%
CAGAGCCCTGATATTGCTCA+AGG + chr1_4:47070087-47070106 Msa0166070:CDS 50.0%
TCACTTGAGCAAGAAGCCTG+AGG + chr1_4:47070119-47070138 Msa0166070:CDS 50.0%
AAGCCTGAGGAAATTGGAGC+TGG + chr1_4:47070132-47070151 Msa0166070:CDS 50.0%
TCACCAGCTCCAATTTCCTC+AGG - chr1_4:47070138-47070157 None:intergenic 50.0%
TACCATCAGGCCTAACCCAT+GGG - chr1_4:47070278-47070297 None:intergenic 50.0%
TTACCATCAGGCCTAACCCA+TGG - chr1_4:47070279-47070298 None:intergenic 50.0%
GGATTGTGTGCACGCGAATA+GGG - chr1_4:47070347-47070366 None:intergenic 50.0%
AGGATTGTGTGCACGCGAAT+AGG - chr1_4:47070348-47070367 None:intergenic 50.0%
AGGTATTTAGCTGGGACGAC+AGG - chr1_4:47070444-47070463 None:intergenic 50.0%
!! GGAAGATGGTCTTGTCGTCA+AGG - chr1_4:47070464-47070483 None:intergenic 50.0%
TCCATCTCAACCCTTCAGGT+AGG + chr1_4:47070481-47070500 Msa0166070:CDS 50.0%
ACCTACCTGAAGGGTTGAGA+TGG - chr1_4:47070485-47070504 None:intergenic 50.0%
GGTTGGATCCTTTCCTGAGA+AGG - chr1_4:47070601-47070620 None:intergenic 50.0%
CTCAGGAAAGGATCCAACCA+AGG + chr1_4:47070602-47070621 Msa0166070:CDS 50.0%
AGGAAAGGATCCAACCAAGG+TGG + chr1_4:47070605-47070624 Msa0166070:CDS 50.0%
TGCTCGTCGTTGTATTGTGC+AGG + chr1_4:47070686-47070705 Msa0166070:CDS 50.0%
AACCTTGACCTCACAAGAGG+TGG + chr1_4:47070843-47070862 Msa0166070:CDS 50.0%
! ACCAGAAGACTGCTGCTTAC+GGG + chr1_4:47070877-47070896 Msa0166070:CDS 50.0%
!! ACTGCTGCTTACGGGCATTT+TGG + chr1_4:47070885-47070904 Msa0166070:CDS 50.0%
TGTGAAGATGCTCAAGCCCA+AGG + chr1_4:47070938-47070957 Msa0166070:CDS 50.0%
CCATAACTCCCTCAAGCCTT+GGG - chr1_4:47070957-47070976 None:intergenic 50.0%
ACCATAACTCCCTCAAGCCT+TGG - chr1_4:47070958-47070977 None:intergenic 50.0%
GAGCAGATATGTGCTCTCCT+AGG + chr1_4:47071112-47071131 Msa0166070:three_prime_UTR 50.0%
GATATGTGCTCTCCTAGGTG+TGG + chr1_4:47071117-47071136 Msa0166070:three_prime_UTR 50.0%
! ACTGGAGGCTTTGGCACAAT+AGG + chr1_4:47071140-47071159 Msa0166070:three_prime_UTR 50.0%
!! TTTCTCGCAACCGACTTGTG+TGG + chr1_4:47071258-47071277 Msa0166070:three_prime_UTR 50.0%
CATCAGAAACTACAGCCAGC+AGG - chr1_4:47071367-47071386 None:intergenic 50.0%
! CTGCTGGCTGTAGTTTCTGA+TGG + chr1_4:47071365-47071384 Msa0166070:three_prime_UTR 50.0%
! TTTCTTTTGGGCGGGGGGTT+GGG + chr1_4:47069552-47069571 Msa0166070:five_prime_UTR 55.0%
CCTGGTCACAGATCTTGTCG+GGG - chr1_4:47069840-47069859 None:intergenic 55.0%
GTGGCAAGCACATGTGTGAG+TGG - chr1_4:47070210-47070229 None:intergenic 55.0%
! TGGTGGACCTCATGGAGATG+CGG + chr1_4:47070512-47070531 Msa0166070:CDS 55.0%
ATGAGCACCCCAACCACCAT+AGG - chr1_4:47070568-47070587 None:intergenic 55.0%
! TATGGTGGTTGGGGTGCTCA+TGG + chr1_4:47070567-47070586 Msa0166070:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG + chr1_4:47070590-47070609 Msa0166070:CDS 55.0%
AGGATCCAACCAAGGTGGAC+CGG + chr1_4:47070610-47070629 Msa0166070:CDS 55.0%
TGCCACCTCTTGTGAGGTCA+AGG - chr1_4:47070848-47070867 None:intergenic 55.0%
ATGCTCAAGCCCAAGGCTTG+AGG + chr1_4:47070945-47070964 Msa0166070:CDS 55.0%
TGCTCAAGCCCAAGGCTTGA+GGG + chr1_4:47070946-47070965 Msa0166070:CDS 55.0%
CCCAAGGCTTGAGGGAGTTA+TGG + chr1_4:47070954-47070973 Msa0166070:exon 55.0%
AAAGCCTCCAGTCCACACCT+AGG - chr1_4:47071132-47071151 None:intergenic 55.0%
!! TAGGTGTGGACTGGAGGCTT+TGG + chr1_4:47071131-47071150 Msa0166070:three_prime_UTR 55.0%
!! TCGCAACCGACTTGTGTGGT+TGG + chr1_4:47071262-47071281 Msa0166070:three_prime_UTR 55.0%
! TTTCTTTTGGGCGGGGGGTT+GGG + chr1_4:47069552-47069571 Msa0166070:five_prime_UTR 55.0%
CCTGGTCACAGATCTTGTCG+GGG - chr1_4:47069840-47069859 None:intergenic 55.0%
GTGGCAAGCACATGTGTGAG+TGG - chr1_4:47070210-47070229 None:intergenic 55.0%
! TGGTGGACCTCATGGAGATG+CGG + chr1_4:47070512-47070531 Msa0166070:CDS 55.0%
ATGAGCACCCCAACCACCAT+AGG - chr1_4:47070568-47070587 None:intergenic 55.0%
! TATGGTGGTTGGGGTGCTCA+TGG + chr1_4:47070567-47070586 Msa0166070:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG + chr1_4:47070590-47070609 Msa0166070:CDS 55.0%
AGGATCCAACCAAGGTGGAC+CGG + chr1_4:47070610-47070629 Msa0166070:CDS 55.0%
TGCCACCTCTTGTGAGGTCA+AGG - chr1_4:47070848-47070867 None:intergenic 55.0%
ATGCTCAAGCCCAAGGCTTG+AGG + chr1_4:47070945-47070964 Msa0166070:CDS 55.0%
TGCTCAAGCCCAAGGCTTGA+GGG + chr1_4:47070946-47070965 Msa0166070:CDS 55.0%
CCCAAGGCTTGAGGGAGTTA+TGG + chr1_4:47070954-47070973 Msa0166070:exon 55.0%
AAAGCCTCCAGTCCACACCT+AGG - chr1_4:47071132-47071151 None:intergenic 55.0%
!! TAGGTGTGGACTGGAGGCTT+TGG + chr1_4:47071131-47071150 Msa0166070:three_prime_UTR 55.0%
!! TCGCAACCGACTTGTGTGGT+TGG + chr1_4:47071262-47071281 Msa0166070:three_prime_UTR 55.0%
! CTTTCTTTTGGGCGGGGGGT+TGG + chr1_4:47069551-47069570 Msa0166070:five_prime_UTR 60.0%
! TTCTTTTGGGCGGGGGGTTG+GGG + chr1_4:47069553-47069572 Msa0166070:five_prime_UTR 60.0%
CCCCGACAAGATCTGTGACC+AGG + chr1_4:47069837-47069856 Msa0166070:CDS 60.0%
!! TGCCCATGGGTTAGGCCTGA+TGG + chr1_4:47070273-47070292 Msa0166070:CDS 60.0%
GTGCACGCGAATAGGGACCA+TGG - chr1_4:47070340-47070359 None:intergenic 60.0%
GGTGGACCTCATGGAGATGC+GGG + chr1_4:47070513-47070532 Msa0166070:CDS 60.0%
GTGGACCTCATGGAGATGCG+GGG + chr1_4:47070514-47070533 Msa0166070:CDS 60.0%
!! CATGGTGGAGGTGCCTTCTC+AGG + chr1_4:47070585-47070604 Msa0166070:CDS 60.0%
GCCCGTAAGCAGCAGTCTTC+TGG - chr1_4:47070881-47070900 None:intergenic 60.0%
GTGCTCTCCTAGGTGTGGAC+TGG + chr1_4:47071122-47071141 Msa0166070:three_prime_UTR 60.0%
!! CTCTCCTAGGTGTGGACTGG+AGG + chr1_4:47071125-47071144 Msa0166070:three_prime_UTR 60.0%
! CTTTCTTTTGGGCGGGGGGT+TGG + chr1_4:47069551-47069570 Msa0166070:five_prime_UTR 60.0%
! TTCTTTTGGGCGGGGGGTTG+GGG + chr1_4:47069553-47069572 Msa0166070:five_prime_UTR 60.0%
CCCCGACAAGATCTGTGACC+AGG + chr1_4:47069837-47069856 Msa0166070:CDS 60.0%
!! TGCCCATGGGTTAGGCCTGA+TGG + chr1_4:47070273-47070292 Msa0166070:CDS 60.0%
GTGCACGCGAATAGGGACCA+TGG - chr1_4:47070340-47070359 None:intergenic 60.0%
GGTGGACCTCATGGAGATGC+GGG + chr1_4:47070513-47070532 Msa0166070:CDS 60.0%
GTGGACCTCATGGAGATGCG+GGG + chr1_4:47070514-47070533 Msa0166070:CDS 60.0%
!! CATGGTGGAGGTGCCTTCTC+AGG + chr1_4:47070585-47070604 Msa0166070:CDS 60.0%
GCCCGTAAGCAGCAGTCTTC+TGG - chr1_4:47070881-47070900 None:intergenic 60.0%
GTGCTCTCCTAGGTGTGGAC+TGG + chr1_4:47071122-47071141 Msa0166070:three_prime_UTR 60.0%
!! CTCTCCTAGGTGTGGACTGG+AGG + chr1_4:47071125-47071144 Msa0166070:three_prime_UTR 60.0%
GTGAGCCCCGCATCTCCATG+AGG - chr1_4:47070522-47070541 None:intergenic 65.0%
CATGGAGATGCGGGGCTCAC+CGG + chr1_4:47070522-47070541 Msa0166070:CDS 65.0%
! GGTGGTTGGGGTGCTCATGG+TGG + chr1_4:47070570-47070589 Msa0166070:CDS 65.0%
! GGTTGGGGTGCTCATGGTGG+AGG + chr1_4:47070573-47070592 Msa0166070:CDS 65.0%
CCACTCCGGTCCACCTTGGT+TGG - chr1_4:47070618-47070637 None:intergenic 65.0%
CCAACCAAGGTGGACCGGAG+TGG + chr1_4:47070615-47070634 Msa0166070:CDS 65.0%
AGCACCACTCCGGTCCACCT+TGG - chr1_4:47070622-47070641 None:intergenic 65.0%
GTGAGCCCCGCATCTCCATG+AGG - chr1_4:47070522-47070541 None:intergenic 65.0%
CATGGAGATGCGGGGCTCAC+CGG + chr1_4:47070522-47070541 Msa0166070:CDS 65.0%
! GGTGGTTGGGGTGCTCATGG+TGG + chr1_4:47070570-47070589 Msa0166070:CDS 65.0%
! GGTTGGGGTGCTCATGGTGG+AGG + chr1_4:47070573-47070592 Msa0166070:CDS 65.0%
CCACTCCGGTCCACCTTGGT+TGG - chr1_4:47070618-47070637 None:intergenic 65.0%
CCAACCAAGGTGGACCGGAG+TGG + chr1_4:47070615-47070634 Msa0166070:CDS 65.0%
AGCACCACTCCGGTCCACCT+TGG - chr1_4:47070622-47070641 None:intergenic 65.0%
! TTTTGGGCGGGGGGTTGGGG+TGG + chr1_4:47069556-47069575 Msa0166070:five_prime_UTR 70.0%
GAGATGCGGGGCTCACCGGA+AGG + chr1_4:47070526-47070545 Msa0166070:CDS 70.0%
! TTTTGGGCGGGGGGTTGGGG+TGG + chr1_4:47069556-47069575 Msa0166070:five_prime_UTR 70.0%
GAGATGCGGGGCTCACCGGA+AGG + chr1_4:47070526-47070545 Msa0166070:CDS 70.0%
! TGGGCGGGGGGTTGGGGTGG+AGG + chr1_4:47069559-47069578 Msa0166070:five_prime_UTR 80.0%
! TGGGCGGGGGGTTGGGGTGG+AGG + chr1_4:47069559-47069578 Msa0166070:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 47069354 47071416 47069354 ID=Msa0166070;Name=Msa0166070
chr1_4 mRNA 47069354 47071416 47069354 ID=Msa0166070-mRNA-1;Parent=Msa0166070;Name=Msa0166070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=231|1|1|1|0|0|3|378|408
chr1_4 exon 47069354 47069636 47069354 ID=Msa0166070-mRNA-1:exon:13557;Parent=Msa0166070-mRNA-1
chr1_4 exon 47069791 47071004 47069791 ID=Msa0166070-mRNA-1:exon:13558;Parent=Msa0166070-mRNA-1
chr1_4 exon 47071078 47071416 47071078 ID=Msa0166070-mRNA-1:exon:13559;Parent=Msa0166070-mRNA-1
chr1_4 five_prime_UTR 47069354 47069584 47069354 ID=Msa0166070-mRNA-1:five_prime_utr;Parent=Msa0166070-mRNA-1
chr1_4 CDS 47069585 47069636 47069585 ID=Msa0166070-mRNA-1:cds;Parent=Msa0166070-mRNA-1
chr1_4 CDS 47069791 47070965 47069791 ID=Msa0166070-mRNA-1:cds;Parent=Msa0166070-mRNA-1
chr1_4 three_prime_UTR 47070966 47071004 47070966 ID=Msa0166070-mRNA-1:three_prime_utr;Parent=Msa0166070-mRNA-1
chr1_4 three_prime_UTR 47071078 47071416 47071078 ID=Msa0166070-mRNA-1:three_prime_utr;Parent=Msa0166070-mRNA-1
Gene Sequence

>Msa0166070

ATGTATGATAGCAGAGTAAATTTTGTGTGTGAATTATTTCCTTTGCATAGTGATATGGATACCTTCCTATTCACCTCAGAATCTGTAAACGAAGGTCACCCCGACAAGATCTGTGACCAGGTTTCAGATGCCATCCTTGATGCATGCTTGGAGCAAGATAAAGAGAGCAAGGTTGCCTGCGAGACCTGTACAAAAACTAACATGGTTATGGTCTTTGGTGAAATCACAACCAAGGCAAAGGTGGACTATGAGAAAATAGTTCGTGACACTTGCAGGAGTATTGGGTTTGTGTCTGCTGATGTTGGTCTTGATGCTGACAAATGCAATGTTCTCGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAAGGAGTTCACGGTCACTTGAGCAAGAAGCCTGAGGAAATTGGAGCTGGTGATCAAGGTCACATGTTTGGCTATGCCACTGACGAAACACCTGAACTAATGCCACTCACACATGTGCTTGCCACTAAAATTGGTGCCAAGCTCACTGAAGTTAGAAAGAATAAGACATGCCCATGGGTTAGGCCTGATGGTAAGACCCAAGTTACCGTTGAATACAAGAATGATAATGGAGCCATGGTCCCTATTCGCGTGCACACAATCCTCATTTCAACTCAACACGACGAAACTGTCACAAATGAAAAGATTGCTCAAGATTTGAAAGAGCATGTTATTAAACCTGTCGTCCCAGCTAAATACCTTGACGACAAGACCATCTTCCATCTCAACCCTTCAGGTAGGTTTGTGATTGGTGGACCTCATGGAGATGCGGGGCTCACCGGAAGGAAGATCATTATTGATACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGAAAGGATCCAACCAAGGTGGACCGGAGTGGTGCTTACATTGTTAGGCAAGCTGCAAAAAGTGTTGTCGCTTCAGGGCTTGCTCGTCGTTGTATTGTGCAGGTTTCTTATGCAATTGGAGTGCCAGAGCCACTTTCTGTTTTTGTGGACACTTACAAAACTGGAAAGATTCCAGATAAGGATATTTTGGTTCTGATTAAGGAGAATTTTGACTTCAGGCCTGGAATGATTGCTATCAACCTTGACCTCACAAGAGGTGGCAAATTCAGGTACCAGAAGACTGCTGCTTACGGGCATTTTGGACGTGACGATCCTGATTTTACATGGGAGACTGTGAAGATGCTCAAGCCCAAGGCTTGA
Protein sequence

>Msa0166070

MYDSRVNFVCELFPLHSDMDTFLFTSESVNEGHPDKICDQVSDAILDACLEQDKESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSADVGLDADKCNVLVNIEQQSPDIAQGVHGHLSKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKIGAKLTEVRKNKTCPWVRPDGKTQVTVEYKNDNGAMVPIRVHTILISTQHDETVTNEKIAQDLKEHVIKPVVPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKENFDFRPGMIAINLDLTRGGKFRYQKTAAYGHFGRDDPDFTWETVKMLKPKA*