AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027740 MtrunA17_Chr2g0318541 87.879 66 8 0 52 117 498 563 2.15e-30 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 153 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATAACCCTAAGAATTTC+TGG 0.124935 1_1:+52323921 None:intergenic
TGCAGAATTGAGAATTATTT+TGG 0.138453 1_1:-52323523 Msa0027740:five_prime_UTR
AATTAGTTACTATCATATTT+AGG 0.140806 1_1:-52320734 Msa0027740:three_prime_UTR
CCTGAATGACATTGATATTC+TGG 0.189504 1_1:+52321218 None:intergenic
ATCATCATCATAACTGTTAA+TGG 0.198865 1_1:-52322209 Msa0027740:three_prime_UTR
AAGAACAGTATACATGTAAA+TGG 0.205118 1_1:+52320485 None:intergenic
TGGGCACTTTAGGGGCATTT+TGG 0.228149 1_1:-52324619 Msa0027740:five_prime_UTR
GCTTGCATGTCTTCACAAAA+AGG 0.232418 1_1:-52323890 Msa0027740:five_prime_UTR
GGTAATTTGCTAATCCTTAA+TGG 0.245147 1_1:-52323695 Msa0027740:five_prime_UTR
TCCCATTTGGGCTATATATA+TGG 0.247098 1_1:-52324362 Msa0027740:intron
ATTAGTTACTATCATATTTA+GGG 0.265584 1_1:-52320733 Msa0027740:three_prime_UTR
TTCTAAAGACTGGTATGTTT+TGG 0.266573 1_1:+52324263 None:intergenic
ATTAAGGCTTGGTTTCATTA+AGG 0.270784 1_1:-52323071 Msa0027740:intron
TGCACTTTGTTGAATTGTTT+TGG 0.271540 1_1:-52320688 Msa0027740:three_prime_UTR
TCCAATTGATGAAATTTCTT+TGG 0.273796 1_1:-52324591 Msa0027740:five_prime_UTR
TTACTAGCTTAAGACATAAA+TGG 0.278661 1_1:-52321688 Msa0027740:three_prime_UTR
CAAATTCGATTTACTGTTCA+TGG 0.283346 1_1:+52324237 None:intergenic
GAAGAACAATACTTTGCTTT+TGG 0.289019 1_1:-52320882 Msa0027740:three_prime_UTR
GTCATGTAGTGGTGCAGTTT+TGG 0.298095 1_1:-52324048 Msa0027740:five_prime_UTR
ACCAAAGAAATTTCATCAAT+TGG 0.303256 1_1:+52324590 None:intergenic
CCAACGTTCATTGATTATAA+TGG 0.304555 1_1:-52321013 Msa0027740:three_prime_UTR
AATTCCAGACACATCCATTA+AGG 0.309297 1_1:+52323681 None:intergenic
CCAGAATATCAATGTCATTC+AGG 0.310628 1_1:-52321218 Msa0027740:three_prime_UTR
CACGATATTAGTCTTCTCTT+TGG 0.320611 1_1:-52322423 Msa0027740:CDS
ATACATAACAATGATAAAAT+AGG 0.322884 1_1:+52323964 None:intergenic
CTGAGGATACTGTGTTCTTC+CGG 0.331177 1_1:-52321853 Msa0027740:three_prime_UTR
TTGTTGTTCTTAGAATAAAA+AGG 0.336964 1_1:-52323719 Msa0027740:five_prime_UTR
CATTGTTTCCACTAACATTT+GGG 0.341087 1_1:-52324560 Msa0027740:intron
AGTTGAACTATGCAACATTA+AGG 0.341449 1_1:-52323087 Msa0027740:CDS
AAGTCTCTGGTATGTAAAAT+TGG 0.342123 1_1:-52322046 Msa0027740:three_prime_UTR
AGAAATTATGAATTGTTTGT+TGG 0.342694 1_1:-52323410 Msa0027740:five_prime_UTR
TCATTGTTTCCACTAACATT+TGG 0.347574 1_1:-52324561 Msa0027740:five_prime_UTR
TCAAACAACAGAAAATTAAA+TGG 0.348506 1_1:+52323296 None:intergenic
TCTAATTCTTGCTGTTACTA+AGG 0.349277 1_1:-52321972 Msa0027740:three_prime_UTR
TTCTGAGATTGGTTTGAGTT+GGG 0.378227 1_1:-52324113 Msa0027740:five_prime_UTR
ATGCGATAGGGTTCTGAGAT+TGG 0.378475 1_1:-52324124 Msa0027740:five_prime_UTR
TGAAATTTAAGTGTAGAATC+AGG 0.382944 1_1:-52320547 Msa0027740:three_prime_UTR
TGAGGATACTGTGTTCTTCC+GGG 0.383874 1_1:-52321852 Msa0027740:three_prime_UTR
CATGTACACAAAACGGAATC+AGG 0.384812 1_1:+52323806 None:intergenic
GTTCTTTGATCTGCTGTTGT+TGG 0.385533 1_1:-52324091 Msa0027740:five_prime_UTR
TCAATGAACGTTGGTGTAGC+TGG 0.388479 1_1:+52321022 None:intergenic
CTGATACATGTATCTCCTAT+TGG 0.389711 1_1:+52320799 None:intergenic
TCCTGTTTGTTATAGCCATA+AGG 0.397282 1_1:+52321080 None:intergenic
TCTTGGTGCTCAGTCCTTTG+AGG 0.398508 1_1:-52322714 Msa0027740:intron
ACAAAATAGAGCTGGGTGCC+TGG 0.399485 1_1:-52321135 Msa0027740:three_prime_UTR
TCTGTGAATAACCATATGAT+TGG 0.408436 1_1:-52321881 Msa0027740:three_prime_UTR
TGAAAATGTGATCACAATCA+TGG 0.410902 1_1:-52323170 Msa0027740:CDS
GTTCTGAGATTGGTTTGAGT+TGG 0.411370 1_1:-52324114 Msa0027740:five_prime_UTR
CTGCACTCTCTGAACTAATC+AGG 0.411911 1_1:-52320582 Msa0027740:three_prime_UTR
TGTGTCATGGTTTATTGTAA+TGG 0.412851 1_1:-52320625 Msa0027740:three_prime_UTR
TAATTTATCCTGCTCTTCAC+TGG 0.416641 1_1:+52320752 None:intergenic
TCTCCTATTGGCACCGTCAA+TGG 0.417525 1_1:+52320811 None:intergenic
ATGACATTGATATTCTGGTT+TGG 0.423705 1_1:+52321223 None:intergenic
TATTTAGGGTCATGGTGTGC+AGG 0.430442 1_1:-52320719 Msa0027740:three_prime_UTR
ACGCAGCTCCTGCCATGGTC+AGG 0.431291 1_1:-52322169 Msa0027740:three_prime_UTR
TGGCTATAACAAACAGGAAA+GGG 0.435466 1_1:-52321075 Msa0027740:three_prime_UTR
ATTTATGAGCGTTATGAGAC+TGG 0.439540 1_1:-52322296 Msa0027740:three_prime_UTR
AGTGAATTGTGGAGATTCCT+TGG 0.447714 1_1:+52322736 None:intergenic
GCCACCCGCCCAAATGTTAG+TGG 0.449054 1_1:+52324552 None:intergenic
CCTCAGCTTGCCCAATCATA+TGG 0.450278 1_1:+52321870 None:intergenic
GTATCCGAATCTACTCCTTA+TGG 0.451663 1_1:-52321095 Msa0027740:three_prime_UTR
AGGGTCATGGTGTGCAGGGT+TGG 0.456110 1_1:-52320714 Msa0027740:three_prime_UTR
CCTTTCCGACCTCTAGTGCT+TGG 0.456216 1_1:+52322474 None:intergenic
TCATTTCCTTCTTCAGATTG+TGG 0.458373 1_1:-52324334 Msa0027740:five_prime_UTR
TCATCATCGCTGAAGGAAAC+CGG 0.458878 1_1:+52322525 None:intergenic
TGAGATGAAAATTATGTGCT+TGG 0.462162 1_1:-52323325 Msa0027740:five_prime_UTR
CACAGAAGCCTGACCATGGC+AGG 0.462409 1_1:+52322161 None:intergenic
AACTATGCAACATTAAGGCT+TGG 0.462574 1_1:-52323082 Msa0027740:CDS
ATCACTTTCATTGATTATTG+TGG 0.462962 1_1:-52322109 Msa0027740:three_prime_UTR
CAATAGGAGATACATGTATC+AGG 0.463833 1_1:-52320798 Msa0027740:three_prime_UTR
CGCATATGTCAGGCAAATCC+AGG 0.467174 1_1:+52321117 None:intergenic
ATCTATCTGTGATTTGTTCG+TGG 0.469798 1_1:-52321932 Msa0027740:three_prime_UTR
TCCTTATGGCTATAACAAAC+AGG 0.471089 1_1:-52321081 Msa0027740:three_prime_UTR
TACTATCATATTTAGGGTCA+TGG 0.476367 1_1:-52320727 Msa0027740:three_prime_UTR
TTCATGGGGTTTCTAAAGAC+TGG 0.477011 1_1:+52324253 None:intergenic
CATAATTCATGTACACAAAA+CGG 0.479763 1_1:+52323799 None:intergenic
AGTCCATTGACGGTGCCAAT+AGG 0.481728 1_1:-52320814 Msa0027740:three_prime_UTR
TTCGCAGAACAAGGCTAGAA+TGG 0.483429 1_1:-52321305 Msa0027740:intron
TTCGTTGTCCAGTGAAGAGC+AGG 0.484634 1_1:-52320760 Msa0027740:three_prime_UTR
TGCAGCTGGAGCTGATAGTC+CGG 0.486818 1_1:-52322544 Msa0027740:CDS
CCCCTAAAGTGCCCAAAATG+AGG 0.487598 1_1:+52324627 None:intergenic
GTGTCAGCATGCATTTCCCT+TGG 0.489277 1_1:-52320974 Msa0027740:three_prime_UTR
CTGTGAATAACCATATGATT+GGG 0.489653 1_1:-52321880 Msa0027740:three_prime_UTR
TTTGTTCTAGGAACGTGTTA+AGG 0.492658 1_1:-52322774 Msa0027740:intron
AGAGCAAGACAAAACCTTCC+CGG 0.495380 1_1:+52321834 None:intergenic
TGCAGCAATAATTCAAAGAC+AGG 0.499476 1_1:+52320600 None:intergenic
AGAACAGTATACATGTAAAT+GGG 0.499738 1_1:+52320486 None:intergenic
AGAGTTCTACAAAATAGAGC+TGG 0.500119 1_1:-52321143 Msa0027740:three_prime_UTR
TTTCAAGGCAGAAGTGCAGC+TGG 0.505124 1_1:-52322558 Msa0027740:CDS
CGGTTTGCACCAGAACTTGG+TGG 0.505268 1_1:-52321738 Msa0027740:intron
TTTCAATTGATCAAAGGATG+AGG 0.509427 1_1:+52324015 None:intergenic
ATTTAGGGTCATGGTGTGCA+GGG 0.511669 1_1:-52320718 Msa0027740:three_prime_UTR
AAATTCGATTTACTGTTCAT+GGG 0.512240 1_1:+52324238 None:intergenic
ATTTGTTGGGTTTACCTCAA+AGG 0.513130 1_1:+52322700 None:intergenic
GAATCTCCACAATTCACTCT+TGG 0.513144 1_1:-52322731 Msa0027740:CDS
GAAAATGTGATCACAATCAT+GGG 0.515424 1_1:-52323169 Msa0027740:CDS
TGGAATGGAATTTGTTGGGT+AGG 0.516364 1_1:+52321042 None:intergenic
GATTCGGATACGCATATGTC+AGG 0.519976 1_1:+52321107 None:intergenic
TGTAAAATTGGAGGTGAGTG+GGG 0.520147 1_1:-52322034 Msa0027740:three_prime_UTR
TGTGCAAGTACACAAGTCTC+TGG 0.520349 1_1:-52322059 Msa0027740:three_prime_UTR
ATAGCCATAAGGAGTAGATT+CGG 0.520589 1_1:+52321091 None:intergenic
TTTATGTCTTAAGCTAGTAA+AGG 0.520978 1_1:+52321691 None:intergenic
ATGTAAAATTGGAGGTGAGT+GGG 0.523440 1_1:-52322035 Msa0027740:three_prime_UTR
TAGCTGGAATGGAATTTGTT+GGG 0.523834 1_1:+52321038 None:intergenic
AGTTAGCATACTATCTTCCA+AGG 0.534470 1_1:+52320957 None:intergenic
GTTCGTGGACCATGCGATGA+TGG 0.536080 1_1:-52321917 Msa0027740:three_prime_UTR
GTAGCTGGAATGGAATTTGT+TGG 0.537737 1_1:+52321037 None:intergenic
CTGGACAACGAATGAGATGC+AGG 0.540409 1_1:+52320771 None:intergenic
TAATCCTTAATGGATGTGTC+TGG 0.542073 1_1:-52323685 Msa0027740:five_prime_UTR
GAACGTTGGTGTAGCTGGAA+TGG 0.542196 1_1:+52321027 None:intergenic
ATGAAACCACAATCTGAAGA+AGG 0.543903 1_1:+52324328 None:intergenic
GATACTGTGTTCTTCCGGGA+AGG 0.549324 1_1:-52321848 Msa0027740:intron
CTCACATCTCCACTCGCATC+CGG 0.551685 1_1:+52320921 None:intergenic
ACATGTTCACTGTTGTGTCA+TGG 0.552124 1_1:-52320638 Msa0027740:three_prime_UTR
CGATGAACAGTAATGCGATA+GGG 0.553516 1_1:-52324136 Msa0027740:five_prime_UTR
GGAGCGATCTACGCGCTCCA+AGG 0.554334 1_1:-52322753 Msa0027740:CDS
ATGGCTATAACAAACAGGAA+AGG 0.562348 1_1:-52321076 Msa0027740:three_prime_UTR
GAGATGAAAATTATGTGCTT+GGG 0.562551 1_1:-52323324 Msa0027740:five_prime_UTR
TTTCAACGCAGCTCCTGCCA+TGG 0.567402 1_1:-52322174 Msa0027740:three_prime_UTR
GGCATCTTCATCATCGCTGA+AGG 0.569407 1_1:+52322518 None:intergenic
TCGATGAACAGTAATGCGAT+AGG 0.572164 1_1:-52324137 Msa0027740:five_prime_UTR
CCCTAAAGTGCCCAAAATGA+GGG 0.576444 1_1:+52324628 None:intergenic
TTCTTGCTGTTACTAAGGAG+AGG 0.577976 1_1:-52321967 Msa0027740:three_prime_UTR
TTATAATGGTGAAACTAGCT+TGG 0.578050 1_1:-52320999 Msa0027740:three_prime_UTR
TCTTGCTGTTACTAAGGAGA+GGG 0.578245 1_1:-52321966 Msa0027740:three_prime_UTR
TCTCTGGTATGTAAAATTGG+AGG 0.581652 1_1:-52322043 Msa0027740:three_prime_UTR
GTGCTTGTGAAGTCCATTGA+CGG 0.581942 1_1:-52320824 Msa0027740:three_prime_UTR
AGCTCAAAACCAAGCACTAG+AGG 0.589923 1_1:-52322483 Msa0027740:CDS
AATTCGATTTACTGTTCATG+GGG 0.602667 1_1:+52324239 None:intergenic
CCATTATAATCAATGAACGT+TGG 0.604275 1_1:+52321013 None:intergenic
CCAAGCACTAGAGGTCGGAA+AGG 0.605138 1_1:-52322474 Msa0027740:CDS
GAGTTCTACAAAATAGAGCT+GGG 0.606882 1_1:-52321142 Msa0027740:three_prime_UTR
AGACTGGTGTACATCTATGA+TGG 0.607195 1_1:-52322280 Msa0027740:three_prime_UTR
CTAACTATTGTTGATCATGC+CGG 0.609278 1_1:-52320940 Msa0027740:three_prime_UTR
AGAAGCTAACAAATCTGCAA+AGG 0.609630 1_1:+52322388 None:intergenic
AAGCACGCAGGTTTGTCGAA+TGG 0.614852 1_1:-52322000 Msa0027740:three_prime_UTR
ACTTGGTGGTGATATTGACT+TGG 0.615160 1_1:-52321724 Msa0027740:three_prime_UTR
GAGTGCTTTGCAAAGCACGC+AGG 0.616754 1_1:-52322012 Msa0027740:three_prime_UTR
TATGTAAAATTGGAGGTGAG+TGG 0.623493 1_1:-52322036 Msa0027740:three_prime_UTR
GGCTATAACAAACAGGAAAG+GGG 0.627042 1_1:-52321074 Msa0027740:three_prime_UTR
TGATGATTATTACACTGAAG+TGG 0.627147 1_1:+52320848 None:intergenic
TAATGGTGAAACTAGCTTGG+TGG 0.627473 1_1:-52320996 Msa0027740:three_prime_UTR
AGAGAAGACTAATATCGTGA+TGG 0.628417 1_1:+52322427 None:intergenic
AGATACTCTCCATCATCGCA+TGG 0.629329 1_1:+52321908 None:intergenic
CCATATGATTGGGCAAGCTG+AGG 0.633601 1_1:-52321870 Msa0027740:three_prime_UTR
TTGATCATGCCGGATGCGAG+TGG 0.634220 1_1:-52320930 Msa0027740:three_prime_UTR
CAAAACCAAGCACTAGAGGT+CGG 0.637760 1_1:-52322479 Msa0027740:CDS
GATTCTTCATAGTCATGTAG+TGG 0.655238 1_1:-52324059 Msa0027740:five_prime_UTR
ATGACACAACAGTGAACATG+TGG 0.658159 1_1:+52320640 None:intergenic
TGAGCACCAAGAGTGAATTG+TGG 0.660229 1_1:+52322725 None:intergenic
GTTAGCATACTATCTTCCAA+GGG 0.666617 1_1:+52320958 None:intergenic
AAATGTTAGTGGAAACAATG+AGG 0.668704 1_1:+52324563 None:intergenic
TTGTTGTTGAGAATTAAGAA+CGG 0.697491 1_1:-52323603 Msa0027740:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTATTATAGTTG+AGG - chr1_1:52321238-52321257 Msa0027740:three_prime_UTR 10.0%
!!! GTCAATTTTTTATTATTTTT+TGG - chr1_1:52323293-52323312 Msa0027740:five_prime_UTR 10.0%
!!! TTTATTTGTTATTACTATAT+AGG - chr1_1:52323740-52323759 Msa0027740:five_prime_UTR 10.0%
!! ATACATAACAATGATAAAAT+AGG + chr1_1:52321136-52321155 None:intergenic 15.0%
!!! TTGAAATCAGAATTATTTTA+TGG - chr1_1:52322262-52322281 Msa0027740:three_prime_UTR 15.0%
!! AATGTATAATATCATTTGTT+GGG + chr1_1:52322413-52322432 None:intergenic 15.0%
!! ATTGAAAGAAAGAAAAAAAA+AGG + chr1_1:52322752-52322771 None:intergenic 15.0%
!! AATTACATTTATTACTTGAT+GGG + chr1_1:52323644-52323663 None:intergenic 15.0%
!! AAATTACATTTATTACTTGA+TGG + chr1_1:52323645-52323664 None:intergenic 15.0%
!! AATTAGTTACTATCATATTT+AGG - chr1_1:52324363-52324382 Msa0027740:intron 15.0%
!! ATTAGTTACTATCATATTTA+GGG - chr1_1:52324364-52324383 Msa0027740:intron 15.0%
!!! AATCAGGTTATTTAAATTTT+TGG - chr1_1:52324566-52324585 Msa0027740:five_prime_UTR 15.0%
!!! TATTTTTCCAGAAATTCTTA+GGG - chr1_1:52321169-52321188 Msa0027740:three_prime_UTR 20.0%
!!! ATTTCTTGGTTTTATTTTGT+TGG - chr1_1:52321266-52321285 Msa0027740:three_prime_UTR 20.0%
!!! TTGTTGTTCTTAGAATAAAA+AGG - chr1_1:52321378-52321397 Msa0027740:intron 20.0%
!!! TTTTCAACTTTTTTTCTTTC+TGG - chr1_1:52321444-52321463 Msa0027740:intron 20.0%
!!! TTTCAACTTTTTTTCTTTCT+GGG - chr1_1:52321445-52321464 Msa0027740:intron 20.0%
!!! TTGAGAATTATTTTGGATTT+TGG - chr1_1:52321581-52321600 Msa0027740:intron 20.0%
!! TCATAAAAAATCTCATATTC+AGG + chr1_1:52321645-52321664 None:intergenic 20.0%
!!! TGAATATGAGATTTTTTATG+AGG - chr1_1:52321644-52321663 Msa0027740:intron 20.0%
!! AGAAATTATGAATTGTTTGT+TGG - chr1_1:52321687-52321706 Msa0027740:three_prime_UTR 20.0%
!! TCAAACAACAGAAAATTAAA+TGG + chr1_1:52321804-52321823 None:intergenic 20.0%
!!! AATGTGTTGTTTTGATAAAA+AGG - chr1_1:52321891-52321910 Msa0027740:three_prime_UTR 20.0%
!!! ATGTGTTGTTTTGATAAAAA+GGG - chr1_1:52321892-52321911 Msa0027740:three_prime_UTR 20.0%
!!! TCATTTTTCAAGCAATTTTA+TGG - chr1_1:52321976-52321995 Msa0027740:three_prime_UTR 20.0%
!! TTGTCATCAGAATTATTTAA+TGG - chr1_1:52322066-52322085 Msa0027740:three_prime_UTR 20.0%
!! CAATGTATAATATCATTTGT+TGG + chr1_1:52322414-52322433 None:intergenic 20.0%
!! TTGAAAATTATGTAAAAAGC+AGG - chr1_1:52322451-52322470 Msa0027740:CDS 20.0%
!! TGAAAATTATGTAAAAAGCA+GGG - chr1_1:52322452-52322471 Msa0027740:CDS 20.0%
!!! TGTAATTTGCTTATATGTTT+TGG - chr1_1:52323657-52323676 Msa0027740:five_prime_UTR 20.0%
! TCCAATTGATGAAATTTCTT+TGG - chr1_1:52320506-52320525 Msa0027740:three_prime_UTR 25.0%
! ACCAAAGAAATTTCATCAAT+TGG + chr1_1:52320510-52320529 None:intergenic 25.0%
! AAATTCGATTTACTGTTCAT+GGG + chr1_1:52320862-52320881 None:intergenic 25.0%
!! CATGATTTTCAATTGATCAA+AGG + chr1_1:52321091-52321110 None:intergenic 25.0%
!! GTATTTTTCCAGAAATTCTT+AGG - chr1_1:52321168-52321187 Msa0027740:three_prime_UTR 25.0%
! CATAATTCATGTACACAAAA+CGG + chr1_1:52321301-52321320 None:intergenic 25.0%
! AGTGTAAAAATATGAGAGAA+AGG - chr1_1:52321321-52321340 Msa0027740:intron 25.0%
! GTGTAAAAATATGAGAGAAA+GGG - chr1_1:52321322-52321341 Msa0027740:intron 25.0%
! TTGTTCTTAGAATAAAAAGG+AGG - chr1_1:52321381-52321400 Msa0027740:intron 25.0%
!!! TTCAACTTTTTTTCTTTCTG+GGG - chr1_1:52321446-52321465 Msa0027740:intron 25.0%
!! TTGTTGTTGAGAATTAAGAA+CGG - chr1_1:52321494-52321513 Msa0027740:intron 25.0%
!! TGCAGAATTGAGAATTATTT+TGG - chr1_1:52321574-52321593 Msa0027740:intron 25.0%
!!! ATTTTGGATTTTGGTTACTT+TGG - chr1_1:52321590-52321609 Msa0027740:intron 25.0%
!!! TGATCGATTTTTAATCTCTT+TGG - chr1_1:52321726-52321745 Msa0027740:three_prime_UTR 25.0%
! AAGAAATAAGCTAAGAATGA+AGG + chr1_1:52322504-52322523 None:intergenic 25.0%
!! TTATTTCTTTATTCCGTACA+GGG - chr1_1:52322515-52322534 Msa0027740:CDS 25.0%
! ATCATCATCATAACTGTTAA+TGG - chr1_1:52322888-52322907 Msa0027740:intron 25.0%
!! ATCACTTTCATTGATTATTG+TGG - chr1_1:52322988-52323007 Msa0027740:intron 25.0%
!!! ATTTTTTGGTTCTGATATGT+TGG - chr1_1:52323307-52323326 Msa0027740:five_prime_UTR 25.0%
! TTTATGTCTTAAGCTAGTAA+AGG + chr1_1:52323409-52323428 None:intergenic 25.0%
!! TTACTAGCTTAAGACATAAA+TGG - chr1_1:52323409-52323428 Msa0027740:five_prime_UTR 25.0%
!! GAAGTCTTCTAAATTAGTTT+AGG - chr1_1:52323510-52323529 Msa0027740:five_prime_UTR 25.0%
! AGATACACATGAAAAAATGA+GGG + chr1_1:52323695-52323714 None:intergenic 25.0%
! TAGATACACATGAAAAAATG+AGG + chr1_1:52323696-52323715 None:intergenic 25.0%
! TCATGTGTATCTATTTAACT+TGG - chr1_1:52323703-52323722 Msa0027740:five_prime_UTR 25.0%
!!! GTATCTATTTAACTTGGTTT+TGG - chr1_1:52323709-52323728 Msa0027740:five_prime_UTR 25.0%
!!! ACATTTTTTGACAAAACAGT+TGG + chr1_1:52323818-52323837 None:intergenic 25.0%
!! AACTGTTTTGTCAAAAAATG+TGG - chr1_1:52323817-52323836 Msa0027740:five_prime_UTR 25.0%
!! AAAACGATAAGGTCTATTTT+CGG - chr1_1:52323911-52323930 Msa0027740:five_prime_UTR 25.0%
! TGAAATTTAAGTGTAGAATC+AGG - chr1_1:52324550-52324569 Msa0027740:intron 25.0%
! AGAACAGTATACATGTAAAT+GGG + chr1_1:52324614-52324633 None:intergenic 25.0%
! AAGAACAGTATACATGTAAA+TGG + chr1_1:52324615-52324634 None:intergenic 25.0%
! CGGAAAAATGGAAATTAATA+TGG + chr1_1:52324649-52324668 None:intergenic 25.0%
GGCAAAAATGGAATTATCTA+GGG + chr1_1:52320451-52320470 None:intergenic 30.0%
AAATGTTAGTGGAAACAATG+AGG + chr1_1:52320537-52320556 None:intergenic 30.0%
TCATTGTTTCCACTAACATT+TGG - chr1_1:52320536-52320555 Msa0027740:three_prime_UTR 30.0%
CATTGTTTCCACTAACATTT+GGG - chr1_1:52320537-52320556 Msa0027740:three_prime_UTR 30.0%
! ACTGAAGTATTATCCCATTT+GGG - chr1_1:52320723-52320742 Msa0027740:three_prime_UTR 30.0%
ACCATATATATAGCCCAAAT+GGG + chr1_1:52320739-52320758 None:intergenic 30.0%
!! TTCTAAAGACTGGTATGTTT+TGG + chr1_1:52320837-52320856 None:intergenic 30.0%
AATTCGATTTACTGTTCATG+GGG + chr1_1:52320861-52320880 None:intergenic 30.0%
CAAATTCGATTTACTGTTCA+TGG + chr1_1:52320863-52320882 None:intergenic 30.0%
TTTCAATTGATCAAAGGATG+AGG + chr1_1:52321085-52321104 None:intergenic 30.0%
AGGAAACACAAAAATTTGAC+TGG + chr1_1:52321116-52321135 None:intergenic 30.0%
AACATAACCCTAAGAATTTC+TGG + chr1_1:52321179-52321198 None:intergenic 30.0%
!!! TAGTTGAGGTTTTGATTTCT+TGG - chr1_1:52321252-52321271 Msa0027740:three_prime_UTR 30.0%
!! GGTAATTTGCTAATCCTTAA+TGG - chr1_1:52321402-52321421 Msa0027740:intron 30.0%
! CTTTGTGTACAAATTTTTGC+TGG - chr1_1:52321528-52321547 Msa0027740:intron 30.0%
TGAGATGAAAATTATGTGCT+TGG - chr1_1:52321772-52321791 Msa0027740:intron 30.0%
GAGATGAAAATTATGTGCTT+GGG - chr1_1:52321773-52321792 Msa0027740:intron 30.0%
!! GTTTTGATAAAAAGGGAATC+AGG - chr1_1:52321899-52321918 Msa0027740:three_prime_UTR 30.0%
TGAAAATGTGATCACAATCA+TGG - chr1_1:52321927-52321946 Msa0027740:three_prime_UTR 30.0%
GAAAATGTGATCACAATCAT+GGG - chr1_1:52321928-52321947 Msa0027740:three_prime_UTR 30.0%
AGTTGAACTATGCAACATTA+AGG - chr1_1:52322010-52322029 Msa0027740:three_prime_UTR 30.0%
! ATTAAGGCTTGGTTTCATTA+AGG - chr1_1:52322026-52322045 Msa0027740:three_prime_UTR 30.0%
! GATAACGTTCTTTTTGTTCT+AGG - chr1_1:52322110-52322129 Msa0027740:three_prime_UTR 30.0%
AAAGCCAACAAATGACATTA+AGG - chr1_1:52322206-52322225 Msa0027740:three_prime_UTR 30.0%
! ATTAAGGCTTGGTTTCATTA+AGG - chr1_1:52322026-52322045 Msa0027740:three_prime_UTR 30.0%
ATAATAGTATGATCAGTGAC+TGG - chr1_1:52322287-52322306 Msa0027740:three_prime_UTR 30.0%
! ATCGTTCTTCTTTTTGTTCT+AGG - chr1_1:52322311-52322330 Msa0027740:exon 30.0%
! TTATGTAAAAAGCAGGGTTT+TGG - chr1_1:52322458-52322477 Msa0027740:CDS 30.0%
! TATGTAAAAAGCAGGGTTTT+GGG - chr1_1:52322459-52322478 Msa0027740:CDS 30.0%
! CTTATTTCTTTATTCCGTAC+AGG - chr1_1:52322514-52322533 Msa0027740:CDS 30.0%
GAAAGAAAAAAAAAGGTGAG+AGG + chr1_1:52322745-52322764 None:intergenic 30.0%
AAGTCTCTGGTATGTAAAAT+TGG - chr1_1:52323051-52323070 Msa0027740:intron 30.0%
!! TCTAATTCTTGCTGTTACTA+AGG - chr1_1:52323125-52323144 Msa0027740:CDS 30.0%
TCTGTGAATAACCATATGAT+TGG - chr1_1:52323216-52323235 Msa0027740:exon 30.0%
CTGTGAATAACCATATGATT+GGG - chr1_1:52323217-52323236 Msa0027740:exon 30.0%
! ATGACACTAATATCCTTTTC+CGG - chr1_1:52323339-52323358 Msa0027740:five_prime_UTR 30.0%
TATAAACCAAGAGTGGAATT+TGG + chr1_1:52323602-52323621 None:intergenic 30.0%
TCCACTCTTGGTTTATATTA+AGG - chr1_1:52323605-52323624 Msa0027740:five_prime_UTR 30.0%
ACCTTAATATAAACCAAGAG+TGG + chr1_1:52323609-52323628 None:intergenic 30.0%
! ATGACATTGATATTCTGGTT+TGG + chr1_1:52323877-52323896 None:intergenic 30.0%
!! GGTTGATAAGAAAAACGATA+AGG - chr1_1:52323900-52323919 Msa0027740:five_prime_UTR 30.0%
CCATTATAATCAATGAACGT+TGG + chr1_1:52324087-52324106 None:intergenic 30.0%
! CCAACGTTCATTGATTATAA+TGG - chr1_1:52324084-52324103 Msa0027740:five_prime_UTR 30.0%
TTATAATGGTGAAACTAGCT+TGG - chr1_1:52324098-52324117 Msa0027740:five_prime_UTR 30.0%
! GAAGAACAATACTTTGCTTT+TGG - chr1_1:52324215-52324234 Msa0027740:five_prime_UTR 30.0%
TGATGATTATTACACTGAAG+TGG + chr1_1:52324252-52324271 None:intergenic 30.0%
! TACTATCATATTTAGGGTCA+TGG - chr1_1:52324370-52324389 Msa0027740:intron 30.0%
! TGCACTTTGTTGAATTGTTT+TGG - chr1_1:52324409-52324428 Msa0027740:intron 30.0%
TGTGTCATGGTTTATTGTAA+TGG - chr1_1:52324472-52324491 Msa0027740:intron 30.0%
GGGCAAAAATGGAATTATCT+AGG + chr1_1:52320452-52320471 None:intergenic 35.0%
!! TTCCATTTTTGCCCTCATTT+TGG - chr1_1:52320458-52320477 Msa0027740:three_prime_UTR 35.0%
!! TCCATTTTTGCCCTCATTTT+GGG - chr1_1:52320459-52320478 Msa0027740:three_prime_UTR 35.0%
! ATTAAATCTGGGACACACAA+AGG + chr1_1:52320624-52320643 None:intergenic 35.0%
GTATGGGTGACATTAAATCT+GGG + chr1_1:52320635-52320654 None:intergenic 35.0%
TGTATGGGTGACATTAAATC+TGG + chr1_1:52320636-52320655 None:intergenic 35.0%
ACACAAAAGTTTGTGTTGTG+TGG + chr1_1:52320670-52320689 None:intergenic 35.0%
! ACACAACACAAACTTTTGTG+TGG - chr1_1:52320669-52320688 Msa0027740:three_prime_UTR 35.0%
ACTTCAGTGACATAATGTCA+CGG + chr1_1:52320711-52320730 None:intergenic 35.0%
! CACTGAAGTATTATCCCATT+TGG - chr1_1:52320722-52320741 Msa0027740:three_prime_UTR 35.0%
TCCCATTTGGGCTATATATA+TGG - chr1_1:52320735-52320754 Msa0027740:three_prime_UTR 35.0%
CACCATATATATAGCCCAAA+TGG + chr1_1:52320740-52320759 None:intergenic 35.0%
TCATTTCCTTCTTCAGATTG+TGG - chr1_1:52320763-52320782 Msa0027740:three_prime_UTR 35.0%
ATGAAACCACAATCTGAAGA+AGG + chr1_1:52320772-52320791 None:intergenic 35.0%
!! TTCTGAGATTGGTTTGAGTT+GGG - chr1_1:52320984-52321003 Msa0027740:three_prime_UTR 35.0%
GATTCTTCATAGTCATGTAG+TGG - chr1_1:52321038-52321057 Msa0027740:three_prime_UTR 35.0%
! TAATCCTTAATGGATGTGTC+TGG - chr1_1:52321412-52321431 Msa0027740:intron 35.0%
AATTCCAGACACATCCATTA+AGG + chr1_1:52321419-52321438 None:intergenic 35.0%
AACTATGCAACATTAAGGCT+TGG - chr1_1:52322015-52322034 Msa0027740:three_prime_UTR 35.0%
!! TTTGTTCTAGGAACGTGTTA+AGG - chr1_1:52322122-52322141 Msa0027740:three_prime_UTR 35.0%
!! ATTTGTTGGCTTTACCTCAA+AGG + chr1_1:52322199-52322218 None:intergenic 35.0%
! CAAGCCTTAATGTCATTTGT+TGG + chr1_1:52322213-52322232 None:intergenic 35.0%
CAACAAATGACATTAAGGCT+TGG - chr1_1:52322211-52322230 Msa0027740:three_prime_UTR 35.0%
!! TTTGTTCTAGGAACGTGTTA+AGG - chr1_1:52322122-52322141 Msa0027740:three_prime_UTR 35.0%
! ATTTGTTGGGTTTACCTCAA+AGG + chr1_1:52322400-52322419 None:intergenic 35.0%
! TTTTGAGCTTAATGTTGGCA+TGG + chr1_1:52322603-52322622 None:intergenic 35.0%
!!! CTTGGTTTTGAGCTTAATGT+TGG + chr1_1:52322608-52322627 None:intergenic 35.0%
AGAGAAGACTAATATCGTGA+TGG + chr1_1:52322673-52322692 None:intergenic 35.0%
!! CACGATATTAGTCTTCTCTT+TGG - chr1_1:52322674-52322693 Msa0027740:intron 35.0%
AGAAGCTAACAAATCTGCAA+AGG + chr1_1:52322712-52322731 None:intergenic 35.0%
ATTTATGAGCGTTATGAGAC+TGG - chr1_1:52322801-52322820 Msa0027740:intron 35.0%
TCTCTGGTATGTAAAATTGG+AGG - chr1_1:52323054-52323073 Msa0027740:intron 35.0%
TATGTAAAATTGGAGGTGAG+TGG - chr1_1:52323061-52323080 Msa0027740:intron 35.0%
ATGTAAAATTGGAGGTGAGT+GGG - chr1_1:52323062-52323081 Msa0027740:intron 35.0%
!! ATCTATCTGTGATTTGTTCG+TGG - chr1_1:52323165-52323184 Msa0027740:CDS 35.0%
!!! ATAGGCTAGCTTTTTTGACA+TGG - chr1_1:52323758-52323777 Msa0027740:five_prime_UTR 35.0%
GTATATCATTTCGCAGAACA+AGG - chr1_1:52323783-52323802 Msa0027740:five_prime_UTR 35.0%
CCTGAATGACATTGATATTC+TGG + chr1_1:52323882-52323901 None:intergenic 35.0%
CCAGAATATCAATGTCATTC+AGG - chr1_1:52323879-52323898 Msa0027740:five_prime_UTR 35.0%
AGAGTTCTACAAAATAGAGC+TGG - chr1_1:52323954-52323973 Msa0027740:five_prime_UTR 35.0%
GAGTTCTACAAAATAGAGCT+GGG - chr1_1:52323955-52323974 Msa0027740:five_prime_UTR 35.0%
ATAGCCATAAGGAGTAGATT+CGG + chr1_1:52324009-52324028 None:intergenic 35.0%
TCCTTATGGCTATAACAAAC+AGG - chr1_1:52324016-52324035 Msa0027740:five_prime_UTR 35.0%
!! TCCTGTTTGTTATAGCCATA+AGG + chr1_1:52324020-52324039 None:intergenic 35.0%
ATGGCTATAACAAACAGGAA+AGG - chr1_1:52324021-52324040 Msa0027740:five_prime_UTR 35.0%
TGGCTATAACAAACAGGAAA+GGG - chr1_1:52324022-52324041 Msa0027740:five_prime_UTR 35.0%
! TAGCTGGAATGGAATTTGTT+GGG + chr1_1:52324062-52324081 None:intergenic 35.0%
GTTAGCATACTATCTTCCAA+GGG + chr1_1:52324142-52324161 None:intergenic 35.0%
AGTTAGCATACTATCTTCCA+AGG + chr1_1:52324143-52324162 None:intergenic 35.0%
CTAACTATTGTTGATCATGC+CGG - chr1_1:52324157-52324176 Msa0027740:five_prime_UTR 35.0%
!! ACAATACTTTGCTTTTGGTG+AGG - chr1_1:52324220-52324239 Msa0027740:five_prime_UTR 35.0%
CTGATACATGTATCTCCTAT+TGG + chr1_1:52324301-52324320 None:intergenic 35.0%
CAATAGGAGATACATGTATC+AGG - chr1_1:52324299-52324318 Msa0027740:five_prime_UTR 35.0%
TAATTTATCCTGCTCTTCAC+TGG + chr1_1:52324348-52324367 None:intergenic 35.0%
TGCAGCAATAATTCAAAGAC+AGG + chr1_1:52324500-52324519 None:intergenic 35.0%
TGTTTCCACTAACATTTGGG+CGG - chr1_1:52320540-52320559 Msa0027740:three_prime_UTR 40.0%
TGTCACCGTGACATTAAATC+TGG - chr1_1:52320583-52320602 Msa0027740:three_prime_UTR 40.0%
GTCACCGTGACATTAAATCT+GGG - chr1_1:52320584-52320603 Msa0027740:three_prime_UTR 40.0%
GTCACGGTGACATTAAATCT+GGG + chr1_1:52320695-52320714 None:intergenic 40.0%
TGTCACGGTGACATTAAATC+TGG + chr1_1:52320696-52320715 None:intergenic 40.0%
! TTCATGGGGTTTCTAAAGAC+TGG + chr1_1:52320847-52320866 None:intergenic 40.0%
TCGATGAACAGTAATGCGAT+AGG - chr1_1:52320960-52320979 Msa0027740:three_prime_UTR 40.0%
CGATGAACAGTAATGCGATA+GGG - chr1_1:52320961-52320980 Msa0027740:three_prime_UTR 40.0%
!! GTTCTGAGATTGGTTTGAGT+TGG - chr1_1:52320983-52321002 Msa0027740:three_prime_UTR 40.0%
GTTCTTTGATCTGCTGTTGT+TGG - chr1_1:52321006-52321025 Msa0027740:three_prime_UTR 40.0%
GCTTGCATGTCTTCACAAAA+AGG - chr1_1:52321207-52321226 Msa0027740:three_prime_UTR 40.0%
CATGTACACAAAACGGAATC+AGG + chr1_1:52321294-52321313 None:intergenic 40.0%
GAATATTCACAGTTCACTCC+TGG - chr1_1:52322165-52322184 Msa0027740:three_prime_UTR 40.0%
AGTGAATTGTGGAGATTCCT+TGG + chr1_1:52322364-52322383 None:intergenic 40.0%
GAATCTCCACAATTCACTCT+TGG - chr1_1:52322366-52322385 Msa0027740:CDS 40.0%
! TATTCCGTACAGGGTTTTCA+AGG - chr1_1:52322524-52322543 Msa0027740:CDS 40.0%
AGACTGGTGTACATCTATGA+TGG - chr1_1:52322817-52322836 Msa0027740:intron 40.0%
TGTAAAATTGGAGGTGAGTG+GGG - chr1_1:52323063-52323082 Msa0027740:intron 40.0%
!! TTCTTGCTGTTACTAAGGAG+AGG - chr1_1:52323130-52323149 Msa0027740:CDS 40.0%
!! TCTTGCTGTTACTAAGGAGA+GGG - chr1_1:52323131-52323150 Msa0027740:CDS 40.0%
TCAATATCACCACCAAGTTC+TGG + chr1_1:52323371-52323390 None:intergenic 40.0%
!! ACTTGGTGGTGATATTGACT+TGG - chr1_1:52323373-52323392 Msa0027740:five_prime_UTR 40.0%
GACTATCCAAATTCCACTCT+TGG - chr1_1:52323593-52323612 Msa0027740:five_prime_UTR 40.0%
CATGAAAAAATGAGGGTCGA+GGG + chr1_1:52323688-52323707 None:intergenic 40.0%
ACATGAAAAAATGAGGGTCG+AGG + chr1_1:52323689-52323708 None:intergenic 40.0%
! GATAAGGTCTATTTTCGGCA+GGG - chr1_1:52323916-52323935 Msa0027740:five_prime_UTR 40.0%
GTATCCGAATCTACTCCTTA+TGG - chr1_1:52324002-52324021 Msa0027740:five_prime_UTR 40.0%
GGCTATAACAAACAGGAAAG+GGG - chr1_1:52324023-52324042 Msa0027740:five_prime_UTR 40.0%
!! TGGAATGGAATTTGTTGGGT+AGG + chr1_1:52324058-52324077 None:intergenic 40.0%
GTAGCTGGAATGGAATTTGT+TGG + chr1_1:52324063-52324082 None:intergenic 40.0%
! TAATGGTGAAACTAGCTTGG+TGG - chr1_1:52324101-52324120 Msa0027740:five_prime_UTR 40.0%
ATGACACAACAGTGAACATG+TGG + chr1_1:52324460-52324479 None:intergenic 40.0%
ACATGTTCACTGTTGTGTCA+TGG - chr1_1:52324459-52324478 Msa0027740:intron 40.0%
GCCCAAAATGAGGGCAAAAA+TGG + chr1_1:52320463-52320482 None:intergenic 45.0%
! CCCTAAAGTGCCCAAAATGA+GGG + chr1_1:52320472-52320491 None:intergenic 45.0%
! CCCTCATTTTGGGCACTTTA+GGG - chr1_1:52320469-52320488 Msa0027740:three_prime_UTR 45.0%
! CCTCATTTTGGGCACTTTAG+GGG - chr1_1:52320470-52320489 Msa0027740:three_prime_UTR 45.0%
GTTTCCACTAACATTTGGGC+GGG - chr1_1:52320541-52320560 Msa0027740:three_prime_UTR 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr1_1:52320688-52320707 None:intergenic 45.0%
! ACACAAAGGTGTGTGTTGTG+TGG + chr1_1:52320610-52320629 None:intergenic 45.0%
GTGGCTCAGATGTGTTGTAT+GGG + chr1_1:52320651-52320670 None:intergenic 45.0%
TGTGGCTCAGATGTGTTGTA+TGG + chr1_1:52320652-52320671 None:intergenic 45.0%
!! ATGCGATAGGGTTCTGAGAT+TGG - chr1_1:52320973-52320992 Msa0027740:three_prime_UTR 45.0%
! GTCATGTAGTGGTGCAGTTT+TGG - chr1_1:52321049-52321068 Msa0027740:three_prime_UTR 45.0%
!!! TGTAGTGGTGCAGTTTTGGA+AGG - chr1_1:52321053-52321072 Msa0027740:three_prime_UTR 45.0%
TGAGCACCAAGAGTGAATTG+TGG + chr1_1:52322375-52322394 None:intergenic 45.0%
!!! TAAAAAGCAGGGTTTTGGGC+AGG - chr1_1:52322463-52322482 Msa0027740:CDS 45.0%
TCTGCCTTGAAAACCCTGTA+CGG + chr1_1:52322531-52322550 None:intergenic 45.0%
TCATCATCGCTGAAGGAAAC+CGG + chr1_1:52322575-52322594 None:intergenic 45.0%
AGCTCAAAACCAAGCACTAG+AGG - chr1_1:52322614-52322633 Msa0027740:intron 45.0%
CAAAACCAAGCACTAGAGGT+CGG - chr1_1:52322618-52322637 Msa0027740:intron 45.0%
! TTTTCACAGAAGCCTGACCA+TGG + chr1_1:52322943-52322962 None:intergenic 45.0%
TGTGCAAGTACACAAGTCTC+TGG - chr1_1:52323038-52323057 Msa0027740:intron 45.0%
AGATACTCTCCATCATCGCA+TGG + chr1_1:52323192-52323211 None:intergenic 45.0%
CTGAGGATACTGTGTTCTTC+CGG - chr1_1:52323244-52323263 Msa0027740:five_prime_UTR 45.0%
TGAGGATACTGTGTTCTTCC+GGG - chr1_1:52323245-52323264 Msa0027740:five_prime_UTR 45.0%
AGAGCAAGACAAAACCTTCC+CGG + chr1_1:52323266-52323285 None:intergenic 45.0%
TTCGCAGAACAAGGCTAGAA+TGG - chr1_1:52323792-52323811 Msa0027740:five_prime_UTR 45.0%
! CGATAAGGTCTATTTTCGGC+AGG - chr1_1:52323915-52323934 Msa0027740:five_prime_UTR 45.0%
GATTCGGATACGCATATGTC+AGG + chr1_1:52323993-52324012 None:intergenic 45.0%
TCAATGAACGTTGGTGTAGC+TGG + chr1_1:52324078-52324097 None:intergenic 45.0%
GTGCTTGTGAAGTCCATTGA+CGG - chr1_1:52324273-52324292 Msa0027740:five_prime_UTR 45.0%
! TATTTAGGGTCATGGTGTGC+AGG - chr1_1:52324378-52324397 Msa0027740:intron 45.0%
! ATTTAGGGTCATGGTGTGCA+GGG - chr1_1:52324379-52324398 Msa0027740:intron 45.0%
CTGCACTCTCTGAACTAATC+AGG - chr1_1:52324515-52324534 Msa0027740:intron 45.0%
! GCCCTCATTTTGGGCACTTT+AGG - chr1_1:52320468-52320487 Msa0027740:three_prime_UTR 50.0%
! CCCCTAAAGTGCCCAAAATG+AGG + chr1_1:52320473-52320492 None:intergenic 50.0%
!!! TGGGCACTTTAGGGGCATTT+TGG - chr1_1:52320478-52320497 Msa0027740:three_prime_UTR 50.0%
!! TCTTGGTGCTCAGTCCTTTG+AGG - chr1_1:52322383-52322402 Msa0027740:CDS 50.0%
! TTTCAAGGCAGAAGTGCAGC+TGG - chr1_1:52322539-52322558 Msa0027740:CDS 50.0%
GGCATCTTCATCATCGCTGA+AGG + chr1_1:52322582-52322601 None:intergenic 50.0%
AAGCACGCAGGTTTGTCGAA+TGG - chr1_1:52323097-52323116 Msa0027740:CDS 50.0%
CCTCAGCTTGCCCAATCATA+TGG + chr1_1:52323230-52323249 None:intergenic 50.0%
CCATATGATTGGGCAAGCTG+AGG - chr1_1:52323227-52323246 Msa0027740:exon 50.0%
GATACTGTGTTCTTCCGGGA+AGG - chr1_1:52323249-52323268 Msa0027740:five_prime_UTR 50.0%
GTTCTGGTGCAAACCGGAAA+AGG + chr1_1:52323355-52323374 None:intergenic 50.0%
! TTCCGGTTTGCACCAGAACT+TGG - chr1_1:52323356-52323375 Msa0027740:five_prime_UTR 50.0%
! CACCAAGTTCTGGTGCAAAC+CGG + chr1_1:52323361-52323380 None:intergenic 50.0%
! AGGTCTATTTTCGGCAGGGT+TGG - chr1_1:52323920-52323939 Msa0027740:five_prime_UTR 50.0%
ACAAAATAGAGCTGGGTGCC+TGG - chr1_1:52323962-52323981 Msa0027740:five_prime_UTR 50.0%
CGCATATGTCAGGCAAATCC+AGG + chr1_1:52323983-52324002 None:intergenic 50.0%
GAACGTTGGTGTAGCTGGAA+TGG + chr1_1:52324073-52324092 None:intergenic 50.0%
GTGTCAGCATGCATTTCCCT+TGG - chr1_1:52324123-52324142 Msa0027740:five_prime_UTR 50.0%
! AGTCCATTGACGGTGCCAAT+AGG - chr1_1:52324283-52324302 Msa0027740:five_prime_UTR 50.0%
TCTCCTATTGGCACCGTCAA+TGG + chr1_1:52324289-52324308 None:intergenic 50.0%
CTGGACAACGAATGAGATGC+AGG + chr1_1:52324329-52324348 None:intergenic 50.0%
TTCGTTGTCCAGTGAAGAGC+AGG - chr1_1:52324337-52324356 Msa0027740:five_prime_UTR 50.0%
TCCACTAACATTTGGGCGGG+TGG - chr1_1:52320544-52320563 Msa0027740:three_prime_UTR 55.0%
TCCTGGTGCTCAGTCCTTTG+AGG - chr1_1:52322182-52322201 Msa0027740:three_prime_UTR 55.0%
ACCTCAAAGGACTGAGCACC+AGG + chr1_1:52322186-52322205 None:intergenic 55.0%
TGCAGCTGGAGCTGATAGTC+CGG - chr1_1:52322553-52322572 Msa0027740:CDS 55.0%
CCTTTCCGACCTCTAGTGCT+TGG + chr1_1:52322626-52322645 None:intergenic 55.0%
CCAAGCACTAGAGGTCGGAA+AGG - chr1_1:52322623-52322642 Msa0027740:intron 55.0%
TTTCAACGCAGCTCCTGCCA+TGG - chr1_1:52322923-52322942 Msa0027740:intron 55.0%
GAGTGCTTTGCAAAGCACGC+AGG - chr1_1:52323085-52323104 Msa0027740:CDS 55.0%
GTTCGTGGACCATGCGATGA+TGG - chr1_1:52323180-52323199 Msa0027740:CDS 55.0%
CGGTTTGCACCAGAACTTGG+TGG - chr1_1:52323359-52323378 Msa0027740:five_prime_UTR 55.0%
TTGATCATGCCGGATGCGAG+TGG - chr1_1:52324167-52324186 Msa0027740:five_prime_UTR 55.0%
CTCACATCTCCACTCGCATC+CGG + chr1_1:52324179-52324198 None:intergenic 55.0%
GCCACCCGCCCAAATGTTAG+TGG + chr1_1:52320548-52320567 None:intergenic 60.0%
CATTTGGGCGGGTGGCACTT+TGG - chr1_1:52320552-52320571 Msa0027740:three_prime_UTR 60.0%
GGAGTGATCGACACGCTCGA+AGG - chr1_1:52322143-52322162 Msa0027740:three_prime_UTR 60.0%
CACAGAAGCCTGACCATGGC+AGG + chr1_1:52322939-52322958 None:intergenic 60.0%
AGGGTCATGGTGTGCAGGGT+TGG - chr1_1:52324383-52324402 Msa0027740:intron 60.0%
GGAGCGATCTACGCGCTCCA+AGG - chr1_1:52322344-52322363 Msa0027740:CDS 65.0%
ACGCAGCTCCTGCCATGGTC+AGG - chr1_1:52322928-52322947 Msa0027740:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 52320447 52324672 52320447 ID=Msa0027740;Name=Msa0027740
chr1_1 mRNA 52320447 52324672 52320447 ID=Msa0027740-mRNA-1;Parent=Msa0027740;Name=Msa0027740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=1259|0.8|1|1|0.4|0.33|6|1431|161
chr1_1 exon 52320447 52321320 52320447 ID=Msa0027740-mRNA-1:exon:15363;Parent=Msa0027740-mRNA-1
chr1_1 exon 52321668 52321747 52321668 ID=Msa0027740-mRNA-1:exon:15362;Parent=Msa0027740-mRNA-1
chr1_1 exon 52321849 52322583 52321849 ID=Msa0027740-mRNA-1:exon:15361;Parent=Msa0027740-mRNA-1
chr1_1 exon 52322715 52322786 52322715 ID=Msa0027740-mRNA-1:exon:15360;Parent=Msa0027740-mRNA-1
chr1_1 exon 52323072 52324374 52323072 ID=Msa0027740-mRNA-1:exon:15359;Parent=Msa0027740-mRNA-1
chr1_1 exon 52324561 52324672 52324561 ID=Msa0027740-mRNA-1:exon:15358;Parent=Msa0027740-mRNA-1
chr1_1 five_prime_UTR 52324561 52324672 52324561 ID=Msa0027740-mRNA-1:five_prime_utr;Parent=Msa0027740-mRNA-1
chr1_1 five_prime_UTR 52323228 52324374 52323228 ID=Msa0027740-mRNA-1:five_prime_utr;Parent=Msa0027740-mRNA-1
chr1_1 CDS 52323072 52323227 52323072 ID=Msa0027740-mRNA-1:cds;Parent=Msa0027740-mRNA-1
chr1_1 CDS 52322715 52322786 52322715 ID=Msa0027740-mRNA-1:cds;Parent=Msa0027740-mRNA-1
chr1_1 CDS 52322326 52322583 52322326 ID=Msa0027740-mRNA-1:cds;Parent=Msa0027740-mRNA-1
chr1_1 three_prime_UTR 52321849 52322325 52321849 ID=Msa0027740-mRNA-1:three_prime_utr;Parent=Msa0027740-mRNA-1
chr1_1 three_prime_UTR 52321668 52321747 52321668 ID=Msa0027740-mRNA-1:three_prime_utr;Parent=Msa0027740-mRNA-1
chr1_1 three_prime_UTR 52320447 52321320 52320447 ID=Msa0027740-mRNA-1:three_prime_utr;Parent=Msa0027740-mRNA-1
Gene Sequence

>Msa0027740

ATGTGTTGTTTTGATAAAAAGGGAATCAGGTATTCTGAAAATGTGATCACAATCATGGGTTTAGAAGCTATTTTATTTCAGAAATCATTTTTCAAGCAATTTTATGGATCTGTGACAAAGTTGAACTATGCAACATTAAGGCTTGGTTTCATTAAGGAACGTGTTAAGGAGCGATCTACGCGCTCCAAGGAATCTCCACAATTCACTCTTGGTGCTCAGTCCTTTGAGGGTTTTCAAGGCAGAAGTGCAGCTGGAGCTGATAGTCCGGTTTCCTTCAGCGATGATGAAGATGCCATGCCAACATTAAGCTCAAAACCAAGCACTAGAGGTCGGAAAGGATCTGTTGCATCTAATTGTAAACACCATCACGATATTAGTCTTCTCTTTGGCATTTTGCAAAACCTTTGCAGATTTGTTAGCTTCTATTCAATTCGCCTCTCACCTTTTTTTTTCTTTCTTTCAATTAGAAAAATTGAGTTTTTCTAA
Protein sequence

>Msa0027740

MCCFDKKGIRYSENVITIMGLEAILFQKSFFKQFYGSVTKLNYATLRLGFIKERVKERSTRSKESPQFTLGAQSFEGFQGRSAAGADSPVSFSDDEDAMPTLSSKPSTRGRKGSVASNCKHHHDISLLFGILQNLCRFVSFYSIRLSPFFFFLSIRKIEFF*