AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027830 MtrunA17_Chr1g0184241 96.730 367 12 0 1 367 1 367 0.0 745
Msa0027830 MtrunA17_Chr8g0354261 52.235 358 163 2 18 367 17 374 1.72e-134 389
Msa0027830 MtrunA17_Chr8g0354241 52.235 358 163 2 18 367 17 374 5.47e-134 387
Msa0027830 MtrunA17_Chr1g0187821 49.587 363 175 4 13 367 8 370 1.80e-125 365
Msa0027830 MtrunA17_Chr2g0311761 50.420 357 171 4 17 367 16 372 3.87e-125 365
Msa0027830 MtrunA17_Chr6g0472861 49.457 368 172 6 13 367 7 373 4.86e-124 362
Msa0027830 MtrunA17_Chr2g0311831 49.438 356 175 2 17 367 16 371 4.78e-123 359
Msa0027830 MtrunA17_Chr2g0311921 49.859 355 172 3 19 367 4 358 1.59e-122 357
Msa0027830 MtrunA17_Chr1g0187811 49.863 365 168 5 18 367 129 493 4.83e-122 361
Msa0027830 MtrunA17_Chr1g0187831 48.333 360 175 4 18 366 14 373 2.00e-121 356
Msa0027830 MtrunA17_Chr8g0336751 47.696 369 188 2 4 367 29 397 4.88e-121 355
Msa0027830 MtrunA17_Chr8g0364471 46.648 358 182 4 18 367 17 373 4.91e-119 349
Msa0027830 MtrunA17_Chr8g0336781 46.991 349 181 2 23 367 52 400 2.00e-118 348
Msa0027830 MtrunA17_Chr8g0336851 46.802 344 180 1 27 367 21 364 7.28e-118 346
Msa0027830 MtrunA17_Chr4g0055591 47.458 354 177 3 20 367 11 361 2.80e-117 344
Msa0027830 MtrunA17_Chr7g0225881 47.268 366 180 5 13 367 7 370 8.09e-117 343
Msa0027830 MtrunA17_Chr2g0311861 48.588 354 157 4 19 367 14 347 2.16e-116 341
Msa0027830 MtrunA17_Chr8g0336631 47.727 352 174 4 23 367 17 365 4.09e-116 341
Msa0027830 MtrunA17_Chr8g0348081 47.278 349 181 1 22 367 16 364 7.04e-116 341
Msa0027830 MtrunA17_Chr7g0235951 45.531 358 186 3 18 367 17 373 3.35e-115 339
Msa0027830 MtrunA17_Chr2g0311701 47.091 361 178 5 18 367 17 375 8.17e-115 338
Msa0027830 MtrunA17_Chr8g0336761 46.023 352 181 3 22 367 16 364 4.13e-114 336
Msa0027830 MtrunA17_Chr8g0336861 45.609 353 183 4 22 367 16 366 7.85e-114 335
Msa0027830 MtrunA17_Chr7g0236011 48.045 358 177 3 18 367 17 373 1.17e-113 335
Msa0027830 MtrunA17_Chr1g0167951 44.847 359 186 6 16 367 2 355 1.04e-111 330
Msa0027830 MtrunA17_Chr1g0167961 45.658 357 186 5 17 367 18 372 8.98e-109 323
Msa0027830 MtrunA17_Chr2g0311681 45.833 360 184 4 18 367 11 369 1.60e-108 322
Msa0027830 MtrunA17_Chr7g0247991 46.260 361 185 3 15 367 14 373 5.82e-108 321
Msa0027830 MtrunA17_Chr4g0066121 47.042 355 175 7 17 362 10 360 6.65e-108 320
Msa0027830 MtrunA17_Chr1g0167911 45.531 358 182 5 17 366 3 355 8.01e-108 320
Msa0027830 MtrunA17_Chr2g0311711 45.304 362 190 4 13 367 10 370 1.18e-107 320
Msa0027830 MtrunA17_Chr8g0335411 46.927 358 181 3 18 367 17 373 3.82e-107 319
Msa0027830 MtrunA17_Chr2g0311691 45.000 360 187 4 18 367 11 369 3.63e-105 313
Msa0027830 MtrunA17_Chr7g0266651 42.693 349 189 5 18 358 8 353 2.07e-100 301
Msa0027830 MtrunA17_Chr2g0311741 48.013 302 153 3 69 367 27 327 8.34e-99 296
Msa0027830 MtrunA17_Chr4g0066991 42.936 361 177 4 15 367 14 353 2.12e-97 293
Msa0027830 MtrunA17_Chr1g0161041 44.915 354 187 5 18 366 44 394 2.17e-95 290
Msa0027830 MtrunA17_Chr1g0161081 43.785 354 191 5 18 366 21 371 2.30e-95 288
Msa0027830 MtrunA17_Chr1g0167931 41.573 356 163 6 17 367 3 318 2.53e-93 281
Msa0027830 MtrunA17_Chr1g0161111 43.220 354 193 5 18 366 80 430 2.01e-92 283
Msa0027830 MtrunA17_Chr7g0235981 41.061 358 174 4 16 367 1 327 2.87e-90 274
Msa0027830 MtrunA17_Chr4g0011311 42.960 277 155 2 14 288 13 288 1.47e-80 248
Msa0027830 MtrunA17_Chr8g0362741 41.818 275 146 3 14 288 13 273 4.11e-71 223
Msa0027830 MtrunA17_Chr8g0345831 34.718 337 209 3 38 367 11 343 2.94e-65 210
Msa0027830 MtrunA17_Chr8g0336801 56.410 156 65 1 215 367 1 156 5.55e-63 198
Msa0027830 MtrunA17_Chr3g0128001 36.391 338 201 7 37 366 5 336 1.72e-60 198
Msa0027830 MtrunA17_Chr8g0336871 53.107 177 74 2 191 364 1 171 3.19e-59 189
Msa0027830 MtrunA17_Chr2g0311631 32.174 345 222 4 32 367 20 361 4.26e-58 192
Msa0027830 MtrunA17_Chr8g0336831 41.304 230 130 2 22 248 16 243 5.12e-58 189
Msa0027830 MtrunA17_Chr7g0242551 33.828 337 207 6 34 355 15 350 2.70e-56 187
Msa0027830 MtrunA17_Chr6g0455481 34.675 323 192 9 43 355 17 330 3.67e-56 187
Msa0027830 MtrunA17_Chr4g0006371 33.815 346 204 7 34 355 14 358 3.32e-55 185
Msa0027830 MtrunA17_Chr3g0093741 31.014 345 223 5 32 367 16 354 4.94e-54 181
Msa0027830 MtrunA17_Chr1g0179801 31.081 370 225 5 5 354 1 360 9.82e-54 181
Msa0027830 MtrunA17_Chr1g0184161 34.320 338 202 6 40 366 10 338 2.85e-53 179
Msa0027830 MtrunA17_Chr1g0184151 33.533 334 208 5 40 365 10 337 1.63e-52 177
Msa0027830 MtrunA17_Chr3g0093761 31.014 345 222 6 32 367 16 353 2.75e-52 177
Msa0027830 MtrunA17_Chr7g0265351 32.353 306 193 4 69 367 39 337 1.03e-51 175
Msa0027830 MtrunA17_Chr7g0220001 34.036 332 194 9 43 365 16 331 1.72e-51 174
Msa0027830 MtrunA17_Chr1g0184121 33.025 324 208 4 40 357 9 329 2.79e-51 174
Msa0027830 MtrunA17_Chr3g0093751 30.145 345 226 5 32 367 16 354 5.59e-51 174
Msa0027830 MtrunA17_Chr5g0437181 31.503 346 222 6 25 358 5 347 3.53e-50 172
Msa0027830 MtrunA17_Chr7g0265221 32.782 363 216 10 29 364 21 382 4.00e-49 169
Msa0027830 MtrunA17_Chr5g0412671 33.939 330 201 8 39 355 9 334 4.17e-49 168
Msa0027830 MtrunA17_Chr5g0412651 34.921 315 189 7 49 351 19 329 6.93e-49 168
Msa0027830 MtrunA17_Chr1g0184101 31.761 318 208 4 40 351 9 323 7.10e-49 168
Msa0027830 MtrunA17_Chr3g0113641 31.161 353 214 7 22 355 3 345 1.02e-48 168
Msa0027830 MtrunA17_Chr1g0184111 31.481 324 213 4 40 357 9 329 1.35e-48 167
Msa0027830 MtrunA17_Chr3g0109041 29.942 344 220 7 34 362 10 347 2.10e-48 167
Msa0027830 MtrunA17_Chr7g0220011 33.129 326 196 9 43 357 14 328 1.07e-47 164
Msa0027830 MtrunA17_Chr7g0250511 33.230 322 201 6 36 348 16 332 4.48e-47 163
Msa0027830 MtrunA17_Chr5g0412681 34.343 297 176 6 69 355 33 320 4.76e-47 163
Msa0027830 MtrunA17_Chr8g0371931 31.757 296 184 6 45 328 16 305 9.19e-47 163
Msa0027830 MtrunA17_Chr4g0045441 32.095 296 179 5 85 361 48 340 3.05e-46 161
Msa0027830 MtrunA17_Chr5g0426891 31.511 311 194 6 69 367 39 342 3.41e-46 160
Msa0027830 MtrunA17_Chr7g0239111 29.721 323 220 5 33 350 19 339 2.19e-45 159
Msa0027830 MtrunA17_Chr3g0102041 31.849 292 181 6 49 328 20 305 2.29e-45 159
Msa0027830 MtrunA17_Chr4g0045431 33.533 334 185 11 46 356 16 335 3.65e-45 158
Msa0027830 MtrunA17_Chr5g0421101 29.855 345 224 8 33 367 12 348 9.75e-45 157
Msa0027830 MtrunA17_Chr5g0420941 29.480 346 224 8 33 367 10 346 2.30e-44 156
Msa0027830 MtrunA17_Chr7g0239821 30.312 320 216 5 44 358 39 356 7.39e-44 155
Msa0027830 MtrunA17_Chr5g0421091 30.058 346 221 10 34 367 11 347 8.36e-44 155
Msa0027830 MtrunA17_Chr8g0371921 31.502 273 170 5 68 328 38 305 1.36e-43 154
Msa0027830 MtrunA17_Chr7g0239101 29.155 343 212 8 33 358 19 347 2.07e-43 154
Msa0027830 MtrunA17_Chr8g0375571 30.294 340 215 8 33 358 10 341 3.04e-43 153
Msa0027830 MtrunA17_Chr5g0421011 29.395 347 223 9 33 367 12 348 6.18e-43 152
Msa0027830 MtrunA17_Chr4g0045411 30.476 315 194 7 57 349 16 327 1.79e-42 151
Msa0027830 MtrunA17_Chr5g0423221 29.326 341 222 9 33 362 36 368 2.21e-42 152
Msa0027830 MtrunA17_Chr2g0296371 29.483 329 180 5 69 367 50 356 3.00e-42 151
Msa0027830 MtrunA17_Chr1g0162361 31.269 323 192 8 49 350 8 321 3.47e-42 150
Msa0027830 MtrunA17_Chr5g0420901 29.565 345 223 9 34 367 12 347 1.17e-41 149
Msa0027830 MtrunA17_Chr5g0405411 31.164 292 183 6 49 328 20 305 1.27e-41 149
Msa0027830 MtrunA17_Chr4g0045471 31.737 334 197 9 49 356 8 336 1.75e-41 149
Msa0027830 MtrunA17_Chr8g0364161 43.709 151 82 2 13 161 12 161 1.76e-41 144
Msa0027830 MtrunA17_Chr7g0239091 28.840 319 210 5 45 358 136 442 3.64e-41 150
Msa0027830 MtrunA17_Chr8g0375671 26.822 343 239 7 34 367 18 357 3.67e-41 148
Msa0027830 MtrunA17_Chr3g0126741 30.537 298 184 7 60 341 50 340 4.34e-41 148
Msa0027830 MtrunA17_Chr8g0375701 28.177 362 236 10 21 367 3 355 5.04e-41 147
Msa0027830 MtrunA17_Chr5g0420981 27.545 334 230 5 33 358 17 346 5.21e-41 147
Msa0027830 MtrunA17_Chr1g0162351 28.963 328 201 7 49 349 51 373 6.10e-41 148
Msa0027830 MtrunA17_Chr8g0370711 30.448 335 213 11 46 367 27 354 6.47e-41 147
Msa0027830 MtrunA17_Chr5g0423201 29.107 347 225 9 33 367 12 349 8.41e-41 147
Msa0027830 MtrunA17_Chr5g0423211 28.736 348 226 10 33 367 12 350 1.60e-40 146
Msa0027830 MtrunA17_Chr7g0239121 28.012 332 231 6 33 358 15 344 3.37e-40 145
Msa0027830 MtrunA17_Chr1g0191201 30.211 331 202 9 44 353 32 354 5.31e-40 145
Msa0027830 MtrunA17_Chr5g0423251 27.528 356 218 9 33 367 12 348 7.97e-40 144
Msa0027830 MtrunA17_Chr1g0162321 28.659 328 202 7 49 349 51 373 8.92e-40 145
Msa0027830 MtrunA17_Chr5g0423191 27.988 343 211 8 44 367 23 348 2.95e-39 142
Msa0027830 MtrunA17_Chr8g0365241 26.946 334 231 6 33 358 22 350 6.64e-39 142
Msa0027830 MtrunA17_Chr2g0314391 28.732 355 217 13 33 367 35 373 7.53e-39 142
Msa0027830 MtrunA17_Chr8g0370721 30.149 335 214 10 46 367 27 354 8.18e-39 141
Msa0027830 MtrunA17_Chr8g0375601 27.168 346 236 7 34 367 11 352 8.48e-39 142
Msa0027830 MtrunA17_Chr2g0314401 29.341 334 215 10 46 367 30 354 1.46e-38 141
Msa0027830 MtrunA17_Chr5g0421041 26.346 353 224 8 33 367 12 346 2.67e-38 140
Msa0027830 MtrunA17_Chr4g0045451 30.392 306 186 6 64 350 32 329 3.02e-38 140
Msa0027830 MtrunA17_Chr2g0314381 28.313 332 218 10 39 358 48 371 5.95e-38 140
Msa0027830 MtrunA17_Chr5g0439011 31.597 288 169 7 66 339 2 275 1.62e-37 137
Msa0027830 MtrunA17_Chr3g0125201 31.636 275 174 6 69 335 3 271 2.92e-37 136
Msa0027830 MtrunA17_Chr3g0121141 31.250 272 179 4 68 335 3 270 4.66e-37 135
Msa0027830 MtrunA17_Chr6g0474391 31.068 309 195 5 45 339 43 347 1.02e-36 136
Msa0027830 MtrunA17_Chr5g0420951 26.685 356 243 7 24 367 6 355 1.71e-36 135
Msa0027830 MtrunA17_Chr5g0424201 29.063 320 203 7 43 348 18 327 2.80e-36 134
Msa0027830 MtrunA17_Chr4g0050031 28.239 301 208 5 69 362 62 361 3.41e-36 135
Msa0027830 MtrunA17_Chr8g0336791 37.989 179 106 2 22 197 16 192 6.66e-36 129
Msa0027830 MtrunA17_Chr3g0145171 29.703 303 199 8 49 340 30 329 8.05e-36 133
Msa0027830 MtrunA17_Chr1g0204181 29.155 343 209 9 37 353 26 360 1.86e-35 133
Msa0027830 MtrunA17_Chr3g0145181 29.021 286 188 6 67 340 47 329 3.45e-35 132
Msa0027830 MtrunA17_Chr5g0398291 28.190 337 218 8 34 350 8 340 3.97e-35 132
Msa0027830 MtrunA17_Chr7g0235991 38.000 150 91 1 60 207 12 161 1.04e-34 126
Msa0027830 MtrunA17_Chr8g0375681 28.000 275 186 5 101 367 15 285 1.10e-34 129
Msa0027830 MtrunA17_Chr2g0332191 31.290 310 175 9 58 348 44 334 1.80e-34 130
Msa0027830 MtrunA17_Chr5g0424211 27.273 308 204 5 43 337 16 316 2.10e-34 129
Msa0027830 MtrunA17_Chr2g0289341 30.216 278 172 6 68 334 3 269 2.24e-34 129
Msa0027830 MtrunA17_Chr2g0319491 29.893 281 187 4 69 347 33 305 2.75e-34 129
Msa0027830 MtrunA17_Chr1g0168001 37.427 171 95 5 19 180 5 172 3.32e-34 124
Msa0027830 MtrunA17_Chr3g0145201 29.021 286 188 6 67 340 682 964 2.09e-33 131
Msa0027830 MtrunA17_Chr4g0045461 29.755 326 195 9 46 350 16 328 2.62e-32 124
Msa0027830 MtrunA17_Chr3g0087031 29.537 281 182 7 86 357 78 351 3.76e-32 124
Msa0027830 MtrunA17_Chr8g0364171 46.364 110 59 0 179 288 17 126 4.32e-32 117
Msa0027830 MtrunA17_Chr1g0167921 48.571 105 54 0 183 287 52 156 7.14e-32 118
Msa0027830 MtrunA17_Chr7g0232161 29.181 281 176 8 33 300 24 294 8.06e-32 122
Msa0027830 MtrunA17_Chr1g0162191 24.138 319 233 6 42 353 20 336 3.89e-31 121
Msa0027830 MtrunA17_Chr3g0125421 27.356 329 211 10 43 351 14 334 1.23e-30 119
Msa0027830 MtrunA17_Chr3g0114861 27.523 327 213 7 34 347 6 321 6.30e-30 117
Msa0027830 MtrunA17_Chr3g0130391 29.429 333 208 10 28 339 23 349 7.33e-30 118
Msa0027830 MtrunA17_Chr6g0488511 27.723 303 188 8 69 355 3 290 1.89e-29 115
Msa0027830 MtrunA17_Chr8g0351101 28.242 347 204 8 36 353 24 354 3.70e-29 115
Msa0027830 MtrunA17_Chr7g0239071 27.839 273 175 6 99 358 29 292 1.29e-28 113
Msa0027830 MtrunA17_Chr5g0420721 28.856 201 139 2 171 367 50 250 6.39e-28 110
Msa0027830 MtrunA17_Chr8g0384461 27.520 367 218 12 29 365 6 354 2.35e-27 110
Msa0027830 MtrunA17_Chr2g0285931 26.557 305 193 8 62 347 21 313 8.81e-27 108
Msa0027830 MtrunA17_Chr4g0064781 27.273 286 194 6 63 340 44 323 9.98e-27 108
Msa0027830 MtrunA17_Chr3g0092531 27.986 293 186 6 69 347 6 287 4.36e-26 106
Msa0027830 MtrunA17_Chr1g0161101 37.222 180 100 4 147 323 327 496 9.85e-26 108
Msa0027830 MtrunA17_Chr3g0126761 31.937 191 127 2 178 366 42 231 2.88e-25 102
Msa0027830 MtrunA17_Chr4g0068891 30.769 299 170 14 69 347 20 301 1.09e-24 102
Msa0027830 MtrunA17_Chr8g0384481 26.220 328 214 10 44 352 37 355 1.41e-24 103
Msa0027830 MtrunA17_Chr3g0105281 28.520 277 164 10 69 326 34 295 4.03e-24 101
Msa0027830 MtrunA17_Chr1g0148771 25.237 317 200 9 60 362 57 350 1.44e-23 100
Msa0027830 MtrunA17_Chr8g0336841 51.807 83 37 1 288 367 9 91 1.53e-23 93.2
Msa0027830 MtrunA17_Chr4g0037611 33.962 159 98 2 190 347 1 153 4.09e-23 95.1
Msa0027830 MtrunA17_Chr5g0420881 31.469 143 97 1 226 367 2 144 4.79e-23 94.0
Msa0027830 MtrunA17_Chr2g0311751 38.333 120 72 1 63 180 21 140 6.27e-23 94.4
Msa0027830 MtrunA17_Chr7g0247741 31.183 279 156 10 91 348 30 293 1.51e-22 96.7
Msa0027830 MtrunA17_Chr3g0114871 27.237 257 165 6 45 288 18 265 3.48e-22 94.7
Msa0027830 MtrunA17_Chr4g0075471 34.965 143 83 3 205 346 10 143 5.01e-22 91.7
Msa0027830 MtrunA17_Chr2g0314371 25.402 311 190 10 39 317 23 323 1.20e-21 94.4
Msa0027830 MtrunA17_Chr1g0170631 29.412 187 129 2 178 362 1 186 2.61e-21 90.5
Msa0027830 MtrunA17_Chr2g0313111 27.143 280 167 10 89 347 42 305 2.63e-21 93.6
Msa0027830 MtrunA17_Chr5g0394071 33.136 169 105 3 185 352 7 168 2.63e-21 90.1
Msa0027830 MtrunA17_Chr3g0092581 33.333 159 101 3 192 347 3 159 1.65e-20 88.2
Msa0027830 MtrunA17_Chr8g0358941 25.249 301 189 10 69 347 27 313 2.58e-20 90.9
Msa0027830 MtrunA17_Chr5g0407781 25.641 312 200 9 69 367 5 297 3.14e-20 89.7
Msa0027830 MtrunA17_Chr8g0348951 30.990 313 173 14 69 358 10 302 3.94e-20 90.1
Msa0027830 MtrunA17_Chr6g0486831 27.609 297 175 10 86 350 35 323 5.06e-20 90.1
Msa0027830 MtrunA17_Chr1g0194321 25.329 304 192 7 69 347 20 313 2.84e-19 87.8
Msa0027830 MtrunA17_Chr8g0389941 25.784 287 185 9 89 350 51 334 2.85e-19 87.8
Msa0027830 MtrunA17_Chr1g0158011 31.250 176 116 4 169 339 58 233 4.20e-19 85.9
Msa0027830 MtrunA17_Chr2g0311611 50.000 70 28 1 226 288 2 71 7.43e-19 80.1
Msa0027830 MtrunA17_Chr7g0233661 37.063 143 80 3 228 367 24 159 3.53e-18 80.9
Msa0027830 MtrunA17_Chr1g0158021 25.571 219 148 7 69 279 49 260 3.53e-17 80.5
Msa0027830 MtrunA17_Chr4g0052251 24.839 310 191 13 62 347 22 313 5.01e-17 81.3
Msa0027830 MtrunA17_Chr2g0319521 36.697 109 69 0 180 288 16 124 5.55e-17 77.0
Msa0027830 MtrunA17_Chr7g0219991 42.056 107 59 3 181 286 249 353 4.24e-16 78.6
Msa0027830 MtrunA17_Chr7g0219991 35.537 121 73 3 43 161 14 131 1.16e-11 65.5
Msa0027830 MtrunA17_Chr4g0009541 24.832 298 205 11 69 352 7 299 8.65e-16 77.4
Msa0027830 MtrunA17_Chr2g0311641 30.464 151 100 3 32 180 20 167 1.52e-15 73.6
Msa0027830 MtrunA17_Chr4g0064771 29.630 162 112 2 181 340 27 188 2.12e-15 74.3
Msa0027830 MtrunA17_Chr4g0004071 25.143 175 129 2 181 354 126 299 2.67e-14 72.8
Msa0027830 MtrunA17_Chr4g0004061 24.252 301 204 11 69 354 9 300 9.70e-14 71.2
Msa0027830 MtrunA17_Chr2g0311621 33.673 98 63 1 32 129 20 115 2.17e-13 66.2
Msa0027830 MtrunA17_Chr8g0375581 35.294 85 54 1 201 284 1 85 3.58e-13 64.7
Msa0027830 MtrunA17_Chr4g0009561 22.559 297 209 8 69 348 7 299 3.98e-13 69.3
Msa0027830 MtrunA17_Chr2g0293931 30.769 143 89 5 181 313 8 150 3.73e-12 65.1
Msa0027830 MtrunA17_Chr1g0158031 28.481 158 96 6 193 339 1 152 2.12e-11 62.4
Msa0027830 MtrunA17_Chr7g0256741 23.488 281 195 9 87 356 32 303 2.16e-11 64.3
Msa0027830 MtrunA17_Chr8g0354251 52.632 57 27 0 18 74 47 103 2.20e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027830 AT1G06620.1 50.565 354 170 3 19 367 12 365 3.59e-125 365
Msa0027830 AT1G06640.1 48.343 362 175 5 17 367 9 369 9.48e-117 343
Msa0027830 AT1G06650.2 47.253 364 180 5 15 367 7 369 1.39e-116 343
Msa0027830 AT5G59530.1 48.333 360 177 6 16 367 6 364 7.91e-116 341
Msa0027830 AT2G30830.1 48.611 360 171 7 17 367 4 358 9.60e-116 340
Msa0027830 AT1G04350.1 47.091 361 182 6 14 367 2 360 3.60e-114 337
Msa0027830 AT5G59540.1 47.645 361 179 6 16 367 7 366 6.35e-114 336
Msa0027830 AT5G43440.1 46.218 357 182 5 20 367 10 365 2.10e-113 335
Msa0027830 AT1G03410.2 47.911 359 175 7 19 367 5 361 2.39e-108 322
Msa0027830 AT1G03410.1 47.911 359 175 7 19 367 42 398 1.11e-107 321
Msa0027830 AT2G30840.1 46.832 363 181 8 15 367 2 362 1.37e-107 320
Msa0027830 AT1G06645.1 45.604 364 179 7 17 367 22 379 1.47e-107 320
Msa0027830 AT1G04380.1 46.809 329 167 4 43 367 21 345 1.12e-106 317
Msa0027830 AT1G03400.1 46.260 361 168 7 19 367 5 351 4.18e-106 316
Msa0027830 AT2G25450.1 44.972 358 188 6 17 367 4 359 1.07e-105 315
Msa0027830 AT5G43450.1 44.348 345 185 3 19 357 9 352 4.46e-104 311
Msa0027830 AT2G30840.3 46.006 363 178 9 15 367 2 356 6.91e-102 305
Msa0027830 AT3G61400.1 43.056 360 192 5 16 362 7 366 1.34e-101 305
Msa0027830 AT1G03400.2 42.931 389 168 8 19 367 5 379 1.58e-99 300
Msa0027830 AT1G06620.2 48.708 271 137 1 19 287 12 282 6.79e-92 277
Msa0027830 AT1G06640.2 46.570 277 142 2 17 287 9 285 1.44e-86 265
Msa0027830 AT1G06640.3 46.403 278 143 2 17 288 9 286 3.30e-86 263
Msa0027830 AT5G43440.2 44.604 278 149 3 20 292 10 287 4.61e-86 262
Msa0027830 AT5G59540.2 45.683 278 146 4 16 288 7 284 9.83e-85 259
Msa0027830 AT1G06650.1 44.643 280 149 2 15 288 7 286 1.31e-84 259
Msa0027830 AT5G43450.2 42.806 278 157 1 19 294 9 286 2.67e-82 253
Msa0027830 AT2G30840.2 46.429 280 141 5 15 287 2 279 4.11e-81 250
Msa0027830 AT3G61400.2 42.199 282 154 3 16 288 7 288 7.37e-78 241
Msa0027830 AT1G04380.2 45.161 248 133 2 43 290 21 265 4.39e-77 239
Msa0027830 AT3G12900.1 36.391 338 210 5 32 366 20 355 4.59e-68 218
Msa0027830 AT3G13610.1 36.438 365 222 6 9 367 1 361 5.49e-67 216
Msa0027830 AT1G55290.1 38.192 343 194 7 32 364 24 358 1.03e-63 207
Msa0027830 AT4G10500.1 32.822 326 215 2 45 366 20 345 2.15e-59 196
Msa0027830 AT2G36690.2 35.030 334 206 6 31 354 18 350 8.98e-58 192
Msa0027830 AT2G36690.1 35.030 334 206 6 31 354 18 350 8.98e-58 192
Msa0027830 AT4G10490.1 31.548 336 221 3 38 366 11 344 1.77e-57 191
Msa0027830 AT5G24530.1 33.626 342 206 7 37 365 5 338 2.11e-56 187
Msa0027830 AT2G38240.1 33.728 338 212 7 27 355 5 339 1.57e-54 183
Msa0027830 AT5G05600.1 32.479 351 214 8 24 358 17 360 5.07e-53 180
Msa0027830 AT3G11180.1 32.659 346 200 10 34 358 56 389 1.94e-49 171
Msa0027830 AT3G11180.2 32.653 343 198 10 34 355 56 386 2.73e-49 171
Msa0027830 AT3G51240.1 31.561 301 188 6 40 328 10 304 7.11e-48 166
Msa0027830 AT3G55970.1 30.347 346 225 7 25 355 5 349 9.31e-47 163
Msa0027830 AT2G44800.1 33.529 340 207 9 27 354 9 341 2.07e-45 159
Msa0027830 AT3G19000.1 30.931 333 200 7 42 348 1 329 5.47e-44 155
Msa0027830 AT5G12270.1 30.362 359 228 10 23 367 9 359 5.00e-43 153
Msa0027830 AT4G16330.2 29.934 304 192 7 69 362 67 359 9.81e-43 152
Msa0027830 AT3G21420.1 31.805 349 220 8 34 367 17 362 2.67e-42 151
Msa0027830 AT3G19010.1 32.476 311 181 8 55 340 10 316 7.64e-42 150
Msa0027830 AT3G19010.4 32.476 311 181 8 55 340 10 316 7.64e-42 150
Msa0027830 AT3G60290.1 32.024 331 208 8 32 351 14 338 3.39e-41 148
Msa0027830 AT1G78550.1 26.765 340 232 7 39 367 23 356 6.15e-40 145
Msa0027830 AT5G07480.1 31.677 322 191 9 45 348 24 334 1.19e-38 141
Msa0027830 AT1G77330.1 33.099 284 171 7 69 339 3 280 3.00e-38 139
Msa0027830 AT4G25300.1 27.941 340 223 9 42 367 25 356 1.87e-37 138
Msa0027830 AT1G17020.1 26.549 339 230 8 42 367 26 358 2.08e-37 138
Msa0027830 AT3G19010.3 30.717 293 180 8 55 340 10 286 2.22e-37 137
Msa0027830 AT5G08640.2 29.688 320 195 8 45 347 19 325 7.84e-37 136
Msa0027830 AT5G08640.1 29.688 320 195 8 45 347 19 325 7.84e-37 136
Msa0027830 AT5G05600.2 31.673 281 169 8 24 288 17 290 4.10e-36 133
Msa0027830 AT1G12010.1 30.072 276 173 5 70 335 8 273 6.57e-36 133
Msa0027830 AT4G22880.1 28.319 339 216 9 34 350 7 340 1.36e-35 133
Msa0027830 AT4G22880.2 28.319 339 216 9 34 350 7 340 1.36e-35 133
Msa0027830 AT4G22880.3 28.319 339 216 9 34 350 7 340 1.36e-35 133
Msa0027830 AT1G17010.1 27.168 346 225 10 39 367 23 358 3.71e-35 132
Msa0027830 AT1G62380.1 31.250 272 167 7 70 331 8 269 2.09e-34 129
Msa0027830 AT4G25310.1 28.522 291 192 7 86 367 70 353 2.85e-34 130
Msa0027830 AT5G63600.1 28.966 290 184 8 69 348 33 310 4.72e-34 128
Msa0027830 AT5G51810.1 29.448 326 209 5 43 353 40 359 7.43e-34 129
Msa0027830 AT5G63590.1 31.142 289 170 8 69 340 14 290 8.20e-34 127
Msa0027830 AT1G78550.2 26.619 278 192 5 98 367 5 278 8.25e-34 127
Msa0027830 AT4G25420.1 28.354 328 214 5 43 353 38 361 1.06e-33 129
Msa0027830 AT1G05010.1 31.022 274 168 6 70 332 5 268 1.22e-33 127
Msa0027830 AT3G51240.2 30.222 225 142 4 114 328 1 220 2.00e-33 125
Msa0027830 AT5G63600.2 29.210 291 183 9 69 348 33 311 3.34e-33 126
Msa0027830 AT4G16330.1 30.279 251 160 5 121 362 9 253 3.75e-33 124
Msa0027830 AT5G07200.1 27.829 327 211 5 37 345 29 348 8.98e-33 126
Msa0027830 AT3G55970.2 30.466 279 178 7 25 288 5 282 1.70e-32 124
Msa0027830 AT1G60980.1 28.267 329 210 7 45 353 36 358 1.82e-32 125
Msa0027830 AT1G15550.1 30.476 315 186 9 68 366 56 353 1.98e-32 125
Msa0027830 AT3G19000.2 29.893 281 167 7 42 296 1 277 2.47e-32 122
Msa0027830 AT1G50960.1 30.634 284 183 7 69 347 40 314 1.87e-30 119
Msa0027830 AT4G21200.1 29.210 291 177 9 68 347 41 313 1.39e-29 117
Msa0027830 AT1G80330.1 31.000 300 173 11 69 348 49 334 2.06e-28 114
Msa0027830 AT2G19590.1 29.293 297 188 10 69 355 11 295 4.44e-28 112
Msa0027830 AT5G51810.2 30.769 260 163 4 43 291 40 293 7.58e-28 111
Msa0027830 AT5G20400.1 29.213 267 170 8 86 340 64 323 1.98e-27 111
Msa0027830 AT5G63595.1 28.571 252 156 5 70 318 26 256 4.24e-27 108
Msa0027830 AT5G20550.1 28.621 290 184 10 69 340 40 324 5.76e-27 110
Msa0027830 AT3G19010.2 28.846 260 156 6 55 289 10 265 4.11e-26 106
Msa0027830 AT5G43935.1 27.119 295 180 9 65 348 13 283 1.42e-25 105
Msa0027830 AT1G44090.1 26.974 304 204 5 44 334 42 340 1.57e-25 106
Msa0027830 AT4G25420.2 29.412 255 163 4 43 284 38 288 3.52e-25 103
Msa0027830 AT4G25300.2 34.899 149 96 1 220 367 114 262 3.82e-25 103
Msa0027830 AT5G07480.2 34.197 193 111 5 165 348 40 225 9.56e-25 101
Msa0027830 AT1G30040.1 26.936 297 184 10 69 347 31 312 2.60e-24 102
Msa0027830 AT1G78440.1 25.503 298 190 9 69 347 18 302 5.33e-24 101
Msa0027830 AT1G80340.1 27.632 304 184 8 69 351 50 338 8.49e-24 101
Msa0027830 AT1G49390.1 25.688 327 204 12 45 348 19 329 2.13e-22 97.1
Msa0027830 AT1G47990.1 27.586 290 183 10 69 342 15 293 3.51e-22 96.3
Msa0027830 AT4G25310.2 24.828 290 176 7 86 367 70 325 3.69e-21 93.2
Msa0027830 AT2G34555.1 25.926 297 201 8 69 354 27 315 5.42e-21 93.2
Msa0027830 AT2G19590.2 29.213 267 167 10 99 355 26 280 7.15e-21 92.0
Msa0027830 AT4G21690.1 26.994 326 186 11 69 366 47 348 8.27e-21 92.8
Msa0027830 AT5G54000.2 26.950 282 173 11 84 346 63 330 1.17e-20 92.4
Msa0027830 AT5G58660.1 27.562 283 165 10 67 318 32 305 1.24e-20 92.4
Msa0027830 AT4G23340.1 27.184 309 193 10 67 358 8 301 3.95e-20 90.5
Msa0027830 AT1G14120.2 26.871 294 167 11 69 340 8 275 9.76e-20 89.0
Msa0027830 AT1G14120.1 26.871 294 167 11 69 340 8 275 9.76e-20 89.0
Msa0027830 AT1G14120.3 26.871 294 167 11 69 340 8 275 9.76e-20 89.0
Msa0027830 AT1G14130.1 26.871 294 167 11 69 340 9 276 1.83e-19 88.2
Msa0027830 AT5G63580.2 26.754 228 145 6 69 284 19 236 2.58e-19 86.7
Msa0027830 AT5G63580.1 26.754 228 145 6 69 284 19 236 3.84e-19 86.3
Msa0027830 AT3G47190.1 23.944 284 180 8 69 328 32 303 2.03e-18 85.5
Msa0027830 AT1G49390.2 25.969 258 172 8 102 348 1 250 5.16e-18 83.6
Msa0027830 AT4G23340.2 36.220 127 79 2 233 358 58 183 1.08e-17 81.3
Msa0027830 AT2G06960.1 36.029 136 71 4 220 354 25 145 4.43e-17 77.8
Msa0027830 AT4G16765.3 32.941 170 102 6 180 339 60 227 1.90e-16 78.2
Msa0027830 AT5G54000.1 26.136 264 162 11 102 346 1 250 2.36e-16 78.6
Msa0027830 AT4G16765.6 31.285 179 111 6 180 348 60 236 6.54e-16 77.0
Msa0027830 AT4G16765.1 31.285 179 111 6 180 348 60 236 6.54e-16 77.0
Msa0027830 AT4G16765.2 31.285 179 111 6 180 348 60 236 6.54e-16 77.0
Msa0027830 AT3G46500.4 29.310 174 114 3 185 350 3 175 5.52e-15 73.2
Msa0027830 AT5G58660.2 25.397 252 149 9 67 288 32 274 9.96e-15 74.3
Msa0027830 AT3G46490.2 26.236 263 167 8 89 326 34 294 1.43e-14 73.9
Msa0027830 AT1G30040.2 25.630 238 144 10 69 288 31 253 4.15e-14 72.0
Msa0027830 AT4G16765.5 37.288 118 66 4 237 348 75 190 1.20e-13 69.7
Msa0027830 AT1G35190.1 27.431 288 180 8 89 350 29 313 8.96e-13 68.9
Msa0027830 AT4G16765.4 32.000 125 76 4 180 295 60 184 6.34e-11 61.2

Find 93 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAATTCTTTCACTTCTT+TGG 0.152782 1_1:+52435281 None:intergenic
CGGAAGCATTAGGGCTAAAA+AGG 0.199221 1_1:-52433730 Msa0027830:CDS
ATATCTGTTTCCCTGTATTT+TGG 0.219075 1_1:+52432201 None:intergenic
GCTCAGATAGTGACTGAAAA+AGG 0.240796 1_1:+52435374 None:intergenic
AGAGATACTTAATGAGATTA+AGG 0.248416 1_1:-52435094 Msa0027830:CDS
CTGAATATCTTACTCACTTT+AGG 0.273277 1_1:-52432176 Msa0027830:CDS
GCCACTAATGCACCATGAAT+TGG 0.286367 1_1:+52433518 None:intergenic
TAATGTTATAGCCTAAAATA+AGG 0.296611 1_1:+52432123 None:intergenic
TGCTTTGGAACAGACTCTTT+TGG 0.301047 1_1:+52435189 None:intergenic
TGTTATGGATGACATGTTAA+AGG 0.301660 1_1:-52435016 Msa0027830:CDS
CCCAATTCATGGTGCATTAG+TGG 0.323816 1_1:-52433519 Msa0027830:CDS
TTGTTGCTAAAGCAGCTAAT+TGG 0.337101 1_1:-52434894 Msa0027830:CDS
GTTGATATTAACCCAATTCA+TGG 0.345728 1_1:-52433530 Msa0027830:CDS
GAATTAATGTCGGAAGCATT+AGG 0.346591 1_1:-52433740 Msa0027830:CDS
GTGGCACCAAATGTCAGTTC+TGG 0.356021 1_1:+52433635 None:intergenic
TTACTCACTTTAGGTCTAAA+GGG 0.361951 1_1:-52432167 Msa0027830:CDS
ATGAAAATCCACCAAAATAC+AGG 0.367647 1_1:-52432212 Msa0027830:CDS
ATAAGAGAGTGAAAGTTAGA+TGG 0.371566 1_1:+52431879 None:intergenic
TTGTACCATTCTATATATAA+TGG 0.374003 1_1:-52435424 None:intergenic
TTTAGGTCTAAAGGGCTTGA+TGG 0.377854 1_1:-52432159 Msa0027830:CDS
TGGAACATATTCTAAAACTA+AGG 0.385116 1_1:-52433775 Msa0027830:CDS
CGGTGTTCCAGTTTGTGTTA+TGG 0.390327 1_1:-52435031 Msa0027830:CDS
CTTACTCACTTTAGGTCTAA+AGG 0.391225 1_1:-52432168 Msa0027830:CDS
TTTGGATGGATAAAGAATCT+TGG 0.396258 1_1:+52435207 None:intergenic
ATGTCATCCATAACACAAAC+TGG 0.398643 1_1:+52435024 None:intergenic
AGGTTCTCCATCAAAATCAT+TGG 0.400401 1_1:-52433553 Msa0027830:CDS
CCACTAATGCACCATGAATT+GGG 0.403415 1_1:+52433519 None:intergenic
AACATGGGGTTTCTTTCAAA+TGG 0.404486 1_1:-52435061 Msa0027830:CDS
AAAGAACAAATGTTTCCCTT+TGG 0.405417 1_1:-52435327 Msa0027830:CDS
ACTATCAAATTTGTGCGGTC+TGG 0.409093 1_1:+52431964 None:intergenic
TGGATGCATACATCTGGATA+AGG 0.414588 1_1:-52431936 Msa0027830:three_prime_UTR
GAAGAAGTTGCATCATGCTT+TGG 0.416421 1_1:+52435174 None:intergenic
CCAAATGTCAGTTCTGGTTC+AGG 0.417953 1_1:+52433641 None:intergenic
GGAAGCAGTGATAAAATTCA+TGG 0.421207 1_1:-52433795 Msa0027830:CDS
GAATTTGATGAATCTAAAAC+TGG 0.425806 1_1:-52435267 Msa0027830:CDS
ATCATGGAAGTCAAACATAA+TGG 0.435298 1_1:+52434864 None:intergenic
AATTAATGTCGGAAGCATTA+GGG 0.442073 1_1:-52433739 Msa0027830:CDS
GATAAAGAATCTTGGAAGCT+TGG 0.442574 1_1:+52435215 None:intergenic
GTTGAGCATAGAGTACTTGC+TGG 0.445795 1_1:-52432321 Msa0027830:CDS
ATTCTCCTCCAAGATACTAT+TGG 0.446330 1_1:-52433584 Msa0027830:CDS
AGGAGAATTGTGAGGGATGA+TGG 0.451134 1_1:+52433599 None:intergenic
AGATACTATTGGTGGCCTAC+AGG 0.463666 1_1:-52433573 Msa0027830:CDS
TGCTGGAAGTGTTGGGCCAA+GGG 0.475316 1_1:-52432304 Msa0027830:CDS
GGTTCTCCATCAAAATCATT+GGG 0.478256 1_1:-52433552 Msa0027830:CDS
AGAGTACTTGCTGGAAGTGT+TGG 0.479336 1_1:-52432312 Msa0027830:CDS
TCAGATATGAACTCCTCTAT+AGG 0.481793 1_1:+52432234 None:intergenic
ATGCTTCCTACCTGCACACT+AGG 0.488049 1_1:+52434815 None:intergenic
GTAGGCCACCAATAGTATCT+TGG 0.493006 1_1:+52433576 None:intergenic
GAGTACTTGCTGGAAGTGTT+GGG 0.494648 1_1:-52432311 Msa0027830:CDS
ATTATGTTTGACTTCCATGA+TGG 0.494804 1_1:-52434862 Msa0027830:CDS
AATGTTATAGCCTAAAATAA+GGG 0.497070 1_1:+52432124 None:intergenic
TTGCTGGAAGTGTTGGGCCA+AGG 0.502531 1_1:-52432305 Msa0027830:CDS
TTGCTAAAGCAGCTAATTGG+AGG 0.502989 1_1:-52434891 Msa0027830:CDS
TGCTTCCTACCTGCACACTA+GGG 0.515187 1_1:+52434816 None:intergenic
AAGCATATCCCCTAGTGTGC+AGG 0.521193 1_1:-52434825 Msa0027830:intron
AAAGTTAGATACTTTAGTAA+TGG 0.523631 1_1:-52434925 Msa0027830:CDS
GAATCTAAAACTGGAGTGAA+AGG 0.523831 1_1:-52435258 Msa0027830:CDS
ATCTTGGAGGAGAATTGTGA+GGG 0.524200 1_1:+52433592 None:intergenic
TGATGGATCTGAATGCTTTG+TGG 0.529138 1_1:+52433616 None:intergenic
CCTGAACCAGAACTGACATT+TGG 0.532928 1_1:-52433641 Msa0027830:CDS
TTCTTTCAAATGGTGAATCA+CGG 0.539027 1_1:-52435051 Msa0027830:CDS
GGTGGCCATTATATATAGAA+TGG 0.539290 1_1:+52435419 None:intergenic
CACACTAGGGGATATGCTTG+TGG 0.546547 1_1:+52434829 None:intergenic
TGGCAAGCAACTGATGCCCT+TGG 0.550057 1_1:+52432288 None:intergenic
TGCTTGCGTTGGGGTACACG+TGG 0.562421 1_1:+52432268 None:intergenic
TAGTTAACATCTTCACCAAA+GGG 0.563563 1_1:+52435312 None:intergenic
GGAACATATTCTAAAACTAA+GGG 0.567844 1_1:-52433774 Msa0027830:CDS
CTCCTCCAAGATACTATTGG+TGG 0.570037 1_1:-52433581 Msa0027830:CDS
GTGAAAGGACTACTAGACTC+TGG 0.570699 1_1:-52435243 Msa0027830:CDS
TTAAGGAAGCATCAGAAACA+TGG 0.574471 1_1:-52435077 Msa0027830:CDS
TAAGGAAGCATCAGAAACAT+GGG 0.575444 1_1:-52435076 Msa0027830:CDS
ATAGTTAACATCTTCACCAA+AGG 0.575481 1_1:+52435311 None:intergenic
GGCCACCAATAGTATCTTGG+AGG 0.585904 1_1:+52433579 None:intergenic
TCACAGGATATGAAAAGTGT+AGG 0.591049 1_1:-52435122 Msa0027830:CDS
CAGGATATGAAAAGTGTAGG+AGG 0.593915 1_1:-52435119 Msa0027830:CDS
GGATATGCTTGTGGATCAAG+AGG 0.597744 1_1:+52434838 None:intergenic
GTTCCTGTGATAGATTTCAC+AGG 0.598500 1_1:-52435138 Msa0027830:CDS
TGCTAAAGCAGCTAATTGGA+GGG 0.606486 1_1:-52434890 Msa0027830:CDS
GGTGCATTAGTGGCAAACAT+AGG 0.609273 1_1:-52433509 Msa0027830:CDS
GTGGATCAAGAGGACCATCA+TGG 0.610191 1_1:+52434848 None:intergenic
AATATTATCAGAATTAATGT+CGG 0.611043 1_1:-52433750 Msa0027830:CDS
TATCCTGTGAAATCTATCAC+AGG 0.615068 1_1:+52435135 None:intergenic
TATCTTGGAGGAGAATTGTG+AGG 0.617497 1_1:+52433591 None:intergenic
GCTTCAAAGTTGAAACGTGG+TGG 0.618293 1_1:+52435401 None:intergenic
GTTTCATGAGCAACCTAGTG+AGG 0.619212 1_1:-52434983 Msa0027830:CDS
AAACATAGGTGACTTCATGC+AGG 0.629542 1_1:-52433495 Msa0027830:intron
ATAACATTAACATGCATGAG+TGG 0.629567 1_1:-52432109 Msa0027830:exon
TGAAAATCCACCAAAATACA+GGG 0.630610 1_1:-52432211 Msa0027830:CDS
GCTTCCTACCTGCACACTAG+GGG 0.647398 1_1:+52434817 None:intergenic
GTTCTGGTTCAGGACACGTA+GGG 0.647736 1_1:+52433651 None:intergenic
AGTTCTGGTTCAGGACACGT+AGG 0.660817 1_1:+52433650 None:intergenic
AAGGAAGCATCAGAAACATG+GGG 0.672091 1_1:-52435075 Msa0027830:CDS
TTTGCTTCAAAGTTGAAACG+TGG 0.681869 1_1:+52435398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAAAATTAGATTAG+GGG - chr1_1:52433885-52433904 Msa0027830:intron 10.0%
!!! TAATTTTTGTCTAAAATATA+AGG - chr1_1:52434119-52434138 Msa0027830:intron 10.0%
!!! AATTTTTGTCTAAAATATAA+GGG - chr1_1:52434120-52434139 Msa0027830:intron 10.0%
!!! AAAAAATTCTGAATTTTTTT+TGG + chr1_1:52434328-52434347 None:intergenic 10.0%
!!! TAATGATTGAAAATTTTATA+GGG - chr1_1:52434527-52434546 Msa0027830:intron 10.0%
!! ATATAATAGTTACTTATATT+TGG + chr1_1:52434631-52434650 None:intergenic 10.0%
!! CAAAATAAAATTTGATTAAA+AGG + chr1_1:52434683-52434702 None:intergenic 10.0%
!! ACATTAATTAAATAAGACAT+CGG + chr1_1:52432631-52432650 None:intergenic 15.0%
!!! TTAATCAATGTTTTAAAAAC+TGG - chr1_1:52432998-52433017 Msa0027830:intron 15.0%
!!! TATAGTTAAATTTGTTCAAT+CGG + chr1_1:52433167-52433186 None:intergenic 15.0%
!! TTCTAATAAATATTATTGTG+TGG - chr1_1:52433272-52433291 Msa0027830:intron 15.0%
!! TCTAATAAATATTATTGTGT+GGG - chr1_1:52433273-52433292 Msa0027830:intron 15.0%
!! AATATTATCAGAATTAATGT+CGG - chr1_1:52433549-52433568 Msa0027830:CDS 15.0%
!! ATTTACCAATTATAGAATTT+CGG - chr1_1:52433979-52433998 Msa0027830:intron 15.0%
!!! ATTTTTGTCTAAAATATAAG+GGG - chr1_1:52434121-52434140 Msa0027830:intron 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG + chr1_1:52434224-52434243 None:intergenic 15.0%
!!! AAATTTTCAATCATTACTTT+TGG + chr1_1:52434523-52434542 None:intergenic 15.0%
!!! GTAATGATTGAAAATTTTAT+AGG - chr1_1:52434526-52434545 Msa0027830:intron 15.0%
!! TATGTTATTGAATGTTTAAA+GGG + chr1_1:52434711-52434730 None:intergenic 15.0%
!! TTATGTTATTGAATGTTTAA+AGG + chr1_1:52434712-52434731 None:intergenic 15.0%
!! TTATTGTTTATAATTGAGAT+CGG - chr1_1:52434819-52434838 Msa0027830:intron 15.0%
!! AAAGTTAGATACTTTAGTAA+TGG - chr1_1:52432374-52432393 Msa0027830:intron 20.0%
!!! TACAATTAATATAGTCTTAG+TGG - chr1_1:52432577-52432596 Msa0027830:intron 20.0%
!!! GGTTTTAGAAAGAAAAAAAA+AGG + chr1_1:52432607-52432626 None:intergenic 20.0%
!!! TCTTCAAGTTATAGTTAAAT+TGG + chr1_1:52432819-52432838 None:intergenic 20.0%
!!! ATGTTAAATACCTTTAGAAT+AGG - chr1_1:52433447-52433466 Msa0027830:intron 20.0%
!! TTGTAAATCTTTAATGAGAT+TGG + chr1_1:52433944-52433963 None:intergenic 20.0%
!! GAAAAGTTGACATATTTATA+GGG + chr1_1:52434587-52434606 None:intergenic 20.0%
!!! GTGAAGATTGAAAATTTTAT+AGG + chr1_1:52434225-52434244 None:intergenic 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + chr1_1:52434255-52434274 None:intergenic 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr1_1:52434256-52434275 None:intergenic 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr1_1:52434587-52434606 Msa0027830:intron 20.0%
!!! AGAATCTTTCATTTTAGTTT+TGG - chr1_1:52434869-52434888 Msa0027830:CDS 20.0%
!! AATGTTATAGCCTAAAATAA+GGG + chr1_1:52435178-52435197 None:intergenic 20.0%
!! TAATGTTATAGCCTAAAATA+AGG + chr1_1:52435179-52435198 None:intergenic 20.0%
!! AAAAAACTATCAAATTTGTG+CGG + chr1_1:52435343-52435362 None:intergenic 20.0%
!!! CACAAATTTGATAGTTTTTT+TGG - chr1_1:52435343-52435362 Msa0027830:CDS 20.0%
! ATCAAATTCTTTCACTTCTT+TGG + chr1_1:52432021-52432040 None:intergenic 25.0%
!! GAATTTGATGAATCTAAAAC+TGG - chr1_1:52432032-52432051 Msa0027830:three_prime_UTR 25.0%
! AGAGATACTTAATGAGATTA+AGG - chr1_1:52432205-52432224 Msa0027830:CDS 25.0%
! TTAATTAAATAAGACATCGG+AGG + chr1_1:52432628-52432647 None:intergenic 25.0%
!!! GTTTTAGAAAGAAGAAAAGA+AGG + chr1_1:52432963-52432982 None:intergenic 25.0%
! TGATTAAAACAGACATAAGA+AGG + chr1_1:52432985-52433004 None:intergenic 25.0%
! GTTGAATTAGGTTTAAACTA+CGG - chr1_1:52433112-52433131 Msa0027830:intron 25.0%
!!! AAAATCGATGTTTTGAAAGT+CGG + chr1_1:52433211-52433230 None:intergenic 25.0%
! TACTTAGATTCAATGTTCTA+TGG + chr1_1:52433337-52433356 None:intergenic 25.0%
!!! TGGAACATATTCTAAAACTA+AGG - chr1_1:52433524-52433543 Msa0027830:CDS 25.0%
!!! GGAACATATTCTAAAACTAA+GGG - chr1_1:52433525-52433544 Msa0027830:CDS 25.0%
! ATAAAAAATTAGATTAGGGG+AGG - chr1_1:52433888-52433907 Msa0027830:intron 25.0%
! TAAATCTTTAATGAGATTGG+TGG + chr1_1:52433941-52433960 None:intergenic 25.0%
! TTAGTCCGAAATTCTATAAT+TGG + chr1_1:52433987-52434006 None:intergenic 25.0%
!! AGATATAAAGGAATCCATTT+TGG + chr1_1:52434059-52434078 None:intergenic 25.0%
!! TAAGGGGTTAAATATGTTTT+TGG - chr1_1:52434137-52434156 Msa0027830:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG + chr1_1:52434586-52434605 None:intergenic 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr1_1:52434586-52434605 Msa0027830:intron 25.0%
! CAAAAAATATAGACCTATAG+AGG - chr1_1:52435052-52435071 Msa0027830:CDS 25.0%
!!! CCACATTTTCTAAAACATAA+GGG + chr1_1:52435281-52435300 None:intergenic 25.0%
!!! TCCACATTTTCTAAAACATA+AGG + chr1_1:52435282-52435301 None:intergenic 25.0%
! TGATTCTAGACATTTTCTCT+TGG + chr1_1:52431950-52431969 None:intergenic 30.0%
AAAGAACAAATGTTTCCCTT+TGG - chr1_1:52431972-52431991 Msa0027830:three_prime_UTR 30.0%
TAGTTAACATCTTCACCAAA+GGG + chr1_1:52431990-52432009 None:intergenic 30.0%
ATAGTTAACATCTTCACCAA+AGG + chr1_1:52431991-52432010 None:intergenic 30.0%
TTTGGATGGATAAAGAATCT+TGG + chr1_1:52432095-52432114 None:intergenic 30.0%
TTCTTTCAAATGGTGAATCA+CGG - chr1_1:52432248-52432267 Msa0027830:CDS 30.0%
TGTTATGGATGACATGTTAA+AGG - chr1_1:52432283-52432302 Msa0027830:CDS 30.0%
ATCATGGAAGTCAAACATAA+TGG + chr1_1:52432438-52432457 None:intergenic 30.0%
! ATTATGTTTGACTTCCATGA+TGG - chr1_1:52432437-52432456 Msa0027830:intron 30.0%
CCTTATTCAATCGATTGAAT+CGG + chr1_1:52432676-52432695 None:intergenic 30.0%
CTGGTATACTATATTCTTAG+TGG - chr1_1:52432933-52432952 Msa0027830:intron 30.0%
CAAGTTCAATCGATTGAATA+AGG - chr1_1:52433030-52433049 Msa0027830:intron 30.0%
!!! GTTTTGATTACATTGTAGTC+TGG - chr1_1:52433079-52433098 Msa0027830:intron 30.0%
AATTAGGTTTAAACTACGGT+TGG - chr1_1:52433116-52433135 Msa0027830:intron 30.0%
ATTAGGTTTAAACTACGGTT+GGG - chr1_1:52433117-52433136 Msa0027830:intron 30.0%
ATAACATGAAGATCTCACTT+CGG - chr1_1:52433184-52433203 Msa0027830:intron 30.0%
AATTTGTGCAATTGTTAGAG+AGG + chr1_1:52433306-52433325 None:intergenic 30.0%
TCATTACTCTCCTATTCTAA+AGG + chr1_1:52433460-52433479 None:intergenic 30.0%
!! AATTAATGTCGGAAGCATTA+GGG - chr1_1:52433560-52433579 Msa0027830:CDS 30.0%
! TATCAACCCAATGATTTTGA+TGG + chr1_1:52433756-52433775 None:intergenic 30.0%
GTTGATATTAACCCAATTCA+TGG - chr1_1:52433769-52433788 Msa0027830:CDS 30.0%
TCTGAAGAGAAGAGATATAA+AGG + chr1_1:52434071-52434090 None:intergenic 30.0%
! AGTCGAAGGAAAATTTTAGA+GGG + chr1_1:52434195-52434214 None:intergenic 30.0%
! AAGTCGAAGGAAAATTTTAG+AGG + chr1_1:52434196-52434215 None:intergenic 30.0%
!!! TATATTTTTTGCTTGCGTTG+GGG + chr1_1:52435043-52435062 None:intergenic 30.0%
!!! CTATATTTTTTGCTTGCGTT+GGG + chr1_1:52435044-52435063 None:intergenic 30.0%
!!! TCTATATTTTTTGCTTGCGT+TGG + chr1_1:52435045-52435064 None:intergenic 30.0%
ATGAAAATCCACCAAAATAC+AGG - chr1_1:52435087-52435106 Msa0027830:CDS 30.0%
TGAAAATCCACCAAAATACA+GGG - chr1_1:52435088-52435107 Msa0027830:CDS 30.0%
! ATATCTGTTTCCCTGTATTT+TGG + chr1_1:52435101-52435120 None:intergenic 30.0%
CTGAATATCTTACTCACTTT+AGG - chr1_1:52435123-52435142 Msa0027830:CDS 30.0%
TTACTCACTTTAGGTCTAAA+GGG - chr1_1:52435132-52435151 Msa0027830:CDS 30.0%
ATAACATTAACATGCATGAG+TGG - chr1_1:52435190-52435209 Msa0027830:CDS 30.0%
!!! CCCTTATGTTTTAGAAAATG+TGG - chr1_1:52435278-52435297 Msa0027830:CDS 30.0%
!!! TTTTTTTGGATGCATACATC+TGG - chr1_1:52435357-52435376 Msa0027830:exon 30.0%
TTTGCTTCAAAGTTGAAACG+TGG + chr1_1:52431904-52431923 None:intergenic 35.0%
CTCAGATAGTGACTGAAAAA+GGG + chr1_1:52431927-52431946 None:intergenic 35.0%
! GAATCTAAAACTGGAGTGAA+AGG - chr1_1:52432041-52432060 Msa0027830:three_prime_UTR 35.0%
GATAAAGAATCTTGGAAGCT+TGG + chr1_1:52432087-52432106 None:intergenic 35.0%
TATCCTGTGAAATCTATCAC+AGG + chr1_1:52432167-52432186 None:intergenic 35.0%
! TCACAGGATATGAAAAGTGT+AGG - chr1_1:52432177-52432196 Msa0027830:CDS 35.0%
!! TTAAGGAAGCATCAGAAACA+TGG - chr1_1:52432222-52432241 Msa0027830:CDS 35.0%
!! TAAGGAAGCATCAGAAACAT+GGG - chr1_1:52432223-52432242 Msa0027830:CDS 35.0%
AACATGGGGTTTCTTTCAAA+TGG - chr1_1:52432238-52432257 Msa0027830:CDS 35.0%
ATGTCATCCATAACACAAAC+TGG + chr1_1:52432278-52432297 None:intergenic 35.0%
!!! CATTTTTTCTTCACCTCACT+AGG + chr1_1:52432332-52432351 None:intergenic 35.0%
CTAGTGAGGTGAAGAAAAAA+TGG - chr1_1:52432330-52432349 Msa0027830:CDS 35.0%
TTGTTGCTAAAGCAGCTAAT+TGG - chr1_1:52432405-52432424 Msa0027830:intron 35.0%
ATTGATGTTGCGTAGAATCA+CGG - chr1_1:52432549-52432568 Msa0027830:intron 35.0%
CCGATTCAATCGATTGAATA+AGG - chr1_1:52432673-52432692 Msa0027830:intron 35.0%
TAAGGAATCGTCCAATTCAT+CGG - chr1_1:52432691-52432710 Msa0027830:intron 35.0%
!!! GTTTTGATTACATTGCAGTC+TGG - chr1_1:52432722-52432741 Msa0027830:intron 35.0%
TGGTTGAACCAGATTGAATT+AGG - chr1_1:52432742-52432761 Msa0027830:intron 35.0%
GCTTCAAACCTAATTCAATC+TGG + chr1_1:52432753-52432772 None:intergenic 35.0%
! ATTGAATTAGGTTTGAAGCG+CGG - chr1_1:52432754-52432773 Msa0027830:intron 35.0%
GAATCACAGTCAAATACAAC+TGG - chr1_1:52432914-52432933 Msa0027830:intron 35.0%
! TAAGGAATCGTCCATTTTGT+CGG - chr1_1:52433048-52433067 Msa0027830:intron 35.0%
GTTTAAACCTAATTCAACCC+TGG + chr1_1:52433110-52433129 None:intergenic 35.0%
CCATTCGATCTAAGTACAAA+TGG + chr1_1:52433375-52433394 None:intergenic 35.0%
CCATTTGTACTTAGATCGAA+TGG - chr1_1:52433372-52433391 Msa0027830:intron 35.0%
! ACTTAGATCGAATGGTTCTA+TGG - chr1_1:52433380-52433399 Msa0027830:intron 35.0%
! TTGTTTGTCTTTTTCCTGCA+GGG - chr1_1:52433483-52433502 Msa0027830:intron 35.0%
GGAAGCAGTGATAAAATTCA+TGG - chr1_1:52433504-52433523 Msa0027830:CDS 35.0%
!! GAATTAATGTCGGAAGCATT+AGG - chr1_1:52433559-52433578 Msa0027830:CDS 35.0%
ATTCTCCTCCAAGATACTAT+TGG - chr1_1:52433715-52433734 Msa0027830:CDS 35.0%
AGGTTCTCCATCAAAATCAT+TGG - chr1_1:52433746-52433765 Msa0027830:CDS 35.0%
GGTTCTCCATCAAAATCATT+GGG - chr1_1:52433747-52433766 Msa0027830:CDS 35.0%
CTCTGACTTTACATGAGATA+GGG + chr1_1:52433914-52433933 None:intergenic 35.0%
TCTCTGACTTTACATGAGAT+AGG + chr1_1:52433915-52433934 None:intergenic 35.0%
TTATAGGGACTAAAAGTCGA+AGG + chr1_1:52434542-52434561 None:intergenic 35.0%
TTATAGGGACTAAAAGTCGA+AGG - chr1_1:52434542-52434561 Msa0027830:intron 35.0%
TATAGGGACTAAAAGTCGAA+GGG - chr1_1:52434543-52434562 Msa0027830:intron 35.0%
! AAGTCGAAGGGAAATTTTAG+AGG - chr1_1:52434555-52434574 Msa0027830:intron 35.0%
! AGTCGAAGGGAAATTTTAGA+GGG - chr1_1:52434556-52434575 Msa0027830:intron 35.0%
AGCTACACAAGAAAATGACA+TGG + chr1_1:52434933-52434952 None:intergenic 35.0%
TCAGATATGAACTCCTCTAT+AGG + chr1_1:52435068-52435087 None:intergenic 35.0%
CTTACTCACTTTAGGTCTAA+AGG - chr1_1:52435131-52435150 Msa0027830:CDS 35.0%
!!! GTAAAGCTCTCCCTTATTTT+AGG - chr1_1:52435165-52435184 Msa0027830:CDS 35.0%
GCTCAGATAGTGACTGAAAA+AGG + chr1_1:52431928-52431947 None:intergenic 40.0%
! TTGGAACAGACTCTTTTGGA+TGG + chr1_1:52432109-52432128 None:intergenic 40.0%
!!! TGCTTTGGAACAGACTCTTT+TGG + chr1_1:52432113-52432132 None:intergenic 40.0%
GAAGAAGTTGCATCATGCTT+TGG + chr1_1:52432128-52432147 None:intergenic 40.0%
GTTCCTGTGATAGATTTCAC+AGG - chr1_1:52432161-52432180 Msa0027830:CDS 40.0%
! CAGGATATGAAAAGTGTAGG+AGG - chr1_1:52432180-52432199 Msa0027830:CDS 40.0%
!! AAGGAAGCATCAGAAACATG+GGG - chr1_1:52432224-52432243 Msa0027830:CDS 40.0%
TTGCTAAAGCAGCTAATTGG+AGG - chr1_1:52432408-52432427 Msa0027830:intron 40.0%
TGCTAAAGCAGCTAATTGGA+GGG - chr1_1:52432409-52432428 Msa0027830:intron 40.0%
AACCATACCTACCGATGAAT+TGG + chr1_1:52432705-52432724 None:intergenic 40.0%
TGGATATACCAGTTCAACCA+TGG - chr1_1:52432778-52432797 Msa0027830:intron 40.0%
AGTTCAAACCATGGTTGAAC+TGG + chr1_1:52432789-52432808 None:intergenic 40.0%
GGTTCAATCAGTTCAAACCA+TGG + chr1_1:52432798-52432817 None:intergenic 40.0%
AACCAAACCTACCGACAAAA+TGG + chr1_1:52433062-52433081 None:intergenic 40.0%
ATTGTAGTCTGGTTGAACCA+GGG - chr1_1:52433090-52433109 Msa0027830:intron 40.0%
! TTGTTCAATCGGTTCAACCA+TGG + chr1_1:52433156-52433175 None:intergenic 40.0%
! GTTGTTTGTCTTTTTCCTGC+AGG - chr1_1:52433482-52433501 Msa0027830:intron 40.0%
!! GGAAGCATTAGGGCTAAAAA+GGG - chr1_1:52433570-52433589 Msa0027830:CDS 40.0%
! TGATGGATCTGAATGCTTTG+TGG + chr1_1:52433686-52433705 None:intergenic 40.0%
ATCTTGGAGGAGAATTGTGA+GGG + chr1_1:52433710-52433729 None:intergenic 40.0%
TATCTTGGAGGAGAATTGTG+AGG + chr1_1:52433711-52433730 None:intergenic 40.0%
!! GATTTTGATGGAGAACCTGT+AGG + chr1_1:52433744-52433763 None:intergenic 40.0%
CCACTAATGCACCATGAATT+GGG + chr1_1:52433783-52433802 None:intergenic 40.0%
AAACATAGGTGACTTCATGC+AGG - chr1_1:52433804-52433823 Msa0027830:intron 40.0%
CGGACTAAAACTCAAATCAC+AGG - chr1_1:52433999-52434018 Msa0027830:intron 40.0%
ACCATCTCTGCTAACCAAAA+TGG - chr1_1:52434042-52434061 Msa0027830:intron 40.0%
!!! TCCATTTTGGTTAGCAGAGA+TGG + chr1_1:52434046-52434065 None:intergenic 40.0%
!! TCTGTTTCCCTGTATTTTGG+TGG + chr1_1:52435098-52435117 None:intergenic 40.0%
TTTAGGTCTAAAGGGCTTGA+TGG - chr1_1:52435140-52435159 Msa0027830:CDS 40.0%
ACTATCAAATTTGTGCGGTC+TGG + chr1_1:52435338-52435357 None:intergenic 40.0%
TGGATGCATACATCTGGATA+AGG - chr1_1:52435363-52435382 Msa0027830:exon 40.0%
GCTTCAAAGTTGAAACGTGG+TGG + chr1_1:52431901-52431920 None:intergenic 45.0%
GTGAAAGGACTACTAGACTC+TGG - chr1_1:52432056-52432075 Msa0027830:three_prime_UTR 45.0%
CGGTGTTCCAGTTTGTGTTA+TGG - chr1_1:52432268-52432287 Msa0027830:CDS 45.0%
GTTTCATGAGCAACCTAGTG+AGG - chr1_1:52432316-52432335 Msa0027830:CDS 45.0%
GGATATGCTTGTGGATCAAG+AGG + chr1_1:52432464-52432483 None:intergenic 45.0%
GAATCGTCCAATTCATCGGT+AGG - chr1_1:52432695-52432714 Msa0027830:intron 45.0%
GTCCAATTCATCGGTAGGTA+TGG - chr1_1:52432700-52432719 Msa0027830:intron 45.0%
! AATTAGGTTTGAAGCGCGGT+TGG - chr1_1:52432758-52432777 Msa0027830:intron 45.0%
! GAATCGTCCATTTTGTCGGT+AGG - chr1_1:52433052-52433071 Msa0027830:intron 45.0%
! GTCCATTTTGTCGGTAGGTT+TGG - chr1_1:52433057-52433076 Msa0027830:intron 45.0%
CATTGTAGTCTGGTTGAACC+AGG - chr1_1:52433089-52433108 Msa0027830:intron 45.0%
GGTTGAACCAGGGTTGAATT+AGG - chr1_1:52433100-52433119 Msa0027830:intron 45.0%
! TTTTATCACTGCTTCCCTGC+AGG + chr1_1:52433500-52433519 None:intergenic 45.0%
!! CGGAAGCATTAGGGCTAAAA+AGG - chr1_1:52433569-52433588 Msa0027830:CDS 45.0%
!! CCAAATGTCAGTTCTGGTTC+AGG + chr1_1:52433661-52433680 None:intergenic 45.0%
CCTGAACCAGAACTGACATT+TGG - chr1_1:52433658-52433677 Msa0027830:CDS 45.0%
AGGAGAATTGTGAGGGATGA+TGG + chr1_1:52433703-52433722 None:intergenic 45.0%
CTCCTCCAAGATACTATTGG+TGG - chr1_1:52433718-52433737 Msa0027830:CDS 45.0%
GTAGGCCACCAATAGTATCT+TGG + chr1_1:52433726-52433745 None:intergenic 45.0%
! AGATACTATTGGTGGCCTAC+AGG - chr1_1:52433726-52433745 Msa0027830:CDS 45.0%
CCCAATTCATGGTGCATTAG+TGG - chr1_1:52433780-52433799 Msa0027830:CDS 45.0%
GCCACTAATGCACCATGAAT+TGG + chr1_1:52433784-52433803 None:intergenic 45.0%
GGTGCATTAGTGGCAAACAT+AGG - chr1_1:52433790-52433809 Msa0027830:CDS 45.0%
! GTTGAGCATAGAGTACTTGC+TGG - chr1_1:52434978-52434997 Msa0027830:CDS 45.0%
! AGAGTACTTGCTGGAAGTGT+TGG - chr1_1:52434987-52435006 Msa0027830:CDS 45.0%
!! GAGTACTTGCTGGAAGTGTT+GGG - chr1_1:52434988-52435007 Msa0027830:CDS 45.0%
!! TATAAATAAAAAATTAGATT+AGG - chr1_1:52433883-52433902 Msa0027830:intron 5.0%
!! ATAAATAAAAAATTAGATTA+GGG - chr1_1:52433884-52433903 Msa0027830:intron 5.0%
!!! AAAAAATTCTAATTTTTTTA+AGG - chr1_1:52434421-52434440 Msa0027830:intron 5.0%
!! ACAAAAATTAAATTAAAAAT+AGG - chr1_1:52434495-52434514 Msa0027830:intron 5.0%
!! CAAAAATTAAATTAAAAATA+GGG - chr1_1:52434496-52434515 Msa0027830:intron 5.0%
GTGGATCAAGAGGACCATCA+TGG + chr1_1:52432454-52432473 None:intergenic 50.0%
CACACTAGGGGATATGCTTG+TGG + chr1_1:52432473-52432492 None:intergenic 50.0%
AAGCATATCCCCTAGTGTGC+AGG - chr1_1:52432474-52432493 Msa0027830:intron 50.0%
ATATCCCCTAGTGTGCAGGT+AGG - chr1_1:52432478-52432497 Msa0027830:intron 50.0%
TGCTTCCTACCTGCACACTA+GGG + chr1_1:52432486-52432505 None:intergenic 50.0%
ATGCTTCCTACCTGCACACT+AGG + chr1_1:52432487-52432506 None:intergenic 50.0%
CATCAATGATCGCGACTCGA+AGG + chr1_1:52432536-52432555 None:intergenic 50.0%
TGGGTATACCAGCTCAACCA+TGG - chr1_1:52433136-52433155 Msa0027830:intron 50.0%
!! GTTCTGGTTCAGGACACGTA+GGG + chr1_1:52433651-52433670 None:intergenic 50.0%
!! AGTTCTGGTTCAGGACACGT+AGG + chr1_1:52433652-52433671 None:intergenic 50.0%
GTGGCACCAAATGTCAGTTC+TGG + chr1_1:52433667-52433686 None:intergenic 50.0%
GGCCACCAATAGTATCTTGG+AGG + chr1_1:52433723-52433742 None:intergenic 50.0%
GCTTCCTACCTGCACACTAG+GGG + chr1_1:52432485-52432504 None:intergenic 55.0%
CGGTTCAACCATGGTTGAGC+TGG + chr1_1:52433147-52433166 None:intergenic 55.0%
!! TTGCTGGAAGTGTTGGGCCA+AGG - chr1_1:52434994-52435013 Msa0027830:CDS 55.0%
!! TGCTGGAAGTGTTGGGCCAA+GGG - chr1_1:52434995-52435014 Msa0027830:CDS 55.0%
TGGCAAGCAACTGATGCCCT+TGG + chr1_1:52435014-52435033 None:intergenic 55.0%
TGCTTGCGTTGGGGTACACG+TGG + chr1_1:52435034-52435053 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 52431882 52435439 52431882 ID=Msa0027830;Name=Msa0027830
chr1_1 mRNA 52431882 52435439 52431882 ID=Msa0027830-mRNA-1;Parent=Msa0027830;Name=Msa0027830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=75|1|1|1|1|1|3|246|367
chr1_1 exon 52431882 52432370 52431882 ID=Msa0027830-mRNA-1:exon:15394;Parent=Msa0027830-mRNA-1
chr1_1 exon 52433496 52433817 52433496 ID=Msa0027830-mRNA-1:exon:15393;Parent=Msa0027830-mRNA-1
chr1_1 exon 52434826 52435439 52434826 ID=Msa0027830-mRNA-1:exon:15392;Parent=Msa0027830-mRNA-1
chr1_1 five_prime_UTR 52435365 52435439 52435365 ID=Msa0027830-mRNA-1:five_prime_utr;Parent=Msa0027830-mRNA-1
chr1_1 CDS 52434826 52435364 52434826 ID=Msa0027830-mRNA-1:cds;Parent=Msa0027830-mRNA-1
chr1_1 CDS 52433496 52433817 52433496 ID=Msa0027830-mRNA-1:cds;Parent=Msa0027830-mRNA-1
chr1_1 CDS 52432128 52432370 52432128 ID=Msa0027830-mRNA-1:cds;Parent=Msa0027830-mRNA-1
chr1_1 three_prime_UTR 52431882 52432127 52431882 ID=Msa0027830-mRNA-1:three_prime_utr;Parent=Msa0027830-mRNA-1
Gene Sequence

>Msa0027830

ATGTCTAGAATCATGAAAGAACAAATGTTTCCCTTTGGTGAAGATGTTAACTATGATAGAGCCAAAGAAGTGAAAGAATTTGATGAATCTAAAACTGGAGTGAAAGGACTACTAGACTCTGGAATTACCAAGCTTCCAAGATTCTTTATCCATCCAAAAGAGTCTGTTCCAAAGCATGATGCAACTTCTTCATGCTTATTTCATGTTCCTGTGATAGATTTCACAGGATATGAAAAGTGTAGGAGGTTAGAGATACTTAATGAGATTAAGGAAGCATCAGAAACATGGGGTTTCTTTCAAATGGTGAATCACGGTGTTCCAGTTTGTGTTATGGATGACATGTTAAAGGCTATAAAAGAGTTTCATGAGCAACCTAGTGAGGTGAAGAAAAAATGGTATTCACGTGATCATAAGCTGAAAGTTAGATACTTTAGTAATGGTGATCTTCTTGTTGCTAAAGCAGCTAATTGGAGGGATACCATTATGTTTGACTTCCATGATGGTCCTCTTGATCCACAAGCATATCCCCTAGTGTGCAGGGAAGCAGTGATAAAATTCATGGAACATATTCTAAAACTAAGGGAAATATTATCAGAATTAATGTCGGAAGCATTAGGGCTAAAAAGGGACTATCTTGCAAATATAGAGTGCATGAAAAGTGAAACAGTAGTGTGTCACTATTACCCTACGTGTCCTGAACCAGAACTGACATTTGGTGCCACAAAGCATTCAGATCCATCATCCCTCACAATTCTCCTCCAAGATACTATTGGTGGCCTACAGGTTCTCCATCAAAATCATTGGGTTGATATTAACCCAATTCATGGTGCATTAGTGGCAAACATAGGTGACTTCATGCAGCTTATCAGCAATGACAAGTTCAAAAGTGTTGAGCATAGAGTACTTGCTGGAAGTGTTGGGCCAAGGGCATCAGTTGCTTGCCACGTGTACCCCAACGCAAGCAAAAAATATAGACCTATAGAGGAGTTCATATCTGATGAAAATCCACCAAAATACAGGGAAACAGATATTACTGAATATCTTACTCACTTTAGGTCTAAAGGGCTTGATGGATGTAAAGCTCTCCCTTATTTTAGGCTATAA
Protein sequence

>Msa0027830

MSRIMKEQMFPFGEDVNYDRAKEVKEFDESKTGVKGLLDSGITKLPRFFIHPKESVPKHDATSSCLFHVPVIDFTGYEKCRRLEILNEIKEASETWGFFQMVNHGVPVCVMDDMLKAIKEFHEQPSEVKKKWYSRDHKLKVRYFSNGDLLVAKAANWRDTIMFDFHDGPLDPQAYPLVCREAVIKFMEHILKLREILSELMSEALGLKRDYLANIECMKSETVVCHYYPTCPEPELTFGATKHSDPSSLTILLQDTIGGLQVLHQNHWVDINPIHGALVANIGDFMQLISNDKFKSVEHRVLAGSVGPRASVACHVYPNASKKYRPIEEFISDENPPKYRETDITEYLTHFRSKGLDGCKALPYFRL*