AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0207250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0207250 MtrunA17_Chr6g0451601 97.931 145 2 1 1 145 1 144 6.05e-105 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0207250 AT2G04700.3 74.658 146 36 1 1 145 1 146 2.63e-78 228
Msa0207250 AT2G04700.1 74.658 146 36 1 1 145 1 146 2.63e-78 228
Msa0207250 AT2G04700.2 63.529 85 29 1 63 145 6 90 1.78e-33 113

Find 57 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGGCTGCGCAAGGATTT+TGG 0.152975 2_1:+37941712 Msa0207250:CDS
TATGGGTTAGGCCATTTATA+AGG 0.223780 2_1:-37942799 None:intergenic
GTGCACCCAATGAATCTTTA+TGG 0.264541 2_1:-37941323 None:intergenic
TCATCTGTGCCCCTTATAAA+TGG 0.277222 2_1:+37942788 Msa0207250:three_prime_UTR
TTTCATATCTTTATCGATAT+CGG 0.284959 2_1:+37942884 Msa0207250:three_prime_UTR
AAAAGAATGTTCCTGATTTA+CGG 0.288914 2_1:-37939703 None:intergenic
GATCTGTGACAAAGTAAGTA+TGG 0.291489 2_1:-37942817 None:intergenic
TAACACAAAATTGTATCTTT+TGG 0.294213 2_1:+37937636 Msa0207250:five_prime_UTR
ACGGAGAGGGGAAGGGGCGG+AGG 0.323995 2_1:-37937770 None:intergenic
AGGGGAAGGGGCGGAGGAAA+CGG 0.327151 2_1:-37937764 None:intergenic
TCTGCTATGAAATGTGAAAA+TGG 0.355164 2_1:-37937693 None:intergenic
GTGCACCACTCTGCCCTTGC+CGG 0.356354 2_1:+37941340 Msa0207250:CDS
GCGACGACGGAGAGGGGAAG+GGG 0.358018 2_1:-37937776 None:intergenic
GGCTGACCATAAAGATTCAT+TGG 0.360393 2_1:+37941317 Msa0207250:CDS
ATGGGTTAGGCCATTTATAA+GGG 0.373188 2_1:-37942798 None:intergenic
TCGCCGGCAAAATCGTTATC+AGG 0.384591 2_1:-37942480 None:intergenic
AGTGGAACCTTCTGATAAAT+CGG 0.392631 2_1:+37939646 Msa0207250:intron
ACGACGGAGAGGGGAAGGGG+CGG 0.395791 2_1:-37937773 None:intergenic
GAGCAATATGCCCGTAAATC+AGG 0.400997 2_1:+37939692 Msa0207250:CDS
AAAGAATGTTCCTGATTTAC+GGG 0.415753 2_1:-37939702 None:intergenic
AACAGCAGTTACTCCTTTGT+CGG 0.421470 2_1:-37939729 None:intergenic
CGGCGACGACGGAGAGGGGA+AGG 0.427256 2_1:-37937778 None:intergenic
TGCCTTGCAGACTATCACCT+TGG 0.428260 2_1:+37942615 Msa0207250:intron
TTACATTGAGCTCGAACGAC+GGG 0.430081 2_1:-37937811 None:intergenic
GAAGCTTGAGAGGTCATTGC+TGG 0.451516 2_1:-37937727 None:intergenic
TGACAAAGTAAGTATGGGTT+AGG 0.474066 2_1:-37942811 None:intergenic
ATAAATCGGTTGAAATTATG+AGG 0.478140 2_1:+37939660 Msa0207250:CDS
GCTGACCATAAAGATTCATT+GGG 0.479818 2_1:+37941318 Msa0207250:CDS
CTCTCTCTCATGGGAACACA+CGG 0.481015 2_1:-37941741 None:intergenic
AAATGAAAGTTATGAAATGA+AGG 0.495288 2_1:-37942841 None:intergenic
ATGTGCCTACCTCTCTCTCA+TGG 0.500306 2_1:-37941751 None:intergenic
GGCGACGACGGAGAGGGGAA+GGG 0.503233 2_1:-37937777 None:intergenic
AGTAACTGCTGTTGTTATCA+AGG 0.507865 2_1:+37939739 Msa0207250:CDS
TGATTCTTTAATTTCATCCA+AGG 0.519163 2_1:-37942632 None:intergenic
ATTTCAACCGATTTATCAGA+AGG 0.525234 2_1:-37939653 None:intergenic
CGGAATTACCTGTTCATCGC+CGG 0.528238 2_1:-37942496 None:intergenic
TTTACATTGAGCTCGAACGA+CGG 0.560983 2_1:-37937812 None:intergenic
AGCGAAGGTTGAAGCTTGAG+AGG 0.562231 2_1:-37937737 None:intergenic
CAAGAAGTATTTACCGGCAA+GGG 0.563318 2_1:-37941353 None:intergenic
ATCTGTGACAAAGTAAGTAT+GGG 0.563741 2_1:-37942816 None:intergenic
TGCTGCGGCGACGACGGAGA+GGG 0.565512 2_1:-37937783 None:intergenic
GAACGACGGGGAAGGTGCTG+CGG 0.574422 2_1:-37937798 None:intergenic
TGTGCCTACCTCTCTCTCAT+GGG 0.575835 2_1:-37941750 None:intergenic
GGAAGGTGCTGCGGCGACGA+CGG 0.586461 2_1:-37937789 None:intergenic
GCTGCGGCGACGACGGAGAG+GGG 0.589010 2_1:-37937782 None:intergenic
ACAAGAAGTATTTACCGGCA+AGG 0.590984 2_1:-37941354 None:intergenic
AAAGCTGCTGAGGCTGCGCA+AGG 0.592198 2_1:+37941705 Msa0207250:CDS
CGTGTGTTCCCATGAGAGAG+AGG 0.615907 2_1:+37941742 Msa0207250:CDS
TTATGACGATAAAGCTGCTG+AGG 0.616351 2_1:+37941695 Msa0207250:CDS
TTGAGCTCGAACGACGGGGA+AGG 0.617813 2_1:-37937806 None:intergenic
GTGCTGCGGCGACGACGGAG+AGG 0.621027 2_1:-37937784 None:intergenic
TGGGTTAGGCCATTTATAAG+GGG 0.622811 2_1:-37942797 None:intergenic
ATGTGAAAATGGTGTTTCTG+TGG 0.628860 2_1:-37937682 None:intergenic
GGAGGAAACGGAGAGAGCGA+AGG 0.629867 2_1:-37937752 None:intergenic
TACATTGAGCTCGAACGACG+GGG 0.648508 2_1:-37937810 None:intergenic
TCTCTCTCATGGGAACACAC+GGG 0.712722 2_1:-37941740 None:intergenic
ATTTACCGGCAAGGGCAGAG+TGG 0.719195 2_1:-37941345 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAAAAAAGTTAAAAATT+TGG - chr2_1:37937845-37937864 None:intergenic 10.0%
!!! TTTTTTAAGAAAAATTGTTT+TGG + chr2_1:37938819-37938838 Msa0207250:intron 10.0%
!!! ATTTTGAAAAAGTTATATTT+CGG - chr2_1:37939162-37939181 None:intergenic 10.0%
!!! TTTAAATTTTACTATGTTAT+AGG - chr2_1:37942076-37942095 None:intergenic 10.0%
!!! TTTGATTTTGATTTTTTTGA+TGG + chr2_1:37937883-37937902 Msa0207250:intron 15.0%
!! TGATATTAGATATATGAAAT+TGG + chr2_1:37938884-37938903 Msa0207250:intron 15.0%
!! ATGAAACTACAATTTATATT+TGG - chr2_1:37939809-37939828 None:intergenic 15.0%
!!! TTTTGTTTCATTTTCATAAA+CGG + chr2_1:37939943-37939962 Msa0207250:intron 15.0%
!!! TCTTTTTTTTTTTTTTTGTG+TGG + chr2_1:37939984-37940003 Msa0207250:intron 15.0%
!!! CTTTTTTTTTTTTTTTGTGT+GGG + chr2_1:37939985-37940004 Msa0207250:intron 15.0%
!! TTTGAAAATGTATTTATTAG+TGG + chr2_1:37940402-37940421 Msa0207250:intron 15.0%
!!! GATATTTTGTTTAAAGATAT+TGG + chr2_1:37942134-37942153 Msa0207250:intron 15.0%
!!! ATTTCATAACTTTCATTTTT+TGG + chr2_1:37942846-37942865 Msa0207250:three_prime_UTR 15.0%
!!! AGATACAATTTTGTGTTATA+TGG - chr2_1:37937634-37937653 None:intergenic 20.0%
!!! TAACACAAAATTGTATCTTT+TGG + chr2_1:37937636-37937655 Msa0207250:five_prime_UTR 20.0%
!!! TAACATGAAGTTAAGATTTT+TGG + chr2_1:37938485-37938504 Msa0207250:intron 20.0%
!!! CAAATTTGTATTTAACTTGA+TGG - chr2_1:37939288-37939307 None:intergenic 20.0%
!!! ATGACATGAATTTTTAAGTA+CGG + chr2_1:37939328-37939347 Msa0207250:intron 20.0%
!! TGAACTTTCTAAATATATAC+CGG + chr2_1:37939403-37939422 Msa0207250:intron 20.0%
!!! TTTTTAGGATTTTGTAAGTA+GGG + chr2_1:37940266-37940285 Msa0207250:intron 20.0%
!!! TCGAACCTAATTTAAATTTT+TGG + chr2_1:37940608-37940627 Msa0207250:intron 20.0%
!! CCATTCCAAAAATTTAAATT+AGG - chr2_1:37940616-37940635 None:intergenic 20.0%
!!! CCTAATTTAAATTTTTGGAA+TGG + chr2_1:37940613-37940632 Msa0207250:intron 20.0%
!!! TAAATTTTTGGAATGGATAA+TGG + chr2_1:37940620-37940639 Msa0207250:intron 20.0%
!! TAGAACACTATACTAATTTA+TGG + chr2_1:37940694-37940713 Msa0207250:intron 20.0%
!! AGAACACTATACTAATTTAT+GGG + chr2_1:37940695-37940714 Msa0207250:intron 20.0%
!! ATCATAACAAAATTTACACA+GGG - chr2_1:37940959-37940978 None:intergenic 20.0%
!! AAAAACAAATATGGAAATGA+AGG + chr2_1:37941090-37941109 Msa0207250:intron 20.0%
!!! TAAGCAAAACATAACTTTTT+AGG + chr2_1:37941815-37941834 Msa0207250:intron 20.0%
!! CATTGAATAACTAATGTATT+TGG + chr2_1:37941840-37941859 Msa0207250:intron 20.0%
!! CATGGAATAATTAATGTATT+TGG - chr2_1:37941879-37941898 None:intergenic 20.0%
!!! TTTTTGCTTATAAATATGAC+CGG + chr2_1:37941914-37941933 Msa0207250:intron 20.0%
!!! ACAAATAACATATTTAGAAC+TGG - chr2_1:37942298-37942317 None:intergenic 20.0%
!!! ATATGTTATTTGTCAAGAAA+TGG + chr2_1:37942305-37942324 Msa0207250:intron 20.0%
!! AGTTAAGAAAACAATATTCT+GGG - chr2_1:37942408-37942427 None:intergenic 20.0%
!!! TATTTTGATAAACAGAATCA+CGG - chr2_1:37942519-37942538 None:intergenic 20.0%
!!! TAATAATCTGTTTGTTTTGT+TGG - chr2_1:37942560-37942579 None:intergenic 20.0%
!! AAATGAAAGTTATGAAATGA+AGG - chr2_1:37942844-37942863 None:intergenic 20.0%
!! TTTCATATCTTTATCGATAT+CGG + chr2_1:37942884-37942903 Msa0207250:three_prime_UTR 20.0%
!! TAGTAAGTGTTGTTAATGAT+TGG + chr2_1:37937969-37937988 Msa0207250:intron 25.0%
!! TCAAGTAGAATCAATTTTGA+AGG + chr2_1:37938249-37938268 Msa0207250:intron 25.0%
!! TACACTTATAGGATCAATTT+TGG + chr2_1:37938319-37938338 Msa0207250:intron 25.0%
!!! AGTATATGTTTTGATATGTC+TGG + chr2_1:37938421-37938440 Msa0207250:intron 25.0%
! AAAGTGAATTGAATGTAAAG+TGG - chr2_1:37938584-37938603 None:intergenic 25.0%
!! TGTCAAATTTGAAAGCTTTT+TGG + chr2_1:37938702-37938721 Msa0207250:intron 25.0%
!! GTCAAATTTGAAAGCTTTTT+GGG + chr2_1:37938703-37938722 Msa0207250:intron 25.0%
! TCTAATATCAGTCATAATAC+TGG - chr2_1:37938874-37938893 None:intergenic 25.0%
! TGTTCTCATAAAATTGTTGA+TGG + chr2_1:37938951-37938970 Msa0207250:intron 25.0%
!!! GGAGTTTAAAAGTACTTTTT+TGG + chr2_1:37939055-37939074 Msa0207250:intron 25.0%
! GTTCAACATATATAACATTG+CGG + chr2_1:37939492-37939511 Msa0207250:intron 25.0%
! TTCAACATATATAACATTGC+GGG + chr2_1:37939493-37939512 Msa0207250:intron 25.0%
! TTTCTATAGAAATAATGTGC+TGG + chr2_1:37939616-37939635 Msa0207250:intron 25.0%
! ATAAATCGGTTGAAATTATG+AGG + chr2_1:37939660-37939679 Msa0207250:CDS 25.0%
! AAAAGAATGTTCCTGATTTA+CGG - chr2_1:37939706-37939725 None:intergenic 25.0%
! ATTGAATTCAAAGTTGAGAA+AGG - chr2_1:37940151-37940170 None:intergenic 25.0%
!!! TTGTTTTTTGAGCTCTTTAT+TGG + chr2_1:37940199-37940218 Msa0207250:intron 25.0%
!!! CTTTATTGGTTTCAAATGTT+AGG + chr2_1:37940213-37940232 Msa0207250:intron 25.0%
!!! GTTTTTAGGATTTTGTAAGT+AGG + chr2_1:37940265-37940284 Msa0207250:intron 25.0%
! TTCAAACCATATCTGATTAA+AGG - chr2_1:37940388-37940407 None:intergenic 25.0%
! GAAAATGTATTTATTAGTGG+TGG + chr2_1:37940405-37940424 Msa0207250:intron 25.0%
! AATTCGTTGCATTTATACTT+CGG - chr2_1:37940494-37940513 None:intergenic 25.0%
!!! AATCTTCCTAAAAGTACTTT+GGG - chr2_1:37940764-37940783 None:intergenic 25.0%
!!! AAATCTTCCTAAAAGTACTT+TGG - chr2_1:37940765-37940784 None:intergenic 25.0%
!! AACGTTTCTGTTTTATATAC+AGG + chr2_1:37940796-37940815 Msa0207250:intron 25.0%
! ATCAAAACAAAATTCACACA+GGG - chr2_1:37940906-37940925 None:intergenic 25.0%
! GATCATAACAAAATTTACAC+AGG - chr2_1:37940960-37940979 None:intergenic 25.0%
!! TATTTTACGTTAAGAAACAG+AGG - chr2_1:37940982-37941001 None:intergenic 25.0%
!! GAAAATTTTCCTATACATCT+TGG + chr2_1:37941061-37941080 Msa0207250:intron 25.0%
!! AAGTTTGAAAATGAGTTTTC+CGG + chr2_1:37941162-37941181 Msa0207250:intron 25.0%
! CTGATAACAGATATTTACTT+TGG + chr2_1:37941247-37941266 Msa0207250:intron 25.0%
!!! TACTGATATTGTTTCTACTT+TGG + chr2_1:37941284-37941303 Msa0207250:intron 25.0%
!!! GTAAAACAAGAAGTATTTAC+CGG - chr2_1:37941362-37941381 None:intergenic 25.0%
! TATTTAATAACACTGCAACA+AGG - chr2_1:37941384-37941403 None:intergenic 25.0%
!! TAAGCAAAAAACAACTTTTG+AGG - chr2_1:37941904-37941923 None:intergenic 25.0%
! TTAAACAAACTGATAGTTTC+TGG + chr2_1:37942091-37942110 Msa0207250:intron 25.0%
! TAAACAAACTGATAGTTTCT+GGG + chr2_1:37942092-37942111 Msa0207250:intron 25.0%
! GTTATTACAAAATACGATCA+TGG - chr2_1:37942231-37942250 None:intergenic 25.0%
! TATAAACTAAGAAAGTCACT+CGG - chr2_1:37942253-37942272 None:intergenic 25.0%
! GACTTTCTTAGTTTATATCT+TGG + chr2_1:37942256-37942275 Msa0207250:intron 25.0%
! TTAAGAAAACAATATTCTGG+GGG - chr2_1:37942406-37942425 None:intergenic 25.0%
! GTTAAGAAAACAATATTCTG+GGG - chr2_1:37942407-37942426 None:intergenic 25.0%
! GAGTTAAGAAAACAATATTC+TGG - chr2_1:37942409-37942428 None:intergenic 25.0%
!! ATTGTTTTCTTAACTCATTG+TGG + chr2_1:37942413-37942432 Msa0207250:intron 25.0%
!! TGATTCTTTAATTTCATCCA+AGG - chr2_1:37942635-37942654 None:intergenic 25.0%
!!! ACTGTATCTTTTGAAAAACA+AGG + chr2_1:37942712-37942731 Msa0207250:three_prime_UTR 25.0%
!!! CTGTATCTTTTGAAAAACAA+GGG + chr2_1:37942713-37942732 Msa0207250:three_prime_UTR 25.0%
TCTGCTATGAAATGTGAAAA+TGG - chr2_1:37937696-37937715 None:intergenic 30.0%
TTACCATGAAAAATCCAACT+GGG - chr2_1:37937909-37937928 None:intergenic 30.0%
TTTACCATGAAAAATCCAAC+TGG - chr2_1:37937910-37937929 None:intergenic 30.0%
TGTTATCAAGAAGATGTTTG+TGG + chr2_1:37938005-37938024 Msa0207250:intron 30.0%
! ACTTTCATCTTTCTTTTAGC+TGG - chr2_1:37938133-37938152 None:intergenic 30.0%
CTTCATGTTAGAATCAATTC+AGG - chr2_1:37938475-37938494 None:intergenic 30.0%
ATTGAATGTAAAGTGGTGTT+TGG - chr2_1:37938577-37938596 None:intergenic 30.0%
AAACCAATCATGCACTTATT+TGG + chr2_1:37938641-37938660 Msa0207250:intron 30.0%
CAGAAGTTTGAACATGTAAA+AGG + chr2_1:37938732-37938751 Msa0207250:intron 30.0%
TTTATTATTTACACCTCCAC+AGG - chr2_1:37938784-37938803 None:intergenic 30.0%
ATATAAACGGACACATAAGA+TGG - chr2_1:37939224-37939243 None:intergenic 30.0%
!!! GTTTGAATGTTAGTTTTCTG+TGG + chr2_1:37939544-37939563 Msa0207250:intron 30.0%
! ATTTCAACCGATTTATCAGA+AGG - chr2_1:37939656-37939675 None:intergenic 30.0%
AAAGAATGTTCCTGATTTAC+GGG - chr2_1:37939705-37939724 None:intergenic 30.0%
ACATTTGCATCAACAACTAA+AGG - chr2_1:37939835-37939854 None:intergenic 30.0%
AATGTTGTTGAATCAAGTCT+CGG + chr2_1:37939850-37939869 Msa0207250:intron 30.0%
! CTCAAAAAACAAGTTGAGAA+AGG - chr2_1:37940191-37940210 None:intergenic 30.0%
!! TGCTGATATATGTTTCTAGT+TGG + chr2_1:37940242-37940261 Msa0207250:intron 30.0%
!! GCTGATATATGTTTCTAGTT+GGG + chr2_1:37940243-37940262 Msa0207250:intron 30.0%
!!! ATGTTTCTAGTTGGGTTTTT+AGG + chr2_1:37940251-37940270 Msa0207250:intron 30.0%
! ACCTAGAAGTTTTACGTTAT+GGG + chr2_1:37940293-37940312 Msa0207250:intron 30.0%
AACCATATCTGATTAAAGGT+GGG - chr2_1:37940384-37940403 None:intergenic 30.0%
AAACCATATCTGATTAAAGG+TGG - chr2_1:37940385-37940404 None:intergenic 30.0%
!! ACTTCGGCACTTTAAAATTT+GGG - chr2_1:37940478-37940497 None:intergenic 30.0%
!! TACTTCGGCACTTTAAAATT+TGG - chr2_1:37940479-37940498 None:intergenic 30.0%
TAAATGCAACGAATTTGAAG+TGG + chr2_1:37940499-37940518 Msa0207250:intron 30.0%
!! GTAATACCCAAAGTACTTTT+AGG + chr2_1:37940755-37940774 Msa0207250:intron 30.0%
TAAAACAGAAACGTTGTGTT+TGG - chr2_1:37940791-37940810 None:intergenic 30.0%
ATTCAAAAATCATCTTCCCA+TGG + chr2_1:37940846-37940865 Msa0207250:intron 30.0%
GTTCAAAAAACAAGTACCAT+GGG - chr2_1:37940865-37940884 None:intergenic 30.0%
TGTTCAAAAAACAAGTACCA+TGG - chr2_1:37940866-37940885 None:intergenic 30.0%
GATCAAAACAAAATTCACAC+AGG - chr2_1:37940907-37940926 None:intergenic 30.0%
AAAACCAGAAGATCAAAACA+GGG - chr2_1:37940930-37940949 None:intergenic 30.0%
TAAAACCAGAAGATCAAAAC+AGG - chr2_1:37940931-37940950 None:intergenic 30.0%
! CAATTAGGAGCATATAAAAG+TGG - chr2_1:37941005-37941024 None:intergenic 30.0%
ACATGATCAATTGTGCAATT+AGG - chr2_1:37941020-37941039 None:intergenic 30.0%
!! TGGTAGTGGAAAAACAAATA+TGG + chr2_1:37941081-37941100 Msa0207250:intron 30.0%
TTATCAGTTCTATGCATACA+CGG - chr2_1:37941234-37941253 None:intergenic 30.0%
!! TATTGTTTCTACTTTGGAAC+AGG + chr2_1:37941290-37941309 Msa0207250:intron 30.0%
!! ATTGTTTCTACTTTGGAACA+GGG + chr2_1:37941291-37941310 Msa0207250:intron 30.0%
! TAATTTGGACAAACTGCTTT+TGG + chr2_1:37941440-37941459 Msa0207250:intron 30.0%
AGTACAAAATGTTGTGCAAT+AGG + chr2_1:37941480-37941499 Msa0207250:intron 30.0%
ACAAAATTGTCTTTGCAACA+AGG - chr2_1:37941568-37941587 None:intergenic 30.0%
GTGTCTTTATTCTATAGTTC+TGG + chr2_1:37941586-37941605 Msa0207250:intron 30.0%
!! TCTTTATTCTATAGTTCTGG+CGG + chr2_1:37941589-37941608 Msa0207250:intron 30.0%
! TCCCAAAATTACTGTGTTTT+AGG + chr2_1:37941670-37941689 Msa0207250:intron 30.0%
! GCCTAAAACACAGTAATTTT+GGG - chr2_1:37941674-37941693 None:intergenic 30.0%
! TGCCTAAAACACAGTAATTT+TGG - chr2_1:37941675-37941694 None:intergenic 30.0%
!!! AAAACAACTTTTGAGGTTCA+TGG - chr2_1:37941897-37941916 None:intergenic 30.0%
! CGAACTTGATAACTTAAAGT+CGG - chr2_1:37941958-37941977 None:intergenic 30.0%
! GTTTGATACAGTTGTTTCAT+AGG - chr2_1:37942195-37942214 None:intergenic 30.0%
CTTAGTTTATATCTTGGTTG+AGG + chr2_1:37942262-37942281 Msa0207250:intron 30.0%
!!! TGTGGTTTTGTTTGATAGAA+AGG + chr2_1:37942431-37942450 Msa0207250:intron 30.0%
ATCTGTGACAAAGTAAGTAT+GGG - chr2_1:37942819-37942838 None:intergenic 30.0%
!! CTGTGGTTATCAAGTTTTGT+TGG - chr2_1:37937668-37937687 None:intergenic 35.0%
! ATGTGAAAATGGTGTTTCTG+TGG - chr2_1:37937685-37937704 None:intergenic 35.0%
GCAAAATCAATTCTACTCGA+AGG + chr2_1:37938271-37938290 Msa0207250:intron 35.0%
AGACTCAGTTCTACACTTAT+AGG + chr2_1:37938308-37938327 Msa0207250:intron 35.0%
!! GTTTGGCTTCACTTTTAGAA+TGG - chr2_1:37938345-37938364 None:intergenic 35.0%
TAATCAATTATGACTGCCAC+AGG - chr2_1:37938392-37938411 None:intergenic 35.0%
GTGGCAGTCATAATTGATTA+TGG + chr2_1:37938392-37938411 Msa0207250:intron 35.0%
GCAGTCATAATTGATTATGG+AGG + chr2_1:37938395-37938414 Msa0207250:intron 35.0%
CATGTTAGAATCAATTCAGG+AGG - chr2_1:37938472-37938491 None:intergenic 35.0%
GTACCAAATAAGTGCATGAT+TGG - chr2_1:37938647-37938666 None:intergenic 35.0%
TTATTTGGTACCTCAGGAAT+TGG + chr2_1:37938656-37938675 Msa0207250:intron 35.0%
TATTTGGTACCTCAGGAATT+GGG + chr2_1:37938657-37938676 Msa0207250:intron 35.0%
!!! TTTGAAAGCTTTTTGGGTTC+TGG + chr2_1:37938709-37938728 Msa0207250:intron 35.0%
CATAATACTGGTACCAGAAT+TGG - chr2_1:37938862-37938881 None:intergenic 35.0%
ACAGACACACTTCATATTGA+AGG + chr2_1:37938989-37939008 Msa0207250:intron 35.0%
CAGACACACTTCATATTGAA+GGG + chr2_1:37938990-37939009 Msa0207250:intron 35.0%
AGACACACTTCATATTGAAG+GGG + chr2_1:37938991-37939010 Msa0207250:intron 35.0%
ATGAAGCACGAGCATATAAA+CGG - chr2_1:37939237-37939256 None:intergenic 35.0%
TTTATATGCTCGTGCTTCAT+AGG + chr2_1:37939237-37939256 Msa0207250:intron 35.0%
TAAATATATACCGGTCTAGC+CGG + chr2_1:37939412-37939431 Msa0207250:intron 35.0%
TGTTGCTGTGCTTTCAATTT+CGG + chr2_1:37939575-37939594 Msa0207250:intron 35.0%
AGTGGAACCTTCTGATAAAT+CGG + chr2_1:37939646-37939665 Msa0207250:intron 35.0%
AGTAACTGCTGTTGTTATCA+AGG + chr2_1:37939739-37939758 Msa0207250:CDS 35.0%
! ATTTTGTTGAACGTGAGTCA+TGG + chr2_1:37939897-37939916 Msa0207250:intron 35.0%
! TTTTGTTGAACGTGAGTCAT+GGG + chr2_1:37939898-37939917 Msa0207250:intron 35.0%
CATGGGAGATTCATTATTGT+TGG + chr2_1:37939915-37939934 Msa0207250:intron 35.0%
TTATACTACTAGCTGCTACT+TGG + chr2_1:37940078-37940097 Msa0207250:intron 35.0%
AAAGTTGAGAAAGGACAATC+TGG - chr2_1:37940142-37940161 None:intergenic 35.0%
! GACCTAGAAGTTTTACGTTA+TGG + chr2_1:37940292-37940311 Msa0207250:intron 35.0%
! CCTAGAAGTTTTACGTTATG+GGG + chr2_1:37940294-37940313 Msa0207250:intron 35.0%
! CTAGAAGTTTTACGTTATGG+GGG + chr2_1:37940295-37940314 Msa0207250:intron 35.0%
ATCCTGTAATACATTGACGA+TGG + chr2_1:37940585-37940604 Msa0207250:intron 35.0%
AAACCAGAAGATCAAAACAG+GGG - chr2_1:37940929-37940948 None:intergenic 35.0%
TTTCCTATACATCTTGGTAG+TGG + chr2_1:37941067-37941086 Msa0207250:intron 35.0%
TTTCCACTACCAAGATGTAT+AGG - chr2_1:37941073-37941092 None:intergenic 35.0%
GCTGACCATAAAGATTCATT+GGG + chr2_1:37941318-37941337 Msa0207250:CDS 35.0%
CAAATTATGCTACGCTATAG+TGG - chr2_1:37941427-37941446 None:intergenic 35.0%
CACTATAGCGTAGCATAATT+TGG + chr2_1:37941425-37941444 Msa0207250:intron 35.0%
TTGTACTAAATAGCGTATCG+CGG - chr2_1:37941467-37941486 None:intergenic 35.0%
TTTGGATAGCAGAAAATAGC+AGG - chr2_1:37941532-37941551 None:intergenic 35.0%
! CAAGGCAGTGTTATCAATTT+TGG - chr2_1:37941550-37941569 None:intergenic 35.0%
!! GTAATTTTGGGAGTAAGCTT+AGG - chr2_1:37941662-37941681 None:intergenic 35.0%
TGCTTATAAATGTGACCAGA+GGG - chr2_1:37941801-37941820 None:intergenic 35.0%
TTGCTTATAAATGTGACCAG+AGG - chr2_1:37941802-37941821 None:intergenic 35.0%
TTGCTTATAAATATGACCGG+AGG + chr2_1:37941917-37941936 Msa0207250:intron 35.0%
TGCTTATAAATATGACCGGA+GGG + chr2_1:37941918-37941937 Msa0207250:intron 35.0%
TGATAACTTAAAGTCGGAGA+AGG - chr2_1:37941952-37941971 None:intergenic 35.0%
!! AAACTGATAGTTTCTGGGAT+CGG + chr2_1:37942097-37942116 Msa0207250:intron 35.0%
TGAAAAACAAGGGAAGAGAA+AGG + chr2_1:37942723-37942742 Msa0207250:three_prime_UTR 35.0%
!! ATGGGTTAGGCCATTTATAA+GGG - chr2_1:37942801-37942820 None:intergenic 35.0%
!! TATGGGTTAGGCCATTTATA+AGG - chr2_1:37942802-37942821 None:intergenic 35.0%
TGACAAAGTAAGTATGGGTT+AGG - chr2_1:37942814-37942833 None:intergenic 35.0%
GATCTGTGACAAAGTAAGTA+TGG - chr2_1:37942820-37942839 None:intergenic 35.0%
TTTACATTGAGCTCGAACGA+CGG - chr2_1:37937815-37937834 None:intergenic 40.0%
!!! GATTTTTTTGATGGCCCAGT+TGG + chr2_1:37937892-37937911 Msa0207250:intron 40.0%
CCAAACATAGGATGCATGTT+TGG - chr2_1:37938362-37938381 None:intergenic 40.0%
CCAAACATGCATCCTATGTT+TGG + chr2_1:37938359-37938378 Msa0207250:intron 40.0%
ATGCACTTATTTGGTACCTC+AGG + chr2_1:37938650-37938669 Msa0207250:intron 40.0%
ACATCAAAACCCAATTCCTG+AGG - chr2_1:37938669-37938688 None:intergenic 40.0%
TTTAAACTCCCACACCAGAA+TGG - chr2_1:37939045-37939064 None:intergenic 40.0%
!!! GTACTTTTTTGGACTCGACA+TGG + chr2_1:37939066-37939085 Msa0207250:intron 40.0%
! ACTAACCGGCACTTCAATTT+TGG + chr2_1:37939108-37939127 Msa0207250:intron 40.0%
! GTACTAGGTTAATGGGTCAT+TGG - chr2_1:37939453-37939472 None:intergenic 40.0%
CAGACGAGTACTAGGTTAAT+GGG - chr2_1:37939460-37939479 None:intergenic 40.0%
TCAGACGAGTACTAGGTTAA+TGG - chr2_1:37939461-37939480 None:intergenic 40.0%
ATTAACCTAGTACTCGTCTG+AGG + chr2_1:37939460-37939479 Msa0207250:intron 40.0%
! GAAAGCACAGCAACAGAATT+TGG - chr2_1:37939570-37939589 None:intergenic 40.0%
!! TAATGTGCTGGTTCTTTCAG+TGG + chr2_1:37939628-37939647 Msa0207250:intron 40.0%
!! ACATTCTTTTGTGCCGACAA+AGG + chr2_1:37939716-37939735 Msa0207250:CDS 40.0%
AACAGCAGTTACTCCTTTGT+CGG - chr2_1:37939732-37939751 None:intergenic 40.0%
!!! GGGATCTTTACCTGTTTTTG+TGG + chr2_1:37940005-37940024 Msa0207250:intron 40.0%
CCCCATAACGTAAAACTTCT+AGG - chr2_1:37940297-37940316 None:intergenic 40.0%
GTCCCACCTTTAATCAGATA+TGG + chr2_1:37940379-37940398 Msa0207250:intron 40.0%
! CCATTACCAAAACTGGCTTA+TGG - chr2_1:37940441-37940460 None:intergenic 40.0%
!! CCATAAGCCAGTTTTGGTAA+TGG + chr2_1:37940438-37940457 Msa0207250:intron 40.0%
AAATTTGGGTAGGCCTAACT+CGG - chr2_1:37940464-37940483 None:intergenic 40.0%
!! CGGCACTTTAAAATTTGGGT+AGG - chr2_1:37940474-37940493 None:intergenic 40.0%
GACCATCGTCAATGTATTAC+AGG - chr2_1:37940590-37940609 None:intergenic 40.0%
AACCTCCAAGTTTGATATGC+TGG + chr2_1:37941125-37941144 Msa0207250:intron 40.0%
ACCTCCAAGTTTGATATGCT+GGG + chr2_1:37941126-37941145 Msa0207250:intron 40.0%
TCATCCCAGCATATCAAACT+TGG - chr2_1:37941133-37941152 None:intergenic 40.0%
TCCGGATTGTCATTGTTGAT+AGG + chr2_1:37941180-37941199 Msa0207250:intron 40.0%
GCCTATCAACAATGACAATC+CGG - chr2_1:37941184-37941203 None:intergenic 40.0%
!! TTCTACTTTGGAACAGGGTT+TGG + chr2_1:37941296-37941315 Msa0207250:intron 40.0%
GGCTGACCATAAAGATTCAT+TGG + chr2_1:37941317-37941336 Msa0207250:CDS 40.0%
GTGCACCCAATGAATCTTTA+TGG - chr2_1:37941326-37941345 None:intergenic 40.0%
!! CAAGAAGTATTTACCGGCAA+GGG - chr2_1:37941356-37941375 None:intergenic 40.0%
!! ACAAGAAGTATTTACCGGCA+AGG - chr2_1:37941357-37941376 None:intergenic 40.0%
TTATGACGATAAAGCTGCTG+AGG + chr2_1:37941695-37941714 Msa0207250:CDS 40.0%
! GAGTGAGAAAAAGCATGCAA+TGG - chr2_1:37942461-37942480 None:intergenic 40.0%
!! ACTCCTGATAACGATTTTGC+CGG + chr2_1:37942477-37942496 Msa0207250:CDS 40.0%
TCATCTGTGCCCCTTATAAA+TGG + chr2_1:37942788-37942807 Msa0207250:three_prime_UTR 40.0%
! TGGGTTAGGCCATTTATAAG+GGG - chr2_1:37942800-37942819 None:intergenic 40.0%
TTACATTGAGCTCGAACGAC+GGG - chr2_1:37937814-37937833 None:intergenic 45.0%
! TGGCCCAGTTGGATTTTTCA+TGG + chr2_1:37937903-37937922 Msa0207250:intron 45.0%
CAGCTTGAACTGACCAATTC+TGG + chr2_1:37938846-37938865 Msa0207250:intron 45.0%
! TTTTTGGACTCGACATGGCT+TGG + chr2_1:37939071-37939090 Msa0207250:intron 45.0%
AAGCAGCCAGAAAGACTAAC+CGG + chr2_1:37939094-37939113 Msa0207250:intron 45.0%
TCCAGCCAAAATTGAAGTGC+CGG - chr2_1:37939116-37939135 None:intergenic 45.0%
CGCGCATGTGTGAATGTTAA+CGG + chr2_1:37939198-37939217 Msa0207250:intron 45.0%
TTGGTCGATCAGTGAATCAC+CGG - chr2_1:37939434-37939453 None:intergenic 45.0%
TACATCCTCAGACGAGTACT+AGG - chr2_1:37939468-37939487 None:intergenic 45.0%
TACTCGTCTGAGGATGTAAC+TGG + chr2_1:37939470-37939489 Msa0207250:intron 45.0%
GAGCAATATGCCCGTAAATC+AGG + chr2_1:37939692-37939711 Msa0207250:CDS 45.0%
CACTCACACACCACAAAAAC+AGG - chr2_1:37940018-37940037 None:intergenic 45.0%
! TCCTCTCCATAAGCCAGTTT+TGG + chr2_1:37940432-37940451 Msa0207250:intron 45.0%
! ACCAAAACTGGCTTATGGAG+AGG - chr2_1:37940436-37940455 None:intergenic 45.0%
AACTCGGCCATTACCAAAAC+TGG - chr2_1:37940448-37940467 None:intergenic 45.0%
!!! GTTTTGGTAATGGCCGAGTT+AGG + chr2_1:37940448-37940467 Msa0207250:intron 45.0%
TCTACGTCTATCACTGTGGT+GGG - chr2_1:37940544-37940563 None:intergenic 45.0%
ATCTACGTCTATCACTGTGG+TGG - chr2_1:37940545-37940564 None:intergenic 45.0%
CAGATCTACGTCTATCACTG+TGG - chr2_1:37940548-37940567 None:intergenic 45.0%
!!! GATCCCCTGTTTTGATCTTC+TGG + chr2_1:37940923-37940942 Msa0207250:intron 45.0%
TCCCAGCATATCAAACTTGG+AGG - chr2_1:37941130-37941149 None:intergenic 45.0%
!! ATTCTATAGTTCTGGCGGTG+TGG + chr2_1:37941594-37941613 Msa0207250:intron 45.0%
GGTAGGCACATCTTTACAAC+TGG + chr2_1:37941763-37941782 Msa0207250:intron 45.0%
TGGCTATTACTTACTCCCTC+TGG + chr2_1:37941783-37941802 Msa0207250:intron 45.0%
GAGAAGGAAAATACTCCCTC+CGG - chr2_1:37941936-37941955 None:intergenic 45.0%
ATCCAAGGTGATAGTCTGCA+AGG - chr2_1:37942620-37942639 None:intergenic 45.0%
GAAGCTTGAGAGGTCATTGC+TGG - chr2_1:37937730-37937749 None:intergenic 50.0%
AGCGAAGGTTGAAGCTTGAG+AGG - chr2_1:37937740-37937759 None:intergenic 50.0%
TACATTGAGCTCGAACGACG+GGG - chr2_1:37937813-37937832 None:intergenic 50.0%
ACAGGCGTGGAACCAAACAT+AGG - chr2_1:37938374-37938393 None:intergenic 50.0%
! TATGTTTGGTTCCACGCCTG+TGG + chr2_1:37938373-37938392 Msa0207250:intron 50.0%
AATTATGACTGCCACAGGCG+TGG - chr2_1:37938387-37938406 None:intergenic 50.0%
!! GAAGTGCCGGTTAGTCTTTC+TGG - chr2_1:37939103-37939122 None:intergenic 50.0%
!! ACCGGCACTTCAATTTTGGC+TGG + chr2_1:37939112-37939131 Msa0207250:intron 50.0%
TACGTCTATCACTGTGGTGG+GGG - chr2_1:37940542-37940561 None:intergenic 50.0%
CTACGTCTATCACTGTGGTG+GGG - chr2_1:37940543-37940562 None:intergenic 50.0%
TCTCTCTCATGGGAACACAC+GGG - chr2_1:37941743-37941762 None:intergenic 50.0%
CTCTCTCTCATGGGAACACA+CGG - chr2_1:37941744-37941763 None:intergenic 50.0%
TGTTCCCATGAGAGAGAGGT+AGG + chr2_1:37941746-37941765 Msa0207250:intron 50.0%
TGTGCCTACCTCTCTCTCAT+GGG - chr2_1:37941753-37941772 None:intergenic 50.0%
ATGTGCCTACCTCTCTCTCA+TGG - chr2_1:37941754-37941773 None:intergenic 50.0%
TCGCCGGCAAAATCGTTATC+AGG - chr2_1:37942483-37942502 None:intergenic 50.0%
CGGAATTACCTGTTCATCGC+CGG - chr2_1:37942499-37942518 None:intergenic 50.0%
TGCCTTGCAGACTATCACCT+TGG + chr2_1:37942615-37942634 Msa0207250:intron 50.0%
GCTGCACATGTGCAAACCTG+TGG + chr2_1:37938765-37938784 Msa0207250:intron 55.0%
GCACATGTGCAAACCTGTGG+AGG + chr2_1:37938768-37938787 Msa0207250:intron 55.0%
TCTGAGTATCCGACGCGTGT+CGG + chr2_1:37939014-37939033 Msa0207250:intron 55.0%
TCGGACACTCCATTCTGGTG+TGG + chr2_1:37939033-37939052 Msa0207250:intron 55.0%
CGGACACTCCATTCTGGTGT+GGG + chr2_1:37939034-37939053 Msa0207250:intron 55.0%
! CAGTGAATCACCGGCTAGAC+CGG - chr2_1:37939425-37939444 None:intergenic 55.0%
ATTTACCGGCAAGGGCAGAG+TGG - chr2_1:37941348-37941367 None:intergenic 55.0%
GGCGGTGTGGTTGCATACAT+AGG + chr2_1:37941607-37941626 Msa0207250:intron 55.0%
! CTGAGGCTGCGCAAGGATTT+TGG + chr2_1:37941712-37941731 Msa0207250:CDS 55.0%
CGTGTGTTCCCATGAGAGAG+AGG + chr2_1:37941742-37941761 Msa0207250:CDS 55.0%
! CGATTTTGCCGGCGATGAAC+AGG + chr2_1:37942488-37942507 Msa0207250:CDS 55.0%
GGAGGAAACGGAGAGAGCGA+AGG - chr2_1:37937755-37937774 None:intergenic 60.0%
TTGAGCTCGAACGACGGGGA+AGG - chr2_1:37937809-37937828 None:intergenic 60.0%
! ATGGAGTGTCCGACACGCGT+CGG - chr2_1:37939026-37939045 None:intergenic 60.0%
GCGTGTCGGACACTCCATTC+TGG + chr2_1:37939028-37939047 Msa0207250:intron 60.0%
AAAGCTGCTGAGGCTGCGCA+AGG + chr2_1:37941705-37941724 Msa0207250:CDS 60.0%
AGGGGAAGGGGCGGAGGAAA+CGG - chr2_1:37937767-37937786 None:intergenic 65.0%
!! GAACGACGGGGAAGGTGCTG+CGG - chr2_1:37937801-37937820 None:intergenic 65.0%
GTGCACCACTCTGCCCTTGC+CGG + chr2_1:37941340-37941359 Msa0207250:CDS 65.0%
ACGACGGAGAGGGGAAGGGG+CGG - chr2_1:37937776-37937795 None:intergenic 70.0%
GCGACGACGGAGAGGGGAAG+GGG - chr2_1:37937779-37937798 None:intergenic 70.0%
GGCGACGACGGAGAGGGGAA+GGG - chr2_1:37937780-37937799 None:intergenic 70.0%
TGCTGCGGCGACGACGGAGA+GGG - chr2_1:37937786-37937805 None:intergenic 70.0%
!! GGAAGGTGCTGCGGCGACGA+CGG - chr2_1:37937792-37937811 None:intergenic 70.0%
ACGGAGAGGGGAAGGGGCGG+AGG - chr2_1:37937773-37937792 None:intergenic 75.0%
CGGCGACGACGGAGAGGGGA+AGG - chr2_1:37937781-37937800 None:intergenic 75.0%
GCTGCGGCGACGACGGAGAG+GGG - chr2_1:37937785-37937804 None:intergenic 75.0%
GTGCTGCGGCGACGACGGAG+AGG - chr2_1:37937787-37937806 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 37937614 37942919 37937614 ID=Msa0207250;Name=Msa0207250
chr2_1 mRNA 37937614 37942919 37937614 ID=Msa0207250-mRNA-1;Parent=Msa0207250;Name=Msa0207250-mRNA-1;_AED=0.15;_eAED=0.15;_QI=119|1|1|1|1|1|6|250|145
chr2_1 exon 37937614 37937829 37937614 ID=Msa0207250-mRNA-1:exon:12198;Parent=Msa0207250-mRNA-1
chr2_1 exon 37939648 37939760 37939648 ID=Msa0207250-mRNA-1:exon:12199;Parent=Msa0207250-mRNA-1
chr2_1 exon 37941312 37941361 37941312 ID=Msa0207250-mRNA-1:exon:12200;Parent=Msa0207250-mRNA-1
chr2_1 exon 37941692 37941763 37941692 ID=Msa0207250-mRNA-1:exon:12201;Parent=Msa0207250-mRNA-1
chr2_1 exon 37942449 37942509 37942449 ID=Msa0207250-mRNA-1:exon:12202;Parent=Msa0207250-mRNA-1
chr2_1 exon 37942625 37942919 37942625 ID=Msa0207250-mRNA-1:exon:12203;Parent=Msa0207250-mRNA-1
chr2_1 five_prime_UTR 37937614 37937732 37937614 ID=Msa0207250-mRNA-1:five_prime_utr;Parent=Msa0207250-mRNA-1
chr2_1 CDS 37937733 37937829 37937733 ID=Msa0207250-mRNA-1:cds;Parent=Msa0207250-mRNA-1
chr2_1 CDS 37939648 37939760 37939648 ID=Msa0207250-mRNA-1:cds;Parent=Msa0207250-mRNA-1
chr2_1 CDS 37941312 37941361 37941312 ID=Msa0207250-mRNA-1:cds;Parent=Msa0207250-mRNA-1
chr2_1 CDS 37941692 37941763 37941692 ID=Msa0207250-mRNA-1:cds;Parent=Msa0207250-mRNA-1
chr2_1 CDS 37942449 37942509 37942449 ID=Msa0207250-mRNA-1:cds;Parent=Msa0207250-mRNA-1
chr2_1 CDS 37942625 37942669 37942625 ID=Msa0207250-mRNA-1:cds;Parent=Msa0207250-mRNA-1
chr2_1 three_prime_UTR 37942670 37942919 37942670 ID=Msa0207250-mRNA-1:three_prime_utr;Parent=Msa0207250-mRNA-1
Gene Sequence

>Msa0207250

ATGACCTCTCAAGCTTCAACCTTCGCTCTCTCCGTTTCCTCCGCCCCTTCCCCTCTCCGTCGTCGCCGCAGCACCTTCCCCGTCGTTCGAGCTCAATTGGAACCTTCTGATAAATCGGTTGAAATTATGAGGAAGTTCTCAGAGCAATATGCCCGTAAATCAGGAACATTCTTTTGTGCCGACAAAGGAGTAACTGCTGTTGTTATCAAGGGTTTGGCTGACCATAAAGATTCATTGGGTGCACCACTCTGCCCTTGCCGGCATTATGACGATAAAGCTGCTGAGGCTGCGCAAGGATTTTGGAATTGCCCGTGTGTTCCCATGAGAGAGAGAAAGGAGTGCCATTGCATGCTTTTTCTCACTCCTGATAACGATTTTGCCGGCGATGAACAGACTATCACCTTGGATGAAATTAAAGAATCAACAGCAAATATGTAA

Protein sequence

>Msa0207250

MTSQASTFALSVSSAPSPLRRRRSTFPVVRAQLEPSDKSVEIMRKFSEQYARKSGTFFCADKGVTAVVIKGLADHKDSLGAPLCPCRHYDDKAAEAAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGDEQTITLDEIKESTANM*