AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038150 MtrunA17_Chr1g0201561 97.714 175 3 1 1 174 1 175 3.62e-122 341
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038150 AT1G34000.1 65.909 176 54 5 1 174 1 172 4.95e-55 172

Find 42 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATCCTTCTCTCGAATTT+TGG 0.108201 1_1:+67435071 Msa0038150:CDS
GAATTGTGCATCATGGAAAT+TGG 0.209181 1_1:-67435267 None:intergenic
CAGAAGCCAAGTTCTGTTAT+TGG 0.242057 1_1:+67433403 Msa0038150:CDS
TCCATTGCTAATCTCATTCT+TGG 0.259463 1_1:-67433548 None:intergenic
GTGTATTTATCTTTGTTCTT+TGG 0.267188 1_1:-67433111 None:intergenic
AGCTTTATGCTGTTACTATA+AGG 0.314703 1_1:+67433266 Msa0038150:CDS
TTCTTCAGATGGGCAATGTT+TGG 0.321634 1_1:+67434990 Msa0038150:intron
AAAGGTTGAGGAAGATTAGA+AGG 0.364940 1_1:-67433343 None:intergenic
GGCTTCTGTGGTTGTGGAGG+AGG 0.386924 1_1:-67433388 None:intergenic
GAGGAAGATGAATGAGTTGT+TGG 0.427102 1_1:-67433199 None:intergenic
AATTGTGCATCATGGAAATT+GGG 0.429200 1_1:-67435266 None:intergenic
GTCTGAGCCCGTTGCAAACT+CGG 0.430085 1_1:-67435033 None:intergenic
GGTGAAGGTTTCAAAGGTTG+AGG 0.438534 1_1:-67433355 None:intergenic
TCATCTCCAATAACAGAACT+TGG 0.445908 1_1:-67433409 None:intergenic
AGGAAGATGAATGAGTTGTT+GGG 0.449866 1_1:-67433198 None:intergenic
GAACTTGGCTTCTGTGGTTG+TGG 0.451217 1_1:-67433394 None:intergenic
TTGCTAACCGAGTTTGCAAC+GGG 0.454057 1_1:+67435026 Msa0038150:CDS
GGAGGCTGAGAAGGAGGTGA+AGG 0.470690 1_1:-67433370 None:intergenic
ATAAGGAATGTTCAGAATGA+TGG 0.482112 1_1:+67433283 Msa0038150:CDS
AGATGAAGTTGAACATGAAG+AGG 0.502915 1_1:-67433218 None:intergenic
CTTGAACAAGCTGCAGATCA+AGG 0.507475 1_1:+67433505 Msa0038150:CDS
CTTGGCTTCTGTGGTTGTGG+AGG 0.510538 1_1:-67433391 None:intergenic
TATAGTAACAGCATAAAGCT+TGG 0.513051 1_1:-67433263 None:intergenic
TTAGAAGGTTCTTTCACAGA+AGG 0.521152 1_1:-67433328 None:intergenic
AAAGCAAGAATTGTGCATCA+TGG 0.527473 1_1:-67435274 None:intergenic
ATAACAGAACTTGGCTTCTG+TGG 0.527549 1_1:-67433400 None:intergenic
TGTGGAGGAGGCTGAGAAGG+AGG 0.535122 1_1:-67433376 None:intergenic
TCTTTCACAGAAGGAGCCGC+TGG 0.536412 1_1:-67433319 None:intergenic
GTGTTATCAAAATCAGAGGA+TGG 0.539556 1_1:-67433059 None:intergenic
GGTTGTGGAGGAGGCTGAGA+AGG 0.543573 1_1:-67433379 None:intergenic
GTTGCTAACCGAGTTTGCAA+CGG 0.550254 1_1:+67435025 Msa0038150:CDS
AGAGGATGGGTGTGTGGACA+AGG 0.551464 1_1:-67433045 None:intergenic
CTATCCCAAAATTCGAGAGA+AGG 0.568832 1_1:-67435076 None:intergenic
GAAGGAGGTGAAGGTTTCAA+AGG 0.586451 1_1:-67433361 None:intergenic
GCCAAGAATGAGATTAGCAA+TGG 0.587710 1_1:+67433547 Msa0038150:CDS
TGCATCATGGAAATTGGGAA+AGG 0.591648 1_1:-67435261 None:intergenic
TGTTATCAAAATCAGAGGAT+GGG 0.600673 1_1:-67433058 None:intergenic
AGAATGAGATTAGCAATGGA+AGG 0.602777 1_1:+67433551 Msa0038150:CDS
CATAGTGTTATCAAAATCAG+AGG 0.614036 1_1:-67433063 None:intergenic
AAAATCAGAGGATGGGTGTG+TGG 0.614445 1_1:-67433051 None:intergenic
GGAGCCGCTGGTCTTCTGAG+AGG 0.691891 1_1:-67433307 None:intergenic
TGGTCCTCTCAGAAGACCAG+CGG 0.739227 1_1:+67433303 Msa0038150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAATTAATATTTAAGAA+AGG - chr1_1:67433632-67433651 None:intergenic 10.0%
!!! TTTATTTTATCATTTGTTAT+AGG + chr1_1:67433852-67433871 Msa0038150:intron 10.0%
!!! AATTACAAATTATTTTCATT+TGG + chr1_1:67434414-67434433 Msa0038150:intron 10.0%
!!! ATTACAAATTATTTTCATTT+GGG + chr1_1:67434415-67434434 Msa0038150:intron 10.0%
!!! TTTAAAATGTAAAATCATTA+CGG - chr1_1:67434953-67434972 None:intergenic 10.0%
!! TTCAAATTAATATTTAAGAA+AGG - chr1_1:67433632-67433651 None:intergenic 10.0%
!!! TTTATTTTATCATTTGTTAT+AGG + chr1_1:67433852-67433871 Msa0038150:intron 10.0%
!!! AATTACAAATTATTTTCATT+TGG + chr1_1:67434414-67434433 Msa0038150:intron 10.0%
!!! ATTACAAATTATTTTCATTT+GGG + chr1_1:67434415-67434434 Msa0038150:intron 10.0%
!!! TTTAAAATGTAAAATCATTA+CGG - chr1_1:67434953-67434972 None:intergenic 10.0%
!!! AATTCTTTCTATTTTTGAAT+TGG + chr1_1:67433588-67433607 Msa0038150:intron 15.0%
!!! ATTCTTTCTATTTTTGAATT+GGG + chr1_1:67433589-67433608 Msa0038150:intron 15.0%
!! AGAATTAAAGCAATAAATTT+GGG - chr1_1:67434077-67434096 None:intergenic 15.0%
!! AAGAATTAAAGCAATAAATT+TGG - chr1_1:67434078-67434097 None:intergenic 15.0%
!!! TTAGATATGATAAGTTTTTT+TGG + chr1_1:67435295-67435314 Msa0038150:three_prime_UTR 15.0%
!!! AATTCTTTCTATTTTTGAAT+TGG + chr1_1:67433588-67433607 Msa0038150:intron 15.0%
!!! ATTCTTTCTATTTTTGAATT+GGG + chr1_1:67433589-67433608 Msa0038150:intron 15.0%
!! AGAATTAAAGCAATAAATTT+GGG - chr1_1:67434077-67434096 None:intergenic 15.0%
!! AAGAATTAAAGCAATAAATT+TGG - chr1_1:67434078-67434097 None:intergenic 15.0%
!!! TACAACTTTTTCTTTTGTTT+TGG - chr1_1:67433090-67433109 None:intergenic 20.0%
!!! TTCTTTCTATTTTTGAATTG+GGG + chr1_1:67433590-67433609 Msa0038150:intron 20.0%
!! TAATGATTAATGATAACCTT+TGG + chr1_1:67434115-67434134 Msa0038150:intron 20.0%
!!! TGTGCTTTTATATATGAATA+TGG + chr1_1:67434895-67434914 Msa0038150:intron 20.0%
!!! TACAACTTTTTCTTTTGTTT+TGG - chr1_1:67433090-67433109 None:intergenic 20.0%
!!! TTCTTTCTATTTTTGAATTG+GGG + chr1_1:67433590-67433609 Msa0038150:intron 20.0%
!! TAATGATTAATGATAACCTT+TGG + chr1_1:67434115-67434134 Msa0038150:intron 20.0%
!!! TGTGCTTTTATATATGAATA+TGG + chr1_1:67434895-67434914 Msa0038150:intron 20.0%
! GTGTATTTATCTTTGTTCTT+TGG - chr1_1:67433114-67433133 None:intergenic 25.0%
!!! ATGTTACAGACATGTTTTTT+GGG - chr1_1:67433156-67433175 None:intergenic 25.0%
! TGATTGTGTTATCTTTATGT+TGG + chr1_1:67433659-67433678 Msa0038150:intron 25.0%
!!! AAGAACTAGTTAGGTTTTTT+TGG + chr1_1:67433685-67433704 Msa0038150:intron 25.0%
!! TCATGATGTTATTGATTGAA+CGG + chr1_1:67433993-67434012 Msa0038150:intron 25.0%
!! ACGAAACTTTTTGTCATTAA+GGG - chr1_1:67434212-67434231 None:intergenic 25.0%
! TAAAACATTCCAACTAATGT+AGG + chr1_1:67434256-67434275 Msa0038150:intron 25.0%
! AATTCAAATTACAGTGTGTT+GGG - chr1_1:67434391-67434410 None:intergenic 25.0%
! TAATTCAAATTACAGTGTGT+TGG - chr1_1:67434392-67434411 None:intergenic 25.0%
! ATTGATCAGATTTACAATTC+TGG - chr1_1:67434575-67434594 None:intergenic 25.0%
! GTATTATCTCTTGTTCAAAA+TGG + chr1_1:67434662-67434681 Msa0038150:intron 25.0%
!! GGCTTAGTTTAGTTTAAATA+AGG + chr1_1:67434753-67434772 Msa0038150:intron 25.0%
!! TAAAAGCACATTAGAAACAA+AGG - chr1_1:67434885-67434904 None:intergenic 25.0%
! GTGTATTTATCTTTGTTCTT+TGG - chr1_1:67433114-67433133 None:intergenic 25.0%
!!! ATGTTACAGACATGTTTTTT+GGG - chr1_1:67433156-67433175 None:intergenic 25.0%
! TGATTGTGTTATCTTTATGT+TGG + chr1_1:67433659-67433678 Msa0038150:intron 25.0%
!!! AAGAACTAGTTAGGTTTTTT+TGG + chr1_1:67433685-67433704 Msa0038150:intron 25.0%
!! TCATGATGTTATTGATTGAA+CGG + chr1_1:67433993-67434012 Msa0038150:intron 25.0%
!! ACGAAACTTTTTGTCATTAA+GGG - chr1_1:67434212-67434231 None:intergenic 25.0%
! TAAAACATTCCAACTAATGT+AGG + chr1_1:67434256-67434275 Msa0038150:intron 25.0%
! AATTCAAATTACAGTGTGTT+GGG - chr1_1:67434391-67434410 None:intergenic 25.0%
! TAATTCAAATTACAGTGTGT+TGG - chr1_1:67434392-67434411 None:intergenic 25.0%
! ATTGATCAGATTTACAATTC+TGG - chr1_1:67434575-67434594 None:intergenic 25.0%
! GTATTATCTCTTGTTCAAAA+TGG + chr1_1:67434662-67434681 Msa0038150:intron 25.0%
!! GGCTTAGTTTAGTTTAAATA+AGG + chr1_1:67434753-67434772 Msa0038150:intron 25.0%
!! TAAAAGCACATTAGAAACAA+AGG - chr1_1:67434885-67434904 None:intergenic 25.0%
TGTTATCAAAATCAGAGGAT+GGG - chr1_1:67433061-67433080 None:intergenic 30.0%
CATAGTGTTATCAAAATCAG+AGG - chr1_1:67433066-67433085 None:intergenic 30.0%
!!! TGTTACAGACATGTTTTTTG+GGG - chr1_1:67433155-67433174 None:intergenic 30.0%
!!! GATGTTACAGACATGTTTTT+TGG - chr1_1:67433157-67433176 None:intergenic 30.0%
TATAGTAACAGCATAAAGCT+TGG - chr1_1:67433266-67433285 None:intergenic 30.0%
! AGCTTTATGCTGTTACTATA+AGG + chr1_1:67433266-67433285 Msa0038150:CDS 30.0%
ATAAGGAATGTTCAGAATGA+TGG + chr1_1:67433283-67433302 Msa0038150:CDS 30.0%
TTGGCAATGAATCCAAAAAA+GGG - chr1_1:67433532-67433551 None:intergenic 30.0%
!! AGTTAACTTGTTTGTCCAAT+TGG + chr1_1:67433927-67433946 Msa0038150:intron 30.0%
! CGAAACTTTTTGTCATTAAG+GGG - chr1_1:67434211-67434230 None:intergenic 30.0%
! CACGAAACTTTTTGTCATTA+AGG - chr1_1:67434213-67434232 None:intergenic 30.0%
ATTCAAATTACAGTGTGTTG+GGG - chr1_1:67434390-67434409 None:intergenic 30.0%
TCCAGCAAACAGTAATTAAT+TGG + chr1_1:67434535-67434554 Msa0038150:intron 30.0%
ACCAATTAATTACTGTTTGC+TGG - chr1_1:67434539-67434558 None:intergenic 30.0%
! ATTCTTGTTTCTTCTTCAGA+TGG + chr1_1:67434979-67434998 Msa0038150:intron 30.0%
! TTCTTGTTTCTTCTTCAGAT+GGG + chr1_1:67434980-67434999 Msa0038150:intron 30.0%
!!! GAATTTTGGGATAGTAGATT+TGG + chr1_1:67435085-67435104 Msa0038150:CDS 30.0%
AATTGTGCATCATGGAAATT+GGG - chr1_1:67435269-67435288 None:intergenic 30.0%
TGTTATCAAAATCAGAGGAT+GGG - chr1_1:67433061-67433080 None:intergenic 30.0%
CATAGTGTTATCAAAATCAG+AGG - chr1_1:67433066-67433085 None:intergenic 30.0%
!!! TGTTACAGACATGTTTTTTG+GGG - chr1_1:67433155-67433174 None:intergenic 30.0%
!!! GATGTTACAGACATGTTTTT+TGG - chr1_1:67433157-67433176 None:intergenic 30.0%
TATAGTAACAGCATAAAGCT+TGG - chr1_1:67433266-67433285 None:intergenic 30.0%
! AGCTTTATGCTGTTACTATA+AGG + chr1_1:67433266-67433285 Msa0038150:CDS 30.0%
ATAAGGAATGTTCAGAATGA+TGG + chr1_1:67433283-67433302 Msa0038150:CDS 30.0%
TTGGCAATGAATCCAAAAAA+GGG - chr1_1:67433532-67433551 None:intergenic 30.0%
!! AGTTAACTTGTTTGTCCAAT+TGG + chr1_1:67433927-67433946 Msa0038150:intron 30.0%
! CGAAACTTTTTGTCATTAAG+GGG - chr1_1:67434211-67434230 None:intergenic 30.0%
! CACGAAACTTTTTGTCATTA+AGG - chr1_1:67434213-67434232 None:intergenic 30.0%
ATTCAAATTACAGTGTGTTG+GGG - chr1_1:67434390-67434409 None:intergenic 30.0%
TCCAGCAAACAGTAATTAAT+TGG + chr1_1:67434535-67434554 Msa0038150:intron 30.0%
ACCAATTAATTACTGTTTGC+TGG - chr1_1:67434539-67434558 None:intergenic 30.0%
! ATTCTTGTTTCTTCTTCAGA+TGG + chr1_1:67434979-67434998 Msa0038150:intron 30.0%
! TTCTTGTTTCTTCTTCAGAT+GGG + chr1_1:67434980-67434999 Msa0038150:intron 30.0%
!!! GAATTTTGGGATAGTAGATT+TGG + chr1_1:67435085-67435104 Msa0038150:CDS 30.0%
AATTGTGCATCATGGAAATT+GGG - chr1_1:67435269-67435288 None:intergenic 30.0%
GTGTTATCAAAATCAGAGGA+TGG - chr1_1:67433062-67433081 None:intergenic 35.0%
!!! TTACAGACATGTTTTTTGGG+GGG - chr1_1:67433153-67433172 None:intergenic 35.0%
!!! GTTACAGACATGTTTTTTGG+GGG - chr1_1:67433154-67433173 None:intergenic 35.0%
!! TTGTTGGGATTTTGATGCAT+GGG - chr1_1:67433186-67433205 None:intergenic 35.0%
AGGAAGATGAATGAGTTGTT+GGG - chr1_1:67433201-67433220 None:intergenic 35.0%
AGATGAAGTTGAACATGAAG+AGG - chr1_1:67433221-67433240 None:intergenic 35.0%
TTAGAAGGTTCTTTCACAGA+AGG - chr1_1:67433331-67433350 None:intergenic 35.0%
AAAGGTTGAGGAAGATTAGA+AGG - chr1_1:67433346-67433365 None:intergenic 35.0%
TCATCTCCAATAACAGAACT+TGG - chr1_1:67433412-67433431 None:intergenic 35.0%
GTTTCAGAGACAAAAAGCTA+AGG + chr1_1:67433453-67433472 Msa0038150:CDS 35.0%
ACAAAAAGCTAAGGAATTGC+AGG + chr1_1:67433462-67433481 Msa0038150:CDS 35.0%
CTTGGCAATGAATCCAAAAA+AGG - chr1_1:67433533-67433552 None:intergenic 35.0%
TCCATTGCTAATCTCATTCT+TGG - chr1_1:67433551-67433570 None:intergenic 35.0%
AGAATGAGATTAGCAATGGA+AGG + chr1_1:67433551-67433570 Msa0038150:CDS 35.0%
!! GAATTGGGGTTGATATAAGT+TGG + chr1_1:67433604-67433623 Msa0038150:intron 35.0%
! TGTTGGTAGAAGAACTAGTT+AGG + chr1_1:67433676-67433695 Msa0038150:intron 35.0%
AATAAGCGAAAAACAGCTCA+AGG - chr1_1:67433785-67433804 None:intergenic 35.0%
TAAAGTTGAACTGTTTCCCT+AGG - chr1_1:67433836-67433855 None:intergenic 35.0%
! TAACTAACTGGTTCTCCAAT+TGG - chr1_1:67433945-67433964 None:intergenic 35.0%
GAGACTCAAAACTAACTAAC+TGG - chr1_1:67433957-67433976 None:intergenic 35.0%
!!! TAGTTAGTTTTGAGTCTCTG+TGG + chr1_1:67433959-67433978 Msa0038150:intron 35.0%
TCCATCACTATCAAAACTAC+AGG - chr1_1:67434141-67434160 None:intergenic 35.0%
!!! TGTAGTTTTGATAGTGATGG+AGG + chr1_1:67434140-67434159 Msa0038150:intron 35.0%
! AACTTTTTGTCATTAAGGGG+AGG - chr1_1:67434208-67434227 None:intergenic 35.0%
CAATCTAGTCCTACATTAGT+TGG - chr1_1:67434268-67434287 None:intergenic 35.0%
AATGTAGGACTAGATTGTGT+TGG + chr1_1:67434271-67434290 Msa0038150:intron 35.0%
! TAGTTCTACGTTGATTAGAG+AGG + chr1_1:67434312-67434331 Msa0038150:intron 35.0%
TCAACAAGATTGCTTCTGTA+TGG - chr1_1:67434442-67434461 None:intergenic 35.0%
TTGAAGGTTTCTACTGTCAT+AGG - chr1_1:67434487-67434506 None:intergenic 35.0%
TATGACAGTAGAAACCTTCA+AGG + chr1_1:67434486-67434505 Msa0038150:intron 35.0%
! CTTAAATTAGTCTGCCTTGA+AGG - chr1_1:67434503-67434522 None:intergenic 35.0%
ATCTGATCAATAAGTACACG+CGG + chr1_1:67434584-67434603 Msa0038150:intron 35.0%
AAATGGATACTAGAGTAACG+TGG + chr1_1:67434679-67434698 Msa0038150:intron 35.0%
!!! TCAAGTGATGTGGGATTTTT+TGG - chr1_1:67434726-67434745 None:intergenic 35.0%
! TTTGGTAAAAGGTGCATTGA+GGG - chr1_1:67434795-67434814 None:intergenic 35.0%
GCTCAAAACTGACATTATCT+CGG + chr1_1:67434842-67434861 Msa0038150:intron 35.0%
!!! CAATGTTTGGTTTTGCTGTT+GGG + chr1_1:67435003-67435022 Msa0038150:CDS 35.0%
! AAGATCCTTCTCTCGAATTT+TGG + chr1_1:67435071-67435090 Msa0038150:CDS 35.0%
! AGATCCTTCTCTCGAATTTT+GGG + chr1_1:67435072-67435091 Msa0038150:CDS 35.0%
GAATTGTGCATCATGGAAAT+TGG - chr1_1:67435270-67435289 None:intergenic 35.0%
AAAGCAAGAATTGTGCATCA+TGG - chr1_1:67435277-67435296 None:intergenic 35.0%
GTGTTATCAAAATCAGAGGA+TGG - chr1_1:67433062-67433081 None:intergenic 35.0%
!!! TTACAGACATGTTTTTTGGG+GGG - chr1_1:67433153-67433172 None:intergenic 35.0%
!!! GTTACAGACATGTTTTTTGG+GGG - chr1_1:67433154-67433173 None:intergenic 35.0%
!! TTGTTGGGATTTTGATGCAT+GGG - chr1_1:67433186-67433205 None:intergenic 35.0%
AGGAAGATGAATGAGTTGTT+GGG - chr1_1:67433201-67433220 None:intergenic 35.0%
AGATGAAGTTGAACATGAAG+AGG - chr1_1:67433221-67433240 None:intergenic 35.0%
TTAGAAGGTTCTTTCACAGA+AGG - chr1_1:67433331-67433350 None:intergenic 35.0%
AAAGGTTGAGGAAGATTAGA+AGG - chr1_1:67433346-67433365 None:intergenic 35.0%
TCATCTCCAATAACAGAACT+TGG - chr1_1:67433412-67433431 None:intergenic 35.0%
GTTTCAGAGACAAAAAGCTA+AGG + chr1_1:67433453-67433472 Msa0038150:CDS 35.0%
ACAAAAAGCTAAGGAATTGC+AGG + chr1_1:67433462-67433481 Msa0038150:CDS 35.0%
CTTGGCAATGAATCCAAAAA+AGG - chr1_1:67433533-67433552 None:intergenic 35.0%
TCCATTGCTAATCTCATTCT+TGG - chr1_1:67433551-67433570 None:intergenic 35.0%
AGAATGAGATTAGCAATGGA+AGG + chr1_1:67433551-67433570 Msa0038150:CDS 35.0%
!! GAATTGGGGTTGATATAAGT+TGG + chr1_1:67433604-67433623 Msa0038150:intron 35.0%
! TGTTGGTAGAAGAACTAGTT+AGG + chr1_1:67433676-67433695 Msa0038150:intron 35.0%
AATAAGCGAAAAACAGCTCA+AGG - chr1_1:67433785-67433804 None:intergenic 35.0%
TAAAGTTGAACTGTTTCCCT+AGG - chr1_1:67433836-67433855 None:intergenic 35.0%
! TAACTAACTGGTTCTCCAAT+TGG - chr1_1:67433945-67433964 None:intergenic 35.0%
GAGACTCAAAACTAACTAAC+TGG - chr1_1:67433957-67433976 None:intergenic 35.0%
!!! TAGTTAGTTTTGAGTCTCTG+TGG + chr1_1:67433959-67433978 Msa0038150:intron 35.0%
TCCATCACTATCAAAACTAC+AGG - chr1_1:67434141-67434160 None:intergenic 35.0%
!!! TGTAGTTTTGATAGTGATGG+AGG + chr1_1:67434140-67434159 Msa0038150:intron 35.0%
! AACTTTTTGTCATTAAGGGG+AGG - chr1_1:67434208-67434227 None:intergenic 35.0%
CAATCTAGTCCTACATTAGT+TGG - chr1_1:67434268-67434287 None:intergenic 35.0%
AATGTAGGACTAGATTGTGT+TGG + chr1_1:67434271-67434290 Msa0038150:intron 35.0%
! TAGTTCTACGTTGATTAGAG+AGG + chr1_1:67434312-67434331 Msa0038150:intron 35.0%
TCAACAAGATTGCTTCTGTA+TGG - chr1_1:67434442-67434461 None:intergenic 35.0%
TTGAAGGTTTCTACTGTCAT+AGG - chr1_1:67434487-67434506 None:intergenic 35.0%
TATGACAGTAGAAACCTTCA+AGG + chr1_1:67434486-67434505 Msa0038150:intron 35.0%
! CTTAAATTAGTCTGCCTTGA+AGG - chr1_1:67434503-67434522 None:intergenic 35.0%
ATCTGATCAATAAGTACACG+CGG + chr1_1:67434584-67434603 Msa0038150:intron 35.0%
AAATGGATACTAGAGTAACG+TGG + chr1_1:67434679-67434698 Msa0038150:intron 35.0%
!!! TCAAGTGATGTGGGATTTTT+TGG - chr1_1:67434726-67434745 None:intergenic 35.0%
! TTTGGTAAAAGGTGCATTGA+GGG - chr1_1:67434795-67434814 None:intergenic 35.0%
GCTCAAAACTGACATTATCT+CGG + chr1_1:67434842-67434861 Msa0038150:intron 35.0%
!!! CAATGTTTGGTTTTGCTGTT+GGG + chr1_1:67435003-67435022 Msa0038150:CDS 35.0%
! AAGATCCTTCTCTCGAATTT+TGG + chr1_1:67435071-67435090 Msa0038150:CDS 35.0%
! AGATCCTTCTCTCGAATTTT+GGG + chr1_1:67435072-67435091 Msa0038150:CDS 35.0%
GAATTGTGCATCATGGAAAT+TGG - chr1_1:67435270-67435289 None:intergenic 35.0%
AAAGCAAGAATTGTGCATCA+TGG - chr1_1:67435277-67435296 None:intergenic 35.0%
!! GTTGTTGGGATTTTGATGCA+TGG - chr1_1:67433187-67433206 None:intergenic 40.0%
GAGGAAGATGAATGAGTTGT+TGG - chr1_1:67433202-67433221 None:intergenic 40.0%
ATAACAGAACTTGGCTTCTG+TGG - chr1_1:67433403-67433422 None:intergenic 40.0%
CAGAAGCCAAGTTCTGTTAT+TGG + chr1_1:67433403-67433422 Msa0038150:CDS 40.0%
GCCAAGAATGAGATTAGCAA+TGG + chr1_1:67433547-67433566 Msa0038150:CDS 40.0%
AATCTGTATCAGTTACGCTG+TGG + chr1_1:67434016-67434035 Msa0038150:intron 40.0%
CTATCAAAACTACAGGCCAA+AGG - chr1_1:67434134-67434153 None:intergenic 40.0%
!!! GCCTGTAGTTTTGATAGTGA+TGG + chr1_1:67434137-67434156 Msa0038150:intron 40.0%
TTTGTCATTAAGGGGAGGAA+GGG - chr1_1:67434203-67434222 None:intergenic 40.0%
! TTTTGTCATTAAGGGGAGGA+AGG - chr1_1:67434204-67434223 None:intergenic 40.0%
GGAGAGTTGGAAGTAACAAA+GGG - chr1_1:67434359-67434378 None:intergenic 40.0%
ACTGTCATAGGAAAGCTCTA+AGG - chr1_1:67434475-67434494 None:intergenic 40.0%
GATACTAGAGTAACGTGGAA+TGG + chr1_1:67434684-67434703 Msa0038150:intron 40.0%
!!! TGTGGGATTTTTTGGTGGAT+CGG - chr1_1:67434718-67434737 None:intergenic 40.0%
!!! AGTGATGTGGGATTTTTTGG+TGG - chr1_1:67434723-67434742 None:intergenic 40.0%
! CTTTGGTAAAAGGTGCATTG+AGG - chr1_1:67434796-67434815 None:intergenic 40.0%
! CTCAATGCACCTTTTACCAA+AGG + chr1_1:67434794-67434813 Msa0038150:intron 40.0%
CGACTTTGTCCTTTGGTAAA+AGG - chr1_1:67434806-67434825 None:intergenic 40.0%
CTGACATTATCTCGGAAAAG+CGG + chr1_1:67434850-67434869 Msa0038150:intron 40.0%
TTCTTCAGATGGGCAATGTT+TGG + chr1_1:67434990-67435009 Msa0038150:intron 40.0%
!!! GCAATGTTTGGTTTTGCTGT+TGG + chr1_1:67435002-67435021 Msa0038150:CDS 40.0%
CTATCCCAAAATTCGAGAGA+AGG - chr1_1:67435079-67435098 None:intergenic 40.0%
TGCATCATGGAAATTGGGAA+AGG - chr1_1:67435264-67435283 None:intergenic 40.0%
!! GTTGTTGGGATTTTGATGCA+TGG - chr1_1:67433187-67433206 None:intergenic 40.0%
GAGGAAGATGAATGAGTTGT+TGG - chr1_1:67433202-67433221 None:intergenic 40.0%
ATAACAGAACTTGGCTTCTG+TGG - chr1_1:67433403-67433422 None:intergenic 40.0%
CAGAAGCCAAGTTCTGTTAT+TGG + chr1_1:67433403-67433422 Msa0038150:CDS 40.0%
GCCAAGAATGAGATTAGCAA+TGG + chr1_1:67433547-67433566 Msa0038150:CDS 40.0%
AATCTGTATCAGTTACGCTG+TGG + chr1_1:67434016-67434035 Msa0038150:intron 40.0%
CTATCAAAACTACAGGCCAA+AGG - chr1_1:67434134-67434153 None:intergenic 40.0%
!!! GCCTGTAGTTTTGATAGTGA+TGG + chr1_1:67434137-67434156 Msa0038150:intron 40.0%
TTTGTCATTAAGGGGAGGAA+GGG - chr1_1:67434203-67434222 None:intergenic 40.0%
! TTTTGTCATTAAGGGGAGGA+AGG - chr1_1:67434204-67434223 None:intergenic 40.0%
GGAGAGTTGGAAGTAACAAA+GGG - chr1_1:67434359-67434378 None:intergenic 40.0%
ACTGTCATAGGAAAGCTCTA+AGG - chr1_1:67434475-67434494 None:intergenic 40.0%
GATACTAGAGTAACGTGGAA+TGG + chr1_1:67434684-67434703 Msa0038150:intron 40.0%
!!! TGTGGGATTTTTTGGTGGAT+CGG - chr1_1:67434718-67434737 None:intergenic 40.0%
!!! AGTGATGTGGGATTTTTTGG+TGG - chr1_1:67434723-67434742 None:intergenic 40.0%
! CTTTGGTAAAAGGTGCATTG+AGG - chr1_1:67434796-67434815 None:intergenic 40.0%
! CTCAATGCACCTTTTACCAA+AGG + chr1_1:67434794-67434813 Msa0038150:intron 40.0%
CGACTTTGTCCTTTGGTAAA+AGG - chr1_1:67434806-67434825 None:intergenic 40.0%
CTGACATTATCTCGGAAAAG+CGG + chr1_1:67434850-67434869 Msa0038150:intron 40.0%
TTCTTCAGATGGGCAATGTT+TGG + chr1_1:67434990-67435009 Msa0038150:intron 40.0%
!!! GCAATGTTTGGTTTTGCTGT+TGG + chr1_1:67435002-67435021 Msa0038150:CDS 40.0%
CTATCCCAAAATTCGAGAGA+AGG - chr1_1:67435079-67435098 None:intergenic 40.0%
TGCATCATGGAAATTGGGAA+AGG - chr1_1:67435264-67435283 None:intergenic 40.0%
AAAATCAGAGGATGGGTGTG+TGG - chr1_1:67433054-67433073 None:intergenic 45.0%
GGTGAAGGTTTCAAAGGTTG+AGG - chr1_1:67433358-67433377 None:intergenic 45.0%
GAAGGAGGTGAAGGTTTCAA+AGG - chr1_1:67433364-67433383 None:intergenic 45.0%
CTTGAACAAGCTGCAGATCA+AGG + chr1_1:67433505-67433524 Msa0038150:CDS 45.0%
!!! GCAGATCAAGGTCCCTTTTT+TGG + chr1_1:67433517-67433536 Msa0038150:CDS 45.0%
CCTAGAGGCTAGAAAGCTTA+TGG - chr1_1:67433809-67433828 None:intergenic 45.0%
! CCATAAGCTTTCTAGCCTCT+AGG + chr1_1:67433806-67433825 Msa0038150:intron 45.0%
!! TCTAGCCTCTAGGATAACCT+AGG + chr1_1:67433816-67433835 Msa0038150:intron 45.0%
!! CTAGCCTCTAGGATAACCTA+GGG + chr1_1:67433817-67433836 Msa0038150:intron 45.0%
GTTTCCCTAGGTTATCCTAG+AGG - chr1_1:67433824-67433843 None:intergenic 45.0%
GGAGCTAAATGTCAGAGTAC+TGG + chr1_1:67434333-67434352 Msa0038150:intron 45.0%
GGGAGAGTTGGAAGTAACAA+AGG - chr1_1:67434360-67434379 None:intergenic 45.0%
CCTCGATTCTCAAGTGATGT+GGG - chr1_1:67434735-67434754 None:intergenic 45.0%
GTTGCTAACCGAGTTTGCAA+CGG + chr1_1:67435025-67435044 Msa0038150:CDS 45.0%
TTGCTAACCGAGTTTGCAAC+GGG + chr1_1:67435026-67435045 Msa0038150:CDS 45.0%
AAAATCAGAGGATGGGTGTG+TGG - chr1_1:67433054-67433073 None:intergenic 45.0%
GGTGAAGGTTTCAAAGGTTG+AGG - chr1_1:67433358-67433377 None:intergenic 45.0%
GAAGGAGGTGAAGGTTTCAA+AGG - chr1_1:67433364-67433383 None:intergenic 45.0%
CTTGAACAAGCTGCAGATCA+AGG + chr1_1:67433505-67433524 Msa0038150:CDS 45.0%
!!! GCAGATCAAGGTCCCTTTTT+TGG + chr1_1:67433517-67433536 Msa0038150:CDS 45.0%
CCTAGAGGCTAGAAAGCTTA+TGG - chr1_1:67433809-67433828 None:intergenic 45.0%
! CCATAAGCTTTCTAGCCTCT+AGG + chr1_1:67433806-67433825 Msa0038150:intron 45.0%
!! TCTAGCCTCTAGGATAACCT+AGG + chr1_1:67433816-67433835 Msa0038150:intron 45.0%
!! CTAGCCTCTAGGATAACCTA+GGG + chr1_1:67433817-67433836 Msa0038150:intron 45.0%
GTTTCCCTAGGTTATCCTAG+AGG - chr1_1:67433824-67433843 None:intergenic 45.0%
GGAGCTAAATGTCAGAGTAC+TGG + chr1_1:67434333-67434352 Msa0038150:intron 45.0%
GGGAGAGTTGGAAGTAACAA+AGG - chr1_1:67434360-67434379 None:intergenic 45.0%
CCTCGATTCTCAAGTGATGT+GGG - chr1_1:67434735-67434754 None:intergenic 45.0%
GTTGCTAACCGAGTTTGCAA+CGG + chr1_1:67435025-67435044 Msa0038150:CDS 45.0%
TTGCTAACCGAGTTTGCAAC+GGG + chr1_1:67435026-67435045 Msa0038150:CDS 45.0%
!! GGGGGGATTGATGATGATAC+TGG - chr1_1:67433136-67433155 None:intergenic 50.0%
GAACTTGGCTTCTGTGGTTG+TGG - chr1_1:67433397-67433416 None:intergenic 50.0%
CCCACATCACTTGAGAATCG+AGG + chr1_1:67434732-67434751 Msa0038150:intron 50.0%
GCCTCGATTCTCAAGTGATG+TGG - chr1_1:67434736-67434755 None:intergenic 50.0%
GCACTCACGACTTTGTCCTT+TGG - chr1_1:67434813-67434832 None:intergenic 50.0%
!! AAGTCGTGAGTGCTGACACA+AGG + chr1_1:67434820-67434839 Msa0038150:intron 50.0%
!! GGGGGGATTGATGATGATAC+TGG - chr1_1:67433136-67433155 None:intergenic 50.0%
GAACTTGGCTTCTGTGGTTG+TGG - chr1_1:67433397-67433416 None:intergenic 50.0%
CCCACATCACTTGAGAATCG+AGG + chr1_1:67434732-67434751 Msa0038150:intron 50.0%
GCCTCGATTCTCAAGTGATG+TGG - chr1_1:67434736-67434755 None:intergenic 50.0%
GCACTCACGACTTTGTCCTT+TGG - chr1_1:67434813-67434832 None:intergenic 50.0%
!! AAGTCGTGAGTGCTGACACA+AGG + chr1_1:67434820-67434839 Msa0038150:intron 50.0%
AGAGGATGGGTGTGTGGACA+AGG - chr1_1:67433048-67433067 None:intergenic 55.0%
TGGTCCTCTCAGAAGACCAG+CGG + chr1_1:67433303-67433322 Msa0038150:CDS 55.0%
TCTTTCACAGAAGGAGCCGC+TGG - chr1_1:67433322-67433341 None:intergenic 55.0%
CTTGGCTTCTGTGGTTGTGG+AGG - chr1_1:67433394-67433413 None:intergenic 55.0%
CAGTGTGTTGGGGAGTCTGA+GGG - chr1_1:67434380-67434399 None:intergenic 55.0%
ACAGTGTGTTGGGGAGTCTG+AGG - chr1_1:67434381-67434400 None:intergenic 55.0%
GTCTGAGCCCGTTGCAAACT+CGG - chr1_1:67435036-67435055 None:intergenic 55.0%
AGAGGATGGGTGTGTGGACA+AGG - chr1_1:67433048-67433067 None:intergenic 55.0%
TGGTCCTCTCAGAAGACCAG+CGG + chr1_1:67433303-67433322 Msa0038150:CDS 55.0%
TCTTTCACAGAAGGAGCCGC+TGG - chr1_1:67433322-67433341 None:intergenic 55.0%
CTTGGCTTCTGTGGTTGTGG+AGG - chr1_1:67433394-67433413 None:intergenic 55.0%
CAGTGTGTTGGGGAGTCTGA+GGG - chr1_1:67434380-67434399 None:intergenic 55.0%
ACAGTGTGTTGGGGAGTCTG+AGG - chr1_1:67434381-67434400 None:intergenic 55.0%
GTCTGAGCCCGTTGCAAACT+CGG - chr1_1:67435036-67435055 None:intergenic 55.0%
GGAGGCTGAGAAGGAGGTGA+AGG - chr1_1:67433373-67433392 None:intergenic 60.0%
TGTGGAGGAGGCTGAGAAGG+AGG - chr1_1:67433379-67433398 None:intergenic 60.0%
GGTTGTGGAGGAGGCTGAGA+AGG - chr1_1:67433382-67433401 None:intergenic 60.0%
GGCTTCTGTGGTTGTGGAGG+AGG - chr1_1:67433391-67433410 None:intergenic 60.0%
TGGGGAGTCTGAGGGAGAGT+TGG - chr1_1:67434372-67434391 None:intergenic 60.0%
GGAGGCTGAGAAGGAGGTGA+AGG - chr1_1:67433373-67433392 None:intergenic 60.0%
TGTGGAGGAGGCTGAGAAGG+AGG - chr1_1:67433379-67433398 None:intergenic 60.0%
GGTTGTGGAGGAGGCTGAGA+AGG - chr1_1:67433382-67433401 None:intergenic 60.0%
GGCTTCTGTGGTTGTGGAGG+AGG - chr1_1:67433391-67433410 None:intergenic 60.0%
TGGGGAGTCTGAGGGAGAGT+TGG - chr1_1:67434372-67434391 None:intergenic 60.0%
!! GGAGCCGCTGGTCTTCTGAG+AGG - chr1_1:67433310-67433329 None:intergenic 65.0%
!! GGAGCCGCTGGTCTTCTGAG+AGG - chr1_1:67433310-67433329 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67433037 67435314 67433037 ID=Msa0038150;Name=Msa0038150
chr1_1 mRNA 67433037 67435314 67433037 ID=Msa0038150-mRNA-1;Parent=Msa0038150;Name=Msa0038150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=126|1|1|1|1|1|2|202|174
chr1_1 exon 67433037 67433572 67433037 ID=Msa0038150-mRNA-1:exon:21919;Parent=Msa0038150-mRNA-1
chr1_1 exon 67434998 67435314 67434998 ID=Msa0038150-mRNA-1:exon:21920;Parent=Msa0038150-mRNA-1
chr1_1 five_prime_UTR 67433037 67433162 67433037 ID=Msa0038150-mRNA-1:five_prime_utr;Parent=Msa0038150-mRNA-1
chr1_1 CDS 67433163 67433572 67433163 ID=Msa0038150-mRNA-1:cds;Parent=Msa0038150-mRNA-1
chr1_1 CDS 67434998 67435112 67434998 ID=Msa0038150-mRNA-1:cds;Parent=Msa0038150-mRNA-1
chr1_1 three_prime_UTR 67435113 67435314 67435113 ID=Msa0038150-mRNA-1:three_prime_utr;Parent=Msa0038150-mRNA-1
Gene Sequence

>Msa0038150

ATGTCTGTAACATCTTCAATCCCATGCATCAAAATCCCAACAACTCATTCATCTTCCTCTTCATGTTCAACTTCATCTTATTCTTTTAGATTCTCTTCTTCCAAGCTTTATGCTGTTACTATAAGGAATGTTCAGAATGATGGTCCTCTCAGAAGACCAGCGGCTCCTTCTGTGAAAGAACCTTCTAATCTTCCTCAACCTTTGAAACCTTCACCTCCTTCTCAGCCTCCTCCACAACCACAGAAGCCAAGTTCTGTTATTGGAGATGATAAAAGCGTTGTTTCATTAGAGTTTCAGAGACAAAAAGCTAAGGAATTGCAGGAATATTTCAAAAAGAAGAAGCTTGAACAAGCTGCAGATCAAGGTCCCTTTTTTGGATTCATTGCCAAGAATGAGATTAGCAATGGAAGATGGGCAATGTTTGGTTTTGCTGTTGGGTTGCTAACCGAGTTTGCAACGGGCTCAGACTTTGTTGATCAAGTGAAGATCCTTCTCTCGAATTTTGGGATAGTAGATTTGGATTGA

Protein sequence

>Msa0038150

MSVTSSIPCIKIPTTHSSSSSCSTSSYSFRFSSSKLYAVTIRNVQNDGPLRRPAAPSVKEPSNLPQPLKPSPPSQPPPQPQKPSSVIGDDKSVVSLEFQRQKAKELQEYFKKKKLEQAADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEFATGSDFVDQVKILLSNFGIVDLD*