AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0238950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238950 MtrunA17_Chr2g0289341 99.685 317 1 0 1 317 1 317 0.0 654
Msa0238950 MtrunA17_Chr3g0121141 78.233 317 65 2 1 317 1 313 0.0 525
Msa0238950 MtrunA17_Chr5g0439011 73.354 319 81 2 1 317 2 318 0.0 501
Msa0238950 MtrunA17_Chr3g0125201 50.814 307 137 4 5 302 4 305 2.64e-106 312
Msa0238950 MtrunA17_Chr6g0488511 48.515 303 143 5 4 302 3 296 1.80e-99 295
Msa0238950 MtrunA17_Chr4g0075431 82.822 163 27 1 1 163 1 162 4.21e-87 259
Msa0238950 MtrunA17_Chr4g0075471 88.406 138 15 1 154 290 24 161 5.13e-87 258
Msa0238950 MtrunA17_Chr4g0006371 36.013 311 187 5 3 303 61 369 2.66e-68 217
Msa0238950 MtrunA17_Chr7g0242551 36.774 310 184 5 3 302 53 360 1.93e-67 215
Msa0238950 MtrunA17_Chr3g0113641 36.452 310 184 6 3 302 49 355 4.11e-67 214
Msa0238950 MtrunA17_Chr5g0437181 35.897 312 187 6 1 302 46 354 1.50e-66 213
Msa0238950 MtrunA17_Chr3g0109041 37.667 300 166 10 4 287 42 336 1.43e-60 197
Msa0238950 MtrunA17_Chr8g0375671 34.106 302 185 6 4 295 52 349 3.39e-60 196
Msa0238950 MtrunA17_Chr8g0375571 33.559 295 171 6 5 283 46 331 3.82e-60 196
Msa0238950 MtrunA17_Chr3g0128001 34.932 292 172 7 1 283 35 317 1.78e-59 194
Msa0238950 MtrunA17_Chr8g0375601 33.876 307 184 8 1 295 45 344 3.48e-59 194
Msa0238950 MtrunA17_Chr8g0345831 34.364 291 175 7 2 283 40 323 3.84e-54 180
Msa0238950 MtrunA17_Chr1g0162191 33.893 298 182 7 1 290 44 334 1.41e-53 179
Msa0238950 MtrunA17_Chr2g0314381 32.781 302 189 7 3 295 76 372 3.29e-53 179
Msa0238950 MtrunA17_Chr5g0423191 31.788 302 194 5 1 295 44 340 4.34e-53 177
Msa0238950 MtrunA17_Chr4g0064781 34.926 272 165 4 4 268 50 316 4.38e-53 177
Msa0238950 MtrunA17_Chr3g0145171 32.566 304 190 8 3 297 51 348 1.20e-52 176
Msa0238950 MtrunA17_Chr5g0421011 30.464 302 198 5 1 295 44 340 1.82e-52 176
Msa0238950 MtrunA17_Chr8g0365241 30.435 299 195 5 5 295 58 351 3.31e-52 175
Msa0238950 MtrunA17_Chr5g0420951 30.363 303 196 6 2 295 51 347 5.76e-52 175
Msa0238950 MtrunA17_Chr5g0423201 31.023 303 196 5 1 295 44 341 1.39e-51 174
Msa0238950 MtrunA17_Chr7g0220001 33.758 314 183 10 1 304 38 336 3.85e-51 172
Msa0238950 MtrunA17_Chr5g0420981 30.000 300 195 6 5 295 54 347 3.85e-51 172
Msa0238950 MtrunA17_Chr5g0421041 31.208 298 193 5 5 295 46 338 4.34e-51 172
Msa0238950 MtrunA17_Chr5g0426891 33.788 293 182 8 2 286 37 325 4.66e-51 172
Msa0238950 MtrunA17_Chr2g0296371 33.333 321 193 8 3 309 49 362 5.00e-51 172
Msa0238950 MtrunA17_Chr2g0314401 32.441 299 190 5 5 295 52 346 5.95e-51 172
Msa0238950 MtrunA17_Chr6g0455481 32.907 313 188 8 2 305 40 339 5.68e-50 169
Msa0238950 MtrunA17_Chr7g0220011 32.660 297 180 9 2 288 37 323 1.51e-49 167
Msa0238950 MtrunA17_Chr5g0412681 33.220 295 175 9 2 285 31 314 4.16e-49 167
Msa0238950 MtrunA17_Chr7g0239821 30.795 302 189 6 5 295 65 357 5.37e-49 167
Msa0238950 MtrunA17_Chr5g0423251 30.464 302 198 5 1 295 44 340 1.25e-48 166
Msa0238950 MtrunA17_Chr8g0370711 31.457 302 192 7 5 297 53 348 1.36e-48 166
Msa0238950 MtrunA17_Chr1g0184101 34.122 296 177 7 3 288 37 324 1.58e-48 165
Msa0238950 MtrunA17_Chr5g0420941 29.703 303 199 6 1 295 42 338 2.39e-48 165
Msa0238950 MtrunA17_Chr2g0314391 31.333 300 194 6 4 295 70 365 4.20e-48 165
Msa0238950 MtrunA17_Chr5g0423221 29.195 298 200 5 5 295 72 365 5.42e-48 165
Msa0238950 MtrunA17_Chr2g0311761 34.532 278 162 6 5 269 69 339 6.84e-48 164
Msa0238950 MtrunA17_Chr1g0184161 33.784 296 176 9 5 289 39 325 8.85e-48 163
Msa0238950 MtrunA17_Chr7g0239111 31.104 299 194 5 4 295 55 348 1.18e-47 164
Msa0238950 MtrunA17_Chr7g0239101 31.410 312 196 6 4 305 55 358 1.28e-47 163
Msa0238950 MtrunA17_Chr8g0336751 32.680 306 184 8 5 297 95 391 3.69e-47 163
Msa0238950 MtrunA17_Chr8g0375701 30.492 305 193 6 1 295 52 347 3.96e-47 162
Msa0238950 MtrunA17_Chr8g0370721 33.003 303 186 8 5 297 53 348 4.34e-47 162
Msa0238950 MtrunA17_Chr8g0375681 32.210 267 170 6 36 295 15 277 5.02e-47 160
Msa0238950 MtrunA17_Chr2g0311681 30.794 315 180 10 3 294 62 361 1.10e-46 161
Msa0238950 MtrunA17_Chr2g0311831 33.904 292 173 8 5 284 69 352 1.39e-46 161
Msa0238950 MtrunA17_Chr1g0167911 34.084 311 178 9 5 300 55 353 4.87e-46 159
Msa0238950 MtrunA17_Chr5g0420901 28.713 303 202 6 1 295 43 339 7.47e-46 159
Msa0238950 MtrunA17_Chr2g0311921 31.864 295 182 8 5 287 55 342 7.87e-46 159
Msa0238950 MtrunA17_Chr1g0184111 30.719 306 185 8 2 292 35 328 8.68e-46 158
Msa0238950 MtrunA17_Chr1g0184121 33.455 275 165 7 5 268 38 305 1.17e-45 158
Msa0238950 MtrunA17_Chr4g0050031 34.471 293 177 6 4 286 62 349 1.28e-45 158
Msa0238950 MtrunA17_Chr1g0187831 32.441 299 179 11 3 287 69 358 1.31e-45 159
Msa0238950 MtrunA17_Chr5g0412671 32.886 298 182 9 1 285 35 327 1.45e-45 157
Msa0238950 MtrunA17_Chr5g0421101 28.146 302 205 5 1 295 44 340 1.50e-45 158
Msa0238950 MtrunA17_Chr5g0421091 28.763 299 202 5 4 295 45 339 1.72e-45 157
Msa0238950 MtrunA17_Chr7g0239121 30.363 303 192 7 4 295 51 345 2.50e-45 157
Msa0238950 MtrunA17_Chr8g0348081 31.208 298 182 8 4 287 60 348 2.79e-45 157
Msa0238950 MtrunA17_Chr2g0311741 33.113 302 170 9 3 287 26 312 4.33e-45 156
Msa0238950 MtrunA17_Chr5g0412651 30.945 307 184 8 1 289 35 331 8.67e-45 155
Msa0238950 MtrunA17_Chr8g0371931 36.437 247 144 6 24 261 61 303 8.82e-45 156
Msa0238950 MtrunA17_Chr2g0311691 30.159 315 182 10 3 294 62 361 2.52e-44 155
Msa0238950 MtrunA17_Chr5g0398291 31.469 286 182 5 5 277 48 332 2.58e-44 154
Msa0238950 MtrunA17_Chr5g0405411 32.770 296 182 8 4 288 39 328 2.64e-44 154
Msa0238950 MtrunA17_Chr8g0371921 33.457 269 164 7 4 261 39 303 2.75e-44 155
Msa0238950 MtrunA17_Chr2g0311701 30.744 309 176 10 5 292 70 361 4.61e-44 154
Msa0238950 MtrunA17_Chr4g0066121 33.214 280 166 8 4 269 60 332 1.76e-43 152
Msa0238950 MtrunA17_Chr1g0184151 32.107 299 181 9 3 289 37 325 2.09e-43 152
Msa0238950 MtrunA17_Chr2g0311711 32.166 314 176 12 3 294 66 364 2.13e-43 152
Msa0238950 MtrunA17_Chr1g0179801 32.384 281 163 7 4 266 66 337 4.23e-43 152
Msa0238950 MtrunA17_Chr1g0162361 32.432 296 173 8 1 276 24 312 4.43e-43 151
Msa0238950 MtrunA17_Chr2g0311861 35.517 290 159 12 4 287 64 331 4.45e-43 151
Msa0238950 MtrunA17_Chr8g0336851 31.183 279 170 7 5 269 61 331 5.03e-43 151
Msa0238950 MtrunA17_Chr8g0336781 30.872 298 184 8 4 287 95 384 5.98e-43 152
Msa0238950 MtrunA17_Chr8g0336861 30.844 308 183 10 4 295 60 353 6.48e-43 151
Msa0238950 MtrunA17_Chr7g0265221 29.897 291 171 5 3 269 66 347 2.91e-42 150
Msa0238950 MtrunA17_Chr4g0045441 30.137 292 180 7 5 276 33 320 3.79e-42 149
Msa0238950 MtrunA17_Chr1g0162351 28.994 338 198 9 2 311 67 390 4.34e-42 150
Msa0238950 MtrunA17_Chr1g0187811 33.101 287 166 11 5 275 189 465 8.61e-42 151
Msa0238950 MtrunA17_Chr8g0336761 32.130 277 170 7 5 269 61 331 1.19e-41 148
Msa0238950 MtrunA17_Chr4g0045471 31.353 303 175 8 2 276 24 321 1.33e-41 147
Msa0238950 MtrunA17_Chr7g0239071 32.342 269 171 4 34 295 29 293 1.84e-41 146
Msa0238950 MtrunA17_Chr5g0424201 34.021 291 173 10 5 284 45 327 1.90e-41 147
Msa0238950 MtrunA17_Chr2g0319491 31.010 287 175 8 5 283 34 305 2.04e-41 146
Msa0238950 MtrunA17_Chr3g0126741 31.864 295 182 8 3 286 58 344 3.03e-41 147
Msa0238950 MtrunA17_Chr1g0187821 32.867 286 166 12 5 275 68 342 3.61e-41 147
Msa0238950 MtrunA17_Chr3g0145181 29.242 277 177 7 6 268 51 322 4.64e-41 146
Msa0238950 MtrunA17_Chr8g0354261 32.168 286 158 9 3 266 67 338 6.26e-41 146
Msa0238950 MtrunA17_Chr3g0087031 30.847 295 192 8 5 292 61 350 6.85e-41 145
Msa0238950 MtrunA17_Chr1g0162321 28.107 338 201 8 2 311 67 390 8.87e-41 146
Msa0238950 MtrunA17_Chr2g0332191 29.932 294 180 9 5 284 53 334 4.10e-40 144
Msa0238950 MtrunA17_Chr5g0420721 33.032 221 142 3 77 295 26 242 4.29e-40 141
Msa0238950 MtrunA17_Chr7g0266651 32.558 258 160 6 3 252 58 309 1.95e-39 142
Msa0238950 MtrunA17_Chr1g0167951 32.423 293 170 9 5 281 54 334 1.96e-39 142
Msa0238950 MtrunA17_Chr5g0423211 26.557 305 208 6 1 295 44 342 3.07e-39 141
Msa0238950 MtrunA17_Chr3g0102041 31.752 274 172 6 24 288 61 328 3.24e-39 141
Msa0238950 MtrunA17_Chr5g0424211 32.734 278 167 9 5 269 43 313 3.93e-39 140
Msa0238950 MtrunA17_Chr4g0045451 30.000 300 176 8 5 276 27 320 4.34e-39 140
Msa0238950 MtrunA17_Chr1g0167961 32.509 283 172 8 3 273 68 343 5.18e-39 141
Msa0238950 MtrunA17_Chr8g0354241 33.094 278 166 8 3 266 67 338 7.00e-39 141
Msa0238950 MtrunA17_Chr7g0235951 30.565 301 184 10 3 287 66 357 7.08e-39 140
Msa0238950 MtrunA17_Chr3g0105281 33.333 249 146 6 24 259 47 288 9.41e-39 139
Msa0238950 MtrunA17_Chr8g0364471 29.000 300 188 8 5 288 68 358 2.01e-38 139
Msa0238950 MtrunA17_Chr3g0145201 28.929 280 180 7 3 268 683 957 6.24e-38 143
Msa0238950 MtrunA17_Chr7g0250511 30.612 294 185 9 4 286 49 334 7.16e-38 137
Msa0238950 MtrunA17_Chr8g0336631 31.148 305 172 11 5 287 61 349 9.88e-38 137
Msa0238950 MtrunA17_Chr4g0045411 29.123 285 177 6 2 265 28 308 1.05e-37 137
Msa0238950 MtrunA17_Chr7g0232161 32.218 239 151 4 4 235 60 294 1.63e-37 136
Msa0238950 MtrunA17_Chr7g0247991 30.820 305 178 11 3 287 66 357 4.14e-37 136
Msa0238950 MtrunA17_Chr2g0311631 29.126 309 196 8 3 296 54 354 5.07e-37 135
Msa0238950 MtrunA17_Chr1g0161041 29.430 316 173 10 5 295 97 387 6.67e-37 136
Msa0238950 MtrunA17_Chr8g0335411 31.169 308 189 12 3 295 66 365 7.26e-37 135
Msa0238950 MtrunA17_Chr7g0225881 30.303 297 183 12 5 287 68 354 1.29e-36 135
Msa0238950 MtrunA17_Chr3g0114861 30.576 278 174 6 24 286 56 329 1.47e-36 134
Msa0238950 MtrunA17_Chr4g0066991 31.507 292 169 9 5 287 68 337 1.62e-36 134
Msa0238950 MtrunA17_Chr7g0239091 26.621 293 207 5 3 295 159 443 1.70e-36 136
Msa0238950 MtrunA17_Chr3g0125421 29.568 301 186 11 5 286 37 330 2.09e-36 134
Msa0238950 MtrunA17_Chr1g0167931 31.159 276 146 7 3 273 53 289 3.35e-36 132
Msa0238950 MtrunA17_Chr8g0384481 28.276 290 187 10 4 278 59 342 4.90e-36 133
Msa0238950 MtrunA17_Chr4g0055591 28.374 289 174 9 4 275 61 333 1.43e-35 132
Msa0238950 MtrunA17_Chr3g0092531 29.927 274 180 5 20 288 26 292 1.90e-35 130
Msa0238950 MtrunA17_Chr6g0474391 29.252 294 184 8 5 280 65 352 3.60e-35 131
Msa0238950 MtrunA17_Chr8g0351101 26.875 320 208 10 5 306 55 366 3.94e-35 130
Msa0238950 MtrunA17_Chr3g0130391 27.304 293 191 8 5 280 67 354 5.68e-35 130
Msa0238950 MtrunA17_Chr1g0161081 29.073 313 180 11 4 295 73 364 4.50e-34 128
Msa0238950 MtrunA17_Chr6g0472861 29.524 315 192 14 3 299 69 371 8.99e-34 127
Msa0238950 MtrunA17_Chr2g0313111 30.068 296 189 9 5 292 29 314 1.12e-33 126
Msa0238950 MtrunA17_Chr4g0045431 27.331 311 191 10 2 284 24 327 1.92e-33 125
Msa0238950 MtrunA17_Chr8g0384461 27.000 300 197 10 3 286 46 339 2.08e-33 126
Msa0238950 MtrunA17_Chr4g0068891 29.667 300 191 7 4 292 20 310 3.39e-33 124
Msa0238950 MtrunA17_Chr7g0236011 31.023 303 176 11 5 287 68 357 4.07e-33 125
Msa0238950 MtrunA17_Chr1g0204181 26.667 315 195 9 5 298 60 359 4.45e-33 125
Msa0238950 MtrunA17_Chr4g0064771 36.994 173 102 2 106 278 21 186 5.78e-33 121
Msa0238950 MtrunA17_Chr1g0148771 29.588 267 168 8 5 262 64 319 6.16e-33 124
Msa0238950 MtrunA17_Chr2g0314371 29.588 267 147 7 5 238 53 311 7.92e-33 124
Msa0238950 MtrunA17_Chr1g0161111 29.703 303 175 9 5 288 133 416 8.24e-33 125
Msa0238950 MtrunA17_Chr1g0184241 29.431 299 182 8 3 287 68 351 1.07e-32 124
Msa0238950 MtrunA17_Chr1g0191201 25.926 324 217 11 5 311 54 371 1.23e-32 124
Msa0238950 MtrunA17_Chr2g0285931 28.904 301 188 10 1 285 25 315 1.63e-32 123
Msa0238950 MtrunA17_Chr3g0114871 34.979 243 139 9 5 238 43 275 2.52e-32 121
Msa0238950 MtrunA17_Chr8g0358941 29.293 297 185 9 5 285 28 315 3.76e-32 122
Msa0238950 MtrunA17_Chr7g0235981 39.205 176 97 4 85 258 110 277 5.25e-32 121
Msa0238950 MtrunA17_Chr5g0394071 36.994 173 96 4 114 285 5 165 2.39e-31 116
Msa0238950 MtrunA17_Chr3g0126761 35.057 174 109 3 111 284 44 213 4.06e-31 117
Msa0238950 MtrunA17_Chr7g0265351 27.451 306 199 9 2 296 37 330 2.96e-30 117
Msa0238950 MtrunA17_Chr4g0011311 29.661 236 142 7 1 223 64 288 5.54e-30 115
Msa0238950 MtrunA17_Chr4g0045461 29.779 272 168 6 24 276 52 319 5.05e-29 114
Msa0238950 MtrunA17_Chr3g0093741 27.273 319 183 12 2 296 54 347 6.79e-29 114
Msa0238950 MtrunA17_Chr5g0420881 35.556 135 86 1 162 296 4 137 1.04e-28 108
Msa0238950 MtrunA17_Chr3g0093751 28.852 305 196 10 2 296 54 347 1.33e-28 113
Msa0238950 MtrunA17_Chr3g0093761 27.213 305 200 10 2 296 54 346 4.96e-28 111
Msa0238950 MtrunA17_Chr1g0194321 27.742 310 196 10 4 292 20 322 7.06e-28 110
Msa0238950 MtrunA17_Chr6g0486831 28.571 315 180 10 4 284 18 321 3.35e-27 108
Msa0238950 MtrunA17_Chr7g0233661 42.748 131 71 3 158 286 20 148 6.37e-27 103
Msa0238950 MtrunA17_Chr8g0336801 38.462 130 75 3 162 288 14 141 1.01e-26 103
Msa0238950 MtrunA17_Chr8g0389941 28.896 308 179 12 6 284 36 332 4.19e-26 106
Msa0238950 MtrunA17_Chr8g0348951 26.214 309 186 11 3 286 4 295 6.05e-26 105
Msa0238950 MtrunA17_Chr1g0170631 32.768 177 109 5 111 284 3 172 7.76e-26 102
Msa0238950 MtrunA17_Chr4g0052251 26.909 275 184 6 23 283 42 313 1.62e-25 104
Msa0238950 MtrunA17_Chr7g0247741 28.333 300 181 13 5 286 12 295 6.46e-25 102
Msa0238950 MtrunA17_Chr4g0055911 27.987 318 192 10 3 296 8 312 7.14e-25 102
Msa0238950 MtrunA17_Chr1g0158011 35.204 196 113 7 97 289 63 247 1.18e-24 100
Msa0238950 MtrunA17_Chr4g0037611 37.580 157 86 5 128 283 8 153 1.49e-23 95.5
Msa0238950 MtrunA17_Chr4g0053251 27.843 255 164 7 27 264 41 292 1.98e-23 98.2
Msa0238950 MtrunA17_Chr8g0336871 38.000 150 80 4 123 269 2 141 5.17e-23 93.6
Msa0238950 MtrunA17_Chr8g0362741 29.902 204 118 7 32 223 83 273 7.85e-23 95.9
Msa0238950 MtrunA17_Chr5g0407781 24.834 302 206 9 2 296 3 290 1.16e-22 95.9
Msa0238950 MtrunA17_Chr2g0293931 29.787 188 124 4 112 292 8 194 6.93e-22 91.7
Msa0238950 MtrunA17_Chr2g0319521 33.913 115 72 2 109 223 14 124 1.68e-21 88.6
Msa0238950 MtrunA17_Chr4g0055871 26.715 277 170 11 3 259 8 271 2.68e-21 92.4
Msa0238950 MtrunA17_Chr4g0004071 25.676 296 204 7 2 287 7 296 5.95e-21 91.3
Msa0238950 MtrunA17_Chr3g0092581 28.571 168 116 3 121 288 1 164 1.52e-20 87.4
Msa0238950 MtrunA17_Chr4g0004061 25.540 278 191 7 4 270 9 281 2.91e-19 86.7
Msa0238950 MtrunA17_Chr8g0364171 35.398 113 69 2 111 223 18 126 4.41e-19 82.4
Msa0238950 MtrunA17_Chr1g0158031 34.868 152 89 6 121 268 1 146 4.35e-18 80.5
Msa0238950 MtrunA17_Chr8g0375581 46.774 62 33 0 158 219 24 85 5.93e-18 77.4
Msa0238950 MtrunA17_Chr1g0158021 28.251 223 143 10 2 215 47 261 2.61e-17 80.1
Msa0238950 MtrunA17_Chr4g0009561 28.495 186 128 4 110 293 126 308 1.80e-16 78.6
Msa0238950 MtrunA17_Chr3g0138351 27.174 184 129 4 110 291 125 305 3.89e-16 77.8
Msa0238950 MtrunA17_Chr1g0167921 32.192 146 85 4 87 222 15 156 5.00e-16 74.7
Msa0238950 MtrunA17_Chr7g0219991 34.545 110 68 1 112 221 249 354 1.19e-14 73.6
Msa0238950 MtrunA17_Chr2g0311611 46.377 69 29 3 162 223 4 71 1.78e-14 67.4
Msa0238950 MtrunA17_Chr8g0336831 25.926 189 123 5 4 181 60 242 3.55e-13 68.2
Msa0238950 MtrunA17_Chr8g0375661 34.314 102 59 2 4 97 52 153 3.12e-12 63.9
Msa0238950 MtrunA17_Chr4g0009541 25.683 183 131 4 104 284 117 296 1.37e-11 64.3
Msa0238950 MtrunA17_Chr8g0375641 34.653 101 58 2 5 97 53 153 1.76e-11 62.0
Msa0238950 MtrunA17_Chr1g0148781 27.551 196 138 4 110 303 129 322 2.73e-11 63.5
Msa0238950 MtrunA17_Chr7g0256741 22.403 308 222 8 5 301 11 312 8.17e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238950 AT1G05010.1 73.602 322 79 3 1 316 1 322 0.0 502
Msa0238950 AT1G12010.1 70.064 314 91 1 4 317 7 317 2.11e-173 483
Msa0238950 AT1G62380.1 69.108 314 94 1 4 317 7 317 2.35e-172 481
Msa0238950 AT2G19590.1 49.338 302 141 4 5 304 12 303 3.86e-106 312
Msa0238950 AT1G77330.1 50.974 308 134 6 5 302 4 304 4.82e-104 307
Msa0238950 AT2G19590.2 49.817 273 125 4 34 304 26 288 5.67e-94 281
Msa0238950 AT5G05600.1 36.519 293 170 6 3 283 61 349 7.12e-63 204
Msa0238950 AT5G24530.1 34.667 300 177 7 1 289 35 326 1.40e-61 199
Msa0238950 AT2G38240.1 34.828 290 179 4 4 286 48 334 1.74e-61 199
Msa0238950 AT3G55970.1 34.014 294 182 5 4 286 52 344 7.90e-59 193
Msa0238950 AT4G16330.2 36.149 296 166 8 3 285 66 351 1.28e-57 190
Msa0238950 AT3G11180.2 35.052 291 173 6 3 283 94 378 2.17e-57 190
Msa0238950 AT3G11180.1 35.052 291 173 6 3 283 94 378 2.24e-57 190
Msa0238950 AT4G10500.1 33.564 289 181 5 2 283 42 326 2.30e-57 189
Msa0238950 AT4G10490.1 34.783 299 183 7 2 292 40 334 6.10e-56 185
Msa0238950 AT1G78550.1 32.222 270 172 4 5 266 54 320 1.59e-49 169
Msa0238950 AT1G17020.1 32.246 276 178 4 5 272 54 328 4.86e-49 167
Msa0238950 AT1G17010.1 31.597 288 173 5 1 273 51 329 5.28e-49 167
Msa0238950 AT5G08640.2 34.247 292 171 9 4 283 43 325 1.10e-48 166
Msa0238950 AT5G08640.1 34.247 292 171 9 4 283 43 325 1.10e-48 166
Msa0238950 AT5G20400.1 30.159 315 196 7 3 303 44 348 3.79e-48 165
Msa0238950 AT4G21200.1 36.330 267 153 8 5 263 43 300 1.93e-47 162
Msa0238950 AT5G43450.1 32.673 303 182 10 5 295 62 354 2.14e-47 163
Msa0238950 AT4G25310.1 35.081 248 149 4 27 267 76 318 6.72e-47 162
Msa0238950 AT3G21420.1 32.343 303 191 7 5 296 56 355 1.43e-46 161
Msa0238950 AT1G06620.1 33.115 305 182 8 3 294 61 356 2.00e-46 160
Msa0238950 AT4G16330.1 41.176 204 114 4 84 285 46 245 2.75e-46 157
Msa0238950 AT4G25300.1 30.576 278 183 4 3 272 51 326 2.88e-46 160
Msa0238950 AT3G51240.1 33.333 315 186 9 2 298 36 344 3.43e-46 160
Msa0238950 AT1G49390.1 32.727 275 174 5 3 268 44 316 2.21e-45 157
Msa0238950 AT5G05600.2 35.193 233 136 5 3 223 61 290 9.01e-45 154
Msa0238950 AT5G59530.1 34.050 279 164 7 5 269 59 331 2.60e-44 155
Msa0238950 AT3G55970.2 33.621 232 143 4 3 223 51 282 7.45e-44 152
Msa0238950 AT3G19010.1 33.657 309 176 8 2 289 26 326 8.21e-44 154
Msa0238950 AT3G19010.4 33.657 309 176 8 2 289 26 326 8.21e-44 154
Msa0238950 AT5G43440.1 32.895 304 184 10 5 296 63 358 1.36e-43 153
Msa0238950 AT1G15550.1 30.034 293 188 7 2 285 55 339 1.60e-43 153
Msa0238950 AT5G20550.1 30.645 310 190 8 3 297 44 343 3.83e-43 152
Msa0238950 AT5G63595.1 33.818 275 149 9 2 266 23 274 4.01e-43 150
Msa0238950 AT5G54000.2 31.387 274 173 6 6 268 48 317 8.18e-43 151
Msa0238950 AT1G03410.2 33.333 285 169 8 3 273 56 333 9.40e-43 151
Msa0238950 AT1G03410.1 33.333 285 169 8 3 273 93 370 2.30e-42 151
Msa0238950 AT5G59540.1 32.550 298 179 10 5 288 62 351 1.33e-41 148
Msa0238950 AT2G30830.1 33.813 278 164 9 4 268 54 324 1.74e-41 147
Msa0238950 AT1G49390.2 33.891 239 149 4 37 268 1 237 1.81e-41 145
Msa0238950 AT1G78550.2 31.535 241 155 3 33 266 5 242 1.93e-41 145
Msa0238950 AT1G06640.1 32.119 302 185 9 1 289 61 355 2.32e-41 147
Msa0238950 AT2G36690.2 30.466 279 180 5 4 273 61 334 2.89e-41 147
Msa0238950 AT2G36690.1 30.466 279 180 5 4 273 61 334 2.89e-41 147
Msa0238950 AT4G22880.1 31.086 267 171 4 5 259 48 313 4.17e-41 146
Msa0238950 AT4G22880.2 31.086 267 171 4 5 259 48 313 4.17e-41 146
Msa0238950 AT4G22880.3 31.086 267 171 4 5 259 48 313 4.17e-41 146
Msa0238950 AT5G63590.1 32.534 292 179 9 3 283 13 297 4.77e-41 145
Msa0238950 AT1G04380.1 32.886 298 173 10 5 288 46 330 5.38e-41 146
Msa0238950 AT3G12900.1 29.373 303 189 9 7 296 59 349 9.07e-41 145
Msa0238950 AT3G13610.1 31.894 301 177 11 2 288 60 346 1.07e-40 145
Msa0238950 AT1G06650.2 31.333 300 186 10 1 287 61 353 1.45e-40 145
Msa0238950 AT1G80340.1 29.831 295 184 9 2 284 48 331 1.69e-40 145
Msa0238950 AT3G61400.1 36.842 247 137 9 17 252 80 318 2.90e-40 145
Msa0238950 AT1G04350.1 32.740 281 169 9 5 273 59 331 6.37e-40 144
Msa0238950 AT1G55290.1 29.470 302 183 10 2 288 60 346 6.51e-40 144
Msa0238950 AT5G54000.1 33.610 241 147 5 37 268 1 237 8.99e-40 140
Msa0238950 AT1G60980.1 28.618 304 189 7 5 288 58 353 3.47e-38 139
Msa0238950 AT2G30840.1 34.553 246 146 8 14 251 71 309 4.48e-38 139
Msa0238950 AT1G06645.1 31.353 303 179 11 1 287 74 363 5.51e-38 139
Msa0238950 AT3G19000.1 32.119 302 178 10 5 284 33 329 1.70e-37 137
Msa0238950 AT5G63600.1 31.834 289 180 10 3 284 32 310 2.01e-37 136
Msa0238950 AT3G60290.1 31.525 295 179 12 3 284 51 335 3.17e-37 136
Msa0238950 AT4G25420.1 28.875 329 202 10 5 314 62 377 6.30e-37 136
Msa0238950 AT5G63600.2 32.069 290 179 11 3 284 32 311 1.27e-36 134
Msa0238950 AT3G19010.3 30.744 309 155 8 2 289 26 296 1.61e-36 134
Msa0238950 AT1G80330.1 27.964 329 193 10 2 311 47 350 7.36e-36 132
Msa0238950 AT3G51240.2 35.341 249 141 7 64 298 18 260 7.96e-36 130
Msa0238950 AT5G43450.2 32.599 227 135 8 5 222 62 279 1.64e-35 130
Msa0238950 AT5G07200.1 28.239 301 193 9 5 286 59 355 2.74e-35 132
Msa0238950 AT1G03400.1 31.907 257 156 6 3 252 55 299 8.41e-35 130
Msa0238950 AT5G51810.1 27.869 305 191 9 5 286 54 352 1.60e-34 129
Msa0238950 AT2G25450.1 31.488 289 172 10 5 273 56 338 2.44e-34 129
Msa0238950 AT2G30840.3 33.740 246 142 9 14 251 71 303 6.35e-34 127
Msa0238950 AT2G44800.1 29.352 293 186 9 4 284 52 335 2.08e-33 126
Msa0238950 AT3G19010.2 34.146 246 137 7 2 226 26 267 2.12e-33 125
Msa0238950 AT1G06620.2 32.468 231 138 6 3 223 61 283 3.84e-33 124
Msa0238950 AT5G07480.1 29.054 296 188 9 5 284 45 334 9.22e-33 124
Msa0238950 AT4G25310.2 30.242 248 133 4 27 267 76 290 1.02e-32 124
Msa0238950 AT1G78440.1 28.912 294 184 10 5 283 19 302 1.22e-32 123
Msa0238950 AT3G61400.2 35.945 217 121 8 17 223 80 288 8.48e-32 120
Msa0238950 AT1G44090.1 26.333 300 201 7 3 286 62 357 1.61e-31 122
Msa0238950 AT1G06640.2 31.092 238 149 6 1 229 61 292 1.94e-31 120
Msa0238950 AT4G25300.2 33.129 163 107 1 110 272 72 232 3.56e-31 118
Msa0238950 AT1G06640.3 31.579 228 141 6 1 219 61 282 3.57e-30 116
Msa0238950 AT3G19000.2 30.924 249 146 9 5 231 33 277 3.86e-30 115
Msa0238950 AT4G21690.1 26.936 297 191 9 4 284 47 333 6.38e-30 117
Msa0238950 AT1G06650.1 30.736 231 145 7 1 222 61 285 7.35e-30 115
Msa0238950 AT5G43440.2 32.159 227 138 8 5 222 63 282 1.49e-29 114
Msa0238950 AT1G50960.1 27.344 256 174 5 5 253 41 291 2.33e-29 115
Msa0238950 AT1G03400.2 29.123 285 155 7 3 252 55 327 2.52e-29 115
Msa0238950 AT2G30840.2 33.333 216 130 7 14 222 71 279 6.10e-29 113
Msa0238950 AT5G59540.2 31.739 230 139 8 5 223 62 284 1.98e-28 111
Msa0238950 AT1G04380.2 31.004 229 137 7 5 223 46 263 2.57e-28 110
Msa0238950 AT1G30040.1 28.859 298 182 13 2 283 29 312 4.39e-28 111
Msa0238950 AT5G12270.1 27.564 312 190 9 5 296 57 352 4.59e-28 112
Msa0238950 AT5G63580.2 31.064 235 138 7 2 223 17 240 1.09e-27 108
Msa0238950 AT5G63580.1 31.034 232 136 7 3 221 18 238 1.99e-27 107
Msa0238950 AT1G47990.1 26.582 316 189 12 2 293 13 309 3.02e-27 108
Msa0238950 AT1G02400.1 29.032 310 200 11 3 300 23 324 6.44e-27 108
Msa0238950 AT5G43935.1 28.808 302 157 11 4 284 19 283 1.55e-26 106
Msa0238950 AT5G51310.1 27.362 307 185 10 5 286 6 299 1.88e-26 107
Msa0238950 AT3G50210.4 28.425 292 177 9 1 261 5 295 8.47e-26 105
Msa0238950 AT3G50210.1 28.425 292 177 9 1 261 5 295 8.47e-26 105
Msa0238950 AT3G50210.3 28.425 292 177 9 1 261 5 295 8.47e-26 105
Msa0238950 AT3G47190.1 28.417 278 166 9 3 260 31 295 1.11e-25 105
Msa0238950 AT4G23340.1 28.727 275 171 9 27 286 30 294 4.31e-25 103
Msa0238950 AT5G07480.2 33.155 187 114 5 104 284 44 225 2.71e-24 99.4
Msa0238950 AT3G49620.1 26.367 311 197 10 4 284 34 342 5.92e-24 100
Msa0238950 AT5G58660.1 24.221 289 177 7 3 259 33 311 1.11e-23 99.8
Msa0238950 AT3G49630.1 25.387 323 203 12 4 293 9 326 2.51e-23 98.6
Msa0238950 AT2G34555.1 27.027 296 183 13 5 283 28 307 2.65e-23 98.6
Msa0238950 AT3G49630.3 25.478 314 203 11 6 293 14 322 9.94e-23 96.7
Msa0238950 AT4G25420.2 28.270 237 146 7 5 223 62 292 1.64e-22 95.5
Msa0238950 AT5G51810.2 27.347 245 150 8 5 226 54 293 1.17e-21 93.2
Msa0238950 AT1G14130.1 26.667 270 180 8 4 266 9 267 6.99e-21 91.3
Msa0238950 AT3G46500.5 26.073 303 198 10 1 284 14 309 2.68e-20 90.1
Msa0238950 AT1G35190.2 29.032 310 172 12 1 284 1 288 9.17e-20 88.2
Msa0238950 AT1G35190.1 27.500 320 187 10 1 284 1 311 1.20e-19 88.2
Msa0238950 AT1G14120.2 26.718 262 158 9 4 250 8 250 6.27e-19 85.9
Msa0238950 AT1G14120.1 26.718 262 158 9 4 250 8 250 6.27e-19 85.9
Msa0238950 AT1G14120.3 26.718 262 158 9 4 250 8 250 6.27e-19 85.9
Msa0238950 AT3G49630.2 29.851 201 126 7 101 293 60 253 1.03e-18 84.3
Msa0238950 AT3G46490.1 25.987 304 185 10 12 284 22 316 8.91e-18 82.8
Msa0238950 AT3G50210.2 29.518 166 110 3 101 261 50 213 1.12e-16 78.6
Msa0238950 AT3G46500.7 25.735 272 177 9 1 253 14 279 1.28e-16 79.3
Msa0238950 AT1G52820.1 24.671 304 195 10 3 287 11 299 1.42e-16 79.3
Msa0238950 AT5G58660.2 22.222 252 155 6 3 223 33 274 1.48e-16 79.0
Msa0238950 AT4G23340.2 30.556 180 114 7 114 286 1 176 2.30e-16 76.6
Msa0238950 AT4G22870.1 33.333 93 62 0 192 284 2 94 2.88e-14 68.6
Msa0238950 AT4G16765.6 28.415 183 120 7 110 285 59 237 5.46e-14 70.9
Msa0238950 AT4G16765.1 28.415 183 120 7 110 285 59 237 5.46e-14 70.9
Msa0238950 AT4G16765.2 28.415 183 120 7 110 285 59 237 5.46e-14 70.9
Msa0238950 AT4G03070.1 25.407 307 190 12 4 287 14 304 2.14e-13 70.1
Msa0238950 AT4G16765.3 30.323 155 98 6 110 257 59 210 4.40e-13 68.2
Msa0238950 AT4G16765.5 32.203 118 72 4 173 285 77 191 9.34e-12 63.9
Msa0238950 AT3G46480.1 33.846 130 73 5 171 290 154 280 1.38e-11 64.7
Msa0238950 AT4G22870.2 38.095 63 39 0 197 259 48 110 8.18e-11 60.1

Find 84 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCATCAAAGATAAATTT+TGG 0.162690 2_2:+12824130 None:intergenic
GGATCAAAGGGTCCAAATTT+TGG 0.169483 2_2:-12825244 Msa0238950:CDS
GGTGCTGTCTCATGCTTCTT+TGG 0.203891 2_2:-12823579 Msa0238950:three_prime_UTR
GAAGGAATTTGCAGAGAAAT+TGG 0.214851 2_2:-12825347 Msa0238950:CDS
TGTTTCATCTTCCTTCAATA+AGG 0.267793 2_2:+12824165 None:intergenic
TGATTACATGAAACTCTATA+TGG 0.281991 2_2:-12824113 Msa0238950:CDS
TGCAGAGAAATTGGAGAAAC+TGG 0.287052 2_2:-12825338 Msa0238950:CDS
TTATTTATTATAATTATAAT+TGG 0.291663 2_2:-12823918 Msa0238950:three_prime_UTR
TTATTAAGCGATTTAGTCTT+TGG 0.304559 2_2:-12823944 Msa0238950:three_prime_UTR
TTCATCATAGCTTCAAATCT+AGG 0.349552 2_2:+12824067 None:intergenic
GTCCACTGACTTTGTCATCT+TGG 0.351335 2_2:+12825128 None:intergenic
TGAGAACTGGGGCTTCTTTG+AGG 0.357576 2_2:-12825949 Msa0238950:intron
CTGTAATCTTCATCAAGATC+TGG 0.357847 2_2:+12825535 None:intergenic
TATTATAATTATAATTGGTA+TGG 0.383464 2_2:-12823913 Msa0238950:three_prime_UTR
CAGAAATAAATGACTTGGAT+TGG 0.385018 2_2:-12825609 Msa0238950:CDS
CAGATCTTGATGAAGATTAC+AGG 0.388120 2_2:-12825534 Msa0238950:intron
TCAAAGATGCTTGTGAGAAC+TGG 0.393049 2_2:-12825962 Msa0238950:CDS
TGGTATATCTATTGAGTTGA+TGG 0.395586 2_2:-12825728 Msa0238950:CDS
CTTAGTCCCTTGATGAGATC+AGG 0.404466 2_2:+12825187 None:intergenic
AGCTTCCCCATGTCAACAAC+TGG 0.410994 2_2:+12826020 None:intergenic
GATTTGTTGTGTGAGAATCT+TGG 0.411723 2_2:-12825301 Msa0238950:CDS
CAAATCTAGGCTCTTTAGCT+TGG 0.420200 2_2:+12824080 None:intergenic
GGAACAAAGGTTCAAAGAAA+TGG 0.423326 2_2:-12825662 Msa0238950:CDS
ACCAGCTTCAACCTTATTGA+AGG 0.428164 2_2:-12824176 Msa0238950:CDS
CAATCCATTGGTCATCTTTG+AGG 0.435292 2_2:+12825098 None:intergenic
AGAAATAAATGACTTGGATT+GGG 0.437102 2_2:-12825608 Msa0238950:CDS
ATAGCTTCATTCTACAATCC+AGG 0.454803 2_2:-12824217 Msa0238950:CDS
CAAAGATGCTTGTGAGAACT+GGG 0.462810 2_2:-12825961 Msa0238950:CDS
AATGGTAGCAAGCAAAGGTT+TGG 0.469440 2_2:-12825644 Msa0238950:CDS
GATTACATGAAACTCTATAT+GGG 0.481290 2_2:-12824112 Msa0238950:CDS
ATTATAATTATAATTGGTAT+GGG 0.481597 2_2:-12823912 Msa0238950:three_prime_UTR
TCTTAGATTGTGTGTGATCA+CGG 0.482945 2_2:-12823836 Msa0238950:intron
CTTTGTCATCTTGGAAGAGA+AGG 0.494111 2_2:+12825137 None:intergenic
GAGAATCTTGGACTTGAGAA+AGG 0.506842 2_2:-12825289 Msa0238950:CDS
ACAATAGAGTGAGGCATTGG+AGG 0.512229 2_2:+12825070 None:intergenic
TCCTTCAATAAGGTTGAAGC+TGG 0.514068 2_2:+12824175 None:intergenic
AGAACACTACAAGAAGTGTA+TGG 0.516839 2_2:-12825683 Msa0238950:CDS
AACTTTCCAGTTGTTGACAT+GGG 0.518326 2_2:-12826026 Msa0238950:CDS
TGTAATCTTCATCAAGATCT+GGG 0.529673 2_2:+12825536 None:intergenic
CTAAGAGCACACACAGATGC+TGG 0.532210 2_2:-12825169 Msa0238950:CDS
ATCTCTGAAATATTAGAAGA+AGG 0.535786 2_2:+12825559 None:intergenic
CACTCTATTGTCATCAACCT+TGG 0.537885 2_2:-12825058 Msa0238950:CDS
ATGACAATAGAGTGAGGCAT+TGG 0.538104 2_2:+12825067 None:intergenic
TCCTAAGCCTGATCTCATCA+AGG 0.541308 2_2:-12825194 Msa0238950:CDS
CTTAGATTGTGTGTGATCAC+GGG 0.545400 2_2:-12823835 Msa0238950:intron
TCAGTCAGAAATAAATGACT+TGG 0.546882 2_2:-12825614 Msa0238950:CDS
GAGATTACAGCATCATTCCC+TGG 0.553448 2_2:+12824199 None:intergenic
ATTATTAGATTGATTATGTG+TGG 0.556597 2_2:-12823986 Msa0238950:three_prime_UTR
AAATATTAGAAGAAGGAAGA+TGG 0.556634 2_2:+12825566 None:intergenic
TTGGAGGGACATCAATCCAT+TGG 0.558262 2_2:+12825086 None:intergenic
AAACTTTCCAGTTGTTGACA+TGG 0.559914 2_2:-12826027 Msa0238950:CDS
AGCTCCTCAAAGATGACCAA+TGG 0.560784 2_2:-12825102 Msa0238950:CDS
GAATTTCAGGAAGACAATGA+AGG 0.565732 2_2:-12825365 Msa0238950:intron
AAAGAAATGGTAGCAAGCAA+AGG 0.566022 2_2:-12825649 Msa0238950:CDS
ATAATTATAATTGGTATGGG+AGG 0.570403 2_2:-12823909 Msa0238950:three_prime_UTR
TCCCACTTCAACACTTGACA+TGG 0.571222 2_2:+12824042 None:intergenic
TGAGAAAGGGTACTTGAAGA+AGG 0.571253 2_2:-12825275 Msa0238950:CDS
TAGCTTCATTCTACAATCCA+GGG 0.576172 2_2:-12824216 Msa0238950:CDS
AGAATCTTGGACTTGAGAAA+GGG 0.581904 2_2:-12825288 Msa0238950:CDS
TGGATTGTAGAATGAAGCTA+TGG 0.584806 2_2:+12824219 None:intergenic
CCCTTGATGAGATCAGGCTT+AGG 0.589238 2_2:+12825193 None:intergenic
AGCATCTTTGATCATCTCCA+TGG 0.591805 2_2:+12825974 None:intergenic
CAATAGAGTGAGGCATTGGA+GGG 0.595012 2_2:+12825071 None:intergenic
AGAGTAATTGCTCAAACAGA+TGG 0.596520 2_2:-12824253 Msa0238950:CDS
ACAAGAAGTGTATGGAACAA+AGG 0.598929 2_2:-12825675 Msa0238950:CDS
ATCAGTTAATCATCACTGAT+CGG 0.603842 2_2:+12823653 None:intergenic
TATTGAGTTGATGGACAAAG+TGG 0.606919 2_2:-12825719 Msa0238950:CDS
AGCCATGTCAAGTGTTGAAG+TGG 0.610067 2_2:-12824044 Msa0238950:CDS
TTCCAAGATGACAAAGTCAG+TGG 0.613018 2_2:-12825130 Msa0238950:CDS
GAAATTGGAGAAACTGGCAG+AGG 0.613456 2_2:-12825332 Msa0238950:CDS
AGAAGAAAGAAAAGCTACCA+TGG 0.614695 2_2:-12825991 Msa0238950:CDS
ATGAGATCAGGCTTAGGACA+AGG 0.618858 2_2:+12825199 None:intergenic
CAACCTTGGTGATCAACTTG+AGG 0.619022 2_2:-12825044 Msa0238950:intron
GCCATGTCAAGTGTTGAAGT+GGG 0.628033 2_2:-12824043 Msa0238950:CDS
CCTAAGCCTGATCTCATCAA+GGG 0.630680 2_2:-12825193 Msa0238950:CDS
ACTTTCCAGTTGTTGACATG+GGG 0.643283 2_2:-12826025 Msa0238950:CDS
TCAACTCAATAGATATACCA+TGG 0.663895 2_2:+12825731 None:intergenic
AGATCAGGCTTAGGACAAGG+AGG 0.668149 2_2:+12825202 None:intergenic
GATCAGGCTTAGGACAAGGA+GGG 0.672116 2_2:+12825203 None:intergenic
TTACCTCAAGTTGATCACCA+AGG 0.697763 2_2:+12825041 None:intergenic
AAAGATGCTTGTGAGAACTG+GGG 0.718775 2_2:-12825960 Msa0238950:CDS
AGGTTGATGACAATAGAGTG+AGG 0.721143 2_2:+12825061 None:intergenic
AGAGCACACACAGATGCTGG+TGG 0.721487 2_2:-12825166 Msa0238950:CDS
GAATGAGAGTATATGCTGTG+AGG 0.775268 2_2:+12826118 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATTATAATTATAAT+TGG - chr2_2:12825748-12825767 Msa0238950:intron 0.0%
!! TTAATATATAAATGTTCATA+AGG - chr2_2:12824652-12824671 Msa0238950:intron 10.0%
!!! TTTGAACATTTTTAAAAATT+GGG + chr2_2:12824849-12824868 None:intergenic 10.0%
!!! ATTTGAACATTTTTAAAAAT+TGG + chr2_2:12824850-12824869 None:intergenic 10.0%
!!! AGAACATTTTTTTATATATT+TGG + chr2_2:12825007-12825026 None:intergenic 10.0%
!!! TAATATGCATTTTTTTTATA+TGG + chr2_2:12825660-12825679 None:intergenic 10.0%
!! TATTATAATTATAATTGGTA+TGG - chr2_2:12825753-12825772 Msa0238950:intron 10.0%
!! ATTATAATTATAATTGGTAT+GGG - chr2_2:12825754-12825773 Msa0238950:intron 10.0%
!!! ATATATGTTTTGTTGTTTAA+AGG - chr2_2:12823867-12823886 Msa0238950:three_prime_UTR 15.0%
!! TCTTAAGTTAAATTGTAAAA+TGG - chr2_2:12824785-12824804 Msa0238950:intron 15.0%
!!! ATTTTTAAAAATTGGGAAAA+GGG + chr2_2:12824842-12824861 None:intergenic 15.0%
!!! CATTTTTTTATATATTTGGA+GGG + chr2_2:12825003-12825022 None:intergenic 15.0%
!!! ACATTTTTTTATATATTTGG+AGG + chr2_2:12825004-12825023 None:intergenic 15.0%
!! AATTAATTTCAATGAAGAAT+TGG + chr2_2:12825084-12825103 None:intergenic 15.0%
!!! AACTTATACTATACTATTTT+TGG + chr2_2:12825317-12825336 None:intergenic 15.0%
!!! TAATCATCAAAGATAAATTT+TGG + chr2_2:12825539-12825558 None:intergenic 15.0%
!! AAAGTTAAAAAGAAGCAAAA+TGG - chr2_2:12823615-12823634 Msa0238950:three_prime_UTR 20.0%
!! TTTATATCTTTGTGAATTTC+AGG - chr2_2:12824288-12824307 Msa0238950:CDS 20.0%
!!! CATTTTTAAAAATTGGGAAA+AGG + chr2_2:12824843-12824862 None:intergenic 20.0%
!!! ATGTCATGTTTTAAGTAAAA+AGG + chr2_2:12824897-12824916 None:intergenic 20.0%
!!! AACATCAATTTTTTTGAAAC+TGG - chr2_2:12825255-12825274 Msa0238950:CDS 20.0%
!!! ACATCAATTTTTTTGAAACT+GGG - chr2_2:12825256-12825275 Msa0238950:CDS 20.0%
!!! GTTTCTTGTTTAATTACATT+TGG - chr2_2:12825334-12825353 Msa0238950:CDS 20.0%
!!! TTTTTTTTATATGGTCACTA+CGG + chr2_2:12825651-12825670 None:intergenic 20.0%
!! ATTATTAGATTGATTATGTG+TGG - chr2_2:12825680-12825699 Msa0238950:CDS 20.0%
!!! TGTTTTTATAAAGCAAAACA+AGG - chr2_2:12826066-12826085 Msa0238950:five_prime_UTR 20.0%
!! AGAAATAAATGACTTGGATT+GGG - chr2_2:12824058-12824077 Msa0238950:CDS 25.0%
! AAATATTAGAAGAAGGAAGA+TGG + chr2_2:12824103-12824122 None:intergenic 25.0%
!!! ATCTCTGAAATATTAGAAGA+AGG + chr2_2:12824110-12824129 None:intergenic 25.0%
!!! TAACTTTTTTTTTACGCTGA+CGG + chr2_2:12824212-12824231 None:intergenic 25.0%
!! CTAACTTTTGTACCAAAATT+TGG + chr2_2:12824437-12824456 None:intergenic 25.0%
! GATATAGTGAAAAATGACAA+AGG + chr2_2:12824957-12824976 None:intergenic 25.0%
!!! CATCAATTTTTTTGAAACTG+GGG - chr2_2:12825257-12825276 Msa0238950:CDS 25.0%
! TAAAAACAGGTGATAACAAA+TGG - chr2_2:12825368-12825387 Msa0238950:intron 25.0%
! AAAAACAGGTGATAACAAAT+GGG - chr2_2:12825369-12825388 Msa0238950:intron 25.0%
! TGATTACATGAAACTCTATA+TGG - chr2_2:12825553-12825572 Msa0238950:CDS 25.0%
! GATTACATGAAACTCTATAT+GGG - chr2_2:12825554-12825573 Msa0238950:CDS 25.0%
!!! TTTTTTTATATGGTCACTAC+GGG + chr2_2:12825650-12825669 None:intergenic 25.0%
!! TTATTAAGCGATTTAGTCTT+TGG - chr2_2:12825722-12825741 Msa0238950:CDS 25.0%
! ATAATTATAATTGGTATGGG+AGG - chr2_2:12825757-12825776 Msa0238950:intron 25.0%
ACAGTGCATGTTTAGATTAA+CGG - chr2_2:12823778-12823797 Msa0238950:intron 30.0%
TCAACTCAATAGATATACCA+TGG + chr2_2:12823938-12823957 None:intergenic 30.0%
!! TGGTATATCTATTGAGTTGA+TGG - chr2_2:12823938-12823957 Msa0238950:three_prime_UTR 30.0%
TCAGTCAGAAATAAATGACT+TGG - chr2_2:12824052-12824071 Msa0238950:CDS 30.0%
! CAGAAATAAATGACTTGGAT+TGG - chr2_2:12824057-12824076 Msa0238950:CDS 30.0%
TGTAATCTTCATCAAGATCT+GGG + chr2_2:12824133-12824152 None:intergenic 30.0%
!!! TACTTGAAGAAGGTGTTTTA+TGG - chr2_2:12824401-12824420 Msa0238950:intron 30.0%
!! AAGGTGTTTTATGGATCAAA+GGG - chr2_2:12824410-12824429 Msa0238950:intron 30.0%
AATGACAAAGGAGAAAACAT+TGG + chr2_2:12824945-12824964 None:intergenic 30.0%
TGTTTCATCTTCCTTCAATA+AGG + chr2_2:12825504-12825523 None:intergenic 30.0%
TTCATCATAGCTTCAAATCT+AGG + chr2_2:12825602-12825621 None:intergenic 30.0%
ATCAGTTAATCATCACTGAT+CGG + chr2_2:12826016-12826035 None:intergenic 30.0%
AAACTTTCCAGTTGTTGACA+TGG - chr2_2:12823639-12823658 Msa0238950:three_prime_UTR 35.0%
AACTTTCCAGTTGTTGACAT+GGG - chr2_2:12823640-12823659 Msa0238950:three_prime_UTR 35.0%
AGAAGAAAGAAAAGCTACCA+TGG - chr2_2:12823675-12823694 Msa0238950:intron 35.0%
!!! TTTTTGAAGTGTGTGAACCA+TGG - chr2_2:12823918-12823937 Msa0238950:three_prime_UTR 35.0%
!! TATTGAGTTGATGGACAAAG+TGG - chr2_2:12823947-12823966 Msa0238950:three_prime_UTR 35.0%
! AGAACACTACAAGAAGTGTA+TGG - chr2_2:12823983-12824002 Msa0238950:three_prime_UTR 35.0%
! ACAAGAAGTGTATGGAACAA+AGG - chr2_2:12823991-12824010 Msa0238950:three_prime_UTR 35.0%
GGAACAAAGGTTCAAAGAAA+TGG - chr2_2:12824004-12824023 Msa0238950:three_prime_UTR 35.0%
AAAGAAATGGTAGCAAGCAA+AGG - chr2_2:12824017-12824036 Msa0238950:exon 35.0%
CTGTAATCTTCATCAAGATC+TGG + chr2_2:12824134-12824153 None:intergenic 35.0%
CAGATCTTGATGAAGATTAC+AGG - chr2_2:12824132-12824151 Msa0238950:CDS 35.0%
GAATTTCAGGAAGACAATGA+AGG - chr2_2:12824301-12824320 Msa0238950:intron 35.0%
GAAGGAATTTGCAGAGAAAT+TGG - chr2_2:12824319-12824338 Msa0238950:intron 35.0%
!! GATTTGTTGTGTGAGAATCT+TGG - chr2_2:12824365-12824384 Msa0238950:intron 35.0%
AGAATCTTGGACTTGAGAAA+GGG - chr2_2:12824378-12824397 Msa0238950:intron 35.0%
!!! GAAGGTGTTTTATGGATCAA+AGG - chr2_2:12824409-12824428 Msa0238950:intron 35.0%
TCTTAAGCTAACACATCAAG+TGG + chr2_2:12824726-12824745 None:intergenic 35.0%
TGTAGCTAATGCACTCTAAA+TGG - chr2_2:12824869-12824888 Msa0238950:intron 35.0%
!! AACATTGGACTAGTAGAGTA+TGG + chr2_2:12824930-12824949 None:intergenic 35.0%
GGTACTTCTCTGTTAAAAAC+AGG - chr2_2:12825355-12825374 Msa0238950:CDS 35.0%
AGAGTAATTGCTCAAACAGA+TGG - chr2_2:12825413-12825432 Msa0238950:intron 35.0%
TGGATTGTAGAATGAAGCTA+TGG + chr2_2:12825450-12825469 None:intergenic 35.0%
ATAGCTTCATTCTACAATCC+AGG - chr2_2:12825449-12825468 Msa0238950:intron 35.0%
TAGCTTCATTCTACAATCCA+GGG - chr2_2:12825450-12825469 Msa0238950:intron 35.0%
TCTTAGATTGTGTGTGATCA+CGG - chr2_2:12825830-12825849 Msa0238950:intron 35.0%
AACCACTTTGATGCCATTAA+TGG - chr2_2:12825854-12825873 Msa0238950:intron 35.0%
ATGTAATGGTATGGTGACAT+TGG + chr2_2:12825882-12825901 None:intergenic 35.0%
GTGATGTAGATGTAATGGTA+TGG + chr2_2:12825891-12825910 None:intergenic 35.0%
TGTGTGTGATGTAGATGTAA+TGG + chr2_2:12825896-12825915 None:intergenic 35.0%
ATACTTCAGTGACTTAGCTT+AGG + chr2_2:12825979-12825998 None:intergenic 35.0%
! GAATGAGAGTATATGCTGTG+AGG + chr2_2:12823551-12823570 None:intergenic 40.0%
ACTTTCCAGTTGTTGACATG+GGG - chr2_2:12823641-12823660 Msa0238950:three_prime_UTR 40.0%
AGCATCTTTGATCATCTCCA+TGG + chr2_2:12823695-12823714 None:intergenic 40.0%
TCAAAGATGCTTGTGAGAAC+TGG - chr2_2:12823704-12823723 Msa0238950:intron 40.0%
CAAAGATGCTTGTGAGAACT+GGG - chr2_2:12823705-12823724 Msa0238950:intron 40.0%
AAAGATGCTTGTGAGAACTG+GGG - chr2_2:12823706-12823725 Msa0238950:intron 40.0%
GAATCAGAGTGAACTTAACG+AGG + chr2_2:12823836-12823855 None:intergenic 40.0%
AATGGTAGCAAGCAAAGGTT+TGG - chr2_2:12824022-12824041 Msa0238950:exon 40.0%
TGCAGAGAAATTGGAGAAAC+TGG - chr2_2:12824328-12824347 Msa0238950:intron 40.0%
GAGAATCTTGGACTTGAGAA+AGG - chr2_2:12824377-12824396 Msa0238950:intron 40.0%
!! TGAGAAAGGGTACTTGAAGA+AGG - chr2_2:12824391-12824410 Msa0238950:intron 40.0%
! GGATCAAAGGGTCCAAATTT+TGG - chr2_2:12824422-12824441 Msa0238950:intron 40.0%
CTTTGTCATCTTGGAAGAGA+AGG + chr2_2:12824532-12824551 None:intergenic 40.0%
TTCCAAGATGACAAAGTCAG+TGG - chr2_2:12824536-12824555 Msa0238950:intron 40.0%
CAATCCATTGGTCATCTTTG+AGG + chr2_2:12824571-12824590 None:intergenic 40.0%
ATGACAATAGAGTGAGGCAT+TGG + chr2_2:12824602-12824621 None:intergenic 40.0%
!! AGGTTGATGACAATAGAGTG+AGG + chr2_2:12824608-12824627 None:intergenic 40.0%
CACTCTATTGTCATCAACCT+TGG - chr2_2:12824608-12824627 Msa0238950:intron 40.0%
!! TTACCTCAAGTTGATCACCA+AGG + chr2_2:12824628-12824647 None:intergenic 40.0%
ACCAGCTTCAACCTTATTGA+AGG - chr2_2:12825490-12825509 Msa0238950:intron 40.0%
TCCTTCAATAAGGTTGAAGC+TGG + chr2_2:12825494-12825513 None:intergenic 40.0%
CAAATCTAGGCTCTTTAGCT+TGG + chr2_2:12825589-12825608 None:intergenic 40.0%
CTTAGATTGTGTGTGATCAC+GGG - chr2_2:12825831-12825850 Msa0238950:intron 40.0%
TGCCATTAATGGCATCAAAG+TGG + chr2_2:12825859-12825878 None:intergenic 40.0%
TGATGTGTGTGAATGTGTGT+GGG + chr2_2:12825923-12825942 None:intergenic 40.0%
TTGATGTGTGTGAATGTGTG+TGG + chr2_2:12825924-12825943 None:intergenic 40.0%
CACACATTCACACACATCAA+CGG - chr2_2:12825924-12825943 Msa0238950:intron 40.0%
GAAATTGGAGAAACTGGCAG+AGG - chr2_2:12824334-12824353 Msa0238950:intron 45.0%
ATGAGATCAGGCTTAGGACA+AGG + chr2_2:12824470-12824489 None:intergenic 45.0%
TCCTAAGCCTGATCTCATCA+AGG - chr2_2:12824472-12824491 Msa0238950:intron 45.0%
CCTAAGCCTGATCTCATCAA+GGG - chr2_2:12824473-12824492 Msa0238950:intron 45.0%
CTTAGTCCCTTGATGAGATC+AGG + chr2_2:12824482-12824501 None:intergenic 45.0%
!! GTCCACTGACTTTGTCATCT+TGG + chr2_2:12824541-12824560 None:intergenic 45.0%
AGCTCCTCAAAGATGACCAA+TGG - chr2_2:12824564-12824583 Msa0238950:intron 45.0%
TTGGAGGGACATCAATCCAT+TGG + chr2_2:12824583-12824602 None:intergenic 45.0%
!! CAATAGAGTGAGGCATTGGA+GGG + chr2_2:12824598-12824617 None:intergenic 45.0%
!! ACAATAGAGTGAGGCATTGG+AGG + chr2_2:12824599-12824618 None:intergenic 45.0%
! CAACCTTGGTGATCAACTTG+AGG - chr2_2:12824622-12824641 Msa0238950:intron 45.0%
TAACCATCGTGTCGCAATTG+TGG - chr2_2:12824688-12824707 Msa0238950:intron 45.0%
GAGATTACAGCATCATTCCC+TGG + chr2_2:12825470-12825489 None:intergenic 45.0%
!! AGCCATGTCAAGTGTTGAAG+TGG - chr2_2:12825622-12825641 Msa0238950:CDS 45.0%
!! GCCATGTCAAGTGTTGAAGT+GGG - chr2_2:12825623-12825642 Msa0238950:CDS 45.0%
TCCCACTTCAACACTTGACA+TGG + chr2_2:12825627-12825646 None:intergenic 45.0%
!! GGTGACATTGGTGCCATTAA+TGG + chr2_2:12825870-12825889 None:intergenic 45.0%
GATTTCTCCAATGGCACCAA+TGG - chr2_2:12825951-12825970 Msa0238950:CDS 45.0%
! TGACTTAGCTTAGGTGCCAT+TGG + chr2_2:12825970-12825989 None:intergenic 45.0%
ATCACTGATCGGTGATCACA+CGG + chr2_2:12826005-12826024 None:intergenic 45.0%
AGCTTCCCCATGTCAACAAC+TGG + chr2_2:12823649-12823668 None:intergenic 50.0%
TGAGAACTGGGGCTTCTTTG+AGG - chr2_2:12823717-12823736 Msa0238950:intron 50.0%
GATCAGGCTTAGGACAAGGA+GGG + chr2_2:12824466-12824485 None:intergenic 50.0%
AGATCAGGCTTAGGACAAGG+AGG + chr2_2:12824467-12824486 None:intergenic 50.0%
CCCTTGATGAGATCAGGCTT+AGG + chr2_2:12824476-12824495 None:intergenic 50.0%
! CTAAGAGCACACACAGATGC+TGG - chr2_2:12824497-12824516 Msa0238950:intron 50.0%
TGACCACAATTGCGACACGA+TGG + chr2_2:12824694-12824713 None:intergenic 50.0%
ATTCACACACATCAACGGCC+AGG - chr2_2:12825929-12825948 Msa0238950:intron 50.0%
AACGGCCAGGATTTCTCCAA+TGG - chr2_2:12825942-12825961 Msa0238950:intron 50.0%
!! TGGTGCCATTGGAGAAATCC+TGG + chr2_2:12825950-12825969 None:intergenic 50.0%
!! TTAGGTGCCATTGGTGCCAT+TGG + chr2_2:12825961-12825980 None:intergenic 50.0%
TCACTGATCGGTGATCACAC+GGG + chr2_2:12826004-12826023 None:intergenic 50.0%
! GGTGCTGTCTCATGCTTCTT+TGG - chr2_2:12826087-12826106 Msa0238950:five_prime_UTR 50.0%
!! CTGGGGCTTCTTTGAGGTAC+TGG - chr2_2:12823723-12823742 Msa0238950:intron 55.0%
AGAGCACACACAGATGCTGG+TGG - chr2_2:12824500-12824519 Msa0238950:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 12823543 12826145 12823543 ID=Msa0238950;Name=Msa0238950
chr2_2 mRNA 12823543 12826145 12823543 ID=Msa0238950-mRNA-1;Parent=Msa0238950;Name=Msa0238950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=91|1|1|1|0.75|0.6|5|318|317
chr2_2 exon 12823543 12823674 12823543 ID=Msa0238950-mRNA-1:exon:5461;Parent=Msa0238950-mRNA-1
chr2_2 exon 12823838 12824311 12823838 ID=Msa0238950-mRNA-1:exon:5460;Parent=Msa0238950-mRNA-1
chr2_2 exon 12825045 12825378 12825045 ID=Msa0238950-mRNA-1:exon:5459;Parent=Msa0238950-mRNA-1
chr2_2 exon 12825535 12825761 12825535 ID=Msa0238950-mRNA-1:exon:5458;Parent=Msa0238950-mRNA-1
chr2_2 exon 12825950 12826145 12825950 ID=Msa0238950-mRNA-1:exon:5457;Parent=Msa0238950-mRNA-1
chr2_2 five_prime_UTR 12826055 12826145 12826055 ID=Msa0238950-mRNA-1:five_prime_utr;Parent=Msa0238950-mRNA-1
chr2_2 CDS 12825950 12826054 12825950 ID=Msa0238950-mRNA-1:cds;Parent=Msa0238950-mRNA-1
chr2_2 CDS 12825535 12825761 12825535 ID=Msa0238950-mRNA-1:cds;Parent=Msa0238950-mRNA-1
chr2_2 CDS 12825045 12825378 12825045 ID=Msa0238950-mRNA-1:cds;Parent=Msa0238950-mRNA-1
chr2_2 CDS 12824024 12824311 12824024 ID=Msa0238950-mRNA-1:cds;Parent=Msa0238950-mRNA-1
chr2_2 three_prime_UTR 12823838 12824023 12823838 ID=Msa0238950-mRNA-1:three_prime_utr;Parent=Msa0238950-mRNA-1
chr2_2 three_prime_UTR 12823543 12823674 12823543 ID=Msa0238950-mRNA-1:three_prime_utr;Parent=Msa0238950-mRNA-1
Gene Sequence

>Msa0238950

ATGGAAAACTTTCCAGTTGTTGACATGGGGAAGCTTAACACAGAAGAAAGAAAAGCTACCATGGAGATGATCAAAGATGCTTGTGAGAACTGGGGCTTCTTTGAGTGTGTGAACCATGGTATATCTATTGAGTTGATGGACAAAGTGGAGAAGCTCACAAAAGAACACTACAAGAAGTGTATGGAACAAAGGTTCAAAGAAATGGTAGCAAGCAAAGGTTTGGAGTGTGTTCAGTCAGAAATAAATGACTTGGATTGGGAAAGCACTTTCTTTTTGCGCCATCTTCCTTCTTCTAATATTTCAGAGATCCCAGATCTTGATGAAGATTACAGGAAGACAATGAAGGAATTTGCAGAGAAATTGGAGAAACTGGCAGAGGAACTTCTTGATTTGTTGTGTGAGAATCTTGGACTTGAGAAAGGGTACTTGAAGAAGGTGTTTTATGGATCAAAGGGTCCAAATTTTGGTACAAAAGTTAGTAACTACCCTCCTTGTCCTAAGCCTGATCTCATCAAGGGACTAAGAGCACACACAGATGCTGGTGGCATCATCCTTCTCTTCCAAGATGACAAAGTCAGTGGACTTCAGCTCCTCAAAGATGACCAATGGATTGATGTCCCTCCAATGCCTCACTCTATTGTCATCAACCTTGGTGATCAACTTGAGGTGATAACAAATGGGAAGTACAAGAGTGTGATGCACAGAGTAATTGCTCAAACAGATGGTGCTAGAATGTCCATAGCTTCATTCTACAATCCAGGGAATGATGCTGTAATCTCACCAGCTTCAACCTTATTGAAGGAAGATGAAACAAGTGAAATTTATCCAAAATTTATCTTTGATGATTACATGAAACTCTATATGGGACTCAAGTTCCAAGCTAAAGAGCCTAGATTTGAAGCTATGATGAAAGCCATGTCAAGTGTTGAAGTGGGACCCGTAGTGACCATATAA
Protein sequence

>Msa0238950

MENFPVVDMGKLNTEERKATMEMIKDACENWGFFECVNHGISIELMDKVEKLTKEHYKKCMEQRFKEMVASKGLECVQSEINDLDWESTFFLRHLPSSNISEIPDLDEDYRKTMKEFAEKLEKLAEELLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMPHSIVINLGDQLEVITNGKYKSVMHRVIAQTDGARMSIASFYNPGNDAVISPASTLLKEDETSEIYPKFIFDDYMKLYMGLKFQAKEPRFEAMMKAMSSVEVGPVVTI*