AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028560 MtrunA17_Chr1g0185181 98.871 886 10 0 1 886 1 886 0.0 1810
Msa0028560 MtrunA17_Chr4g0005681 50.758 857 399 4 46 880 88 943 0.0 820
Msa0028560 MtrunA17_Chr3g0105811 46.514 875 435 7 35 881 51 920 0.0 766
Msa0028560 MtrunA17_Chr7g0243131 56.204 685 299 1 196 880 1 684 0.0 743
Msa0028560 MtrunA17_Chr7g0243111 37.143 105 57 2 40 137 71 173 9.30e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028560 AT4G02680.1 68.391 889 277 3 1 886 1 888 0.0 1207
Msa0028560 AT3G51770.1 51.176 850 398 5 51 886 101 947 0.0 834
Msa0028560 AT3G51770.2 51.176 850 398 5 51 886 109 955 0.0 833
Msa0028560 AT5G58550.1 47.245 853 424 5 51 880 60 909 0.0 744

Find 224 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATATAAATTACAAAATT+TGG 0.054987 1_1:+53541029 None:intergenic
CCGTTTCGTGCGATGTTAAA+TGG 0.150939 1_1:-53544989 Msa0028560:CDS
CGATGTTAAATGGGGATTTC+TGG 0.185566 1_1:-53544979 Msa0028560:CDS
GGCCATGTTTATTCTGTTAC+TGG 0.212572 1_1:-53544365 Msa0028560:CDS
AGAGGATTGTGATGACAATT+TGG 0.218257 1_1:+53545596 None:intergenic
GGTAAACGTCAAAACGAATA+TGG 0.242747 1_1:-53545169 Msa0028560:CDS
TCCCACTATCTTTCTGTTGT+TGG 0.253404 1_1:+53546303 None:intergenic
CCAACATTTCTTGGTGGTTT+GGG 0.261388 1_1:+53541266 None:intergenic
AAGAGTCTATTTGCATTAAA+AGG 0.266900 1_1:-53542636 Msa0028560:CDS
GCTCGACTTGACTCTATAAA+AGG 0.277111 1_1:-53544338 Msa0028560:CDS
CACAATATAGTGATCTTTCT+TGG 0.280637 1_1:+53544246 None:intergenic
AGAACTTAAGTGCTCTTCTT+TGG 0.282552 1_1:+53545662 None:intergenic
TCCAACATTTCTTGGTGGTT+TGG 0.283235 1_1:+53541265 None:intergenic
AATATCTCCAACAGAAGTTT+TGG 0.284261 1_1:+53544848 None:intergenic
TCTGTTTCTGTTTCAATATC+AGG 0.287273 1_1:-53545341 Msa0028560:CDS
TATGAAGTTCCAACATTTCT+TGG 0.289589 1_1:+53541257 None:intergenic
TTCACGAGAGGATTGTATTT+GGG 0.293023 1_1:-53545246 Msa0028560:CDS
TTGTATATCCCTACATGTAT+AGG 0.294097 1_1:-53544169 Msa0028560:CDS
CAATGGCTTCCAGTTCCTTA+TGG 0.297587 1_1:+53541416 None:intergenic
AAATCAAACCTTTACAAATC+AGG 0.298717 1_1:+53545769 None:intergenic
GTTCACGAGAGGATTGTATT+TGG 0.315389 1_1:-53545247 Msa0028560:CDS
ACTGTTGGCCTTTCATCGTT+TGG 0.316810 1_1:-53544456 Msa0028560:CDS
GAATATAAATTACAAAATTT+GGG 0.324163 1_1:+53541030 None:intergenic
CGGCCAATGCATAGGCCTTT+AGG 0.325658 1_1:+53542596 None:intergenic
CTCACTGCTTGAGCGATAAT+CGG 0.328486 1_1:-53544655 Msa0028560:CDS
AATAGTGGCTGCAACTTCTA+TGG 0.329185 1_1:-53546337 Msa0028560:five_prime_UTR
GAGTTCGATAGCATCTTCTT+TGG 0.333660 1_1:+53544751 None:intergenic
AACATGACTCGAGTTCTTCA+TGG 0.333911 1_1:+53545383 None:intergenic
CTGTTGGCCTTTCATCGTTT+GGG 0.333917 1_1:-53544455 Msa0028560:CDS
TTTATATTCTTGCTATCCTT+TGG 0.335070 1_1:-53541016 Msa0028560:three_prime_UTR
TTTGAGAGCGCTGTAAATAA+TGG 0.335421 1_1:-53544386 Msa0028560:CDS
GGGTTGTTGTTGTGGAGATC+TGG 0.339634 1_1:-53545737 Msa0028560:five_prime_UTR
CCACCATACTCGAGCCCATC+AGG 0.343844 1_1:-53541754 Msa0028560:CDS
TCAAATGGATACGAAAGTTT+TGG 0.348747 1_1:+53546127 None:intergenic
GACCCTGATGGGCTCGAGTA+TGG 0.351890 1_1:+53541751 None:intergenic
AGTGAGGAAGATCACGTAAA+AGG 0.359579 1_1:+53544672 None:intergenic
AAACACTTCCAAGATTGTTC+AGG 0.361478 1_1:+53541835 None:intergenic
CGTTTCGTGCGATGTTAAAT+GGG 0.362269 1_1:-53544988 Msa0028560:CDS
TACCAGGCCCTGAACAATCT+TGG 0.373501 1_1:-53541843 Msa0028560:intron
TGAAAACAATATATCTCCTT+CGG 0.376028 1_1:-53544927 Msa0028560:CDS
TGTATATCCCTACATGTATA+GGG 0.376269 1_1:-53544168 Msa0028560:CDS
GAGGATTGTGATGACAATTT+GGG 0.378582 1_1:+53545597 None:intergenic
TCTATCACAACAATACTTGT+TGG 0.379743 1_1:+53544817 None:intergenic
TAAACTTTCGTTAGAATGCT+TGG 0.380126 1_1:-53544078 Msa0028560:CDS
TATGAGAAGAGATCCGAGTA+TGG 0.389290 1_1:-53541636 Msa0028560:CDS
GCATTGGCCGACTCTGGTCT+TGG 0.390640 1_1:-53542583 Msa0028560:CDS
GGTTGTTGTTGTGGAGATCT+GGG 0.406845 1_1:-53545736 Msa0028560:five_prime_UTR
TAAGCAGCAGTTGGCAGTTA+TGG 0.413136 1_1:-53544606 Msa0028560:CDS
ATCTTCTTTGGAAGTAACTA+AGG 0.415086 1_1:+53544763 None:intergenic
CCATTGAAGAAAGTCCTCAT+AGG 0.422614 1_1:+53545693 None:intergenic
TTTGAGGTTGAGGGTAATAG+TGG 0.424534 1_1:-53545831 Msa0028560:five_prime_UTR
GGATAAGCCACATATATATC+TGG 0.426164 1_1:+53540977 None:intergenic
AATAGTGGAATGTGACTAGT+AGG 0.428643 1_1:-53545816 Msa0028560:five_prime_UTR
GATGTTAAATGGGGATTTCT+GGG 0.432641 1_1:-53544978 Msa0028560:CDS
TTTGACGACGGCAGATTGTT+GGG 0.432677 1_1:-53543901 Msa0028560:CDS
AAGTTGCAGCCACTATTTGT+TGG 0.433023 1_1:+53546343 None:intergenic
GGGCATTCCTCTCTTTAGAA+AGG 0.433690 1_1:+53541050 None:intergenic
CAAGTTCAGTTGCTTTCTCA+AGG 0.436990 1_1:+53544201 None:intergenic
TGATAATCTGCGCAAAGGTC+AGG 0.439110 1_1:-53542503 Msa0028560:intron
TCCGCGTTATAGAATGTTTG+AGG 0.440849 1_1:-53543976 Msa0028560:CDS
TGTGTTACCGTTCTTTAAAC+CGG 0.443507 1_1:-53545434 Msa0028560:CDS
GTTCTCTTAATCCACAATCA+TGG 0.443606 1_1:-53545644 Msa0028560:CDS
GAAAACAATATATCTCCTTC+GGG 0.443685 1_1:-53544926 Msa0028560:CDS
CACCAACAACAGAAAGATAG+TGG 0.445917 1_1:-53546305 Msa0028560:five_prime_UTR
GTGCACTGGCTGAAATTAAT+CGG 0.446185 1_1:-53544112 Msa0028560:CDS
ATCCATCCGAGTCGAGTGAC+AGG 0.451951 1_1:+53544272 None:intergenic
CTAGTTGCTGGTTTGTTGAC+TGG 0.454339 1_1:-53545190 Msa0028560:CDS
GACAGTCATTGCTTCTCCTC+AGG 0.455426 1_1:-53543776 Msa0028560:intron
TCTTTCTGTTGTTGGTGTGT+TGG 0.455749 1_1:+53546311 None:intergenic
AAGGGCTTTAATATAGCAAT+CGG 0.456191 1_1:+53541782 None:intergenic
CATTCATCAAAACACTCTCC+TGG 0.459352 1_1:+53545098 None:intergenic
TGCGGAGTTTACAGTTAGCT+TGG 0.466730 1_1:-53542750 Msa0028560:CDS
ATTTGACGACGGCAGATTGT+TGG 0.467560 1_1:-53543902 Msa0028560:CDS
TCGCTCTCCGCCATGCTTCG+CGG 0.467797 1_1:+53545275 None:intergenic
GATGGACAACCATAAGGAAC+TGG 0.469162 1_1:-53541425 Msa0028560:CDS
GCCTATGCATTGGCCGACTC+TGG 0.469181 1_1:-53542589 Msa0028560:CDS
TTGTGTCTGAACTAGAGTTA+AGG 0.471631 1_1:+53544531 None:intergenic
TGACAAGGCTGCTGCTTACA+AGG 0.472593 1_1:-53541703 Msa0028560:CDS
CCATTTAACATCGCACGAAA+CGG 0.475186 1_1:+53544989 None:intergenic
AGTCTCTCCAAAACTTCTGT+TGG 0.475277 1_1:-53544855 Msa0028560:CDS
AACACTTCCAAGATTGTTCA+GGG 0.476172 1_1:+53541836 None:intergenic
TAGAAAGGAAAATGATATCA+TGG 0.482871 1_1:+53541065 None:intergenic
ATATGCAGGAAAGGGTCAAA+TGG 0.484370 1_1:+53546112 None:intergenic
GTATGATACTGGTCATTATG+AGG 0.485156 1_1:-53542677 Msa0028560:CDS
AGAAGATGCTATCGAACTCA+TGG 0.485643 1_1:-53544747 Msa0028560:CDS
TAATATAGCAATCGGCTGCT+TGG 0.486527 1_1:+53541790 None:intergenic
TTGTTGTGATAGATTAAAAG+AGG 0.488749 1_1:-53544807 Msa0028560:CDS
TCTTTGACCCTGATTTGTAA+AGG 0.491027 1_1:-53545777 Msa0028560:five_prime_UTR
CCGCGTTATAGAATGTTTGA+GGG 0.494477 1_1:-53543975 Msa0028560:CDS
TCACTGCTTGAGCGATAATC+GGG 0.495907 1_1:-53544654 Msa0028560:CDS
ATGGTTGAAATATGAGAAGC+AGG 0.502476 1_1:-53545221 Msa0028560:CDS
CTTGAATCTGATGCGGCAAA+AGG 0.502861 1_1:-53543813 Msa0028560:CDS
CCCAAACCACCAAGAAATGT+TGG 0.503161 1_1:-53541266 Msa0028560:CDS
AAAACTTCGACATAATCAAC+CGG 0.504243 1_1:+53545415 None:intergenic
ATAAGTTATTTCAGTATGAC+TGG 0.510443 1_1:-53544893 Msa0028560:CDS
GAGAAGGGTTTGAAGATGAA+AGG 0.513472 1_1:+53546201 None:intergenic
AATCAAACCTTTACAAATCA+GGG 0.513574 1_1:+53545770 None:intergenic
GCGGTAATAAAATACATGTA+TGG 0.515136 1_1:+53540947 None:intergenic
GCTGAAATTAATCGGATACT+TGG 0.515937 1_1:-53544104 Msa0028560:CDS
AGACTGTCGTGCTGCACTCT+CGG 0.518787 1_1:-53541293 Msa0028560:CDS
AGAGAATTCTCAAGGTGCAC+TGG 0.519053 1_1:-53544126 Msa0028560:CDS
ATCTTACATTGATGCAGAAG+AGG 0.519598 1_1:+53545578 None:intergenic
GTAAACGTCAAAACGAATAT+GGG 0.522451 1_1:-53545168 Msa0028560:CDS
CCTGCTGCTCGATATCTGTA+AGG 0.523465 1_1:+53541549 None:intergenic
CCTATGAGGACTTTCTTCAA+TGG 0.524229 1_1:-53545693 Msa0028560:CDS
TTTCCTAAAGGCCTATGCAT+TGG 0.524357 1_1:-53542599 Msa0028560:CDS
AGAGGATTGTATTTGGGGCA+TGG 0.524901 1_1:-53545240 Msa0028560:CDS
TCACGAGAGGATTGTATTTG+GGG 0.525061 1_1:-53545245 Msa0028560:CDS
AAATACATGTATGGTTGTTG+AGG 0.526165 1_1:+53540956 None:intergenic
ATTTCCCCTGTCACTCGACT+CGG 0.526456 1_1:-53544278 Msa0028560:CDS
AATAAGGAATATGCAGGAAA+GGG 0.526953 1_1:+53546104 None:intergenic
GGTCCACATCCAACAAATAG+TGG 0.528512 1_1:-53546352 None:intergenic
ATGAGAAGAGATCCGAGTAT+GGG 0.528955 1_1:-53541635 Msa0028560:CDS
CCTTACAGATATCGAGCAGC+AGG 0.529501 1_1:-53541549 Msa0028560:intron
GCAGAAAGAAAGAAATGAGA+AGG 0.531163 1_1:+53546185 None:intergenic
AGATGCAGCCCTATACATGT+AGG 0.534074 1_1:+53544160 None:intergenic
GAAGTTCCAACATTTCTTGG+TGG 0.535323 1_1:+53541260 None:intergenic
GAATAATAGGGTTGTTGTTG+TGG 0.535996 1_1:-53545745 Msa0028560:five_prime_UTR
AAATAAGGAATATGCAGGAA+AGG 0.537352 1_1:+53546103 None:intergenic
TTCGTGTATTATGCCCTATG+AGG 0.539626 1_1:-53545707 Msa0028560:exon
GCATGAAAGACTTGTATATG+AGG 0.540587 1_1:-53542710 Msa0028560:CDS
GATACTGGTCATTATGAGGA+AGG 0.545226 1_1:-53542673 Msa0028560:CDS
TCATGGCTTCAAGTTGAAAG+AGG 0.546316 1_1:-53545627 Msa0028560:CDS
CGCAGCGTTCCATGAACACA+AGG 0.546764 1_1:-53541338 Msa0028560:CDS
AAACTCCGCATAGCTGCCTC+AGG 0.547345 1_1:+53542763 None:intergenic
TGACTCTATAAAAGGTGAGA+AGG 0.549853 1_1:-53544330 Msa0028560:CDS
AAAGAAGCCTCCGCGAAGCA+TGG 0.550163 1_1:-53545285 Msa0028560:CDS
TTATAGTGAATCTCTAATCA+AGG 0.550486 1_1:-53545470 Msa0028560:intron
GCATCAAATAAGGAATATGC+AGG 0.550988 1_1:+53546098 None:intergenic
ACGGTAACACAGGTGGCTGT+TGG 0.551175 1_1:+53545446 None:intergenic
GCTGATGATTGTACAAATGC+TGG 0.551964 1_1:+53541176 None:intergenic
CGTTAGAATGCTTGGAACTG+CGG 0.552505 1_1:-53544070 Msa0028560:CDS
AACACGCGCAAGACCCTGAT+GGG 0.553316 1_1:+53541740 None:intergenic
ATGTAGGGATATACAAGAGT+GGG 0.553780 1_1:+53544176 None:intergenic
TTGGCAGTTATGGTAGGTCA+AGG 0.553971 1_1:-53544596 Msa0028560:CDS
TATCTTATCTTGAAAAGAAG+AGG 0.558175 1_1:+53540903 None:intergenic
TCATGCTAATAAGCAGCAGT+TGG 0.558599 1_1:-53544615 Msa0028560:CDS
TCAACTTGAAGCCATGATTG+TGG 0.559627 1_1:+53545633 None:intergenic
CAAACTTGACTCATGGTTCG+TGG 0.559712 1_1:+53541221 None:intergenic
ATATGAGACTCCACATCTAT+CGG 0.562574 1_1:+53545145 None:intergenic
TACACATCCCAAACGATGAA+AGG 0.563344 1_1:+53544448 None:intergenic
CACTTCTCGAAGATGCCTTG+AGG 0.563644 1_1:-53542534 Msa0028560:CDS
CATTGAAGAAAGTCCTCATA+GGG 0.564706 1_1:+53545694 None:intergenic
AGTCAAGTTTGCGAGCTATG+AGG 0.569226 1_1:-53541209 Msa0028560:three_prime_UTR
TGATGTCAAGGTAAGTTCCC+AGG 0.569517 1_1:-53545116 Msa0028560:CDS
ATTCATCAAAACACTCTCCT+GGG 0.571948 1_1:+53545099 None:intergenic
GACAGTCTCTTAGCGCACTC+AGG 0.573098 1_1:+53541308 None:intergenic
TCATATTCCTTCTGATGTCA+AGG 0.575470 1_1:-53545128 Msa0028560:CDS
GAACTTACCTTGACATCAGA+AGG 0.576119 1_1:+53545121 None:intergenic
AAGGGTTTGAAGATGAAAGG+AGG 0.579016 1_1:+53546204 None:intergenic
ACGCTGCGCGTAGATGTAAG+AGG 0.579089 1_1:+53541353 None:intergenic
GAGTTCACGATCCCCATACT+CGG 0.579548 1_1:+53541623 None:intergenic
CTTGAGCGATAATCGGGTGG+TGG 0.580545 1_1:-53544648 Msa0028560:CDS
CGAATATGGGCCGATAGATG+TGG 0.582159 1_1:-53545155 Msa0028560:CDS
CTGTAAGGATACACACGAAG+TGG 0.582972 1_1:+53541564 None:intergenic
ATACTGGTCATTATGAGGAA+GGG 0.584670 1_1:-53542672 Msa0028560:CDS
ATTGTGATGATGATTTGAGA+TGG 0.585528 1_1:-53544229 Msa0028560:CDS
CATGGCTTCAAGTTGAAAGA+GGG 0.586439 1_1:-53545626 Msa0028560:CDS
ACCAGAGTCGGCCAATGCAT+AGG 0.589399 1_1:+53542588 None:intergenic
ATTACAACAGAGTATACAGA+TGG 0.590218 1_1:+53541097 None:intergenic
CAGCAGTTGGCAGTTATGGT+AGG 0.590509 1_1:-53544602 Msa0028560:CDS
CCCCTGTCACTCGACTCGGA+TGG 0.590694 1_1:-53544274 Msa0028560:CDS
GATGCAGCCCTATACATGTA+GGG 0.591178 1_1:+53544161 None:intergenic
ACTCGAGTCATGTTCTTCAC+AGG 0.591802 1_1:-53545374 Msa0028560:CDS
TGGTTGAAATATGAGAAGCA+GGG 0.596245 1_1:-53545220 Msa0028560:CDS
CCTGATGGGCTCGAGTATGG+TGG 0.596465 1_1:+53541754 None:intergenic
CGCGTTATAGAATGTTTGAG+GGG 0.597250 1_1:-53543974 Msa0028560:CDS
AAGCAACAAGCAGAGACTGT+TGG 0.598461 1_1:-53544471 Msa0028560:CDS
ATTATCAGAAGGACACCTCA+AGG 0.599241 1_1:+53542519 None:intergenic
ATGAGGACAGAGAATTCTCA+AGG 0.601625 1_1:-53544134 Msa0028560:CDS
TGGGATGTGTAAGACTCTTG+CGG 0.602911 1_1:-53544436 Msa0028560:CDS
TAGCTCGCAAACTTGACTCA+TGG 0.603131 1_1:+53541214 None:intergenic
AGCTCTAGATAGCTCAGCAA+TGG 0.603255 1_1:+53541399 None:intergenic
AAGAATACCAGATATATATG+TGG 0.606691 1_1:-53540984 Msa0028560:three_prime_UTR
GTTTCGTGCGATGTTAAATG+GGG 0.610029 1_1:-53544987 Msa0028560:CDS
ATAGGGCTGCATCTTTAATG+AGG 0.610370 1_1:-53544151 Msa0028560:CDS
AAAGACTTGTATATGAGGGG+TGG 0.612054 1_1:-53542705 Msa0028560:CDS
TCCATCCGAGTCGAGTGACA+GGG 0.612152 1_1:+53544273 None:intergenic
GAACACGCGCAAGACCCTGA+TGG 0.612717 1_1:+53541739 None:intergenic
TAATCAACCGGTTTAAAGAA+CGG 0.616970 1_1:+53545427 None:intergenic
GGGCACAATTATATGACTGT+TGG 0.617088 1_1:-53543881 Msa0028560:CDS
TATTGAACCAAGACCAGAGT+CGG 0.619309 1_1:+53542576 None:intergenic
CTCTCCGCCATGCTTCGCGG+AGG 0.620798 1_1:+53545278 None:intergenic
TGAGAAGAGATCCGAGTATG+GGG 0.621478 1_1:-53541634 Msa0028560:CDS
CACCATACTCGAGCCCATCA+GGG 0.625478 1_1:-53541753 Msa0028560:CDS
CTTGTAAACAAGAAGCTGCA+AGG 0.625964 1_1:+53544696 None:intergenic
CATGTAGGGATATACAAGAG+TGG 0.626406 1_1:+53544175 None:intergenic
TTTCTGGGAATCGTCGTCTG+AGG 0.626743 1_1:-53544963 Msa0028560:CDS
TACACAAATATGTTTAGATG+CGG 0.628601 1_1:+53540928 None:intergenic
CAGCGTTCCATGAACACAAG+GGG 0.629074 1_1:-53541336 Msa0028560:CDS
CAGAAAGAAAGAAATGAGAA+GGG 0.629586 1_1:+53546186 None:intergenic
TATTCTTAACACATCTCCAA+AGG 0.630781 1_1:+53541000 None:intergenic
CACAAAGGCAGATCTTGAGA+TGG 0.631605 1_1:-53541601 Msa0028560:CDS
CATGAAAGACTTGTATATGA+GGG 0.634711 1_1:-53542709 Msa0028560:CDS
AATGACCAAACTTATCGAGA+AGG 0.635600 1_1:-53541679 Msa0028560:CDS
TCAGATGCTTGAATCTGATG+CGG 0.636780 1_1:-53543820 Msa0028560:CDS
GGTTGAAATATGAGAAGCAG+GGG 0.637522 1_1:-53545219 Msa0028560:CDS
CTGCTTGAGCGATAATCGGG+TGG 0.640329 1_1:-53544651 Msa0028560:CDS
GAGCGAGTTCTGTTCACGAG+AGG 0.642774 1_1:-53545258 Msa0028560:CDS
CCCTCAAACATTCTATAACG+CGG 0.643662 1_1:+53543975 None:intergenic
GGTTTAAAGAACGGTAACAC+AGG 0.645027 1_1:+53545436 None:intergenic
CCTTTGCGCAGATTATCAGA+AGG 0.649315 1_1:+53542508 None:intergenic
ATTTAGGCTAAACTGTCCTG+AGG 0.653337 1_1:-53542779 Msa0028560:intron
ACCAACAACAGAAAGATAGT+GGG 0.654790 1_1:-53546304 Msa0028560:five_prime_UTR
CCTTCTGATAATCTGCGCAA+AGG 0.655235 1_1:-53542508 Msa0028560:CDS
AACCAGTAACAGAATAAACA+TGG 0.659934 1_1:+53544363 None:intergenic
AATCGCTTGAACATCACGAA+GGG 0.661375 1_1:+53544010 None:intergenic
CTTATCGCTCTCATACCCGA+AGG 0.668843 1_1:+53544911 None:intergenic
CTGTCGTGCTGCACTCTCGG+TGG 0.669685 1_1:-53541290 Msa0028560:CDS
GAAGCCTCCGCGAAGCATGG+CGG 0.670703 1_1:-53545282 Msa0028560:CDS
ATGAAAGACTTGTATATGAG+GGG 0.671236 1_1:-53542708 Msa0028560:CDS
CATGCTCAAGCACAAGAGTG+CGG 0.678233 1_1:+53543931 None:intergenic
TGGGGATCGTGAACTCACAA+AGG 0.679605 1_1:-53541616 Msa0028560:CDS
GCAGCGTTCCATGAACACAA+GGG 0.680635 1_1:-53541337 Msa0028560:CDS
CCATCCGAGTCGAGTGACAG+GGG 0.681722 1_1:+53544274 None:intergenic
GCATCAGTTTAACATCACCA+AGG 0.683805 1_1:+53545308 None:intergenic
TTAAAGAACGGTAACACAGG+TGG 0.686583 1_1:+53545439 None:intergenic
CGATTATCGCTCAAGCAGTG+AGG 0.692445 1_1:+53544656 None:intergenic
GAATCGCTTGAACATCACGA+AGG 0.693374 1_1:+53544009 None:intergenic
GCATGTTGAACATTTGACGA+CGG 0.694893 1_1:-53543913 Msa0028560:CDS
TGTAGGGATATACAAGAGTG+GGG 0.708232 1_1:+53544177 None:intergenic
AGCGTTCCATGAACACAAGG+GGG 0.730043 1_1:-53541335 Msa0028560:CDS
ACTGTCCTGAGGCAGCTATG+CGG 0.731322 1_1:-53542768 Msa0028560:CDS
GTTGAAATATGAGAAGCAGG+GGG 0.744146 1_1:-53545218 Msa0028560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATATAAATTACAAAATTT+GGG + chr1_1:53546203-53546222 None:intergenic 10.0%
!! AGAATATAAATTACAAAATT+TGG + chr1_1:53546204-53546223 None:intergenic 10.0%
!!! TTTTTATTTTTTTACTTCTG+TGG - chr1_1:53541249-53541268 Msa0028560:CDS 15.0%
!!! AACAAAACTTTTTATCATTT+TGG + chr1_1:53541349-53541368 None:intergenic 15.0%
!!! TTAGATTATTTTTAAGTTTG+AGG - chr1_1:53541383-53541402 Msa0028560:CDS 15.0%
!!! CAATATGTTGTTTTTATAAT+TGG - chr1_1:53542169-53542188 Msa0028560:intron 15.0%
!! CATATATTTAATCATATAGT+AGG - chr1_1:53543593-53543612 Msa0028560:intron 15.0%
!!! ACTTTAATTTAGGAAAAATA+GGG + chr1_1:53543683-53543702 None:intergenic 15.0%
!!! AACTTTAATTTAGGAAAAAT+AGG + chr1_1:53543684-53543703 None:intergenic 15.0%
!!! ATTGTTTTTGTTTTCTCATA+GGG - chr1_1:53541309-53541328 Msa0028560:CDS 20.0%
!!! AAAGTTTTGTTTTTTCTTTC+TGG - chr1_1:53541358-53541377 Msa0028560:CDS 20.0%
!!! AAGTTTTGTTTTTTCTTTCT+GGG - chr1_1:53541359-53541378 Msa0028560:CDS 20.0%
!!! AAGGTTTGATTTTGAATAAT+AGG - chr1_1:53541472-53541491 Msa0028560:intron 20.0%
!!! AGGTTTGATTTTGAATAATA+GGG - chr1_1:53541473-53541492 Msa0028560:intron 20.0%
!!! TTTCAATATCAGGTTTTTAA+AGG - chr1_1:53541899-53541918 Msa0028560:intron 20.0%
!! AAGGCTGATAAATAAAAATA+AGG - chr1_1:53543637-53543656 Msa0028560:intron 20.0%
!!! TTTAATTTAGGAAAAATAGG+GGG + chr1_1:53543681-53543700 None:intergenic 20.0%
!!! CTTTAATTTAGGAAAAATAG+GGG + chr1_1:53543682-53543701 None:intergenic 20.0%
!!! AAACTCAATTTTAAAATGGA+GGG + chr1_1:53543712-53543731 None:intergenic 20.0%
!!! AAAACTCAATTTTAAAATGG+AGG + chr1_1:53543713-53543732 None:intergenic 20.0%
!!! CCTAAAACTCAATTTTAAAA+TGG + chr1_1:53543716-53543735 None:intergenic 20.0%
!!! CCATTTTAAAATTGAGTTTT+AGG - chr1_1:53543713-53543732 Msa0028560:intron 20.0%
!! AGCAAAAATGACTAAAAATT+TGG - chr1_1:53543900-53543919 Msa0028560:CDS 20.0%
!! AAAAATGACTAAAAATTTGG+CGG - chr1_1:53543903-53543922 Msa0028560:CDS 20.0%
!!! ACTTTAATTTAAGCCAAATA+TGG - chr1_1:53543995-53544014 Msa0028560:CDS 20.0%
!!! CTTTAATTTAAGCCAAATAT+GGG - chr1_1:53543996-53544015 Msa0028560:CDS 20.0%
!!! TTTAATTTAAGCCAAATATG+GGG - chr1_1:53543997-53544016 Msa0028560:CDS 20.0%
!! ATCTGACATTTATATGATTT+AGG - chr1_1:53544435-53544454 Msa0028560:CDS 20.0%
!! CAATAACTGCTAATAAATTT+CGG + chr1_1:53544861-53544880 None:intergenic 20.0%
!!! AGAACTATTTTCATTAGTTT+TGG + chr1_1:53545084-53545103 None:intergenic 20.0%
!! AAATATAACCAACTATACAA+AGG + chr1_1:53545277-53545296 None:intergenic 20.0%
!! GTTAATACTTATTGTATCAA+AGG + chr1_1:53545332-53545351 None:intergenic 20.0%
!!! AAGTATTAACTTAAGAGTTT+TGG - chr1_1:53545342-53545361 Msa0028560:CDS 20.0%
!!! TCATTTTCTAAAAAATGACA+AGG - chr1_1:53545512-53545531 Msa0028560:intron 20.0%
!! TACTTGACAATATGTATATA+TGG - chr1_1:53545763-53545782 Msa0028560:five_prime_UTR 20.0%
!!! ATTGAACTTTGTTTTCTGTT+TGG + chr1_1:53540992-53541011 None:intergenic 25.0%
!!! GTTTTGTTTAGCATCAAATA+AGG + chr1_1:53541145-53541164 None:intergenic 25.0%
!!! GATTGTTTTTGTTTTCTCAT+AGG - chr1_1:53541308-53541327 Msa0028560:CDS 25.0%
!!! TATTTTTAAGTTTGAGGTTG+AGG - chr1_1:53541389-53541408 Msa0028560:CDS 25.0%
!!! ATTTTTAAGTTTGAGGTTGA+GGG - chr1_1:53541390-53541409 Msa0028560:CDS 25.0%
! AATCAAACCTTTACAAATCA+GGG + chr1_1:53541463-53541482 None:intergenic 25.0%
! AAATCAAACCTTTACAAATC+AGG + chr1_1:53541464-53541483 None:intergenic 25.0%
! TTATAGTGAATCTCTAATCA+AGG - chr1_1:53541760-53541779 Msa0028560:CDS 25.0%
! TGAAAACAATATATCTCCTT+CGG - chr1_1:53542303-53542322 Msa0028560:intron 25.0%
!! ATAAGTTATTTCAGTATGAC+TGG - chr1_1:53542337-53542356 Msa0028560:intron 25.0%
! TTGTTGTGATAGATTAAAAG+AGG - chr1_1:53542423-53542442 Msa0028560:intron 25.0%
!! AGGGACTAAAACTTTAATTT+AGG + chr1_1:53543693-53543712 None:intergenic 25.0%
!! CAAAGGAAAATTTTATGATG+TGG + chr1_1:53544300-53544319 None:intergenic 25.0%
! AAGAGTCTATTTGCATTAAA+AGG - chr1_1:53544594-53544613 Msa0028560:CDS 25.0%
! ATTAGAGAAATATTTCCAGA+AGG + chr1_1:53544775-53544794 None:intergenic 25.0%
! CGAAATTTATTAGCAGTTAT+TGG - chr1_1:53544859-53544878 Msa0028560:CDS 25.0%
! ATGTTATCTTACCACAAAAT+TGG + chr1_1:53544925-53544944 None:intergenic 25.0%
!!! TTAACTTGCTAATAAGAAGA+TGG - chr1_1:53544994-53545013 Msa0028560:CDS 25.0%
!!! TAACTTGCTAATAAGAAGAT+GGG - chr1_1:53544995-53545014 Msa0028560:CDS 25.0%
!! TTTGTTCCATTTAATTTACC+AGG - chr1_1:53545371-53545390 Msa0028560:CDS 25.0%
! TAGAAAGGAAAATGATATCA+TGG + chr1_1:53546168-53546187 None:intergenic 25.0%
!! TTTATATTCTTGCTATCCTT+TGG - chr1_1:53546214-53546233 Msa0028560:five_prime_UTR 25.0%
! AAGAATACCAGATATATATG+TGG - chr1_1:53546246-53546265 Msa0028560:five_prime_UTR 25.0%
! TACACAAATATGTTTAGATG+CGG + chr1_1:53546305-53546324 None:intergenic 25.0%
! TATCTTATCTTGAAAAGAAG+AGG + chr1_1:53546330-53546349 None:intergenic 25.0%
!! TTGTTTTCTGTTTGGTGAAA+GGG + chr1_1:53540984-53541003 None:intergenic 30.0%
!! TTTGTTTTCTGTTTGGTGAA+AGG + chr1_1:53540985-53541004 None:intergenic 30.0%
CAGAAAGAAAGAAATGAGAA+GGG + chr1_1:53541047-53541066 None:intergenic 30.0%
! TCAAATGGATACGAAAGTTT+TGG + chr1_1:53541106-53541125 None:intergenic 30.0%
AATAAGGAATATGCAGGAAA+GGG + chr1_1:53541129-53541148 None:intergenic 30.0%
AAATAAGGAATATGCAGGAA+AGG + chr1_1:53541130-53541149 None:intergenic 30.0%
!!! TTTTTGTTTTCTCATAGGGT+AGG - chr1_1:53541313-53541332 Msa0028560:CDS 30.0%
! TAATCAACCGGTTTAAAGAA+CGG + chr1_1:53541806-53541825 None:intergenic 30.0%
AAAACTTCGACATAATCAAC+CGG + chr1_1:53541818-53541837 None:intergenic 30.0%
!! TCTGTTTCTGTTTCAATATC+AGG - chr1_1:53541889-53541908 Msa0028560:intron 30.0%
GTAAACGTCAAAACGAATAT+GGG - chr1_1:53542062-53542081 Msa0028560:intron 30.0%
! TTTTTATAATTGGCGATGAG+AGG - chr1_1:53542179-53542198 Msa0028560:intron 30.0%
GAAAACAATATATCTCCTTC+GGG - chr1_1:53542304-53542323 Msa0028560:intron 30.0%
! AATATCTCCAACAGAAGTTT+TGG + chr1_1:53542385-53542404 None:intergenic 30.0%
TCTATCACAACAATACTTGT+TGG + chr1_1:53542416-53542435 None:intergenic 30.0%
! ATCTTCTTTGGAAGTAACTA+AGG + chr1_1:53542470-53542489 None:intergenic 30.0%
AACCAGTAACAGAATAAACA+TGG + chr1_1:53542870-53542889 None:intergenic 30.0%
CACAATATAGTGATCTTTCT+TGG + chr1_1:53542987-53543006 None:intergenic 30.0%
! ATTGTGATGATGATTTGAGA+TGG - chr1_1:53543001-53543020 Msa0028560:intron 30.0%
TTGTATATCCCTACATGTAT+AGG - chr1_1:53543061-53543080 Msa0028560:intron 30.0%
TGTATATCCCTACATGTATA+GGG - chr1_1:53543062-53543081 Msa0028560:intron 30.0%
TAAACTTTCGTTAGAATGCT+TGG - chr1_1:53543152-53543171 Msa0028560:intron 30.0%
!!! ACTGCGGTTTTTTATATATC+TGG - chr1_1:53543176-53543195 Msa0028560:intron 30.0%
!!! TTTTATATATCTGGCTCTTG+AGG - chr1_1:53543185-53543204 Msa0028560:intron 30.0%
ATTGTCACATCAAAATAGAC+AGG + chr1_1:53543839-53543858 None:intergenic 30.0%
!!! TGTCTATTTTGATGTGACAA+TGG - chr1_1:53543838-53543857 Msa0028560:CDS 30.0%
! TCACTCTGTTTCACAATTTT+CGG + chr1_1:53543941-53543960 None:intergenic 30.0%
!!! TATTTCTAAAACCGGGTTTT+TGG + chr1_1:53543964-53543983 None:intergenic 30.0%
!!! AAAAACCCGGTTTTAGAAAT+AGG - chr1_1:53543963-53543982 Msa0028560:CDS 30.0%
!!! AAAACCCGGTTTTAGAAATA+GGG - chr1_1:53543964-53543983 Msa0028560:CDS 30.0%
!! TTACTTTTGATCCCCATATT+TGG + chr1_1:53544011-53544030 None:intergenic 30.0%
! ATTGAAACTTTTGTATGCCA+TGG - chr1_1:53544403-53544422 Msa0028560:CDS 30.0%
CATGAAAGACTTGTATATGA+GGG - chr1_1:53544521-53544540 Msa0028560:CDS 30.0%
ATGAAAGACTTGTATATGAG+GGG - chr1_1:53544522-53544541 Msa0028560:CDS 30.0%
! AAATAGACTCTTCAGCTTTT+TGG + chr1_1:53544586-53544605 None:intergenic 30.0%
! TTGCATTAAAAGGTCTTTTG+AGG - chr1_1:53544604-53544623 Msa0028560:CDS 30.0%
!!! TTTTGAGGCATTTTTCCTAA+AGG - chr1_1:53544619-53544638 Msa0028560:CDS 30.0%
! CTCGACATTTTCATTGTTTT+CGG - chr1_1:53545102-53545121 Msa0028560:CDS 30.0%
!!! GCTAGTTTTACTTGTTAACA+AGG + chr1_1:53545167-53545186 None:intergenic 30.0%
ACAAAGGCTAACAAGTTTAT+TGG + chr1_1:53545261-53545280 None:intergenic 30.0%
! TTTTGTTGATCATGGAAAAC+TGG - chr1_1:53545416-53545435 Msa0028560:CDS 30.0%
! AAGGGCTTTAATATAGCAAT+CGG + chr1_1:53545451-53545470 None:intergenic 30.0%
TATGAAGTTCCAACATTTCT+TGG + chr1_1:53545976-53545995 None:intergenic 30.0%
ATTACAACAGAGTATACAGA+TGG + chr1_1:53546136-53546155 None:intergenic 30.0%
!! TCATTTTCCTTTCTAAAGAG+AGG - chr1_1:53546173-53546192 Msa0028560:five_prime_UTR 30.0%
TATTCTTAACACATCTCCAA+AGG + chr1_1:53546233-53546252 None:intergenic 30.0%
AAATACATGTATGGTTGTTG+AGG + chr1_1:53546277-53546296 None:intergenic 30.0%
GCGGTAATAAAATACATGTA+TGG + chr1_1:53546286-53546305 None:intergenic 30.0%
ACCAACAACAGAAAGATAGT+GGG - chr1_1:53540926-53540945 Msa0028560:three_prime_UTR 35.0%
GCAGAAAGAAAGAAATGAGA+AGG + chr1_1:53541048-53541067 None:intergenic 35.0%
GCATCAAATAAGGAATATGC+AGG + chr1_1:53541135-53541154 None:intergenic 35.0%
! AATAGTGGAATGTGACTAGT+AGG - chr1_1:53541414-53541433 Msa0028560:CDS 35.0%
! TCTTTGACCCTGATTTGTAA+AGG - chr1_1:53541453-53541472 Msa0028560:intron 35.0%
! GAATAATAGGGTTGTTGTTG+TGG - chr1_1:53541485-53541504 Msa0028560:intron 35.0%
CATTGAAGAAAGTCCTCATA+GGG + chr1_1:53541539-53541558 None:intergenic 35.0%
AGAACTTAAGTGCTCTTCTT+TGG + chr1_1:53541571-53541590 None:intergenic 35.0%
GTTCTCTTAATCCACAATCA+TGG - chr1_1:53541586-53541605 Msa0028560:CDS 35.0%
GAGGATTGTGATGACAATTT+GGG + chr1_1:53541636-53541655 None:intergenic 35.0%
AGAGGATTGTGATGACAATT+TGG + chr1_1:53541637-53541656 None:intergenic 35.0%
ATCTTACATTGATGCAGAAG+AGG + chr1_1:53541655-53541674 None:intergenic 35.0%
TGTGTTACCGTTCTTTAAAC+CGG - chr1_1:53541796-53541815 Msa0028560:CDS 35.0%
!! TATCAGGTTTTTAAAGGCCT+TGG - chr1_1:53541905-53541924 Msa0028560:intron 35.0%
TTCACGAGAGGATTGTATTT+GGG - chr1_1:53541984-53542003 Msa0028560:intron 35.0%
ATGGTTGAAATATGAGAAGC+AGG - chr1_1:53542009-53542028 Msa0028560:intron 35.0%
TGGTTGAAATATGAGAAGCA+GGG - chr1_1:53542010-53542029 Msa0028560:intron 35.0%
GGTAAACGTCAAAACGAATA+TGG - chr1_1:53542061-53542080 Msa0028560:intron 35.0%
ATATGAGACTCCACATCTAT+CGG + chr1_1:53542088-53542107 None:intergenic 35.0%
TCATATTCCTTCTGATGTCA+AGG - chr1_1:53542102-53542121 Msa0028560:intron 35.0%
ATTCATCAAAACACTCTCCT+GGG + chr1_1:53542134-53542153 None:intergenic 35.0%
!!! AGGAGAGTGTTTTGATGAAT+GGG - chr1_1:53542134-53542153 Msa0028560:intron 35.0%
GATGTTAAATGGGGATTTCT+GGG - chr1_1:53542252-53542271 Msa0028560:intron 35.0%
TTGTGTCTGAACTAGAGTTA+AGG + chr1_1:53542702-53542721 None:intergenic 35.0%
!! TTTGAGAGCGCTGTAAATAA+TGG - chr1_1:53542844-53542863 Msa0028560:intron 35.0%
TGACTCTATAAAAGGTGAGA+AGG - chr1_1:53542900-53542919 Msa0028560:intron 35.0%
ATGTAGGGATATACAAGAGT+GGG + chr1_1:53543057-53543076 None:intergenic 35.0%
GCTGAAATTAATCGGATACT+TGG - chr1_1:53543126-53543145 Msa0028560:intron 35.0%
ATAAGGCTTAGATGCATTTC+TGG - chr1_1:53543654-53543673 Msa0028560:intron 35.0%
ATCCTGAAAGTTGTGAAACA+GGG + chr1_1:53543742-53543761 None:intergenic 35.0%
AATCCTGAAAGTTGTGAAAC+AGG + chr1_1:53543743-53543762 None:intergenic 35.0%
AATGACTAAAAATTTGGCGG+TGG - chr1_1:53543906-53543925 Msa0028560:CDS 35.0%
! CACTCTGTTTCACAATTTTC+GGG + chr1_1:53543940-53543959 None:intergenic 35.0%
!!! AAACCCGGTTTTAGAAATAG+GGG - chr1_1:53543965-53543984 Msa0028560:CDS 35.0%
GAATTCTACACGTACATAAC+AGG + chr1_1:53544071-53544090 None:intergenic 35.0%
CACTCTTCAAACTTAAGTGT+CGG + chr1_1:53544121-53544140 None:intergenic 35.0%
!! ACTTAAGTTTGAAGAGTGTC+TGG - chr1_1:53544123-53544142 Msa0028560:CDS 35.0%
TTGAATGTAGCCACATGTAT+TGG + chr1_1:53544162-53544181 None:intergenic 35.0%
TACTTACACAGACACAAACA+CGG + chr1_1:53544236-53544255 None:intergenic 35.0%
TCTCTATCAAAACAACCACA+AGG - chr1_1:53544265-53544284 Msa0028560:CDS 35.0%
! ATGTGGATTTTTACTCCTTG+TGG + chr1_1:53544283-53544302 None:intergenic 35.0%
TGTCAGATTCATTTACTCCA+TGG + chr1_1:53544423-53544442 None:intergenic 35.0%
GCATGAAAGACTTGTATATG+AGG - chr1_1:53544520-53544539 Msa0028560:CDS 35.0%
GTATGATACTGGTCATTATG+AGG - chr1_1:53544553-53544572 Msa0028560:CDS 35.0%
ATACTGGTCATTATGAGGAA+GGG - chr1_1:53544558-53544577 Msa0028560:CDS 35.0%
! TTTTCTATTGTACCACCTTC+TGG - chr1_1:53544757-53544776 Msa0028560:CDS 35.0%
AGAGAAATATTTCCAGAAGG+TGG + chr1_1:53544772-53544791 None:intergenic 35.0%
! TTGTAGAAGTTCTGATGTGT+AGG - chr1_1:53544887-53544906 Msa0028560:CDS 35.0%
! TCTAGGTAACACCAATTTTG+TGG - chr1_1:53544911-53544930 Msa0028560:CDS 35.0%
TTTGTGGTAAGATAACATGC+AGG - chr1_1:53544927-53544946 Msa0028560:CDS 35.0%
TTGTGGTAAGATAACATGCA+GGG - chr1_1:53544928-53544947 Msa0028560:CDS 35.0%
! ATGTTTTCACAAAGCAAACG+AGG - chr1_1:53545214-53545233 Msa0028560:CDS 35.0%
GGTATTAATACATTCTGCCA+AGG + chr1_1:53545240-53545259 None:intergenic 35.0%
!! CTTGTTAGCCTTTGTATAGT+TGG - chr1_1:53545266-53545285 Msa0028560:CDS 35.0%
TGTAGCATCACATCATTTCT+AGG - chr1_1:53545296-53545315 Msa0028560:CDS 35.0%
AACACTTCCAAGATTGTTCA+GGG + chr1_1:53545397-53545416 None:intergenic 35.0%
AAACACTTCCAAGATTGTTC+AGG + chr1_1:53545398-53545417 None:intergenic 35.0%
!!! GGAAGTGTTTTTGTTGATCA+TGG - chr1_1:53545408-53545427 Msa0028560:CDS 35.0%
!!! TCGAGTATGGTGGATTTTAA+GGG + chr1_1:53545469-53545488 None:intergenic 35.0%
AATGACCAAACTTATCGAGA+AGG - chr1_1:53545551-53545570 Msa0028560:intron 35.0%
! TTTTGCCTTCTCGATAAGTT+TGG + chr1_1:53545559-53545578 None:intergenic 35.0%
!!! CAGCAGGTTGATATTTTTAC+TGG - chr1_1:53545697-53545716 Msa0028560:exon 35.0%
!! GGTTGATATTTTTACTGGAG+TGG - chr1_1:53545702-53545721 Msa0028560:exon 35.0%
!! GAATGTGATTGCAGTTTTGA+TGG - chr1_1:53545787-53545806 Msa0028560:five_prime_UTR 35.0%
!! AGTTTTGATGGACAACCATA+AGG - chr1_1:53545799-53545818 Msa0028560:five_prime_UTR 35.0%
GGATAAGCCACATATATATC+TGG + chr1_1:53546256-53546275 None:intergenic 35.0%
AATAGTGGCTGCAACTTCTA+TGG - chr1_1:53540893-53540912 Msa0028560:three_prime_UTR 40.0%
TCTTTCTGTTGTTGGTGTGT+TGG + chr1_1:53540922-53540941 None:intergenic 40.0%
CACCAACAACAGAAAGATAG+TGG - chr1_1:53540925-53540944 Msa0028560:three_prime_UTR 40.0%
TCCCACTATCTTTCTGTTGT+TGG + chr1_1:53540930-53540949 None:intergenic 40.0%
AAGGGTTTGAAGATGAAAGG+AGG + chr1_1:53541029-53541048 None:intergenic 40.0%
GAGAAGGGTTTGAAGATGAA+AGG + chr1_1:53541032-53541051 None:intergenic 40.0%
!!! TGGATACGAAAGTTTTGGCT+AGG + chr1_1:53541101-53541120 None:intergenic 40.0%
ATATGCAGGAAAGGGTCAAA+TGG + chr1_1:53541121-53541140 None:intergenic 40.0%
! TTTGAGGTTGAGGGTAATAG+TGG - chr1_1:53541399-53541418 Msa0028560:CDS 40.0%
TTCGTGTATTATGCCCTATG+AGG - chr1_1:53541523-53541542 Msa0028560:intron 40.0%
CCATTGAAGAAAGTCCTCAT+AGG + chr1_1:53541540-53541559 None:intergenic 40.0%
CCTATGAGGACTTTCTTCAA+TGG - chr1_1:53541537-53541556 Msa0028560:intron 40.0%
TCAACTTGAAGCCATGATTG+TGG + chr1_1:53541600-53541619 None:intergenic 40.0%
!! TCATGGCTTCAAGTTGAAAG+AGG - chr1_1:53541603-53541622 Msa0028560:CDS 40.0%
!! CATGGCTTCAAGTTGAAAGA+GGG - chr1_1:53541604-53541623 Msa0028560:CDS 40.0%
TTAAAGAACGGTAACACAGG+TGG + chr1_1:53541794-53541813 None:intergenic 40.0%
GGTTTAAAGAACGGTAACAC+AGG + chr1_1:53541797-53541816 None:intergenic 40.0%
AACATGACTCGAGTTCTTCA+TGG + chr1_1:53541850-53541869 None:intergenic 40.0%
GCATCAGTTTAACATCACCA+AGG + chr1_1:53541925-53541944 None:intergenic 40.0%
GTTCACGAGAGGATTGTATT+TGG - chr1_1:53541983-53542002 Msa0028560:intron 40.0%
TCACGAGAGGATTGTATTTG+GGG - chr1_1:53541985-53542004 Msa0028560:intron 40.0%
GGTTGAAATATGAGAAGCAG+GGG - chr1_1:53542011-53542030 Msa0028560:intron 40.0%
GTTGAAATATGAGAAGCAGG+GGG - chr1_1:53542012-53542031 Msa0028560:intron 40.0%
GAACTTACCTTGACATCAGA+AGG + chr1_1:53542112-53542131 None:intergenic 40.0%
CATTCATCAAAACACTCTCC+TGG + chr1_1:53542135-53542154 None:intergenic 40.0%
!!! CAGGAGAGTGTTTTGATGAA+TGG - chr1_1:53542133-53542152 Msa0028560:intron 40.0%
CCATTTAACATCGCACGAAA+CGG + chr1_1:53542244-53542263 None:intergenic 40.0%
CGTTTCGTGCGATGTTAAAT+GGG - chr1_1:53542242-53542261 Msa0028560:intron 40.0%
GTTTCGTGCGATGTTAAATG+GGG - chr1_1:53542243-53542262 Msa0028560:intron 40.0%
CGATGTTAAATGGGGATTTC+TGG - chr1_1:53542251-53542270 Msa0028560:intron 40.0%
AGTCTCTCCAAAACTTCTGT+TGG - chr1_1:53542375-53542394 Msa0028560:intron 40.0%
GAGTTCGATAGCATCTTCTT+TGG + chr1_1:53542482-53542501 None:intergenic 40.0%
AGAAGATGCTATCGAACTCA+TGG - chr1_1:53542483-53542502 Msa0028560:intron 40.0%
CTTGTAAACAAGAAGCTGCA+AGG + chr1_1:53542537-53542556 None:intergenic 40.0%
AGTGAGGAAGATCACGTAAA+AGG + chr1_1:53542561-53542580 None:intergenic 40.0%
TCATGCTAATAAGCAGCAGT+TGG - chr1_1:53542615-53542634 Msa0028560:CDS 40.0%
! AGACACAACAGCTCATTTTC+TGG - chr1_1:53542714-53542733 Msa0028560:CDS 40.0%
!! CAACAGCTCATTTTCTGGAA+AGG - chr1_1:53542719-53542738 Msa0028560:CDS 40.0%
TACACATCCCAAACGATGAA+AGG + chr1_1:53542785-53542804 None:intergenic 40.0%
GGCCATGTTTATTCTGTTAC+TGG - chr1_1:53542865-53542884 Msa0028560:intron 40.0%
! GCTCGACTTGACTCTATAAA+AGG - chr1_1:53542892-53542911 Msa0028560:intron 40.0%
! CAAGTTCAGTTGCTTTCTCA+AGG + chr1_1:53543032-53543051 None:intergenic 40.0%
TGTAGGGATATACAAGAGTG+GGG + chr1_1:53543056-53543075 None:intergenic 40.0%
CATGTAGGGATATACAAGAG+TGG + chr1_1:53543058-53543077 None:intergenic 40.0%
ATAGGGCTGCATCTTTAATG+AGG - chr1_1:53543079-53543098 Msa0028560:intron 40.0%
ATGAGGACAGAGAATTCTCA+AGG - chr1_1:53543096-53543115 Msa0028560:intron 40.0%
!! GTGCACTGGCTGAAATTAAT+CGG - chr1_1:53543118-53543137 Msa0028560:intron 40.0%
AATCGCTTGAACATCACGAA+GGG + chr1_1:53543223-53543242 None:intergenic 40.0%
TCCGCGTTATAGAATGTTTG+AGG - chr1_1:53543254-53543273 Msa0028560:intron 40.0%
CCCTCAAACATTCTATAACG+CGG + chr1_1:53543258-53543277 None:intergenic 40.0%
CCGCGTTATAGAATGTTTGA+GGG - chr1_1:53543255-53543274 Msa0028560:intron 40.0%
CGCGTTATAGAATGTTTGAG+GGG - chr1_1:53543256-53543275 Msa0028560:intron 40.0%
GCATGTTGAACATTTGACGA+CGG - chr1_1:53543317-53543336 Msa0028560:intron 40.0%
GGGCACAATTATATGACTGT+TGG - chr1_1:53543349-53543368 Msa0028560:intron 40.0%
TCAGATGCTTGAATCTGATG+CGG - chr1_1:53543410-53543429 Msa0028560:intron 40.0%
ATTCACTCACATCATACCTG+AGG + chr1_1:53543473-53543492 None:intergenic 40.0%
GTATGATGTGAGTGAATGTG+TGG - chr1_1:53543476-53543495 Msa0028560:intron 40.0%
TAACTCCACTGTTGAACCTT+AGG - chr1_1:53543537-53543556 Msa0028560:intron 40.0%
AACTCCACTGTTGAACCTTA+GGG - chr1_1:53543538-53543557 Msa0028560:intron 40.0%
TATTCCCTAAGGTTCAACAG+TGG + chr1_1:53543545-53543564 None:intergenic 40.0%
ACTGTTGAACCTTAGGGAAT+AGG - chr1_1:53543544-53543563 Msa0028560:intron 40.0%
TCAGAACATCCTATTCCCTA+AGG + chr1_1:53543556-53543575 None:intergenic 40.0%
AGGGAATAGGATGTTCTGAT+TGG - chr1_1:53543557-53543576 Msa0028560:intron 40.0%
TCGCAAGTTCATGACTAAGA+AGG - chr1_1:53543618-53543637 Msa0028560:intron 40.0%
TGGCATTGTCATTAATGACG+TGG - chr1_1:53543802-53543821 Msa0028560:CDS 40.0%
TTGCTGATGTGACAATGAAG+TGG + chr1_1:53543885-53543904 None:intergenic 40.0%
AAACAGAGTGACCAAAAACC+CGG - chr1_1:53543950-53543969 Msa0028560:CDS 40.0%
!!! AACCCGGTTTTAGAAATAGG+GGG - chr1_1:53543966-53543985 Msa0028560:CDS 40.0%
!! AGTCCCCCTATTTCTAAAAC+CGG + chr1_1:53543972-53543991 None:intergenic 40.0%
TACACGTACATAACAGGAAG+AGG + chr1_1:53544065-53544084 None:intergenic 40.0%
GTTTCAGACACCAATACATG+TGG - chr1_1:53544149-53544168 Msa0028560:CDS 40.0%
ACGTAAAGCTTGGATCTCAA+AGG + chr1_1:53544317-53544336 None:intergenic 40.0%
AATGCATATTCTCCTGCTTG+AGG - chr1_1:53544354-53544373 Msa0028560:CDS 40.0%
ATGAAAGAAGATCCTCAAGC+AGG + chr1_1:53544369-53544388 None:intergenic 40.0%
ATTTAGGCTAAACTGTCCTG+AGG - chr1_1:53544451-53544470 Msa0028560:CDS 40.0%
AAAGACTTGTATATGAGGGG+TGG - chr1_1:53544525-53544544 Msa0028560:CDS 40.0%
!! GGGTGGATTTTGTATGATAC+TGG - chr1_1:53544542-53544561 Msa0028560:CDS 40.0%
GATACTGGTCATTATGAGGA+AGG - chr1_1:53544557-53544576 Msa0028560:CDS 40.0%
TTTCCTAAAGGCCTATGCAT+TGG - chr1_1:53544631-53544650 Msa0028560:CDS 40.0%
TATTGAACCAAGACCAGAGT+CGG + chr1_1:53544657-53544676 None:intergenic 40.0%
ATTATCAGAAGGACACCTCA+AGG + chr1_1:53544714-53544733 None:intergenic 40.0%
AACAATCAGTTACCACACAC+AGG - chr1_1:53544796-53544815 Msa0028560:CDS 40.0%
GTTTGTACTTAACCTGTGTG+TGG + chr1_1:53544811-53544830 None:intergenic 40.0%
TGTGGTAAGATAACATGCAG+GGG - chr1_1:53544929-53544948 Msa0028560:CDS 40.0%
! AGATAACATGCAGGGGTATA+AGG - chr1_1:53544936-53544955 Msa0028560:CDS 40.0%
TACGAAGTCAGTCAATGTGA+TGG - chr1_1:53545023-53545042 Msa0028560:CDS 40.0%
TCAGGGCCTGGTAAATTAAA+TGG + chr1_1:53545380-53545399 None:intergenic 40.0%
TAATATAGCAATCGGCTGCT+TGG + chr1_1:53545443-53545462 None:intergenic 40.0%
!!! CTCGAGTATGGTGGATTTTA+AGG + chr1_1:53545470-53545489 None:intergenic 40.0%
GAAGGCAAAAAACAATGCGT+CGG - chr1_1:53545569-53545588 Msa0028560:intron 40.0%
TATGAGAAGAGATCCGAGTA+TGG - chr1_1:53545594-53545613 Msa0028560:CDS 40.0%
ATGAGAAGAGATCCGAGTAT+GGG - chr1_1:53545595-53545614 Msa0028560:CDS 40.0%
! CCAACATTTCTTGGTGGTTT+GGG + chr1_1:53545967-53545986 None:intergenic 40.0%
! TCCAACATTTCTTGGTGGTT+TGG + chr1_1:53545968-53545987 None:intergenic 40.0%
GAAGTTCCAACATTTCTTGG+TGG + chr1_1:53545973-53545992 None:intergenic 40.0%
GCTGATGATTGTACAAATGC+TGG + chr1_1:53546057-53546076 None:intergenic 40.0%
! GGTTGTTGTTGTGGAGATCT+GGG - chr1_1:53541494-53541513 Msa0028560:intron 45.0%
ACTCGAGTCATGTTCTTCAC+AGG - chr1_1:53541856-53541875 Msa0028560:intron 45.0%
! AGAGGATTGTATTTGGGGCA+TGG - chr1_1:53541990-53542009 Msa0028560:intron 45.0%
!! CTAGTTGCTGGTTTGTTGAC+TGG - chr1_1:53542040-53542059 Msa0028560:intron 45.0%
TGATGTCAAGGTAAGTTCCC+AGG - chr1_1:53542114-53542133 Msa0028560:intron 45.0%
CCGTTTCGTGCGATGTTAAA+TGG - chr1_1:53542241-53542260 Msa0028560:intron 45.0%
CTCACTGCTTGAGCGATAAT+CGG - chr1_1:53542575-53542594 Msa0028560:CDS 45.0%
TCACTGCTTGAGCGATAATC+GGG - chr1_1:53542576-53542595 Msa0028560:CDS 45.0%
TAAGCAGCAGTTGGCAGTTA+TGG - chr1_1:53542624-53542643 Msa0028560:CDS 45.0%
TTGGCAGTTATGGTAGGTCA+AGG - chr1_1:53542634-53542653 Msa0028560:CDS 45.0%
AAGCAACAAGCAGAGACTGT+TGG - chr1_1:53542759-53542778 Msa0028560:CDS 45.0%
!! ACTGTTGGCCTTTCATCGTT+TGG - chr1_1:53542774-53542793 Msa0028560:CDS 45.0%
!! CTGTTGGCCTTTCATCGTTT+GGG - chr1_1:53542775-53542794 Msa0028560:CDS 45.0%
TGGGATGTGTAAGACTCTTG+CGG - chr1_1:53542794-53542813 Msa0028560:intron 45.0%
GATGCAGCCCTATACATGTA+GGG + chr1_1:53543072-53543091 None:intergenic 45.0%
AGATGCAGCCCTATACATGT+AGG + chr1_1:53543073-53543092 None:intergenic 45.0%
AGAGAATTCTCAAGGTGCAC+TGG - chr1_1:53543104-53543123 Msa0028560:intron 45.0%
CGTTAGAATGCTTGGAACTG+CGG - chr1_1:53543160-53543179 Msa0028560:intron 45.0%
GAATCGCTTGAACATCACGA+AGG + chr1_1:53543224-53543243 None:intergenic 45.0%
ATTTGACGACGGCAGATTGT+TGG - chr1_1:53543328-53543347 Msa0028560:intron 45.0%
TTTGACGACGGCAGATTGTT+GGG - chr1_1:53543329-53543348 Msa0028560:intron 45.0%
CTTGAATCTGATGCGGCAAA+AGG - chr1_1:53543417-53543436 Msa0028560:intron 45.0%
TGCCCTGTTTCACAACTTTC+AGG - chr1_1:53543737-53543756 Msa0028560:intron 45.0%
AGCGAAAGAACTCCAGCATT+GGG + chr1_1:53543778-53543797 None:intergenic 45.0%
!! GTCCCCCTATTTCTAAAACC+GGG + chr1_1:53543971-53543990 None:intergenic 45.0%
GAGATCCAAGCTTTACGTCT+TGG - chr1_1:53544319-53544338 Msa0028560:CDS 45.0%
GTACTCCAAGACGTAAAGCT+TGG + chr1_1:53544327-53544346 None:intergenic 45.0%
TGCGGAGTTTACAGTTAGCT+TGG - chr1_1:53544480-53544499 Msa0028560:CDS 45.0%
CCTTTGCGCAGATTATCAGA+AGG + chr1_1:53544725-53544744 None:intergenic 45.0%
CCTTCTGATAATCTGCGCAA+AGG - chr1_1:53544722-53544741 Msa0028560:CDS 45.0%
TGATAATCTGCGCAAAGGTC+AGG - chr1_1:53544727-53544746 Msa0028560:CDS 45.0%
! AGTTCTGATGTGTAGGCTCT+AGG - chr1_1:53544894-53544913 Msa0028560:CDS 45.0%
! GTCAATGTGATGGAGAGAAG+AGG - chr1_1:53545033-53545052 Msa0028560:CDS 45.0%
!! AGAAGAGGAAGTGCTAGCTA+GGG - chr1_1:53545048-53545067 Msa0028560:CDS 45.0%
TGAGAAGAGATCCGAGTATG+GGG - chr1_1:53545596-53545615 Msa0028560:CDS 45.0%
CACAAAGGCAGATCTTGAGA+TGG - chr1_1:53545629-53545648 Msa0028560:CDS 45.0%
CTGTAAGGATACACACGAAG+TGG + chr1_1:53545669-53545688 None:intergenic 45.0%
GATGGACAACCATAAGGAAC+TGG - chr1_1:53545805-53545824 Msa0028560:five_prime_UTR 45.0%
CAATGGCTTCCAGTTCCTTA+TGG + chr1_1:53545817-53545836 None:intergenic 45.0%
!! AGCTCTAGATAGCTCAGCAA+TGG + chr1_1:53545834-53545853 None:intergenic 45.0%
CCCAAACCACCAAGAAATGT+TGG - chr1_1:53545964-53545983 Msa0028560:five_prime_UTR 45.0%
CAAACTTGACTCATGGTTCG+TGG + chr1_1:53546012-53546031 None:intergenic 45.0%
TAGCTCGCAAACTTGACTCA+TGG + chr1_1:53546019-53546038 None:intergenic 45.0%
AGTCAAGTTTGCGAGCTATG+AGG - chr1_1:53546021-53546040 Msa0028560:five_prime_UTR 45.0%
! GGGCATTCCTCTCTTTAGAA+AGG + chr1_1:53546183-53546202 None:intergenic 45.0%
!! AAATAAAAAATAAGATTAAT+GGG + chr1_1:53541238-53541257 None:intergenic 5.0%
!! AAAATAAAAAATAAGATTAA+TGG + chr1_1:53541239-53541258 None:intergenic 5.0%
!!! AAAAAAAAAAAACTATTTTT+AGG + chr1_1:53544041-53544060 None:intergenic 5.0%
! GGGTTGTTGTTGTGGAGATC+TGG - chr1_1:53541493-53541512 Msa0028560:intron 50.0%
CGAATATGGGCCGATAGATG+TGG - chr1_1:53542075-53542094 Msa0028560:intron 50.0%
! TTTCTGGGAATCGTCGTCTG+AGG - chr1_1:53542267-53542286 Msa0028560:intron 50.0%
CTTATCGCTCTCATACCCGA+AGG + chr1_1:53542322-53542341 None:intergenic 50.0%
CGATTATCGCTCAAGCAGTG+AGG + chr1_1:53542577-53542596 None:intergenic 50.0%
CAGCAGTTGGCAGTTATGGT+AGG - chr1_1:53542628-53542647 Msa0028560:CDS 50.0%
ATTTCCCCTGTCACTCGACT+CGG - chr1_1:53542952-53542971 Msa0028560:intron 50.0%
CATGCTCAAGCACAAGAGTG+CGG + chr1_1:53543302-53543321 None:intergenic 50.0%
GACAGTCATTGCTTCTCCTC+AGG - chr1_1:53543454-53543473 Msa0028560:intron 50.0%
CAGCGAAAGAACTCCAGCAT+TGG + chr1_1:53543779-53543798 None:intergenic 50.0%
CTGGAGTTCTTTCGCTGATG+TGG - chr1_1:53543782-53543801 Msa0028560:CDS 50.0%
CACTTCTCGAAGATGCCTTG+AGG - chr1_1:53544696-53544715 Msa0028560:CDS 50.0%
ATCTGCGCAAAGGTCAGGTA+CGG - chr1_1:53544732-53544751 Msa0028560:CDS 50.0%
!! GAGAAGAGGAAGTGCTAGCT+AGG - chr1_1:53545047-53545066 Msa0028560:CDS 50.0%
TCACAAAGCAAACGAGGCCT+TGG - chr1_1:53545220-53545239 Msa0028560:CDS 50.0%
TACCAGGCCCTGAACAATCT+TGG - chr1_1:53545387-53545406 Msa0028560:CDS 50.0%
TTCCAAGATTGTTCAGGGCC+TGG + chr1_1:53545392-53545411 None:intergenic 50.0%
! TGACAAGGCTGCTGCTTACA+AGG - chr1_1:53545527-53545546 Msa0028560:intron 50.0%
GAGTTCACGATCCCCATACT+CGG + chr1_1:53545610-53545629 None:intergenic 50.0%
TGGGGATCGTGAACTCACAA+AGG - chr1_1:53545614-53545633 Msa0028560:CDS 50.0%
CCTGCTGCTCGATATCTGTA+AGG + chr1_1:53545684-53545703 None:intergenic 50.0%
CCTTACAGATATCGAGCAGC+AGG - chr1_1:53545681-53545700 Msa0028560:CDS 50.0%
GCAGCGTTCCATGAACACAA+GGG - chr1_1:53545893-53545912 Msa0028560:five_prime_UTR 50.0%
CAGCGTTCCATGAACACAAG+GGG - chr1_1:53545894-53545913 Msa0028560:five_prime_UTR 50.0%
AGCGTTCCATGAACACAAGG+GGG - chr1_1:53545895-53545914 Msa0028560:five_prime_UTR 50.0%
ACGGTAACACAGGTGGCTGT+TGG + chr1_1:53541787-53541806 None:intergenic 55.0%
AAAGAAGCCTCCGCGAAGCA+TGG - chr1_1:53541945-53541964 Msa0028560:intron 55.0%
GAGCGAGTTCTGTTCACGAG+AGG - chr1_1:53541972-53541991 Msa0028560:intron 55.0%
CAGGGGGAAGAACTAGTTGC+TGG - chr1_1:53542028-53542047 Msa0028560:intron 55.0%
CTGCTTGAGCGATAATCGGG+TGG - chr1_1:53542579-53542598 Msa0028560:CDS 55.0%
CTTGAGCGATAATCGGGTGG+TGG - chr1_1:53542582-53542601 Msa0028560:CDS 55.0%
TCCATCCGAGTCGAGTGACA+GGG + chr1_1:53542960-53542979 None:intergenic 55.0%
ATCCATCCGAGTCGAGTGAC+AGG + chr1_1:53542961-53542980 None:intergenic 55.0%
CACAGACACAAACACGGCAC+TGG + chr1_1:53544230-53544249 None:intergenic 55.0%
ACTGTCCTGAGGCAGCTATG+CGG - chr1_1:53544462-53544481 Msa0028560:CDS 55.0%
AAACTCCGCATAGCTGCCTC+AGG + chr1_1:53544470-53544489 None:intergenic 55.0%
CGGCCAATGCATAGGCCTTT+AGG + chr1_1:53544637-53544656 None:intergenic 55.0%
ACCAGAGTCGGCCAATGCAT+AGG + chr1_1:53544645-53544664 None:intergenic 55.0%
!! AGAGGAAGTGCTAGCTAGGG+AGG - chr1_1:53545051-53545070 Msa0028560:CDS 55.0%
CACCATACTCGAGCCCATCA+GGG - chr1_1:53545477-53545496 Msa0028560:intron 55.0%
AACACGCGCAAGACCCTGAT+GGG + chr1_1:53545493-53545512 None:intergenic 55.0%
ACGCTGCGCGTAGATGTAAG+AGG + chr1_1:53545880-53545899 None:intergenic 55.0%
CGCAGCGTTCCATGAACACA+AGG - chr1_1:53545892-53545911 Msa0028560:five_prime_UTR 55.0%
GGACATCCCCCTTGTGTTCA+TGG + chr1_1:53545904-53545923 None:intergenic 55.0%
GACAGTCTCTTAGCGCACTC+AGG + chr1_1:53545925-53545944 None:intergenic 55.0%
AGACTGTCGTGCTGCACTCT+CGG - chr1_1:53545937-53545956 Msa0028560:five_prime_UTR 55.0%
CCATCCGAGTCGAGTGACAG+GGG + chr1_1:53542959-53542978 None:intergenic 60.0%
TTCCACCTCGCACCCAATGC+TGG - chr1_1:53543763-53543782 Msa0028560:intron 60.0%
! GAACTCCAGCATTGGGTGCG+AGG + chr1_1:53543771-53543790 None:intergenic 60.0%
! GCCTATGCATTGGCCGACTC+TGG - chr1_1:53544641-53544660 Msa0028560:CDS 60.0%
! GCATTGGCCGACTCTGGTCT+TGG - chr1_1:53544647-53544666 Msa0028560:CDS 60.0%
!! CCTGATGGGCTCGAGTATGG+TGG + chr1_1:53545479-53545498 None:intergenic 60.0%
CCACCATACTCGAGCCCATC+AGG - chr1_1:53545476-53545495 Msa0028560:intron 60.0%
!! GACCCTGATGGGCTCGAGTA+TGG + chr1_1:53545482-53545501 None:intergenic 60.0%
GAACACGCGCAAGACCCTGA+TGG + chr1_1:53545494-53545513 None:intergenic 60.0%
GAAGCCTCCGCGAAGCATGG+CGG - chr1_1:53541948-53541967 Msa0028560:intron 65.0%
TCGCTCTCCGCCATGCTTCG+CGG + chr1_1:53541958-53541977 None:intergenic 65.0%
!! CCCCTGTCACTCGACTCGGA+TGG - chr1_1:53542956-53542975 Msa0028560:intron 65.0%
! CTCCAGCATTGGGTGCGAGG+TGG + chr1_1:53543768-53543787 None:intergenic 65.0%
CTGTCGTGCTGCACTCTCGG+TGG - chr1_1:53545940-53545959 Msa0028560:five_prime_UTR 65.0%
CTCTCCGCCATGCTTCGCGG+AGG + chr1_1:53541955-53541974 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 53540888 53546364 53540888 ID=Msa0028560;Name=Msa0028560
chr1_1 mRNA 53540888 53546364 53540888 ID=Msa0028560-mRNA-1;Parent=Msa0028560;Name=Msa0028560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=652|1|1|1|1|1|5|343|886
chr1_1 exon 53540888 53541451 53540888 ID=Msa0028560-mRNA-1:exon:15776;Parent=Msa0028560-mRNA-1
chr1_1 exon 53541550 53541859 53541550 ID=Msa0028560-mRNA-1:exon:15775;Parent=Msa0028560-mRNA-1
chr1_1 exon 53542504 53542795 53542504 ID=Msa0028560-mRNA-1:exon:15774;Parent=Msa0028560-mRNA-1
chr1_1 exon 53543777 53545486 53543777 ID=Msa0028560-mRNA-1:exon:15773;Parent=Msa0028560-mRNA-1
chr1_1 exon 53545585 53546364 53545585 ID=Msa0028560-mRNA-1:exon:15772;Parent=Msa0028560-mRNA-1
chr1_1 five_prime_UTR 53545713 53546364 53545713 ID=Msa0028560-mRNA-1:five_prime_utr;Parent=Msa0028560-mRNA-1
chr1_1 CDS 53545585 53545712 53545585 ID=Msa0028560-mRNA-1:cds;Parent=Msa0028560-mRNA-1
chr1_1 CDS 53543777 53545486 53543777 ID=Msa0028560-mRNA-1:cds;Parent=Msa0028560-mRNA-1
chr1_1 CDS 53542504 53542795 53542504 ID=Msa0028560-mRNA-1:cds;Parent=Msa0028560-mRNA-1
chr1_1 CDS 53541550 53541859 53541550 ID=Msa0028560-mRNA-1:cds;Parent=Msa0028560-mRNA-1
chr1_1 CDS 53541231 53541451 53541231 ID=Msa0028560-mRNA-1:cds;Parent=Msa0028560-mRNA-1
chr1_1 three_prime_UTR 53540888 53541230 53540888 ID=Msa0028560-mRNA-1:three_prime_utr;Parent=Msa0028560-mRNA-1
Gene Sequence

>Msa0028560

ATGAGGACTTTCTTCAATGGAGAATCATCCAAAGAAGAGCACTTAAGTTCTCTTAATCCACAATCATGGCTTCAAGTTGAAAGAGGGAAGCTTCCCAAATTGTCATCACAATCCTCTTCTGCATCAATTGAATCTCTAATCAAGGTCCAACAGCCACCTGTGTTACCGTTCTTTAAACCGGTTGATTATGTCGAAGTTTTAGCTCAAATCCATGAAGAACTCGAGTCATGTTCTTCACAGGAACAGTCAAATCTGTTTCTGTTTCAATATCAGGTTTTTAAAGGCCTTGGTGATGTTAAACTGATGCAAAGAAGCCTCCGCGAAGCATGGCGGAGAGCGAGTTCTGTTCACGAGAGGATTGTATTTGGGGCATGGTTGAAATATGAGAAGCAGGGGGAAGAACTAGTTGCTGGTTTGTTGACTGGTAAACGTCAAAACGAATATGGGCCGATAGATGTGGAGTCTCATATTCCTTCTGATGTCAAGGTAAGTTCCCAGGAGAGTGTTTTGATGAATGGGAACAACACTTCACAATATGTTGTTTTTATAATTGGCGATGAGAGGATAGTCTGTGATAGACAAAAGTTTTCTGAACTGTCAGCGCCGTTTCGTGCGATGTTAAATGGGGATTTCTGGGAATCGTCGTCTGAGGCTATAGATTTGTCTGAAAACAATATATCTCCTTCGGGTATGAGAGCGATAAGTTATTTCAGTATGACTGGTAGTTTACTCGAACAAGTCTCTCCAAAACTTCTGTTGGAGATATTAGTTTTTTCCAACAAGTATTGTTGTGATAGATTAAAAGAGGCTTGTGATAGAAGACTTGCATCCTTAGTTACTTCCAAAGAAGATGCTATCGAACTCATGGAATATGCTCTTGATGAGAACTCAGTTGTCCTTGCAGCTTCTTGTTTACAAGTCCTTTTACGTGATCTTCCTCACTGCTTGAGCGATAATCGGGTGGTGGATATATTTCTTCATGCTAATAAGCAGCAGTTGGCAGTTATGGTAGGTCAAGGTTTATTTGCGCTTTTCTGCTTCTTAAGCGAAGTTTCTATGAACCTTAACTCTAGTTCAGACACAACAGCTCATTTTCTGGAAAGGTTAGCTGATTTTGCTGAAAGCAACAAGCAGAGACTGTTGGCCTTTCATCGTTTGGGATGTGTAAGACTCTTGCGGAAAGAATACGACGAAGCTCGCTGTCTTTTTGAGAGCGCTGTAAATAATGGCCATGTTTATTCTGTTACTGGTTTAGCTCGACTTGACTCTATAAAAGGTGAGAAGGATTTATCTTATGAGAAGATCAGCTCAGTCATTTCCCCTGTCACTCGACTCGGATGGATGTACCAAGAAAGATCACTATATTGTGATGATGATTTGAGATGGAAAGACCTTGAGAAAGCAACTGAACTTGACCCCACTCTTGTATATCCCTACATGTATAGGGCTGCATCTTTAATGAGGACAGAGAATTCTCAAGGTGCACTGGCTGAAATTAATCGGATACTTGGCTTTAAACTTTCGTTAGAATGCTTGGAACTGCGGTTTTTTATATATCTGGCTCTTGAGGACTACAAAGCAGCCCTTCGTGATGTTCAAGCGATTCTTACTTTGTGTCCGCGTTATAGAATGTTTGAGGGGCGCGTAGCTGCATCTCAACTCCGCACTCTTGTGCTTGAGCATGTTGAACATTTGACGACGGCAGATTGTTGGGCACAATTATATGACTGTTGGTCTGCTGTTGATGATATTGAGTCTCTATCTGTTATTTATCAGATGCTTGAATCTGATGCGGCAAAAGGTGTTCTATACTTCAGACAGTCATTGCTTCTCCTCAGGCTAAACTGTCCTGAGGCAGCTATGCGGAGTTTACAGTTAGCTTGGCAACATGCATCAAGTGAGCATGAAAGACTTGTATATGAGGGGTGGATTTTGTATGATACTGGTCATTATGAGGAAGGGCTCCAAAAAGCTGAAGAGTCTATTTGCATTAAAAGGTCTTTTGAGGCATTTTTCCTAAAGGCCTATGCATTGGCCGACTCTGGTCTTGGTTCAATATGTTCTTCAACTGTTATTTCACTTCTCGAAGATGCCTTGAGGTGTCCTTCTGATAATCTGCGCAAAGGTCAGGCCCTGAACAATCTTGGAAGTGTTTTTGTTGATCATGGAAAACTGGACCAAGCAGCCGATTGCTATATTAAAGCCCTTAAAATCCACCATACTCGAGCCCATCAGGGTCTTGCGCGTGTTCATTTTCTAAAAAATGACAAGGCTGCTGCTTACAAGGAAATGACCAAACTTATCGAGAAGGCAAAAAACAATGCGTCGGCGTATGAGAAGAGATCCGAGTATGGGGATCGTGAACTCACAAAGGCAGATCTTGAGATGGTGACTAGACTAGATCCACTTCGTGTGTATCCTTACAGATATCGAGCAGCAGTTTTGATGGACAACCATAAGGAACTGGAAGCCATTGCTGAGCTATCTAGAGCTATTGCATTTAAAGCTGATTTGCACCTCTTACATCTACGCGCAGCGTTCCATGAACACAAGGGGGATGTCCTGAGTGCGCTAAGAGACTGTCGTGCTGCACTCTCGGTGGACCCAAACCACCAAGAAATGTTGGAACTTCATACGCGTGTTAATAGCCACGAACCATGA
Protein sequence

>Msa0028560

MRTFFNGESSKEEHLSSLNPQSWLQVERGKLPKLSSQSSSASIESLIKVQQPPVLPFFKPVDYVEVLAQIHEELESCSSQEQSNLFLFQYQVFKGLGDVKLMQRSLREAWRRASSVHERIVFGAWLKYEKQGEELVAGLLTGKRQNEYGPIDVESHIPSDVKVSSQESVLMNGNNTSQYVVFIIGDERIVCDRQKFSELSAPFRAMLNGDFWESSSEAIDLSENNISPSGMRAISYFSMTGSLLEQVSPKLLLEILVFSNKYCCDRLKEACDRRLASLVTSKEDAIELMEYALDENSVVLAASCLQVLLRDLPHCLSDNRVVDIFLHANKQQLAVMVGQGLFALFCFLSEVSMNLNSSSDTTAHFLERLADFAESNKQRLLAFHRLGCVRLLRKEYDEARCLFESAVNNGHVYSVTGLARLDSIKGEKDLSYEKISSVISPVTRLGWMYQERSLYCDDDLRWKDLEKATELDPTLVYPYMYRAASLMRTENSQGALAEINRILGFKLSLECLELRFFIYLALEDYKAALRDVQAILTLCPRYRMFEGRVAASQLRTLVLEHVEHLTTADCWAQLYDCWSAVDDIESLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLAWQHASSEHERLVYEGWILYDTGHYEEGLQKAEESICIKRSFEAFFLKAYALADSGLGSICSSTVISLLEDALRCPSDNLRKGQALNNLGSVFVDHGKLDQAADCYIKALKIHHTRAHQGLARVHFLKNDKAAAYKEMTKLIEKAKNNASAYEKRSEYGDRELTKADLEMVTRLDPLRVYPYRYRAAVLMDNHKELEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLSALRDCRAALSVDPNHQEMLELHTRVNSHEP*