AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076230 MtrunA17_Chr1g0185181 98.646 886 12 0 1 886 1 886 0.0 1805
Msa0076230 MtrunA17_Chr4g0005681 50.642 857 400 4 46 880 88 943 0.0 818
Msa0076230 MtrunA17_Chr3g0105811 47.418 852 422 6 51 881 74 920 0.0 763
Msa0076230 MtrunA17_Chr7g0243131 56.058 685 300 1 196 880 1 684 0.0 741
Msa0076230 MtrunA17_Chr7g0243111 35.345 116 64 3 29 137 62 173 8.61e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076230 AT4G02680.1 68.166 889 279 3 1 886 1 888 0.0 1204
Msa0076230 AT3G51770.2 51.059 850 399 5 51 886 109 955 0.0 830
Msa0076230 AT3G51770.1 51.059 850 399 5 51 886 101 947 0.0 830
Msa0076230 AT5G58550.1 47.128 853 425 5 51 880 60 909 0.0 740

Find 223 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATATAAATTACAAAATT+TGG 0.054987 1_2:+52189052 None:intergenic
CCGTTTCGTGCGATGTTAAA+TGG 0.150939 1_2:-52193009 Msa0076230:CDS
CGATGTTAAATGGGGATTTC+TGG 0.185566 1_2:-52192999 Msa0076230:CDS
AGAGGATTGTGGTGACAATT+TGG 0.210778 1_2:+52193616 None:intergenic
GGCCATGTTTATTCTGTTAC+TGG 0.212572 1_2:-52192385 Msa0076230:CDS
GTTCACGAGATGATTGTATT+TGG 0.228920 1_2:-52193267 Msa0076230:CDS
GGTAAACGTCAAAACGAATA+TGG 0.242747 1_2:-52193189 Msa0076230:CDS
TCCCACTATCTTTCTGTTGT+TGG 0.253404 1_2:+52194324 None:intergenic
CCAACATTTCTTGGTGGTTT+GGG 0.261388 1_2:+52189289 None:intergenic
AAGAGTCTATTTGCATTAAA+AGG 0.266900 1_2:-52190659 Msa0076230:CDS
GCTCGACTTGACTCTATAAA+AGG 0.277111 1_2:-52192358 Msa0076230:CDS
CACAATATAGTGATCTTTCT+TGG 0.280637 1_2:+52192266 None:intergenic
AGAACTTAAGTGCTCTTCTT+TGG 0.282552 1_2:+52193682 None:intergenic
TCCAACATTTCTTGGTGGTT+TGG 0.283235 1_2:+52189288 None:intergenic
TCTGTTTCTGTTTCAATATC+AGG 0.287273 1_2:-52193361 Msa0076230:CDS
TTCACGAGATGATTGTATTT+GGG 0.289372 1_2:-52193266 Msa0076230:CDS
TATGAAGTTCCAACATTTCT+TGG 0.289589 1_2:+52189280 None:intergenic
AATATCTCCAACAAAAGTTT+TGG 0.292623 1_2:+52192868 None:intergenic
TTGTATATCCCTACATGTAT+AGG 0.294097 1_2:-52192189 Msa0076230:CDS
CAATGGCTTCCAGTTCCTTA+TGG 0.297587 1_2:+52189439 None:intergenic
AAATCAAACCTTTACAAATC+AGG 0.298717 1_2:+52193789 None:intergenic
ACTGTTGGCCTTTCATCGTT+TGG 0.316810 1_2:-52192476 Msa0076230:CDS
GAATATAAATTACAAAATTT+GGG 0.324163 1_2:+52189053 None:intergenic
CGGCCAATGCATAGGCCTTT+AGG 0.325658 1_2:+52190619 None:intergenic
CTCACTGCTTGAGCGATAAT+CGG 0.328486 1_2:-52192675 Msa0076230:CDS
AATAGTGGCTGCAACTTCTA+TGG 0.330747 1_2:-52194358 Msa0076230:five_prime_UTR
GAGTTCGATAGCATCTTCTT+TGG 0.333660 1_2:+52192771 None:intergenic
CTGTTGGCCTTTCATCGTTT+GGG 0.333917 1_2:-52192475 Msa0076230:CDS
TTTATATTCTTGCTATCCTT+TGG 0.335070 1_2:-52189039 Msa0076230:three_prime_UTR
TTTGAGAGCGCTGTAAATAA+TGG 0.335421 1_2:-52192406 Msa0076230:CDS
GGGTTGTTGTTGTGGAGATC+TGG 0.339634 1_2:-52193757 Msa0076230:five_prime_UTR
CCACCATACTCGAGCCCATC+AGG 0.343844 1_2:-52189777 Msa0076230:CDS
AACATGACTCAAGTTCTTCA+TGG 0.345744 1_2:+52193403 None:intergenic
GACCCTGATGGGCTCGAGTA+TGG 0.351890 1_2:+52189774 None:intergenic
GAGGATTGTGGTGACAATTT+GGG 0.355746 1_2:+52193617 None:intergenic
AGTGAGGAAGATCACGTAAA+AGG 0.359579 1_2:+52192692 None:intergenic
AAACACTTCCAAGATTGTTC+AGG 0.361478 1_2:+52189858 None:intergenic
CGTTTCGTGCGATGTTAAAT+GGG 0.362269 1_2:-52193008 Msa0076230:CDS
TCAAATGGGTACGAAAGTTT+TGG 0.371428 1_2:+52194147 None:intergenic
TACCAGGCCCTGAACAATCT+TGG 0.373501 1_2:-52189866 Msa0076230:intron
TGAAAACAATATATCTCCTT+CGG 0.376028 1_2:-52192947 Msa0076230:CDS
TGTATATCCCTACATGTATA+GGG 0.376269 1_2:-52192188 Msa0076230:CDS
TCTATCACAACAATACTTGT+TGG 0.379743 1_2:+52192837 None:intergenic
TAAACTTTCGTTAGAATGCT+TGG 0.380126 1_2:-52192098 Msa0076230:CDS
TATGAGAAGAGATCCGAGTA+TGG 0.389290 1_2:-52189659 Msa0076230:CDS
GCATTGGCCGACTCTGGTCT+TGG 0.390640 1_2:-52190606 Msa0076230:CDS
GGTTGTTGTTGTGGAGATCT+GGG 0.406845 1_2:-52193756 Msa0076230:five_prime_UTR
TAAGCAGCAGTTGGCAGTTA+TGG 0.413136 1_2:-52192626 Msa0076230:CDS
ATCTTCTTTGGAAGTAACTA+AGG 0.415086 1_2:+52192783 None:intergenic
CCATTGAAGAAAGTCCTCAT+AGG 0.422614 1_2:+52193713 None:intergenic
TTTGAGGTTGAGGGTAATAG+TGG 0.424534 1_2:-52193851 Msa0076230:five_prime_UTR
GGATAAGCCACATATATATC+TGG 0.426164 1_2:+52189000 None:intergenic
AATAGTGGAATGTGACTAGT+AGG 0.428643 1_2:-52193836 Msa0076230:five_prime_UTR
GATGTTAAATGGGGATTTCT+GGG 0.432641 1_2:-52192998 Msa0076230:CDS
TTTGACGACGGCAGATTGTT+GGG 0.432677 1_2:-52191921 Msa0076230:CDS
GGGCATTCCTCTCTTTAGAA+AGG 0.433690 1_2:+52189073 None:intergenic
CAAGTTCAGTTGCTTTCTCA+AGG 0.436990 1_2:+52192221 None:intergenic
TCTTTCTGTTGTTGGTGTGT+TGG 0.439058 1_2:+52194332 None:intergenic
TGATAATCTGCGCAAAGGTC+AGG 0.439110 1_2:-52190526 Msa0076230:intron
TCCGCGTTATAGAATGTTTG+AGG 0.440849 1_2:-52191996 Msa0076230:CDS
TGTGTTACCGTTCTTTAAAC+CGG 0.443507 1_2:-52193454 Msa0076230:CDS
GTTCTCTTAATCCACAATCA+TGG 0.443606 1_2:-52193664 Msa0076230:CDS
GAAAACAATATATCTCCTTC+GGG 0.443685 1_2:-52192946 Msa0076230:CDS
CACCAACAACAGAAAGATAG+TGG 0.445917 1_2:-52194326 Msa0076230:five_prime_UTR
GTGCACTGGCTGAAATTAAT+CGG 0.446185 1_2:-52192132 Msa0076230:CDS
ATCCATCCGAGTCGAGTGAC+AGG 0.451951 1_2:+52192292 None:intergenic
CTAGTTGCTGGTTTGTTGAC+TGG 0.454339 1_2:-52193210 Msa0076230:CDS
GACAGTCATTGCTTCTCCTC+AGG 0.455426 1_2:-52191796 Msa0076230:intron
AAGGGCTTTAATATAGCAAT+CGG 0.456191 1_2:+52189805 None:intergenic
CATTCATCAAAACACTCTCC+TGG 0.459352 1_2:+52193118 None:intergenic
TGCGGAGTTTACAGTTAGCT+TGG 0.466730 1_2:-52190773 Msa0076230:CDS
ATTTGACGACGGCAGATTGT+TGG 0.467560 1_2:-52191922 Msa0076230:CDS
TCGCTCTCCGCCATGCTTCG+CGG 0.467797 1_2:+52193295 None:intergenic
GATGGACAACCATAAGGAAC+TGG 0.469162 1_2:-52189448 Msa0076230:CDS
GCCTATGCATTGGCCGACTC+TGG 0.469181 1_2:-52190612 Msa0076230:CDS
TTGTGTCTGAACTAGAGTTA+AGG 0.471631 1_2:+52192551 None:intergenic
TGACAAGGCTGCTGCTTACA+AGG 0.472593 1_2:-52189726 Msa0076230:CDS
CCATTTAACATCGCACGAAA+CGG 0.475186 1_2:+52193009 None:intergenic
AACACTTCCAAGATTGTTCA+GGG 0.476172 1_2:+52189859 None:intergenic
TAGAAAGGAAAATGATATCA+TGG 0.482871 1_2:+52189088 None:intergenic
GTATGATACTGGTCATTATG+AGG 0.485156 1_2:-52190700 Msa0076230:CDS
AGAAGATGCTATCGAACTCA+TGG 0.485643 1_2:-52192767 Msa0076230:CDS
TAATATAGCAATCGGCTGCT+TGG 0.486527 1_2:+52189813 None:intergenic
TTGTTGTGATAGATTAAAAG+AGG 0.488749 1_2:-52192827 Msa0076230:CDS
TCTTTGACCCTGATTTGTAA+AGG 0.491027 1_2:-52193797 Msa0076230:five_prime_UTR
CCGCGTTATAGAATGTTTGA+GGG 0.494477 1_2:-52191995 Msa0076230:CDS
TCACTGCTTGAGCGATAATC+GGG 0.495907 1_2:-52192674 Msa0076230:CDS
ATGGTTGAAATATGAGAAGC+AGG 0.502476 1_2:-52193241 Msa0076230:CDS
CTTGAATCTGATGCGGCAAA+AGG 0.502861 1_2:-52191833 Msa0076230:CDS
CCCAAACCACCAAGAAATGT+TGG 0.503161 1_2:-52189289 Msa0076230:CDS
AAAACTTCGACATAATCAAC+CGG 0.504243 1_2:+52193435 None:intergenic
ATATGCAGGAAAGGGTCAAA+TGG 0.505300 1_2:+52194132 None:intergenic
ATAAGTTATTTCAGTATGAC+TGG 0.510443 1_2:-52192913 Msa0076230:CDS
GAGAAGGGTTTGAAGATGAA+AGG 0.513472 1_2:+52194221 None:intergenic
AATCAAACCTTTACAAATCA+GGG 0.513574 1_2:+52193790 None:intergenic
GGTCCACATTCAACAAATAG+TGG 0.515032 1_2:-52194373 None:intergenic
GCGGTAATAAAATACATGTA+TGG 0.515136 1_2:+52188970 None:intergenic
GCTGAAATTAATCGGATACT+TGG 0.515937 1_2:-52192124 Msa0076230:CDS
AGACTGTCGTGCTGCACTCT+CGG 0.518787 1_2:-52189316 Msa0076230:CDS
AGAGAATTCTCAAGGTGCAC+TGG 0.519053 1_2:-52192146 Msa0076230:CDS
ATCTTACATTGATGCAGAAG+AGG 0.519598 1_2:+52193598 None:intergenic
GTAAACGTCAAAACGAATAT+GGG 0.522451 1_2:-52193188 Msa0076230:CDS
CCTGCTGCTCGATATCTGTA+AGG 0.523465 1_2:+52189572 None:intergenic
CCTATGAGGACTTTCTTCAA+TGG 0.524229 1_2:-52193713 Msa0076230:CDS
TTTCCTAAAGGCCTATGCAT+TGG 0.524357 1_2:-52190622 Msa0076230:CDS
AAATACATGTATGGTTGTTG+AGG 0.526165 1_2:+52188979 None:intergenic
ATTTCCCCTGTCACTCGACT+CGG 0.526456 1_2:-52192298 Msa0076230:CDS
AATAAGGAATATGCAGGAAA+GGG 0.526953 1_2:+52194124 None:intergenic
ATGAGAAGAGATCCGAGTAT+GGG 0.528955 1_2:-52189658 Msa0076230:CDS
CCTTACAGATATCGAGCAGC+AGG 0.529501 1_2:-52189572 Msa0076230:intron
GCAGAAAGAAAGAAATGAGA+AGG 0.531163 1_2:+52194205 None:intergenic
TCACGAGATGATTGTATTTG+GGG 0.532250 1_2:-52193265 Msa0076230:CDS
AGATGCAGCCCTATACATGT+AGG 0.534074 1_2:+52192180 None:intergenic
GAAGTTCCAACATTTCTTGG+TGG 0.535323 1_2:+52189283 None:intergenic
GAATAATAGGGTTGTTGTTG+TGG 0.535996 1_2:-52193765 Msa0076230:five_prime_UTR
AAATAAGGAATATGCAGGAA+AGG 0.537352 1_2:+52194123 None:intergenic
TTCGTGTATTATGCCCTATG+AGG 0.539626 1_2:-52193727 Msa0076230:exon
TATGCAGGAAAGGGTCAAAT+GGG 0.540408 1_2:+52194133 None:intergenic
GCATGAAAGACTTGTATATG+AGG 0.540587 1_2:-52190733 Msa0076230:CDS
GATACTGGTCATTATGAGGA+AGG 0.545226 1_2:-52190696 Msa0076230:CDS
ACTTGAGTCATGTTCTTCAC+AGG 0.545464 1_2:-52193394 Msa0076230:CDS
TCATGGCTTCAAGTTGAAAG+AGG 0.546316 1_2:-52193647 Msa0076230:CDS
CGCAGCGTTCCATGAACACA+AGG 0.546764 1_2:-52189361 Msa0076230:CDS
AAACTCCGCATAGCTGCCTC+AGG 0.547345 1_2:+52190786 None:intergenic
TGACTCTATAAAAGGTGAGA+AGG 0.549853 1_2:-52192350 Msa0076230:CDS
AAAGAAGCCTCCGCGAAGCA+TGG 0.550163 1_2:-52193305 Msa0076230:CDS
TTATAGTGAATCTCTAATCA+AGG 0.550486 1_2:-52193490 Msa0076230:intron
GCATCAAATAAGGAATATGC+AGG 0.550988 1_2:+52194118 None:intergenic
ACGGTAACACAGGTGGCTGT+TGG 0.551175 1_2:+52193466 None:intergenic
GCTGATGATTGTACAAATGC+TGG 0.551964 1_2:+52189199 None:intergenic
CGTTAGAATGCTTGGAACTG+CGG 0.552505 1_2:-52192090 Msa0076230:CDS
AACACGCGCAAGACCCTGAT+GGG 0.553316 1_2:+52189763 None:intergenic
ATGTAGGGATATACAAGAGT+GGG 0.553780 1_2:+52192196 None:intergenic
TTGGCAGTTATGGTAGGTCA+AGG 0.553971 1_2:-52192616 Msa0076230:CDS
TGTCTTATCTTGAAAAGAAG+AGG 0.556146 1_2:+52188926 None:intergenic
TCATGCTAATAAGCAGCAGT+TGG 0.558599 1_2:-52192635 Msa0076230:CDS
TCAACTTGAAGCCATGATTG+TGG 0.559627 1_2:+52193653 None:intergenic
CAAACTTGACTCATGGTTCG+TGG 0.559712 1_2:+52189244 None:intergenic
ATATGAGACTCCACATCTAT+CGG 0.562574 1_2:+52193165 None:intergenic
TACACATCCCAAACGATGAA+AGG 0.563344 1_2:+52192468 None:intergenic
CACTTCTCGAAGATGCCTTG+AGG 0.563644 1_2:-52190557 Msa0076230:CDS
CATTGAAGAAAGTCCTCATA+GGG 0.564706 1_2:+52193714 None:intergenic
AGATGATTGTATTTGGGGCA+TGG 0.568294 1_2:-52193260 Msa0076230:CDS
AGTCAAGTTTGCGAGCTATG+AGG 0.569226 1_2:-52189232 Msa0076230:three_prime_UTR
TGATGTCAAGGTAAGTTCCC+AGG 0.569517 1_2:-52193136 Msa0076230:CDS
ATTCATCAAAACACTCTCCT+GGG 0.571948 1_2:+52193119 None:intergenic
GACAGTCTCTTAGCGCACTC+AGG 0.573098 1_2:+52189331 None:intergenic
TCATATTCCTTCTGATGTCA+AGG 0.575470 1_2:-52193148 Msa0076230:CDS
GAACTTACCTTGACATCAGA+AGG 0.576119 1_2:+52193141 None:intergenic
AAGGGTTTGAAGATGAAAGG+AGG 0.579016 1_2:+52194224 None:intergenic
ACGCTGCGCGTAGATGTAAG+AGG 0.579089 1_2:+52189376 None:intergenic
GAGTTCACGATCCCCATACT+CGG 0.579548 1_2:+52189646 None:intergenic
CTTGAGCGATAATCGGGTGG+TGG 0.580545 1_2:-52192668 Msa0076230:CDS
CGAATATGGGCCGATAGATG+TGG 0.582159 1_2:-52193175 Msa0076230:CDS
CTGTAAGGATACACACGAAG+TGG 0.582972 1_2:+52189587 None:intergenic
ATACTGGTCATTATGAGGAA+GGG 0.584670 1_2:-52190695 Msa0076230:CDS
ATTGTGATGATGATTTGAGA+TGG 0.585528 1_2:-52192249 Msa0076230:CDS
CATGGCTTCAAGTTGAAAGA+GGG 0.586439 1_2:-52193646 Msa0076230:CDS
ACCAGAGTCGGCCAATGCAT+AGG 0.589399 1_2:+52190611 None:intergenic
ATTACAACAGAGTATACAGA+TGG 0.590218 1_2:+52189120 None:intergenic
CAGCAGTTGGCAGTTATGGT+AGG 0.590509 1_2:-52192622 Msa0076230:CDS
CCCCTGTCACTCGACTCGGA+TGG 0.590694 1_2:-52192294 Msa0076230:CDS
GATGCAGCCCTATACATGTA+GGG 0.591178 1_2:+52192181 None:intergenic
TGGTTGAAATATGAGAAGCA+GGG 0.596245 1_2:-52193240 Msa0076230:CDS
CCTGATGGGCTCGAGTATGG+TGG 0.596465 1_2:+52189777 None:intergenic
CGCGTTATAGAATGTTTGAG+GGG 0.597250 1_2:-52191994 Msa0076230:CDS
AAGCAACAAGCAGAGACTGT+TGG 0.598461 1_2:-52192491 Msa0076230:CDS
ATTATCAGAAGGACACCTCA+AGG 0.599241 1_2:+52190542 None:intergenic
ATGAGGACAGAGAATTCTCA+AGG 0.601625 1_2:-52192154 Msa0076230:CDS
TGGGATGTGTAAGACTCTTG+CGG 0.602911 1_2:-52192456 Msa0076230:CDS
TAGCTCGCAAACTTGACTCA+TGG 0.603131 1_2:+52189237 None:intergenic
AGCTCTAGATAGCTCAGCAA+TGG 0.603255 1_2:+52189422 None:intergenic
AAGAATACCAGATATATATG+TGG 0.606691 1_2:-52189007 Msa0076230:three_prime_UTR
GTTTCGTGCGATGTTAAATG+GGG 0.610029 1_2:-52193007 Msa0076230:CDS
ATAGGGCTGCATCTTTAATG+AGG 0.610370 1_2:-52192171 Msa0076230:CDS
AAAGACTTGTATATGAGGGG+TGG 0.612054 1_2:-52190728 Msa0076230:CDS
TCCATCCGAGTCGAGTGACA+GGG 0.612152 1_2:+52192293 None:intergenic
GAACACGCGCAAGACCCTGA+TGG 0.612717 1_2:+52189762 None:intergenic
TAATCAACCGGTTTAAAGAA+CGG 0.616970 1_2:+52193447 None:intergenic
GGGCACAATTATATGACTGT+TGG 0.617088 1_2:-52191901 Msa0076230:CDS
TATTGAACCAAGACCAGAGT+CGG 0.619309 1_2:+52190599 None:intergenic
CTCTCCGCCATGCTTCGCGG+AGG 0.620798 1_2:+52193298 None:intergenic
TGAGAAGAGATCCGAGTATG+GGG 0.621478 1_2:-52189657 Msa0076230:CDS
CACCATACTCGAGCCCATCA+GGG 0.625478 1_2:-52189776 Msa0076230:CDS
CTTGTAAACAAGAAGCTGCA+AGG 0.625964 1_2:+52192716 None:intergenic
CATGTAGGGATATACAAGAG+TGG 0.626406 1_2:+52192195 None:intergenic
TTTCTGGGAATCGTCGTCTG+AGG 0.626743 1_2:-52192983 Msa0076230:CDS
TACACAAATATGTTTAGATG+CGG 0.628601 1_2:+52188951 None:intergenic
CAGCGTTCCATGAACACAAG+GGG 0.629074 1_2:-52189359 Msa0076230:CDS
CAGAAAGAAAGAAATGAGAA+GGG 0.629586 1_2:+52194206 None:intergenic
TATTCTTAACACATCTCCAA+AGG 0.630781 1_2:+52189023 None:intergenic
CACAAAGGCAGATCTTGAGA+TGG 0.631605 1_2:-52189624 Msa0076230:CDS
CATGAAAGACTTGTATATGA+GGG 0.634711 1_2:-52190732 Msa0076230:CDS
AATGACCAAACTTATCGAGA+AGG 0.635600 1_2:-52189702 Msa0076230:CDS
TCAGATGCTTGAATCTGATG+CGG 0.636780 1_2:-52191840 Msa0076230:CDS
GGTTGAAATATGAGAAGCAG+GGG 0.637522 1_2:-52193239 Msa0076230:CDS
CTGCTTGAGCGATAATCGGG+TGG 0.640329 1_2:-52192671 Msa0076230:CDS
CCCTCAAACATTCTATAACG+CGG 0.643662 1_2:+52191995 None:intergenic
GGTTTAAAGAACGGTAACAC+AGG 0.645027 1_2:+52193456 None:intergenic
CCTTTGCGCAGATTATCAGA+AGG 0.649315 1_2:+52190531 None:intergenic
CTTATCGCTCTTATACCCGA+AGG 0.652004 1_2:+52192931 None:intergenic
ATTTAGGCTAAACTGTCCTG+AGG 0.653337 1_2:-52190802 Msa0076230:intron
ACCAACAACAGAAAGATAGT+GGG 0.654790 1_2:-52194325 Msa0076230:five_prime_UTR
CCTTCTGATAATCTGCGCAA+AGG 0.655235 1_2:-52190531 Msa0076230:CDS
AACCAGTAACAGAATAAACA+TGG 0.659934 1_2:+52192383 None:intergenic
ATTGATGCAGAAGAGGATTG+TGG 0.661016 1_2:+52193605 None:intergenic
AATCGCTTGAACATCACGAA+GGG 0.661375 1_2:+52192030 None:intergenic
CTGTCGTGCTGCACTCTCGG+TGG 0.669685 1_2:-52189313 Msa0076230:CDS
GAAGCCTCCGCGAAGCATGG+CGG 0.670703 1_2:-52193302 Msa0076230:CDS
ATGAAAGACTTGTATATGAG+GGG 0.671236 1_2:-52190731 Msa0076230:CDS
CATGCTCAAGCACAAGAGTG+CGG 0.678233 1_2:+52191951 None:intergenic
TGGGGATCGTGAACTCACAA+AGG 0.679605 1_2:-52189639 Msa0076230:CDS
GCAGCGTTCCATGAACACAA+GGG 0.680635 1_2:-52189360 Msa0076230:CDS
CCATCCGAGTCGAGTGACAG+GGG 0.681722 1_2:+52192294 None:intergenic
GCATCAGTTTAACATCACCA+AGG 0.683805 1_2:+52193328 None:intergenic
TTAAAGAACGGTAACACAGG+TGG 0.686583 1_2:+52193459 None:intergenic
CGATTATCGCTCAAGCAGTG+AGG 0.692445 1_2:+52192676 None:intergenic
GAATCGCTTGAACATCACGA+AGG 0.693374 1_2:+52192029 None:intergenic
GCATGTTGAACATTTGACGA+CGG 0.694893 1_2:-52191933 Msa0076230:CDS
TGTAGGGATATACAAGAGTG+GGG 0.708232 1_2:+52192197 None:intergenic
AGCGTTCCATGAACACAAGG+GGG 0.730043 1_2:-52189358 Msa0076230:CDS
ACTGTCCTGAGGCAGCTATG+CGG 0.731322 1_2:-52190791 Msa0076230:CDS
GTTGAAATATGAGAAGCAGG+GGG 0.744146 1_2:-52193238 Msa0076230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATATAAATTACAAAATTT+GGG + chr1_2:52194224-52194243 None:intergenic 10.0%
!! AGAATATAAATTACAAAATT+TGG + chr1_2:52194225-52194244 None:intergenic 10.0%
!!! TTTTTATTTTTTTACTTCTG+TGG - chr1_2:52189273-52189292 Msa0076230:CDS 15.0%
!!! AACAAAACTTTTTATCATTT+TGG + chr1_2:52189373-52189392 None:intergenic 15.0%
!!! TTAGATTATTTTTAAGTTTG+AGG - chr1_2:52189407-52189426 Msa0076230:CDS 15.0%
!!! CAATATGTTGTTTTTATAAT+TGG - chr1_2:52190193-52190212 Msa0076230:intron 15.0%
!!! ACTTTAATTTAGGAAAAATA+GGG + chr1_2:52191707-52191726 None:intergenic 15.0%
!!! AACTTTAATTTAGGAAAAAT+AGG + chr1_2:52191708-52191727 None:intergenic 15.0%
!!! GGAAAAAAAAAACTATTTTT+AGG + chr1_2:52192065-52192084 None:intergenic 15.0%
!!! TGTAAAAAGAAATGATTTTA+CGG - chr1_2:52192859-52192878 Msa0076230:CDS 15.0%
!!! ATTGTTTTTGTTTTCTCATA+GGG - chr1_2:52189333-52189352 Msa0076230:CDS 20.0%
!!! AAAGTTTTGTTTTTTCTTTC+TGG - chr1_2:52189382-52189401 Msa0076230:CDS 20.0%
!!! AAGTTTTGTTTTTTCTTTCT+GGG - chr1_2:52189383-52189402 Msa0076230:CDS 20.0%
!!! AAGGTTTGATTTTGAATAAT+AGG - chr1_2:52189496-52189515 Msa0076230:intron 20.0%
!!! AGGTTTGATTTTGAATAATA+GGG - chr1_2:52189497-52189516 Msa0076230:intron 20.0%
!!! TTTCAATATCAGGTTTTTAA+AGG - chr1_2:52189923-52189942 Msa0076230:intron 20.0%
!! CCTACTATATGATTAAATAT+AGG + chr1_2:52191620-52191639 None:intergenic 20.0%
!! CCTATATTTAATCATATAGT+AGG - chr1_2:52191617-52191636 Msa0076230:intron 20.0%
!! AAGGCTGATAAATAAAAATA+AGG - chr1_2:52191661-52191680 Msa0076230:intron 20.0%
!!! TTTAATTTAGGAAAAATAGG+GGG + chr1_2:52191705-52191724 None:intergenic 20.0%
!!! CTTTAATTTAGGAAAAATAG+GGG + chr1_2:52191706-52191725 None:intergenic 20.0%
!!! AAACTCAATTTTAAAATGGA+GGG + chr1_2:52191736-52191755 None:intergenic 20.0%
!!! AAAACTCAATTTTAAAATGG+AGG + chr1_2:52191737-52191756 None:intergenic 20.0%
!!! TCCATTTTAAAATTGAGTTT+TGG - chr1_2:52191736-52191755 Msa0076230:intron 20.0%
!!! CCATTTTAAAATTGAGTTTT+GGG - chr1_2:52191737-52191756 Msa0076230:intron 20.0%
!! AGCAAAAATGACTAAAAATT+TGG - chr1_2:52191924-52191943 Msa0076230:CDS 20.0%
!! AAAAATGACTAAAAATTTGG+CGG - chr1_2:52191927-52191946 Msa0076230:CDS 20.0%
!!! ACTTTAATTTAAGCCAAATA+TGG - chr1_2:52192019-52192038 Msa0076230:CDS 20.0%
!!! CTTTAATTTAAGCCAAATAT+GGG - chr1_2:52192020-52192039 Msa0076230:CDS 20.0%
!!! TTTAATTTAAGCCAAATATG+GGG - chr1_2:52192021-52192040 Msa0076230:CDS 20.0%
!! ATCTGACATTTATATGATTT+AGG - chr1_2:52192456-52192475 Msa0076230:CDS 20.0%
!!! AGAACTATTTTCATTAGTTT+TGG + chr1_2:52193105-52193124 None:intergenic 20.0%
!! AAATATAACCAACTATACAA+AGG + chr1_2:52193298-52193317 None:intergenic 20.0%
!! GTTAATACTTATTGTATCAA+AGG + chr1_2:52193353-52193372 None:intergenic 20.0%
!!! AAGTATTAACTTAAGAGTTT+TGG - chr1_2:52193363-52193382 Msa0076230:CDS 20.0%
!!! TCATTTTCTAAAAAATGACA+AGG - chr1_2:52193533-52193552 Msa0076230:intron 20.0%
!! TACTTGACAATATGTATATA+TGG - chr1_2:52193784-52193803 Msa0076230:five_prime_UTR 20.0%
!!! TTGAACTTTGTTTTTCTGTT+TGG + chr1_2:52189015-52189034 None:intergenic 25.0%
!!! GTTTTGTTTAGCATCAAATA+AGG + chr1_2:52189169-52189188 None:intergenic 25.0%
!!! GATTGTTTTTGTTTTCTCAT+AGG - chr1_2:52189332-52189351 Msa0076230:CDS 25.0%
!!! TATTTTTAAGTTTGAGGTTG+AGG - chr1_2:52189413-52189432 Msa0076230:CDS 25.0%
!!! ATTTTTAAGTTTGAGGTTGA+GGG - chr1_2:52189414-52189433 Msa0076230:CDS 25.0%
! AATCAAACCTTTACAAATCA+GGG + chr1_2:52189487-52189506 None:intergenic 25.0%
! AAATCAAACCTTTACAAATC+AGG + chr1_2:52189488-52189507 None:intergenic 25.0%
! TTATAGTGAATCTCTAATCA+AGG - chr1_2:52189784-52189803 Msa0076230:CDS 25.0%
! TGAAAACAATATATCTCCTT+CGG - chr1_2:52190327-52190346 Msa0076230:intron 25.0%
!! ATAAGTTATTTCAGTATGAC+TGG - chr1_2:52190361-52190380 Msa0076230:intron 25.0%
!! AATATCTCCAACAAAAGTTT+TGG + chr1_2:52190409-52190428 None:intergenic 25.0%
! TTGTTGTGATAGATTAAAAG+AGG - chr1_2:52190447-52190466 Msa0076230:intron 25.0%
!! AGGGACTAAAACTTTAATTT+AGG + chr1_2:52191717-52191736 None:intergenic 25.0%
!!! CCCAAAACTCAATTTTAAAA+TGG + chr1_2:52191740-52191759 None:intergenic 25.0%
!! CAAAGGAAAATTTTATGATG+TGG + chr1_2:52192321-52192340 None:intergenic 25.0%
! AAGAGTCTATTTGCATTAAA+AGG - chr1_2:52192615-52192634 Msa0076230:CDS 25.0%
! ATTAGAGAAATATTTCCAGA+AGG + chr1_2:52192796-52192815 None:intergenic 25.0%
! GGAAATTTATTAGCAGTTAT+TGG - chr1_2:52192880-52192899 Msa0076230:CDS 25.0%
! ATGTTATCTTACCACAAAAT+TGG + chr1_2:52192946-52192965 None:intergenic 25.0%
!!! TTAACTTGCTAATAAGAAGA+TGG - chr1_2:52193015-52193034 Msa0076230:CDS 25.0%
!!! TAACTTGCTAATAAGAAGAT+GGG - chr1_2:52193016-52193035 Msa0076230:CDS 25.0%
! ACAAAGGCTAACAAATTTAT+TGG + chr1_2:52193282-52193301 None:intergenic 25.0%
!! TTTGTTCCATTTAATTTACC+AGG - chr1_2:52193392-52193411 Msa0076230:CDS 25.0%
! TAGAAAGGAAAATGATATCA+TGG + chr1_2:52194189-52194208 None:intergenic 25.0%
!! TTTATATTCTTGCTATCCTT+TGG - chr1_2:52194235-52194254 Msa0076230:five_prime_UTR 25.0%
! AAGAATACCAGATATATATG+TGG - chr1_2:52194267-52194286 Msa0076230:five_prime_UTR 25.0%
! TACACAAATATGTTTAGATG+CGG + chr1_2:52194326-52194345 None:intergenic 25.0%
!! TGTTTTTCTGTTTGGTGAAA+GGG + chr1_2:52189007-52189026 None:intergenic 30.0%
!! TTGTTTTTCTGTTTGGTGAA+AGG + chr1_2:52189008-52189027 None:intergenic 30.0%
CAGAAAGAAAGAAATGAGAA+GGG + chr1_2:52189071-52189090 None:intergenic 30.0%
AATAAGGAATATGCAGGAAA+GGG + chr1_2:52189153-52189172 None:intergenic 30.0%
AAATAAGGAATATGCAGGAA+AGG + chr1_2:52189154-52189173 None:intergenic 30.0%
!!! TTTTTGTTTTCTCATAGGGT+AGG - chr1_2:52189337-52189356 Msa0076230:CDS 30.0%
! TAATCAACCGGTTTAAAGAA+CGG + chr1_2:52189830-52189849 None:intergenic 30.0%
AAAACTTCGACATAATCAAC+CGG + chr1_2:52189842-52189861 None:intergenic 30.0%
!! TCTGTTTCTGTTTCAATATC+AGG - chr1_2:52189913-52189932 Msa0076230:intron 30.0%
TTCACGAGATGATTGTATTT+GGG - chr1_2:52190008-52190027 Msa0076230:intron 30.0%
GTAAACGTCAAAACGAATAT+GGG - chr1_2:52190086-52190105 Msa0076230:intron 30.0%
! TTTTTATAATTGGCGATGAG+AGG - chr1_2:52190203-52190222 Msa0076230:intron 30.0%
GAAAACAATATATCTCCTTC+GGG - chr1_2:52190328-52190347 Msa0076230:intron 30.0%
TCTATCACAACAATACTTGT+TGG + chr1_2:52190440-52190459 None:intergenic 30.0%
! ATCTTCTTTGGAAGTAACTA+AGG + chr1_2:52190494-52190513 None:intergenic 30.0%
AACCAGTAACAGAATAAACA+TGG + chr1_2:52190894-52190913 None:intergenic 30.0%
CACAATATAGTGATCTTTCT+TGG + chr1_2:52191011-52191030 None:intergenic 30.0%
! ATTGTGATGATGATTTGAGA+TGG - chr1_2:52191025-52191044 Msa0076230:intron 30.0%
TTGTATATCCCTACATGTAT+AGG - chr1_2:52191085-52191104 Msa0076230:intron 30.0%
TGTATATCCCTACATGTATA+GGG - chr1_2:52191086-52191105 Msa0076230:intron 30.0%
TAAACTTTCGTTAGAATGCT+TGG - chr1_2:52191176-52191195 Msa0076230:intron 30.0%
!!! ACTGCGGTTTTTTATATATC+TGG - chr1_2:52191200-52191219 Msa0076230:intron 30.0%
!!! TTTTATATATCTGGCTCTTG+AGG - chr1_2:52191209-52191228 Msa0076230:intron 30.0%
! TCACTCTGTTTCACAATTTT+CGG + chr1_2:52191965-52191984 None:intergenic 30.0%
!!! TATTTCTAAAACCGGGTTTT+TGG + chr1_2:52191988-52192007 None:intergenic 30.0%
!!! AAAAACCCGGTTTTAGAAAT+AGG - chr1_2:52191987-52192006 Msa0076230:CDS 30.0%
!!! AAAACCCGGTTTTAGAAATA+GGG - chr1_2:52191988-52192007 Msa0076230:CDS 30.0%
! ATTGAAACTTTTGTATGCCA+TGG - chr1_2:52192424-52192443 Msa0076230:CDS 30.0%
CATGAAAGACTTGTATATGA+GGG - chr1_2:52192542-52192561 Msa0076230:CDS 30.0%
ATGAAAGACTTGTATATGAG+GGG - chr1_2:52192543-52192562 Msa0076230:CDS 30.0%
! AAATAGACTCTTCAGCTTTT+TGG + chr1_2:52192607-52192626 None:intergenic 30.0%
! TTGCATTAAAAGGTCTTTTG+AGG - chr1_2:52192625-52192644 Msa0076230:CDS 30.0%
!!! TTTTGAGGCATTTTTCCTAA+AGG - chr1_2:52192640-52192659 Msa0076230:CDS 30.0%
! CTCGACATTTTCATTGTTTT+CGG - chr1_2:52193123-52193142 Msa0076230:CDS 30.0%
!!! GCTAGTTTTACTTGTTAACA+AGG + chr1_2:52193188-52193207 None:intergenic 30.0%
!! TTTGTTAGCCTTTGTATAGT+TGG - chr1_2:52193287-52193306 Msa0076230:CDS 30.0%
! TTTTGTTGATCATGGAAAAC+TGG - chr1_2:52193437-52193456 Msa0076230:CDS 30.0%
! AAGGGCTTTAATATAGCAAT+CGG + chr1_2:52193472-52193491 None:intergenic 30.0%
TATGAAGTTCCAACATTTCT+TGG + chr1_2:52193997-52194016 None:intergenic 30.0%
ATTACAACAGAGTATACAGA+TGG + chr1_2:52194157-52194176 None:intergenic 30.0%
!! TCATTTTCCTTTCTAAAGAG+AGG - chr1_2:52194194-52194213 Msa0076230:five_prime_UTR 30.0%
TATTCTTAACACATCTCCAA+AGG + chr1_2:52194254-52194273 None:intergenic 30.0%
AAATACATGTATGGTTGTTG+AGG + chr1_2:52194298-52194317 None:intergenic 30.0%
GCGGTAATAAAATACATGTA+TGG + chr1_2:52194307-52194326 None:intergenic 30.0%
TGTCTTATCTTGAAAAGAAG+AGG + chr1_2:52194351-52194370 None:intergenic 30.0%
ACCAACAACAGAAAGATAGT+GGG - chr1_2:52188949-52188968 Msa0076230:three_prime_UTR 35.0%
GCAGAAAGAAAGAAATGAGA+AGG + chr1_2:52189072-52189091 None:intergenic 35.0%
! TCAAATGGGTACGAAAGTTT+TGG + chr1_2:52189130-52189149 None:intergenic 35.0%
GCATCAAATAAGGAATATGC+AGG + chr1_2:52189159-52189178 None:intergenic 35.0%
! AATAGTGGAATGTGACTAGT+AGG - chr1_2:52189438-52189457 Msa0076230:CDS 35.0%
! TCTTTGACCCTGATTTGTAA+AGG - chr1_2:52189477-52189496 Msa0076230:intron 35.0%
! GAATAATAGGGTTGTTGTTG+TGG - chr1_2:52189509-52189528 Msa0076230:intron 35.0%
CATTGAAGAAAGTCCTCATA+GGG + chr1_2:52189563-52189582 None:intergenic 35.0%
AGAACTTAAGTGCTCTTCTT+TGG + chr1_2:52189595-52189614 None:intergenic 35.0%
GTTCTCTTAATCCACAATCA+TGG - chr1_2:52189610-52189629 Msa0076230:CDS 35.0%
ATCTTACATTGATGCAGAAG+AGG + chr1_2:52189679-52189698 None:intergenic 35.0%
TGTGTTACCGTTCTTTAAAC+CGG - chr1_2:52189820-52189839 Msa0076230:CDS 35.0%
AACATGACTCAAGTTCTTCA+TGG + chr1_2:52189874-52189893 None:intergenic 35.0%
!! TATCAGGTTTTTAAAGGCCT+TGG - chr1_2:52189929-52189948 Msa0076230:intron 35.0%
GTTCACGAGATGATTGTATT+TGG - chr1_2:52190007-52190026 Msa0076230:intron 35.0%
TCACGAGATGATTGTATTTG+GGG - chr1_2:52190009-52190028 Msa0076230:intron 35.0%
ATGGTTGAAATATGAGAAGC+AGG - chr1_2:52190033-52190052 Msa0076230:intron 35.0%
TGGTTGAAATATGAGAAGCA+GGG - chr1_2:52190034-52190053 Msa0076230:intron 35.0%
GGTAAACGTCAAAACGAATA+TGG - chr1_2:52190085-52190104 Msa0076230:intron 35.0%
ATATGAGACTCCACATCTAT+CGG + chr1_2:52190112-52190131 None:intergenic 35.0%
TCATATTCCTTCTGATGTCA+AGG - chr1_2:52190126-52190145 Msa0076230:intron 35.0%
ATTCATCAAAACACTCTCCT+GGG + chr1_2:52190158-52190177 None:intergenic 35.0%
!!! AGGAGAGTGTTTTGATGAAT+GGG - chr1_2:52190158-52190177 Msa0076230:intron 35.0%
GATGTTAAATGGGGATTTCT+GGG - chr1_2:52190276-52190295 Msa0076230:intron 35.0%
! AGTCTCTCCAAAACTTTTGT+TGG - chr1_2:52190399-52190418 Msa0076230:intron 35.0%
TTGTGTCTGAACTAGAGTTA+AGG + chr1_2:52190726-52190745 None:intergenic 35.0%
!! TTTGAGAGCGCTGTAAATAA+TGG - chr1_2:52190868-52190887 Msa0076230:intron 35.0%
TGACTCTATAAAAGGTGAGA+AGG - chr1_2:52190924-52190943 Msa0076230:intron 35.0%
ATGTAGGGATATACAAGAGT+GGG + chr1_2:52191081-52191100 None:intergenic 35.0%
GCTGAAATTAATCGGATACT+TGG - chr1_2:52191150-52191169 Msa0076230:intron 35.0%
ATAAGGCTTAGATGCATTTC+TGG - chr1_2:52191678-52191697 Msa0076230:intron 35.0%
ATCCTGAAAGTTGTGAAACA+GGG + chr1_2:52191766-52191785 None:intergenic 35.0%
AATCCTGAAAGTTGTGAAAC+AGG + chr1_2:52191767-52191786 None:intergenic 35.0%
ATTGCCACATCAAAATAGAC+GGG + chr1_2:52191863-52191882 None:intergenic 35.0%
CATTGCCACATCAAAATAGA+CGG + chr1_2:52191864-52191883 None:intergenic 35.0%
AATGACTAAAAATTTGGCGG+TGG - chr1_2:52191930-52191949 Msa0076230:CDS 35.0%
! CACTCTGTTTCACAATTTTC+GGG + chr1_2:52191964-52191983 None:intergenic 35.0%
!!! AAACCCGGTTTTAGAAATAG+GGG - chr1_2:52191989-52192008 Msa0076230:CDS 35.0%
GAATTCTACACGTACATAAC+AGG + chr1_2:52192092-52192111 None:intergenic 35.0%
CACTCTTCAAACTTAAGTGT+CGG + chr1_2:52192142-52192161 None:intergenic 35.0%
TTGAATGTAGCCACATGTAT+TGG + chr1_2:52192183-52192202 None:intergenic 35.0%
TACTTACACAGACACAAACA+CGG + chr1_2:52192257-52192276 None:intergenic 35.0%
TCTCTATCAAAACAACCACA+AGG - chr1_2:52192286-52192305 Msa0076230:CDS 35.0%
! ATGTGGATTTTTACTCCTTG+TGG + chr1_2:52192304-52192323 None:intergenic 35.0%
TGTCAGATTCATTTACTCCA+TGG + chr1_2:52192444-52192463 None:intergenic 35.0%
GCATGAAAGACTTGTATATG+AGG - chr1_2:52192541-52192560 Msa0076230:CDS 35.0%
GTATGATACTGGTCATTATG+AGG - chr1_2:52192574-52192593 Msa0076230:CDS 35.0%
ATACTGGTCATTATGAGGAA+GGG - chr1_2:52192579-52192598 Msa0076230:CDS 35.0%
! TTTTCTATTGTACCACCTTC+TGG - chr1_2:52192778-52192797 Msa0076230:CDS 35.0%
AGAGAAATATTTCCAGAAGG+TGG + chr1_2:52192793-52192812 None:intergenic 35.0%
! TTGTAGAAGTTCTGATGTGT+AGG - chr1_2:52192908-52192927 Msa0076230:CDS 35.0%
! TCTAGGTAACACCAATTTTG+TGG - chr1_2:52192932-52192951 Msa0076230:CDS 35.0%
TTTGTGGTAAGATAACATGC+AGG - chr1_2:52192948-52192967 Msa0076230:CDS 35.0%
TTGTGGTAAGATAACATGCA+GGG - chr1_2:52192949-52192968 Msa0076230:CDS 35.0%
! ATGTTTTCACAAAGCAAACG+AGG - chr1_2:52193235-52193254 Msa0076230:CDS 35.0%
GGTATTAATACATTCTGCCA+AGG + chr1_2:52193261-52193280 None:intergenic 35.0%
TGTAGCATCACATCATTTCT+AGG - chr1_2:52193317-52193336 Msa0076230:CDS 35.0%
AACACTTCCAAGATTGTTCA+GGG + chr1_2:52193418-52193437 None:intergenic 35.0%
AAACACTTCCAAGATTGTTC+AGG + chr1_2:52193419-52193438 None:intergenic 35.0%
!!! GGAAGTGTTTTTGTTGATCA+TGG - chr1_2:52193429-52193448 Msa0076230:CDS 35.0%
!!! TCGAGTATGGTGGATTTTAA+GGG + chr1_2:52193490-52193509 None:intergenic 35.0%
AATGACCAAACTTATCGAGA+AGG - chr1_2:52193572-52193591 Msa0076230:intron 35.0%
! TTTTGCCTTCTCGATAAGTT+TGG + chr1_2:52193580-52193599 None:intergenic 35.0%
!!! CAGCAGGTTGATATTTTTAC+TGG - chr1_2:52193718-52193737 Msa0076230:exon 35.0%
!! GGTTGATATTTTTACTGGAG+TGG - chr1_2:52193723-52193742 Msa0076230:exon 35.0%
!! GAATGTGATTGCAGTTTTGA+TGG - chr1_2:52193808-52193827 Msa0076230:five_prime_UTR 35.0%
!! AGTTTTGATGGACAACCATA+AGG - chr1_2:52193820-52193839 Msa0076230:five_prime_UTR 35.0%
GGATAAGCCACATATATATC+TGG + chr1_2:52194277-52194296 None:intergenic 35.0%
AATAGTGGCTGCAACTTCTA+TGG - chr1_2:52188916-52188935 Msa0076230:three_prime_UTR 40.0%
TCTTTCTGTTGTTGGTGTGT+TGG + chr1_2:52188945-52188964 None:intergenic 40.0%
CACCAACAACAGAAAGATAG+TGG - chr1_2:52188948-52188967 Msa0076230:three_prime_UTR 40.0%
TCCCACTATCTTTCTGTTGT+TGG + chr1_2:52188953-52188972 None:intergenic 40.0%
AAGGGTTTGAAGATGAAAGG+AGG + chr1_2:52189053-52189072 None:intergenic 40.0%
GAGAAGGGTTTGAAGATGAA+AGG + chr1_2:52189056-52189075 None:intergenic 40.0%
TATGCAGGAAAGGGTCAAAT+GGG + chr1_2:52189144-52189163 None:intergenic 40.0%
ATATGCAGGAAAGGGTCAAA+TGG + chr1_2:52189145-52189164 None:intergenic 40.0%
! TTTGAGGTTGAGGGTAATAG+TGG - chr1_2:52189423-52189442 Msa0076230:CDS 40.0%
TTCGTGTATTATGCCCTATG+AGG - chr1_2:52189547-52189566 Msa0076230:intron 40.0%
CCATTGAAGAAAGTCCTCAT+AGG + chr1_2:52189564-52189583 None:intergenic 40.0%
CCTATGAGGACTTTCTTCAA+TGG - chr1_2:52189561-52189580 Msa0076230:intron 40.0%
TCAACTTGAAGCCATGATTG+TGG + chr1_2:52189624-52189643 None:intergenic 40.0%
!! TCATGGCTTCAAGTTGAAAG+AGG - chr1_2:52189627-52189646 Msa0076230:CDS 40.0%
!! CATGGCTTCAAGTTGAAAGA+GGG - chr1_2:52189628-52189647 Msa0076230:CDS 40.0%
GAGGATTGTGGTGACAATTT+GGG + chr1_2:52189660-52189679 None:intergenic 40.0%
AGAGGATTGTGGTGACAATT+TGG + chr1_2:52189661-52189680 None:intergenic 40.0%
ATTGATGCAGAAGAGGATTG+TGG + chr1_2:52189672-52189691 None:intergenic 40.0%
TTAAAGAACGGTAACACAGG+TGG + chr1_2:52189818-52189837 None:intergenic 40.0%
GGTTTAAAGAACGGTAACAC+AGG + chr1_2:52189821-52189840 None:intergenic 40.0%
ACTTGAGTCATGTTCTTCAC+AGG - chr1_2:52189880-52189899 Msa0076230:intron 40.0%
GCATCAGTTTAACATCACCA+AGG + chr1_2:52189949-52189968 None:intergenic 40.0%
! AGATGATTGTATTTGGGGCA+TGG - chr1_2:52190014-52190033 Msa0076230:intron 40.0%
GGTTGAAATATGAGAAGCAG+GGG - chr1_2:52190035-52190054 Msa0076230:intron 40.0%
GTTGAAATATGAGAAGCAGG+GGG - chr1_2:52190036-52190055 Msa0076230:intron 40.0%
GAACTTACCTTGACATCAGA+AGG + chr1_2:52190136-52190155 None:intergenic 40.0%
CATTCATCAAAACACTCTCC+TGG + chr1_2:52190159-52190178 None:intergenic 40.0%
!!! CAGGAGAGTGTTTTGATGAA+TGG - chr1_2:52190157-52190176 Msa0076230:intron 40.0%
CCATTTAACATCGCACGAAA+CGG + chr1_2:52190268-52190287 None:intergenic 40.0%
CGTTTCGTGCGATGTTAAAT+GGG - chr1_2:52190266-52190285 Msa0076230:intron 40.0%
GTTTCGTGCGATGTTAAATG+GGG - chr1_2:52190267-52190286 Msa0076230:intron 40.0%
CGATGTTAAATGGGGATTTC+TGG - chr1_2:52190275-52190294 Msa0076230:intron 40.0%
GAGTTCGATAGCATCTTCTT+TGG + chr1_2:52190506-52190525 None:intergenic 40.0%
AGAAGATGCTATCGAACTCA+TGG - chr1_2:52190507-52190526 Msa0076230:intron 40.0%
CTTGTAAACAAGAAGCTGCA+AGG + chr1_2:52190561-52190580 None:intergenic 40.0%
AGTGAGGAAGATCACGTAAA+AGG + chr1_2:52190585-52190604 None:intergenic 40.0%
TCATGCTAATAAGCAGCAGT+TGG - chr1_2:52190639-52190658 Msa0076230:CDS 40.0%
! AGACACAACAGCTCATTTTC+TGG - chr1_2:52190738-52190757 Msa0076230:CDS 40.0%
!! CAACAGCTCATTTTCTGGAA+AGG - chr1_2:52190743-52190762 Msa0076230:CDS 40.0%
TACACATCCCAAACGATGAA+AGG + chr1_2:52190809-52190828 None:intergenic 40.0%
GGCCATGTTTATTCTGTTAC+TGG - chr1_2:52190889-52190908 Msa0076230:intron 40.0%
! GCTCGACTTGACTCTATAAA+AGG - chr1_2:52190916-52190935 Msa0076230:intron 40.0%
! CAAGTTCAGTTGCTTTCTCA+AGG + chr1_2:52191056-52191075 None:intergenic 40.0%
TGTAGGGATATACAAGAGTG+GGG + chr1_2:52191080-52191099 None:intergenic 40.0%
CATGTAGGGATATACAAGAG+TGG + chr1_2:52191082-52191101 None:intergenic 40.0%
ATAGGGCTGCATCTTTAATG+AGG - chr1_2:52191103-52191122 Msa0076230:intron 40.0%
ATGAGGACAGAGAATTCTCA+AGG - chr1_2:52191120-52191139 Msa0076230:intron 40.0%
!! GTGCACTGGCTGAAATTAAT+CGG - chr1_2:52191142-52191161 Msa0076230:intron 40.0%
AATCGCTTGAACATCACGAA+GGG + chr1_2:52191247-52191266 None:intergenic 40.0%
TCCGCGTTATAGAATGTTTG+AGG - chr1_2:52191278-52191297 Msa0076230:intron 40.0%
CCCTCAAACATTCTATAACG+CGG + chr1_2:52191282-52191301 None:intergenic 40.0%
CCGCGTTATAGAATGTTTGA+GGG - chr1_2:52191279-52191298 Msa0076230:intron 40.0%
CGCGTTATAGAATGTTTGAG+GGG - chr1_2:52191280-52191299 Msa0076230:intron 40.0%
GCATGTTGAACATTTGACGA+CGG - chr1_2:52191341-52191360 Msa0076230:intron 40.0%
GGGCACAATTATATGACTGT+TGG - chr1_2:52191373-52191392 Msa0076230:intron 40.0%
TCAGATGCTTGAATCTGATG+CGG - chr1_2:52191434-52191453 Msa0076230:intron 40.0%
ATTCACTCACATCATACCTG+AGG + chr1_2:52191497-52191516 None:intergenic 40.0%
TAACTCCACTGTTGAACCTT+AGG - chr1_2:52191561-52191580 Msa0076230:intron 40.0%
AACTCCACTGTTGAACCTTA+GGG - chr1_2:52191562-52191581 Msa0076230:intron 40.0%
TATTCCCTAAGGTTCAACAG+TGG + chr1_2:52191569-52191588 None:intergenic 40.0%
ACTGTTGAACCTTAGGGAAT+AGG - chr1_2:52191568-52191587 Msa0076230:intron 40.0%
TCAGAACATCCTATTCCCTA+AGG + chr1_2:52191580-52191599 None:intergenic 40.0%
AGGGAATAGGATGTTCTGAT+TGG - chr1_2:52191581-52191600 Msa0076230:intron 40.0%
TCGCAAGTTCATGACTAAGA+AGG - chr1_2:52191642-52191661 Msa0076230:intron 40.0%
AGCGAAAGAACTCCAACATT+GGG + chr1_2:52191802-52191821 None:intergenic 40.0%
TGGCATTGTCATTAATGACG+TGG - chr1_2:52191826-52191845 Msa0076230:CDS 40.0%
!!! CGTCTATTTTGATGTGGCAA+TGG - chr1_2:52191862-52191881 Msa0076230:CDS 40.0%
TTGCTGATGTGACAATGAAG+TGG + chr1_2:52191909-52191928 None:intergenic 40.0%
AAACAGAGTGACCAAAAACC+CGG - chr1_2:52191974-52191993 Msa0076230:CDS 40.0%
!!! AACCCGGTTTTAGAAATAGG+GGG - chr1_2:52191990-52192009 Msa0076230:CDS 40.0%
!! AGTCCCCCTATTTCTAAAAC+CGG + chr1_2:52191996-52192015 None:intergenic 40.0%
! GCACTTTTGATCCCCATATT+TGG + chr1_2:52192035-52192054 None:intergenic 40.0%
TACACGTACATAACAGGAAG+AGG + chr1_2:52192086-52192105 None:intergenic 40.0%
GTTTCAGACACCAATACATG+TGG - chr1_2:52192170-52192189 Msa0076230:CDS 40.0%
ACGTAAAGCTTGGATCTCAA+AGG + chr1_2:52192338-52192357 None:intergenic 40.0%
AATGCATATTCTCCTGCTTG+AGG - chr1_2:52192375-52192394 Msa0076230:CDS 40.0%
ATGAAAGAAGATCCTCAAGC+AGG + chr1_2:52192390-52192409 None:intergenic 40.0%
ATTTAGGCTAAACTGTCCTG+AGG - chr1_2:52192472-52192491 Msa0076230:CDS 40.0%
AAAGACTTGTATATGAGGGG+TGG - chr1_2:52192546-52192565 Msa0076230:CDS 40.0%
!! GGGTGGATTTTGTATGATAC+TGG - chr1_2:52192563-52192582 Msa0076230:CDS 40.0%
GATACTGGTCATTATGAGGA+AGG - chr1_2:52192578-52192597 Msa0076230:CDS 40.0%
TTTCCTAAAGGCCTATGCAT+TGG - chr1_2:52192652-52192671 Msa0076230:CDS 40.0%
TATTGAACCAAGACCAGAGT+CGG + chr1_2:52192678-52192697 None:intergenic 40.0%
ATTATCAGAAGGACACCTCA+AGG + chr1_2:52192735-52192754 None:intergenic 40.0%
AACAATCAGTTACCACACAC+AGG - chr1_2:52192817-52192836 Msa0076230:CDS 40.0%
GTTTGTACTTAACCTGTGTG+TGG + chr1_2:52192832-52192851 None:intergenic 40.0%
TGTGGTAAGATAACATGCAG+GGG - chr1_2:52192950-52192969 Msa0076230:CDS 40.0%
! AGATAACATGCAGGGGTATA+AGG - chr1_2:52192957-52192976 Msa0076230:CDS 40.0%
TACGAAGTCAGTCAATGTGA+TGG - chr1_2:52193044-52193063 Msa0076230:CDS 40.0%
TCAGGGCCTGGTAAATTAAA+TGG + chr1_2:52193401-52193420 None:intergenic 40.0%
TAATATAGCAATCGGCTGCT+TGG + chr1_2:52193464-52193483 None:intergenic 40.0%
!!! CTCGAGTATGGTGGATTTTA+AGG + chr1_2:52193491-52193510 None:intergenic 40.0%
GAAGGCAAAAAACAATGCGT+CGG - chr1_2:52193590-52193609 Msa0076230:intron 40.0%
TATGAGAAGAGATCCGAGTA+TGG - chr1_2:52193615-52193634 Msa0076230:CDS 40.0%
ATGAGAAGAGATCCGAGTAT+GGG - chr1_2:52193616-52193635 Msa0076230:CDS 40.0%
! CCAACATTTCTTGGTGGTTT+GGG + chr1_2:52193988-52194007 None:intergenic 40.0%
! TCCAACATTTCTTGGTGGTT+TGG + chr1_2:52193989-52194008 None:intergenic 40.0%
GAAGTTCCAACATTTCTTGG+TGG + chr1_2:52193994-52194013 None:intergenic 40.0%
GCTGATGATTGTACAAATGC+TGG + chr1_2:52194078-52194097 None:intergenic 40.0%
!!! TGGGTACGAAAGTTTTGGCT+AGG + chr1_2:52189125-52189144 None:intergenic 45.0%
! GGTTGTTGTTGTGGAGATCT+GGG - chr1_2:52189518-52189537 Msa0076230:intron 45.0%
!! CTAGTTGCTGGTTTGTTGAC+TGG - chr1_2:52190064-52190083 Msa0076230:intron 45.0%
TGATGTCAAGGTAAGTTCCC+AGG - chr1_2:52190138-52190157 Msa0076230:intron 45.0%
CCGTTTCGTGCGATGTTAAA+TGG - chr1_2:52190265-52190284 Msa0076230:intron 45.0%
CTTATCGCTCTTATACCCGA+AGG + chr1_2:52190346-52190365 None:intergenic 45.0%
CTCACTGCTTGAGCGATAAT+CGG - chr1_2:52190599-52190618 Msa0076230:CDS 45.0%
TCACTGCTTGAGCGATAATC+GGG - chr1_2:52190600-52190619 Msa0076230:CDS 45.0%
TAAGCAGCAGTTGGCAGTTA+TGG - chr1_2:52190648-52190667 Msa0076230:CDS 45.0%
TTGGCAGTTATGGTAGGTCA+AGG - chr1_2:52190658-52190677 Msa0076230:CDS 45.0%
AAGCAACAAGCAGAGACTGT+TGG - chr1_2:52190783-52190802 Msa0076230:CDS 45.0%
!! ACTGTTGGCCTTTCATCGTT+TGG - chr1_2:52190798-52190817 Msa0076230:CDS 45.0%
!! CTGTTGGCCTTTCATCGTTT+GGG - chr1_2:52190799-52190818 Msa0076230:CDS 45.0%
TGGGATGTGTAAGACTCTTG+CGG - chr1_2:52190818-52190837 Msa0076230:intron 45.0%
GATGCAGCCCTATACATGTA+GGG + chr1_2:52191096-52191115 None:intergenic 45.0%
AGATGCAGCCCTATACATGT+AGG + chr1_2:52191097-52191116 None:intergenic 45.0%
AGAGAATTCTCAAGGTGCAC+TGG - chr1_2:52191128-52191147 Msa0076230:intron 45.0%
CGTTAGAATGCTTGGAACTG+CGG - chr1_2:52191184-52191203 Msa0076230:intron 45.0%
GAATCGCTTGAACATCACGA+AGG + chr1_2:52191248-52191267 None:intergenic 45.0%
ATTTGACGACGGCAGATTGT+TGG - chr1_2:52191352-52191371 Msa0076230:intron 45.0%
TTTGACGACGGCAGATTGTT+GGG - chr1_2:52191353-52191372 Msa0076230:intron 45.0%
CTTGAATCTGATGCGGCAAA+AGG - chr1_2:52191441-52191460 Msa0076230:intron 45.0%
TGCCCTGTTTCACAACTTTC+AGG - chr1_2:52191761-52191780 Msa0076230:intron 45.0%
CAGCGAAAGAACTCCAACAT+TGG + chr1_2:52191803-52191822 None:intergenic 45.0%
TTGGAGTTCTTTCGCTGATG+TGG - chr1_2:52191806-52191825 Msa0076230:CDS 45.0%
!!! GTGACCCGTCTATTTTGATG+TGG - chr1_2:52191856-52191875 Msa0076230:CDS 45.0%
!! GTCCCCCTATTTCTAAAACC+GGG + chr1_2:52191995-52192014 None:intergenic 45.0%
GAGATCCAAGCTTTACGTCT+TGG - chr1_2:52192340-52192359 Msa0076230:CDS 45.0%
GTACTCCAAGACGTAAAGCT+TGG + chr1_2:52192348-52192367 None:intergenic 45.0%
TGCGGAGTTTACAGTTAGCT+TGG - chr1_2:52192501-52192520 Msa0076230:CDS 45.0%
CCTTTGCGCAGATTATCAGA+AGG + chr1_2:52192746-52192765 None:intergenic 45.0%
CCTTCTGATAATCTGCGCAA+AGG - chr1_2:52192743-52192762 Msa0076230:CDS 45.0%
TGATAATCTGCGCAAAGGTC+AGG - chr1_2:52192748-52192767 Msa0076230:CDS 45.0%
! AGTTCTGATGTGTAGGCTCT+AGG - chr1_2:52192915-52192934 Msa0076230:CDS 45.0%
! GTCAATGTGATGGAGAGAAG+AGG - chr1_2:52193054-52193073 Msa0076230:CDS 45.0%
!! AGAAGAGGAAGTGCTAGCTA+GGG - chr1_2:52193069-52193088 Msa0076230:CDS 45.0%
TGAGAAGAGATCCGAGTATG+GGG - chr1_2:52193617-52193636 Msa0076230:CDS 45.0%
CACAAAGGCAGATCTTGAGA+TGG - chr1_2:52193650-52193669 Msa0076230:CDS 45.0%
CTGTAAGGATACACACGAAG+TGG + chr1_2:52193690-52193709 None:intergenic 45.0%
GATGGACAACCATAAGGAAC+TGG - chr1_2:52193826-52193845 Msa0076230:five_prime_UTR 45.0%
CAATGGCTTCCAGTTCCTTA+TGG + chr1_2:52193838-52193857 None:intergenic 45.0%
!! AGCTCTAGATAGCTCAGCAA+TGG + chr1_2:52193855-52193874 None:intergenic 45.0%
CCCAAACCACCAAGAAATGT+TGG - chr1_2:52193985-52194004 Msa0076230:five_prime_UTR 45.0%
CAAACTTGACTCATGGTTCG+TGG + chr1_2:52194033-52194052 None:intergenic 45.0%
TAGCTCGCAAACTTGACTCA+TGG + chr1_2:52194040-52194059 None:intergenic 45.0%
AGTCAAGTTTGCGAGCTATG+AGG - chr1_2:52194042-52194061 Msa0076230:five_prime_UTR 45.0%
! GGGCATTCCTCTCTTTAGAA+AGG + chr1_2:52194204-52194223 None:intergenic 45.0%
!! AAATAAAAAATAAGATTAAT+GGG + chr1_2:52189262-52189281 None:intergenic 5.0%
!! AAAATAAAAAATAAGATTAA+TGG + chr1_2:52189263-52189282 None:intergenic 5.0%
! GGGTTGTTGTTGTGGAGATC+TGG - chr1_2:52189517-52189536 Msa0076230:intron 50.0%
CGAATATGGGCCGATAGATG+TGG - chr1_2:52190099-52190118 Msa0076230:intron 50.0%
! TTTCTGGGAATCGTCGTCTG+AGG - chr1_2:52190291-52190310 Msa0076230:intron 50.0%
CGATTATCGCTCAAGCAGTG+AGG + chr1_2:52190601-52190620 None:intergenic 50.0%
CAGCAGTTGGCAGTTATGGT+AGG - chr1_2:52190652-52190671 Msa0076230:CDS 50.0%
ATTTCCCCTGTCACTCGACT+CGG - chr1_2:52190976-52190995 Msa0076230:intron 50.0%
CATGCTCAAGCACAAGAGTG+CGG + chr1_2:52191326-52191345 None:intergenic 50.0%
GACAGTCATTGCTTCTCCTC+AGG - chr1_2:52191478-52191497 Msa0076230:intron 50.0%
CACTTCTCGAAGATGCCTTG+AGG - chr1_2:52192717-52192736 Msa0076230:CDS 50.0%
ATCTGCGCAAAGGTCAGGTA+CGG - chr1_2:52192753-52192772 Msa0076230:CDS 50.0%
!! GAGAAGAGGAAGTGCTAGCT+AGG - chr1_2:52193068-52193087 Msa0076230:CDS 50.0%
TCACAAAGCAAACGAGGCCT+TGG - chr1_2:52193241-52193260 Msa0076230:CDS 50.0%
TACCAGGCCCTGAACAATCT+TGG - chr1_2:52193408-52193427 Msa0076230:CDS 50.0%
TTCCAAGATTGTTCAGGGCC+TGG + chr1_2:52193413-52193432 None:intergenic 50.0%
! TGACAAGGCTGCTGCTTACA+AGG - chr1_2:52193548-52193567 Msa0076230:intron 50.0%
GAGTTCACGATCCCCATACT+CGG + chr1_2:52193631-52193650 None:intergenic 50.0%
TGGGGATCGTGAACTCACAA+AGG - chr1_2:52193635-52193654 Msa0076230:CDS 50.0%
CCTGCTGCTCGATATCTGTA+AGG + chr1_2:52193705-52193724 None:intergenic 50.0%
CCTTACAGATATCGAGCAGC+AGG - chr1_2:52193702-52193721 Msa0076230:CDS 50.0%
GCAGCGTTCCATGAACACAA+GGG - chr1_2:52193914-52193933 Msa0076230:five_prime_UTR 50.0%
CAGCGTTCCATGAACACAAG+GGG - chr1_2:52193915-52193934 Msa0076230:five_prime_UTR 50.0%
AGCGTTCCATGAACACAAGG+GGG - chr1_2:52193916-52193935 Msa0076230:five_prime_UTR 50.0%
ACGGTAACACAGGTGGCTGT+TGG + chr1_2:52189811-52189830 None:intergenic 55.0%
AAAGAAGCCTCCGCGAAGCA+TGG - chr1_2:52189969-52189988 Msa0076230:intron 55.0%
CAGGGGGAAGAACTAGTTGC+TGG - chr1_2:52190052-52190071 Msa0076230:intron 55.0%
CTGCTTGAGCGATAATCGGG+TGG - chr1_2:52190603-52190622 Msa0076230:CDS 55.0%
CTTGAGCGATAATCGGGTGG+TGG - chr1_2:52190606-52190625 Msa0076230:CDS 55.0%
TCCATCCGAGTCGAGTGACA+GGG + chr1_2:52190984-52191003 None:intergenic 55.0%
ATCCATCCGAGTCGAGTGAC+AGG + chr1_2:52190985-52191004 None:intergenic 55.0%
TTCCACCTCGCACCCAATGT+TGG - chr1_2:52191787-52191806 Msa0076230:intron 55.0%
GAACTCCAACATTGGGTGCG+AGG + chr1_2:52191795-52191814 None:intergenic 55.0%
CACAGACACAAACACGGCAC+TGG + chr1_2:52192251-52192270 None:intergenic 55.0%
ACTGTCCTGAGGCAGCTATG+CGG - chr1_2:52192483-52192502 Msa0076230:CDS 55.0%
AAACTCCGCATAGCTGCCTC+AGG + chr1_2:52192491-52192510 None:intergenic 55.0%
CGGCCAATGCATAGGCCTTT+AGG + chr1_2:52192658-52192677 None:intergenic 55.0%
ACCAGAGTCGGCCAATGCAT+AGG + chr1_2:52192666-52192685 None:intergenic 55.0%
!! AGAGGAAGTGCTAGCTAGGG+AGG - chr1_2:52193072-52193091 Msa0076230:CDS 55.0%
CACCATACTCGAGCCCATCA+GGG - chr1_2:52193498-52193517 Msa0076230:intron 55.0%
AACACGCGCAAGACCCTGAT+GGG + chr1_2:52193514-52193533 None:intergenic 55.0%
ACGCTGCGCGTAGATGTAAG+AGG + chr1_2:52193901-52193920 None:intergenic 55.0%
CGCAGCGTTCCATGAACACA+AGG - chr1_2:52193913-52193932 Msa0076230:five_prime_UTR 55.0%
GGACATCCCCCTTGTGTTCA+TGG + chr1_2:52193925-52193944 None:intergenic 55.0%
GACAGTCTCTTAGCGCACTC+AGG + chr1_2:52193946-52193965 None:intergenic 55.0%
AGACTGTCGTGCTGCACTCT+CGG - chr1_2:52193958-52193977 Msa0076230:five_prime_UTR 55.0%
CCATCCGAGTCGAGTGACAG+GGG + chr1_2:52190983-52191002 None:intergenic 60.0%
CTCCAACATTGGGTGCGAGG+TGG + chr1_2:52191792-52191811 None:intergenic 60.0%
! GCCTATGCATTGGCCGACTC+TGG - chr1_2:52192662-52192681 Msa0076230:CDS 60.0%
! GCATTGGCCGACTCTGGTCT+TGG - chr1_2:52192668-52192687 Msa0076230:CDS 60.0%
!! CCTGATGGGCTCGAGTATGG+TGG + chr1_2:52193500-52193519 None:intergenic 60.0%
CCACCATACTCGAGCCCATC+AGG - chr1_2:52193497-52193516 Msa0076230:intron 60.0%
!! GACCCTGATGGGCTCGAGTA+TGG + chr1_2:52193503-52193522 None:intergenic 60.0%
GAACACGCGCAAGACCCTGA+TGG + chr1_2:52193515-52193534 None:intergenic 60.0%
GAAGCCTCCGCGAAGCATGG+CGG - chr1_2:52189972-52189991 Msa0076230:intron 65.0%
TCGCTCTCCGCCATGCTTCG+CGG + chr1_2:52189982-52190001 None:intergenic 65.0%
!! CCCCTGTCACTCGACTCGGA+TGG - chr1_2:52190980-52190999 Msa0076230:intron 65.0%
CTGTCGTGCTGCACTCTCGG+TGG - chr1_2:52193961-52193980 Msa0076230:five_prime_UTR 65.0%
CTCTCCGCCATGCTTCGCGG+AGG + chr1_2:52189979-52189998 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 52188911 52194385 52188911 ID=Msa0076230;Name=Msa0076230
chr1_2 mRNA 52188911 52194385 52188911 ID=Msa0076230-mRNA-1;Parent=Msa0076230;Name=Msa0076230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=653|1|1|1|1|1|5|343|886
chr1_2 exon 52188911 52189474 52188911 ID=Msa0076230-mRNA-1:exon:16133;Parent=Msa0076230-mRNA-1
chr1_2 exon 52189573 52189882 52189573 ID=Msa0076230-mRNA-1:exon:16132;Parent=Msa0076230-mRNA-1
chr1_2 exon 52190527 52190818 52190527 ID=Msa0076230-mRNA-1:exon:16131;Parent=Msa0076230-mRNA-1
chr1_2 exon 52191797 52193506 52191797 ID=Msa0076230-mRNA-1:exon:16130;Parent=Msa0076230-mRNA-1
chr1_2 exon 52193605 52194385 52193605 ID=Msa0076230-mRNA-1:exon:16129;Parent=Msa0076230-mRNA-1
chr1_2 five_prime_UTR 52193733 52194385 52193733 ID=Msa0076230-mRNA-1:five_prime_utr;Parent=Msa0076230-mRNA-1
chr1_2 CDS 52193605 52193732 52193605 ID=Msa0076230-mRNA-1:cds;Parent=Msa0076230-mRNA-1
chr1_2 CDS 52191797 52193506 52191797 ID=Msa0076230-mRNA-1:cds;Parent=Msa0076230-mRNA-1
chr1_2 CDS 52190527 52190818 52190527 ID=Msa0076230-mRNA-1:cds;Parent=Msa0076230-mRNA-1
chr1_2 CDS 52189573 52189882 52189573 ID=Msa0076230-mRNA-1:cds;Parent=Msa0076230-mRNA-1
chr1_2 CDS 52189254 52189474 52189254 ID=Msa0076230-mRNA-1:cds;Parent=Msa0076230-mRNA-1
chr1_2 three_prime_UTR 52188911 52189253 52188911 ID=Msa0076230-mRNA-1:three_prime_utr;Parent=Msa0076230-mRNA-1
Gene Sequence

>Msa0076230

ATGAGGACTTTCTTCAATGGAGAATCATCCAAAGAAGAGCACTTAAGTTCTCTTAATCCACAATCATGGCTTCAAGTTGAAAGAGGGAAGCTTCCCAAATTGTCACCACAATCCTCTTCTGCATCAATTGAATCTCTAATCAAGGTCCAACAGCCACCTGTGTTACCGTTCTTTAAACCGGTTGATTATGTCGAAGTTTTAGCTCAAATCCATGAAGAACTTGAGTCATGTTCTTCACAGGAACAGTCAAATCTGTTTCTGTTTCAATATCAGGTTTTTAAAGGCCTTGGTGATGTTAAACTGATGCAAAGAAGCCTCCGCGAAGCATGGCGGAGAGCGAGTTCTGTTCACGAGATGATTGTATTTGGGGCATGGTTGAAATATGAGAAGCAGGGGGAAGAACTAGTTGCTGGTTTGTTGACTGGTAAACGTCAAAACGAATATGGGCCGATAGATGTGGAGTCTCATATTCCTTCTGATGTCAAGGTAAGTTCCCAGGAGAGTGTTTTGATGAATGGGAACAACACTTCACAATATGTTGTTTTTATAATTGGCGATGAGAGGATAGTCTGTGATAGACAAAAGTTTTCTGAACTGTCAGCGCCGTTTCGTGCGATGTTAAATGGGGATTTCTGGGAATCGTCGTCTGAGGCTATAGATTTGTCTGAAAACAATATATCTCCTTCGGGTATAAGAGCGATAAGTTATTTCAGTATGACTGGTAGTTTACTTGAACAAGTCTCTCCAAAACTTTTGTTGGAGATATTAGTTTTTTCCAACAAGTATTGTTGTGATAGATTAAAAGAGGCTTGTGATAGAAGACTTGCATCCTTAGTTACTTCCAAAGAAGATGCTATCGAACTCATGGAATATGCTCTTGATGAGAACTCAGTTGTCCTTGCAGCTTCTTGTTTACAAGTCCTTTTACGTGATCTTCCTCACTGCTTGAGCGATAATCGGGTGGTGGATATATTTCTTCATGCTAATAAGCAGCAGTTGGCAGTTATGGTAGGTCAAGGTTTATTTGCGCTTTTCTGCTTCTTAAGCGAAGTTTCTATGAACCTTAACTCTAGTTCAGACACAACAGCTCATTTTCTGGAAAGGTTAGCTGATTTTGCTGAAAGCAACAAGCAGAGACTGTTGGCCTTTCATCGTTTGGGATGTGTAAGACTCTTGCGGAAAGAATACGACGAAGCTCGCTGTCTTTTTGAGAGCGCTGTAAATAATGGCCATGTTTATTCTGTTACTGGTTTAGCTCGACTTGACTCTATAAAAGGTGAGAAGGATTTATCTTATGAGAAGATCAGCTCAGTCATTTCCCCTGTCACTCGACTCGGATGGATGTACCAAGAAAGATCACTATATTGTGATGATGATTTGAGATGGAAAGACCTTGAGAAAGCAACTGAACTTGACCCCACTCTTGTATATCCCTACATGTATAGGGCTGCATCTTTAATGAGGACAGAGAATTCTCAAGGTGCACTGGCTGAAATTAATCGGATACTTGGCTTTAAACTTTCGTTAGAATGCTTGGAACTGCGGTTTTTTATATATCTGGCTCTTGAGGACTACAAAGCAGCCCTTCGTGATGTTCAAGCGATTCTTACTTTGTGTCCGCGTTATAGAATGTTTGAGGGGCGCGTAGCTGCATCTCAACTCCGCACTCTTGTGCTTGAGCATGTTGAACATTTGACGACGGCAGATTGTTGGGCACAATTATATGACTGTTGGTCTGCTGTTGATGATATTGAGTCTCTATCTGTTATTTATCAGATGCTTGAATCTGATGCGGCAAAAGGTGTTCTATACTTCAGACAGTCATTGCTTCTCCTCAGGCTAAACTGTCCTGAGGCAGCTATGCGGAGTTTACAGTTAGCTTGGCAACATGCATCAAGTGAGCATGAAAGACTTGTATATGAGGGGTGGATTTTGTATGATACTGGTCATTATGAGGAAGGGCTCCAAAAAGCTGAAGAGTCTATTTGCATTAAAAGGTCTTTTGAGGCATTTTTCCTAAAGGCCTATGCATTGGCCGACTCTGGTCTTGGTTCAATATGTTCTTCAACTGTTATTTCACTTCTCGAAGATGCCTTGAGGTGTCCTTCTGATAATCTGCGCAAAGGTCAGGCCCTGAACAATCTTGGAAGTGTTTTTGTTGATCATGGAAAACTGGACCAAGCAGCCGATTGCTATATTAAAGCCCTTAAAATCCACCATACTCGAGCCCATCAGGGTCTTGCGCGTGTTCATTTTCTAAAAAATGACAAGGCTGCTGCTTACAAGGAAATGACCAAACTTATCGAGAAGGCAAAAAACAATGCGTCGGCGTATGAGAAGAGATCCGAGTATGGGGATCGTGAACTCACAAAGGCAGATCTTGAGATGGTGACTAGACTAGATCCACTTCGTGTGTATCCTTACAGATATCGAGCAGCAGTTTTGATGGACAACCATAAGGAACTGGAAGCCATTGCTGAGCTATCTAGAGCTATTGCATTTAAAGCTGATTTGCACCTCTTACATCTACGCGCAGCGTTCCATGAACACAAGGGGGATGTCCTGAGTGCGCTAAGAGACTGTCGTGCTGCACTCTCGGTGGACCCAAACCACCAAGAAATGTTGGAACTTCATACGCGTGTTAATAGCCACGAACCATGA
Protein sequence

>Msa0076230

MRTFFNGESSKEEHLSSLNPQSWLQVERGKLPKLSPQSSSASIESLIKVQQPPVLPFFKPVDYVEVLAQIHEELESCSSQEQSNLFLFQYQVFKGLGDVKLMQRSLREAWRRASSVHEMIVFGAWLKYEKQGEELVAGLLTGKRQNEYGPIDVESHIPSDVKVSSQESVLMNGNNTSQYVVFIIGDERIVCDRQKFSELSAPFRAMLNGDFWESSSEAIDLSENNISPSGIRAISYFSMTGSLLEQVSPKLLLEILVFSNKYCCDRLKEACDRRLASLVTSKEDAIELMEYALDENSVVLAASCLQVLLRDLPHCLSDNRVVDIFLHANKQQLAVMVGQGLFALFCFLSEVSMNLNSSSDTTAHFLERLADFAESNKQRLLAFHRLGCVRLLRKEYDEARCLFESAVNNGHVYSVTGLARLDSIKGEKDLSYEKISSVISPVTRLGWMYQERSLYCDDDLRWKDLEKATELDPTLVYPYMYRAASLMRTENSQGALAEINRILGFKLSLECLELRFFIYLALEDYKAALRDVQAILTLCPRYRMFEGRVAASQLRTLVLEHVEHLTTADCWAQLYDCWSAVDDIESLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLAWQHASSEHERLVYEGWILYDTGHYEEGLQKAEESICIKRSFEAFFLKAYALADSGLGSICSSTVISLLEDALRCPSDNLRKGQALNNLGSVFVDHGKLDQAADCYIKALKIHHTRAHQGLARVHFLKNDKAAAYKEMTKLIEKAKNNASAYEKRSEYGDRELTKADLEMVTRLDPLRVYPYRYRAAVLMDNHKELEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLSALRDCRAALSVDPNHQEMLELHTRVNSHEP*