AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124260 MtrunA17_Chr1g0185181 98.646 886 12 0 1 886 1 886 0.0 1805
Msa0124260 MtrunA17_Chr4g0005681 50.642 857 400 4 46 880 88 943 0.0 818
Msa0124260 MtrunA17_Chr3g0105811 47.418 852 422 6 51 881 74 920 0.0 763
Msa0124260 MtrunA17_Chr7g0243131 56.058 685 300 1 196 880 1 684 0.0 741
Msa0124260 MtrunA17_Chr7g0243111 35.345 116 64 3 29 137 62 173 8.61e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124260 AT4G02680.1 68.166 889 279 3 1 886 1 888 0.0 1204
Msa0124260 AT3G51770.2 51.059 850 399 5 51 886 109 955 0.0 830
Msa0124260 AT3G51770.1 51.059 850 399 5 51 886 101 947 0.0 830
Msa0124260 AT5G58550.1 47.128 853 425 5 51 880 60 909 0.0 740

Find 223 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATATAAATTACAAAATT+TGG 0.054987 1_3:+51938161 None:intergenic
CCGTTTCGTGCGATGTTAAA+TGG 0.150939 1_3:-51942119 Msa0124260:CDS
CGATGTTAAATGGGGATTTC+TGG 0.185566 1_3:-51942109 Msa0124260:CDS
AGAGGATTGTGGTGACAATT+TGG 0.210778 1_3:+51942726 None:intergenic
GGCCATGTTTATTCTGTTAC+TGG 0.212572 1_3:-51941495 Msa0124260:CDS
GTTCACGAGATGATTGTATT+TGG 0.228920 1_3:-51942377 Msa0124260:CDS
GGTAAACGTCAAAACGAATA+TGG 0.242747 1_3:-51942299 Msa0124260:CDS
TCCCACTATCTTTCTGTTGT+TGG 0.253404 1_3:+51943433 None:intergenic
CCAACATTTCTTGGTGGTTT+GGG 0.261388 1_3:+51938398 None:intergenic
AAGAGTCTATTTGCATTAAA+AGG 0.266900 1_3:-51939768 Msa0124260:CDS
GCTCGACTTGACTCTATAAA+AGG 0.277111 1_3:-51941468 Msa0124260:CDS
CACAATATAGTGATCTTTCT+TGG 0.280637 1_3:+51941376 None:intergenic
AGAACTTAAGTGCTCTTCTT+TGG 0.282552 1_3:+51942792 None:intergenic
TCCAACATTTCTTGGTGGTT+TGG 0.283235 1_3:+51938397 None:intergenic
TCTGTTTCTGTTTCAATATC+AGG 0.287273 1_3:-51942471 Msa0124260:CDS
TTCACGAGATGATTGTATTT+GGG 0.289372 1_3:-51942376 Msa0124260:CDS
TATGAAGTTCCAACATTTCT+TGG 0.289589 1_3:+51938389 None:intergenic
AATATCTCCAACAAAAGTTT+TGG 0.292623 1_3:+51941978 None:intergenic
TTGTATATCCCTACATGTAT+AGG 0.294097 1_3:-51941299 Msa0124260:CDS
CAATGGCTTCCAGTTCCTTA+TGG 0.297587 1_3:+51938548 None:intergenic
AAATCAAACCTTTACAAATC+AGG 0.298717 1_3:+51942899 None:intergenic
ACTGTTGGCCTTTCATCGTT+TGG 0.316810 1_3:-51941586 Msa0124260:CDS
GAATATAAATTACAAAATTT+GGG 0.324163 1_3:+51938162 None:intergenic
CGGCCAATGCATAGGCCTTT+AGG 0.325658 1_3:+51939728 None:intergenic
CTCACTGCTTGAGCGATAAT+CGG 0.328486 1_3:-51941785 Msa0124260:CDS
AATAGTGGCTGCAACTTCTA+TGG 0.330747 1_3:-51943467 Msa0124260:five_prime_UTR
GAGTTCGATAGCATCTTCTT+TGG 0.333660 1_3:+51941881 None:intergenic
CTGTTGGCCTTTCATCGTTT+GGG 0.333917 1_3:-51941585 Msa0124260:CDS
TTTATATTCTTGCTATCCTT+TGG 0.335070 1_3:-51938148 Msa0124260:three_prime_UTR
TTTGAGAGCGCTGTAAATAA+TGG 0.335421 1_3:-51941516 Msa0124260:CDS
GGGTTGTTGTTGTGGAGATC+TGG 0.339634 1_3:-51942867 Msa0124260:five_prime_UTR
CCACCATACTCGAGCCCATC+AGG 0.343844 1_3:-51938886 Msa0124260:CDS
AACATGACTCAAGTTCTTCA+TGG 0.345744 1_3:+51942513 None:intergenic
GACCCTGATGGGCTCGAGTA+TGG 0.351890 1_3:+51938883 None:intergenic
GAGGATTGTGGTGACAATTT+GGG 0.355746 1_3:+51942727 None:intergenic
AGTGAGGAAGATCACGTAAA+AGG 0.359579 1_3:+51941802 None:intergenic
AAACACTTCCAAGATTGTTC+AGG 0.361478 1_3:+51938967 None:intergenic
CGTTTCGTGCGATGTTAAAT+GGG 0.362269 1_3:-51942118 Msa0124260:CDS
TCAAATGGGTACGAAAGTTT+TGG 0.371428 1_3:+51943257 None:intergenic
TACCAGGCCCTGAACAATCT+TGG 0.373501 1_3:-51938975 Msa0124260:intron
TGAAAACAATATATCTCCTT+CGG 0.376028 1_3:-51942057 Msa0124260:CDS
TGTATATCCCTACATGTATA+GGG 0.376269 1_3:-51941298 Msa0124260:CDS
TCTATCACAACAATACTTGT+TGG 0.379743 1_3:+51941947 None:intergenic
TAAACTTTCGTTAGAATGCT+TGG 0.380126 1_3:-51941208 Msa0124260:CDS
TATGAGAAGAGATCCGAGTA+TGG 0.389290 1_3:-51938768 Msa0124260:CDS
GCATTGGCCGACTCTGGTCT+TGG 0.390640 1_3:-51939715 Msa0124260:CDS
GGTTGTTGTTGTGGAGATCT+GGG 0.406845 1_3:-51942866 Msa0124260:five_prime_UTR
TAAGCAGCAGTTGGCAGTTA+TGG 0.413136 1_3:-51941736 Msa0124260:CDS
ATCTTCTTTGGAAGTAACTA+AGG 0.415086 1_3:+51941893 None:intergenic
CCATTGAAGAAAGTCCTCAT+AGG 0.422614 1_3:+51942823 None:intergenic
TTTGAGGTTGAGGGTAATAG+TGG 0.424534 1_3:-51942961 Msa0124260:five_prime_UTR
GGATAAGCCACATATATATC+TGG 0.426164 1_3:+51938109 None:intergenic
AATAGTGGAATGTGACTAGT+AGG 0.428643 1_3:-51942946 Msa0124260:five_prime_UTR
GATGTTAAATGGGGATTTCT+GGG 0.432641 1_3:-51942108 Msa0124260:CDS
TTTGACGACGGCAGATTGTT+GGG 0.432677 1_3:-51941031 Msa0124260:CDS
GGGCATTCCTCTCTTTAGAA+AGG 0.433690 1_3:+51938182 None:intergenic
CAAGTTCAGTTGCTTTCTCA+AGG 0.436990 1_3:+51941331 None:intergenic
TCTTTCTGTTGTTGGTGTGT+TGG 0.439058 1_3:+51943441 None:intergenic
TGATAATCTGCGCAAAGGTC+AGG 0.439110 1_3:-51939635 Msa0124260:intron
TCCGCGTTATAGAATGTTTG+AGG 0.440849 1_3:-51941106 Msa0124260:CDS
TGTGTTACCGTTCTTTAAAC+CGG 0.443507 1_3:-51942564 Msa0124260:CDS
GTTCTCTTAATCCACAATCA+TGG 0.443606 1_3:-51942774 Msa0124260:CDS
GAAAACAATATATCTCCTTC+GGG 0.443685 1_3:-51942056 Msa0124260:CDS
CACCAACAACAGAAAGATAG+TGG 0.445917 1_3:-51943435 Msa0124260:five_prime_UTR
GTGCACTGGCTGAAATTAAT+CGG 0.446185 1_3:-51941242 Msa0124260:CDS
ATCCATCCGAGTCGAGTGAC+AGG 0.451951 1_3:+51941402 None:intergenic
CTAGTTGCTGGTTTGTTGAC+TGG 0.454339 1_3:-51942320 Msa0124260:CDS
GACAGTCATTGCTTCTCCTC+AGG 0.455426 1_3:-51940906 Msa0124260:intron
AAGGGCTTTAATATAGCAAT+CGG 0.456191 1_3:+51938914 None:intergenic
CATTCATCAAAACACTCTCC+TGG 0.459352 1_3:+51942228 None:intergenic
TGCGGAGTTTACAGTTAGCT+TGG 0.466730 1_3:-51939882 Msa0124260:CDS
ATTTGACGACGGCAGATTGT+TGG 0.467560 1_3:-51941032 Msa0124260:CDS
TCGCTCTCCGCCATGCTTCG+CGG 0.467797 1_3:+51942405 None:intergenic
GATGGACAACCATAAGGAAC+TGG 0.469162 1_3:-51938557 Msa0124260:CDS
GCCTATGCATTGGCCGACTC+TGG 0.469181 1_3:-51939721 Msa0124260:CDS
TTGTGTCTGAACTAGAGTTA+AGG 0.471631 1_3:+51941661 None:intergenic
TGACAAGGCTGCTGCTTACA+AGG 0.472593 1_3:-51938835 Msa0124260:CDS
CCATTTAACATCGCACGAAA+CGG 0.475186 1_3:+51942119 None:intergenic
AACACTTCCAAGATTGTTCA+GGG 0.476172 1_3:+51938968 None:intergenic
TAGAAAGGAAAATGATATCA+TGG 0.482871 1_3:+51938197 None:intergenic
GTATGATACTGGTCATTATG+AGG 0.485156 1_3:-51939809 Msa0124260:CDS
AGAAGATGCTATCGAACTCA+TGG 0.485643 1_3:-51941877 Msa0124260:CDS
TAATATAGCAATCGGCTGCT+TGG 0.486527 1_3:+51938922 None:intergenic
TTGTTGTGATAGATTAAAAG+AGG 0.488749 1_3:-51941937 Msa0124260:CDS
TCTTTGACCCTGATTTGTAA+AGG 0.491027 1_3:-51942907 Msa0124260:five_prime_UTR
CCGCGTTATAGAATGTTTGA+GGG 0.494477 1_3:-51941105 Msa0124260:CDS
TCACTGCTTGAGCGATAATC+GGG 0.495907 1_3:-51941784 Msa0124260:CDS
ATGGTTGAAATATGAGAAGC+AGG 0.502476 1_3:-51942351 Msa0124260:CDS
CTTGAATCTGATGCGGCAAA+AGG 0.502861 1_3:-51940943 Msa0124260:CDS
CCCAAACCACCAAGAAATGT+TGG 0.503161 1_3:-51938398 Msa0124260:CDS
AAAACTTCGACATAATCAAC+CGG 0.504243 1_3:+51942545 None:intergenic
ATATGCAGGAAAGGGTCAAA+TGG 0.505300 1_3:+51943242 None:intergenic
ATAAGTTATTTCAGTATGAC+TGG 0.510443 1_3:-51942023 Msa0124260:CDS
GAGAAGGGTTTGAAGATGAA+AGG 0.513472 1_3:+51943331 None:intergenic
AATCAAACCTTTACAAATCA+GGG 0.513574 1_3:+51942900 None:intergenic
GGTCCACATTCAACAAATAG+TGG 0.515032 1_3:-51943482 None:intergenic
GCGGTAATAAAATACATGTA+TGG 0.515136 1_3:+51938079 None:intergenic
GCTGAAATTAATCGGATACT+TGG 0.515937 1_3:-51941234 Msa0124260:CDS
AGACTGTCGTGCTGCACTCT+CGG 0.518787 1_3:-51938425 Msa0124260:CDS
AGAGAATTCTCAAGGTGCAC+TGG 0.519053 1_3:-51941256 Msa0124260:CDS
ATCTTACATTGATGCAGAAG+AGG 0.519598 1_3:+51942708 None:intergenic
GTAAACGTCAAAACGAATAT+GGG 0.522451 1_3:-51942298 Msa0124260:CDS
CCTGCTGCTCGATATCTGTA+AGG 0.523465 1_3:+51938681 None:intergenic
CCTATGAGGACTTTCTTCAA+TGG 0.524229 1_3:-51942823 Msa0124260:CDS
TTTCCTAAAGGCCTATGCAT+TGG 0.524357 1_3:-51939731 Msa0124260:CDS
AAATACATGTATGGTTGTTG+AGG 0.526165 1_3:+51938088 None:intergenic
ATTTCCCCTGTCACTCGACT+CGG 0.526456 1_3:-51941408 Msa0124260:CDS
AATAAGGAATATGCAGGAAA+GGG 0.526953 1_3:+51943234 None:intergenic
ATGAGAAGAGATCCGAGTAT+GGG 0.528955 1_3:-51938767 Msa0124260:CDS
CCTTACAGATATCGAGCAGC+AGG 0.529501 1_3:-51938681 Msa0124260:intron
GCAGAAAGAAAGAAATGAGA+AGG 0.531163 1_3:+51943315 None:intergenic
TCACGAGATGATTGTATTTG+GGG 0.532250 1_3:-51942375 Msa0124260:CDS
AGATGCAGCCCTATACATGT+AGG 0.534074 1_3:+51941290 None:intergenic
GAAGTTCCAACATTTCTTGG+TGG 0.535323 1_3:+51938392 None:intergenic
GAATAATAGGGTTGTTGTTG+TGG 0.535996 1_3:-51942875 Msa0124260:five_prime_UTR
AAATAAGGAATATGCAGGAA+AGG 0.537352 1_3:+51943233 None:intergenic
TTCGTGTATTATGCCCTATG+AGG 0.539626 1_3:-51942837 Msa0124260:exon
TATGCAGGAAAGGGTCAAAT+GGG 0.540408 1_3:+51943243 None:intergenic
GCATGAAAGACTTGTATATG+AGG 0.540587 1_3:-51939842 Msa0124260:CDS
GATACTGGTCATTATGAGGA+AGG 0.545226 1_3:-51939805 Msa0124260:CDS
ACTTGAGTCATGTTCTTCAC+AGG 0.545464 1_3:-51942504 Msa0124260:CDS
TCATGGCTTCAAGTTGAAAG+AGG 0.546316 1_3:-51942757 Msa0124260:CDS
CGCAGCGTTCCATGAACACA+AGG 0.546764 1_3:-51938470 Msa0124260:CDS
AAACTCCGCATAGCTGCCTC+AGG 0.547345 1_3:+51939895 None:intergenic
TGACTCTATAAAAGGTGAGA+AGG 0.549853 1_3:-51941460 Msa0124260:CDS
AAAGAAGCCTCCGCGAAGCA+TGG 0.550163 1_3:-51942415 Msa0124260:CDS
TTATAGTGAATCTCTAATCA+AGG 0.550486 1_3:-51942600 Msa0124260:intron
GCATCAAATAAGGAATATGC+AGG 0.550988 1_3:+51943228 None:intergenic
ACGGTAACACAGGTGGCTGT+TGG 0.551175 1_3:+51942576 None:intergenic
GCTGATGATTGTACAAATGC+TGG 0.551964 1_3:+51938308 None:intergenic
CGTTAGAATGCTTGGAACTG+CGG 0.552505 1_3:-51941200 Msa0124260:CDS
AACACGCGCAAGACCCTGAT+GGG 0.553316 1_3:+51938872 None:intergenic
ATGTAGGGATATACAAGAGT+GGG 0.553780 1_3:+51941306 None:intergenic
TTGGCAGTTATGGTAGGTCA+AGG 0.553971 1_3:-51941726 Msa0124260:CDS
TGTCTTATCTTGAAAAGAAG+AGG 0.556146 1_3:+51938035 None:intergenic
TCATGCTAATAAGCAGCAGT+TGG 0.558599 1_3:-51941745 Msa0124260:CDS
TCAACTTGAAGCCATGATTG+TGG 0.559627 1_3:+51942763 None:intergenic
CAAACTTGACTCATGGTTCG+TGG 0.559712 1_3:+51938353 None:intergenic
ATATGAGACTCCACATCTAT+CGG 0.562574 1_3:+51942275 None:intergenic
TACACATCCCAAACGATGAA+AGG 0.563344 1_3:+51941578 None:intergenic
CACTTCTCGAAGATGCCTTG+AGG 0.563644 1_3:-51939666 Msa0124260:CDS
CATTGAAGAAAGTCCTCATA+GGG 0.564706 1_3:+51942824 None:intergenic
AGATGATTGTATTTGGGGCA+TGG 0.568294 1_3:-51942370 Msa0124260:CDS
AGTCAAGTTTGCGAGCTATG+AGG 0.569226 1_3:-51938341 Msa0124260:three_prime_UTR
TGATGTCAAGGTAAGTTCCC+AGG 0.569517 1_3:-51942246 Msa0124260:CDS
ATTCATCAAAACACTCTCCT+GGG 0.571948 1_3:+51942229 None:intergenic
GACAGTCTCTTAGCGCACTC+AGG 0.573098 1_3:+51938440 None:intergenic
TCATATTCCTTCTGATGTCA+AGG 0.575470 1_3:-51942258 Msa0124260:CDS
GAACTTACCTTGACATCAGA+AGG 0.576119 1_3:+51942251 None:intergenic
AAGGGTTTGAAGATGAAAGG+AGG 0.579016 1_3:+51943334 None:intergenic
ACGCTGCGCGTAGATGTAAG+AGG 0.579089 1_3:+51938485 None:intergenic
GAGTTCACGATCCCCATACT+CGG 0.579548 1_3:+51938755 None:intergenic
CTTGAGCGATAATCGGGTGG+TGG 0.580545 1_3:-51941778 Msa0124260:CDS
CGAATATGGGCCGATAGATG+TGG 0.582159 1_3:-51942285 Msa0124260:CDS
CTGTAAGGATACACACGAAG+TGG 0.582972 1_3:+51938696 None:intergenic
ATACTGGTCATTATGAGGAA+GGG 0.584670 1_3:-51939804 Msa0124260:CDS
ATTGTGATGATGATTTGAGA+TGG 0.585528 1_3:-51941359 Msa0124260:CDS
CATGGCTTCAAGTTGAAAGA+GGG 0.586439 1_3:-51942756 Msa0124260:CDS
ACCAGAGTCGGCCAATGCAT+AGG 0.589399 1_3:+51939720 None:intergenic
ATTACAACAGAGTATACAGA+TGG 0.590218 1_3:+51938229 None:intergenic
CAGCAGTTGGCAGTTATGGT+AGG 0.590509 1_3:-51941732 Msa0124260:CDS
CCCCTGTCACTCGACTCGGA+TGG 0.590694 1_3:-51941404 Msa0124260:CDS
GATGCAGCCCTATACATGTA+GGG 0.591178 1_3:+51941291 None:intergenic
TGGTTGAAATATGAGAAGCA+GGG 0.596245 1_3:-51942350 Msa0124260:CDS
CCTGATGGGCTCGAGTATGG+TGG 0.596465 1_3:+51938886 None:intergenic
CGCGTTATAGAATGTTTGAG+GGG 0.597250 1_3:-51941104 Msa0124260:CDS
AAGCAACAAGCAGAGACTGT+TGG 0.598461 1_3:-51941601 Msa0124260:CDS
ATTATCAGAAGGACACCTCA+AGG 0.599241 1_3:+51939651 None:intergenic
ATGAGGACAGAGAATTCTCA+AGG 0.601625 1_3:-51941264 Msa0124260:CDS
TGGGATGTGTAAGACTCTTG+CGG 0.602911 1_3:-51941566 Msa0124260:CDS
TAGCTCGCAAACTTGACTCA+TGG 0.603131 1_3:+51938346 None:intergenic
AGCTCTAGATAGCTCAGCAA+TGG 0.603255 1_3:+51938531 None:intergenic
AAGAATACCAGATATATATG+TGG 0.606691 1_3:-51938116 Msa0124260:three_prime_UTR
GTTTCGTGCGATGTTAAATG+GGG 0.610029 1_3:-51942117 Msa0124260:CDS
ATAGGGCTGCATCTTTAATG+AGG 0.610370 1_3:-51941281 Msa0124260:CDS
AAAGACTTGTATATGAGGGG+TGG 0.612054 1_3:-51939837 Msa0124260:CDS
TCCATCCGAGTCGAGTGACA+GGG 0.612152 1_3:+51941403 None:intergenic
GAACACGCGCAAGACCCTGA+TGG 0.612717 1_3:+51938871 None:intergenic
TAATCAACCGGTTTAAAGAA+CGG 0.616970 1_3:+51942557 None:intergenic
GGGCACAATTATATGACTGT+TGG 0.617088 1_3:-51941011 Msa0124260:CDS
TATTGAACCAAGACCAGAGT+CGG 0.619309 1_3:+51939708 None:intergenic
CTCTCCGCCATGCTTCGCGG+AGG 0.620798 1_3:+51942408 None:intergenic
TGAGAAGAGATCCGAGTATG+GGG 0.621478 1_3:-51938766 Msa0124260:CDS
CACCATACTCGAGCCCATCA+GGG 0.625478 1_3:-51938885 Msa0124260:CDS
CTTGTAAACAAGAAGCTGCA+AGG 0.625964 1_3:+51941826 None:intergenic
CATGTAGGGATATACAAGAG+TGG 0.626406 1_3:+51941305 None:intergenic
TTTCTGGGAATCGTCGTCTG+AGG 0.626743 1_3:-51942093 Msa0124260:CDS
TACACAAATATGTTTAGATG+CGG 0.628601 1_3:+51938060 None:intergenic
CAGCGTTCCATGAACACAAG+GGG 0.629074 1_3:-51938468 Msa0124260:CDS
CAGAAAGAAAGAAATGAGAA+GGG 0.629586 1_3:+51943316 None:intergenic
TATTCTTAACACATCTCCAA+AGG 0.630781 1_3:+51938132 None:intergenic
CACAAAGGCAGATCTTGAGA+TGG 0.631605 1_3:-51938733 Msa0124260:CDS
CATGAAAGACTTGTATATGA+GGG 0.634711 1_3:-51939841 Msa0124260:CDS
AATGACCAAACTTATCGAGA+AGG 0.635600 1_3:-51938811 Msa0124260:CDS
TCAGATGCTTGAATCTGATG+CGG 0.636780 1_3:-51940950 Msa0124260:CDS
GGTTGAAATATGAGAAGCAG+GGG 0.637522 1_3:-51942349 Msa0124260:CDS
CTGCTTGAGCGATAATCGGG+TGG 0.640329 1_3:-51941781 Msa0124260:CDS
CCCTCAAACATTCTATAACG+CGG 0.643662 1_3:+51941105 None:intergenic
GGTTTAAAGAACGGTAACAC+AGG 0.645027 1_3:+51942566 None:intergenic
CCTTTGCGCAGATTATCAGA+AGG 0.649315 1_3:+51939640 None:intergenic
CTTATCGCTCTTATACCCGA+AGG 0.652004 1_3:+51942041 None:intergenic
ATTTAGGCTAAACTGTCCTG+AGG 0.653337 1_3:-51939911 Msa0124260:intron
ACCAACAACAGAAAGATAGT+GGG 0.654790 1_3:-51943434 Msa0124260:five_prime_UTR
CCTTCTGATAATCTGCGCAA+AGG 0.655235 1_3:-51939640 Msa0124260:CDS
AACCAGTAACAGAATAAACA+TGG 0.659934 1_3:+51941493 None:intergenic
ATTGATGCAGAAGAGGATTG+TGG 0.661016 1_3:+51942715 None:intergenic
AATCGCTTGAACATCACGAA+GGG 0.661375 1_3:+51941140 None:intergenic
CTGTCGTGCTGCACTCTCGG+TGG 0.669685 1_3:-51938422 Msa0124260:CDS
GAAGCCTCCGCGAAGCATGG+CGG 0.670703 1_3:-51942412 Msa0124260:CDS
ATGAAAGACTTGTATATGAG+GGG 0.671236 1_3:-51939840 Msa0124260:CDS
CATGCTCAAGCACAAGAGTG+CGG 0.678233 1_3:+51941061 None:intergenic
TGGGGATCGTGAACTCACAA+AGG 0.679605 1_3:-51938748 Msa0124260:CDS
GCAGCGTTCCATGAACACAA+GGG 0.680635 1_3:-51938469 Msa0124260:CDS
CCATCCGAGTCGAGTGACAG+GGG 0.681722 1_3:+51941404 None:intergenic
GCATCAGTTTAACATCACCA+AGG 0.683805 1_3:+51942438 None:intergenic
TTAAAGAACGGTAACACAGG+TGG 0.686583 1_3:+51942569 None:intergenic
CGATTATCGCTCAAGCAGTG+AGG 0.692445 1_3:+51941786 None:intergenic
GAATCGCTTGAACATCACGA+AGG 0.693374 1_3:+51941139 None:intergenic
GCATGTTGAACATTTGACGA+CGG 0.694893 1_3:-51941043 Msa0124260:CDS
TGTAGGGATATACAAGAGTG+GGG 0.708232 1_3:+51941307 None:intergenic
AGCGTTCCATGAACACAAGG+GGG 0.730043 1_3:-51938467 Msa0124260:CDS
ACTGTCCTGAGGCAGCTATG+CGG 0.731322 1_3:-51939900 Msa0124260:CDS
GTTGAAATATGAGAAGCAGG+GGG 0.744146 1_3:-51942348 Msa0124260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAAAAAAAACTATTTTT+AGG + chr1_3:51941173-51941192 None:intergenic 10.0%
!! GAATATAAATTACAAAATTT+GGG + chr1_3:51943333-51943352 None:intergenic 10.0%
!! AGAATATAAATTACAAAATT+TGG + chr1_3:51943334-51943353 None:intergenic 10.0%
!!! TTTTTATTTTTTTACTTCTG+TGG - chr1_3:51938381-51938400 Msa0124260:CDS 15.0%
!!! AACAAAACTTTTTATCATTT+TGG + chr1_3:51938481-51938500 None:intergenic 15.0%
!!! TTAGATTATTTTTAAGTTTG+AGG - chr1_3:51938515-51938534 Msa0124260:CDS 15.0%
!!! CAATATGTTGTTTTTATAAT+TGG - chr1_3:51939301-51939320 Msa0124260:intron 15.0%
!!! ACTTTAATTTAGGAAAAATA+GGG + chr1_3:51940815-51940834 None:intergenic 15.0%
!!! AACTTTAATTTAGGAAAAAT+AGG + chr1_3:51940816-51940835 None:intergenic 15.0%
!!! TGTAAAAAGAAATGATTTTA+CGG - chr1_3:51941968-51941987 Msa0124260:CDS 15.0%
!!! ATTGTTTTTGTTTTCTCATA+GGG - chr1_3:51938441-51938460 Msa0124260:CDS 20.0%
!!! AAAGTTTTGTTTTTTCTTTC+TGG - chr1_3:51938490-51938509 Msa0124260:CDS 20.0%
!!! AAGTTTTGTTTTTTCTTTCT+GGG - chr1_3:51938491-51938510 Msa0124260:CDS 20.0%
!!! AAGGTTTGATTTTGAATAAT+AGG - chr1_3:51938604-51938623 Msa0124260:intron 20.0%
!!! AGGTTTGATTTTGAATAATA+GGG - chr1_3:51938605-51938624 Msa0124260:intron 20.0%
!!! TTTCAATATCAGGTTTTTAA+AGG - chr1_3:51939031-51939050 Msa0124260:intron 20.0%
!! CCTACTATATGATTAAATAT+AGG + chr1_3:51940728-51940747 None:intergenic 20.0%
!! CCTATATTTAATCATATAGT+AGG - chr1_3:51940725-51940744 Msa0124260:intron 20.0%
!! AAGGCTGATAAATAAAAATA+AGG - chr1_3:51940769-51940788 Msa0124260:intron 20.0%
!!! TTTAATTTAGGAAAAATAGG+GGG + chr1_3:51940813-51940832 None:intergenic 20.0%
!!! CTTTAATTTAGGAAAAATAG+GGG + chr1_3:51940814-51940833 None:intergenic 20.0%
!!! AAACTCAATTTTAAAATGGA+GGG + chr1_3:51940844-51940863 None:intergenic 20.0%
!!! AAAACTCAATTTTAAAATGG+AGG + chr1_3:51940845-51940864 None:intergenic 20.0%
!!! TCCATTTTAAAATTGAGTTT+TGG - chr1_3:51940844-51940863 Msa0124260:intron 20.0%
!!! CCATTTTAAAATTGAGTTTT+GGG - chr1_3:51940845-51940864 Msa0124260:intron 20.0%
!! AGCAAAAATGACTAAAAATT+TGG - chr1_3:51941032-51941051 Msa0124260:CDS 20.0%
!! AAAAATGACTAAAAATTTGG+CGG - chr1_3:51941035-51941054 Msa0124260:CDS 20.0%
!!! ACTTTAATTTAAGCCAAATA+TGG - chr1_3:51941127-51941146 Msa0124260:CDS 20.0%
!!! CTTTAATTTAAGCCAAATAT+GGG - chr1_3:51941128-51941147 Msa0124260:CDS 20.0%
!!! TTTAATTTAAGCCAAATATG+GGG - chr1_3:51941129-51941148 Msa0124260:CDS 20.0%
!! ATCTGACATTTATATGATTT+AGG - chr1_3:51941565-51941584 Msa0124260:CDS 20.0%
!!! AGAACTATTTTCATTAGTTT+TGG + chr1_3:51942214-51942233 None:intergenic 20.0%
!! AAATATAACCAACTATACAA+AGG + chr1_3:51942407-51942426 None:intergenic 20.0%
!! GTTAATACTTATTGTATCAA+AGG + chr1_3:51942462-51942481 None:intergenic 20.0%
!!! AAGTATTAACTTAAGAGTTT+TGG - chr1_3:51942472-51942491 Msa0124260:CDS 20.0%
!!! TCATTTTCTAAAAAATGACA+AGG - chr1_3:51942642-51942661 Msa0124260:intron 20.0%
!! TACTTGACAATATGTATATA+TGG - chr1_3:51942893-51942912 Msa0124260:five_prime_UTR 20.0%
!!! ATTGAACTTTGTTTTCTGTT+TGG + chr1_3:51938124-51938143 None:intergenic 25.0%
!!! GTTTTGTTTAGCATCAAATA+AGG + chr1_3:51938277-51938296 None:intergenic 25.0%
!!! GATTGTTTTTGTTTTCTCAT+AGG - chr1_3:51938440-51938459 Msa0124260:CDS 25.0%
!!! TATTTTTAAGTTTGAGGTTG+AGG - chr1_3:51938521-51938540 Msa0124260:CDS 25.0%
!!! ATTTTTAAGTTTGAGGTTGA+GGG - chr1_3:51938522-51938541 Msa0124260:CDS 25.0%
! AATCAAACCTTTACAAATCA+GGG + chr1_3:51938595-51938614 None:intergenic 25.0%
! AAATCAAACCTTTACAAATC+AGG + chr1_3:51938596-51938615 None:intergenic 25.0%
! TTATAGTGAATCTCTAATCA+AGG - chr1_3:51938892-51938911 Msa0124260:CDS 25.0%
! TGAAAACAATATATCTCCTT+CGG - chr1_3:51939435-51939454 Msa0124260:intron 25.0%
!! ATAAGTTATTTCAGTATGAC+TGG - chr1_3:51939469-51939488 Msa0124260:intron 25.0%
!! AATATCTCCAACAAAAGTTT+TGG + chr1_3:51939517-51939536 None:intergenic 25.0%
! TTGTTGTGATAGATTAAAAG+AGG - chr1_3:51939555-51939574 Msa0124260:intron 25.0%
!! AGGGACTAAAACTTTAATTT+AGG + chr1_3:51940825-51940844 None:intergenic 25.0%
!!! CCCAAAACTCAATTTTAAAA+TGG + chr1_3:51940848-51940867 None:intergenic 25.0%
!! CAAAGGAAAATTTTATGATG+TGG + chr1_3:51941430-51941449 None:intergenic 25.0%
! AAGAGTCTATTTGCATTAAA+AGG - chr1_3:51941724-51941743 Msa0124260:CDS 25.0%
! ATTAGAGAAATATTTCCAGA+AGG + chr1_3:51941905-51941924 None:intergenic 25.0%
! GGAAATTTATTAGCAGTTAT+TGG - chr1_3:51941989-51942008 Msa0124260:CDS 25.0%
! ATGTTATCTTACCACAAAAT+TGG + chr1_3:51942055-51942074 None:intergenic 25.0%
!!! TTAACTTGCTAATAAGAAGA+TGG - chr1_3:51942124-51942143 Msa0124260:CDS 25.0%
!!! TAACTTGCTAATAAGAAGAT+GGG - chr1_3:51942125-51942144 Msa0124260:CDS 25.0%
! ACAAAGGCTAACAAATTTAT+TGG + chr1_3:51942391-51942410 None:intergenic 25.0%
!! TTTGTTCCATTTAATTTACC+AGG - chr1_3:51942501-51942520 Msa0124260:CDS 25.0%
! TAGAAAGGAAAATGATATCA+TGG + chr1_3:51943298-51943317 None:intergenic 25.0%
!! TTTATATTCTTGCTATCCTT+TGG - chr1_3:51943344-51943363 Msa0124260:five_prime_UTR 25.0%
! AAGAATACCAGATATATATG+TGG - chr1_3:51943376-51943395 Msa0124260:five_prime_UTR 25.0%
! TACACAAATATGTTTAGATG+CGG + chr1_3:51943435-51943454 None:intergenic 25.0%
!! TTGTTTTCTGTTTGGTGAAA+GGG + chr1_3:51938116-51938135 None:intergenic 30.0%
!! TTTGTTTTCTGTTTGGTGAA+AGG + chr1_3:51938117-51938136 None:intergenic 30.0%
CAGAAAGAAAGAAATGAGAA+GGG + chr1_3:51938179-51938198 None:intergenic 30.0%
AATAAGGAATATGCAGGAAA+GGG + chr1_3:51938261-51938280 None:intergenic 30.0%
AAATAAGGAATATGCAGGAA+AGG + chr1_3:51938262-51938281 None:intergenic 30.0%
!!! TTTTTGTTTTCTCATAGGGT+AGG - chr1_3:51938445-51938464 Msa0124260:CDS 30.0%
! TAATCAACCGGTTTAAAGAA+CGG + chr1_3:51938938-51938957 None:intergenic 30.0%
AAAACTTCGACATAATCAAC+CGG + chr1_3:51938950-51938969 None:intergenic 30.0%
!! TCTGTTTCTGTTTCAATATC+AGG - chr1_3:51939021-51939040 Msa0124260:intron 30.0%
TTCACGAGATGATTGTATTT+GGG - chr1_3:51939116-51939135 Msa0124260:intron 30.0%
GTAAACGTCAAAACGAATAT+GGG - chr1_3:51939194-51939213 Msa0124260:intron 30.0%
! TTTTTATAATTGGCGATGAG+AGG - chr1_3:51939311-51939330 Msa0124260:intron 30.0%
GAAAACAATATATCTCCTTC+GGG - chr1_3:51939436-51939455 Msa0124260:intron 30.0%
TCTATCACAACAATACTTGT+TGG + chr1_3:51939548-51939567 None:intergenic 30.0%
! ATCTTCTTTGGAAGTAACTA+AGG + chr1_3:51939602-51939621 None:intergenic 30.0%
AACCAGTAACAGAATAAACA+TGG + chr1_3:51940002-51940021 None:intergenic 30.0%
CACAATATAGTGATCTTTCT+TGG + chr1_3:51940119-51940138 None:intergenic 30.0%
! ATTGTGATGATGATTTGAGA+TGG - chr1_3:51940133-51940152 Msa0124260:intron 30.0%
TTGTATATCCCTACATGTAT+AGG - chr1_3:51940193-51940212 Msa0124260:intron 30.0%
TGTATATCCCTACATGTATA+GGG - chr1_3:51940194-51940213 Msa0124260:intron 30.0%
TAAACTTTCGTTAGAATGCT+TGG - chr1_3:51940284-51940303 Msa0124260:intron 30.0%
!!! ACTGCGGTTTTTTATATATC+TGG - chr1_3:51940308-51940327 Msa0124260:intron 30.0%
!!! TTTTATATATCTGGCTCTTG+AGG - chr1_3:51940317-51940336 Msa0124260:intron 30.0%
! TCACTCTGTTTCACAATTTT+CGG + chr1_3:51941073-51941092 None:intergenic 30.0%
!!! TATTTCTAAAACCGGGTTTT+TGG + chr1_3:51941096-51941115 None:intergenic 30.0%
!!! AAAAACCCGGTTTTAGAAAT+AGG - chr1_3:51941095-51941114 Msa0124260:CDS 30.0%
!!! AAAACCCGGTTTTAGAAATA+GGG - chr1_3:51941096-51941115 Msa0124260:CDS 30.0%
! ATTGAAACTTTTGTATGCCA+TGG - chr1_3:51941533-51941552 Msa0124260:CDS 30.0%
CATGAAAGACTTGTATATGA+GGG - chr1_3:51941651-51941670 Msa0124260:CDS 30.0%
ATGAAAGACTTGTATATGAG+GGG - chr1_3:51941652-51941671 Msa0124260:CDS 30.0%
! AAATAGACTCTTCAGCTTTT+TGG + chr1_3:51941716-51941735 None:intergenic 30.0%
! TTGCATTAAAAGGTCTTTTG+AGG - chr1_3:51941734-51941753 Msa0124260:CDS 30.0%
!!! TTTTGAGGCATTTTTCCTAA+AGG - chr1_3:51941749-51941768 Msa0124260:CDS 30.0%
! CTCGACATTTTCATTGTTTT+CGG - chr1_3:51942232-51942251 Msa0124260:CDS 30.0%
!!! GCTAGTTTTACTTGTTAACA+AGG + chr1_3:51942297-51942316 None:intergenic 30.0%
!! TTTGTTAGCCTTTGTATAGT+TGG - chr1_3:51942396-51942415 Msa0124260:CDS 30.0%
! TTTTGTTGATCATGGAAAAC+TGG - chr1_3:51942546-51942565 Msa0124260:CDS 30.0%
! AAGGGCTTTAATATAGCAAT+CGG + chr1_3:51942581-51942600 None:intergenic 30.0%
TATGAAGTTCCAACATTTCT+TGG + chr1_3:51943106-51943125 None:intergenic 30.0%
ATTACAACAGAGTATACAGA+TGG + chr1_3:51943266-51943285 None:intergenic 30.0%
!! TCATTTTCCTTTCTAAAGAG+AGG - chr1_3:51943303-51943322 Msa0124260:five_prime_UTR 30.0%
TATTCTTAACACATCTCCAA+AGG + chr1_3:51943363-51943382 None:intergenic 30.0%
AAATACATGTATGGTTGTTG+AGG + chr1_3:51943407-51943426 None:intergenic 30.0%
GCGGTAATAAAATACATGTA+TGG + chr1_3:51943416-51943435 None:intergenic 30.0%
TGTCTTATCTTGAAAAGAAG+AGG + chr1_3:51943460-51943479 None:intergenic 30.0%
ACCAACAACAGAAAGATAGT+GGG - chr1_3:51938058-51938077 Msa0124260:three_prime_UTR 35.0%
GCAGAAAGAAAGAAATGAGA+AGG + chr1_3:51938180-51938199 None:intergenic 35.0%
! TCAAATGGGTACGAAAGTTT+TGG + chr1_3:51938238-51938257 None:intergenic 35.0%
GCATCAAATAAGGAATATGC+AGG + chr1_3:51938267-51938286 None:intergenic 35.0%
! AATAGTGGAATGTGACTAGT+AGG - chr1_3:51938546-51938565 Msa0124260:CDS 35.0%
! TCTTTGACCCTGATTTGTAA+AGG - chr1_3:51938585-51938604 Msa0124260:intron 35.0%
! GAATAATAGGGTTGTTGTTG+TGG - chr1_3:51938617-51938636 Msa0124260:intron 35.0%
CATTGAAGAAAGTCCTCATA+GGG + chr1_3:51938671-51938690 None:intergenic 35.0%
AGAACTTAAGTGCTCTTCTT+TGG + chr1_3:51938703-51938722 None:intergenic 35.0%
GTTCTCTTAATCCACAATCA+TGG - chr1_3:51938718-51938737 Msa0124260:CDS 35.0%
ATCTTACATTGATGCAGAAG+AGG + chr1_3:51938787-51938806 None:intergenic 35.0%
TGTGTTACCGTTCTTTAAAC+CGG - chr1_3:51938928-51938947 Msa0124260:CDS 35.0%
AACATGACTCAAGTTCTTCA+TGG + chr1_3:51938982-51939001 None:intergenic 35.0%
!! TATCAGGTTTTTAAAGGCCT+TGG - chr1_3:51939037-51939056 Msa0124260:intron 35.0%
GTTCACGAGATGATTGTATT+TGG - chr1_3:51939115-51939134 Msa0124260:intron 35.0%
TCACGAGATGATTGTATTTG+GGG - chr1_3:51939117-51939136 Msa0124260:intron 35.0%
ATGGTTGAAATATGAGAAGC+AGG - chr1_3:51939141-51939160 Msa0124260:intron 35.0%
TGGTTGAAATATGAGAAGCA+GGG - chr1_3:51939142-51939161 Msa0124260:intron 35.0%
GGTAAACGTCAAAACGAATA+TGG - chr1_3:51939193-51939212 Msa0124260:intron 35.0%
ATATGAGACTCCACATCTAT+CGG + chr1_3:51939220-51939239 None:intergenic 35.0%
TCATATTCCTTCTGATGTCA+AGG - chr1_3:51939234-51939253 Msa0124260:intron 35.0%
ATTCATCAAAACACTCTCCT+GGG + chr1_3:51939266-51939285 None:intergenic 35.0%
!!! AGGAGAGTGTTTTGATGAAT+GGG - chr1_3:51939266-51939285 Msa0124260:intron 35.0%
GATGTTAAATGGGGATTTCT+GGG - chr1_3:51939384-51939403 Msa0124260:intron 35.0%
! AGTCTCTCCAAAACTTTTGT+TGG - chr1_3:51939507-51939526 Msa0124260:intron 35.0%
TTGTGTCTGAACTAGAGTTA+AGG + chr1_3:51939834-51939853 None:intergenic 35.0%
!! TTTGAGAGCGCTGTAAATAA+TGG - chr1_3:51939976-51939995 Msa0124260:intron 35.0%
TGACTCTATAAAAGGTGAGA+AGG - chr1_3:51940032-51940051 Msa0124260:intron 35.0%
ATGTAGGGATATACAAGAGT+GGG + chr1_3:51940189-51940208 None:intergenic 35.0%
GCTGAAATTAATCGGATACT+TGG - chr1_3:51940258-51940277 Msa0124260:intron 35.0%
ATAAGGCTTAGATGCATTTC+TGG - chr1_3:51940786-51940805 Msa0124260:intron 35.0%
ATCCTGAAAGTTGTGAAACA+GGG + chr1_3:51940874-51940893 None:intergenic 35.0%
AATCCTGAAAGTTGTGAAAC+AGG + chr1_3:51940875-51940894 None:intergenic 35.0%
ATTGCCACATCAAAATAGAC+GGG + chr1_3:51940971-51940990 None:intergenic 35.0%
CATTGCCACATCAAAATAGA+CGG + chr1_3:51940972-51940991 None:intergenic 35.0%
AATGACTAAAAATTTGGCGG+TGG - chr1_3:51941038-51941057 Msa0124260:CDS 35.0%
! CACTCTGTTTCACAATTTTC+GGG + chr1_3:51941072-51941091 None:intergenic 35.0%
!!! AAACCCGGTTTTAGAAATAG+GGG - chr1_3:51941097-51941116 Msa0124260:CDS 35.0%
GAATTCTACACGTACATAAC+AGG + chr1_3:51941201-51941220 None:intergenic 35.0%
CACTCTTCAAACTTAAGTGT+CGG + chr1_3:51941251-51941270 None:intergenic 35.0%
TTGAATGTAGCCACATGTAT+TGG + chr1_3:51941292-51941311 None:intergenic 35.0%
TACTTACACAGACACAAACA+CGG + chr1_3:51941366-51941385 None:intergenic 35.0%
TCTCTATCAAAACAACCACA+AGG - chr1_3:51941395-51941414 Msa0124260:CDS 35.0%
! ATGTGGATTTTTACTCCTTG+TGG + chr1_3:51941413-51941432 None:intergenic 35.0%
TGTCAGATTCATTTACTCCA+TGG + chr1_3:51941553-51941572 None:intergenic 35.0%
GCATGAAAGACTTGTATATG+AGG - chr1_3:51941650-51941669 Msa0124260:CDS 35.0%
GTATGATACTGGTCATTATG+AGG - chr1_3:51941683-51941702 Msa0124260:CDS 35.0%
ATACTGGTCATTATGAGGAA+GGG - chr1_3:51941688-51941707 Msa0124260:CDS 35.0%
! TTTTCTATTGTACCACCTTC+TGG - chr1_3:51941887-51941906 Msa0124260:CDS 35.0%
AGAGAAATATTTCCAGAAGG+TGG + chr1_3:51941902-51941921 None:intergenic 35.0%
! TTGTAGAAGTTCTGATGTGT+AGG - chr1_3:51942017-51942036 Msa0124260:CDS 35.0%
! TCTAGGTAACACCAATTTTG+TGG - chr1_3:51942041-51942060 Msa0124260:CDS 35.0%
TTTGTGGTAAGATAACATGC+AGG - chr1_3:51942057-51942076 Msa0124260:CDS 35.0%
TTGTGGTAAGATAACATGCA+GGG - chr1_3:51942058-51942077 Msa0124260:CDS 35.0%
! ATGTTTTCACAAAGCAAACG+AGG - chr1_3:51942344-51942363 Msa0124260:CDS 35.0%
GGTATTAATACATTCTGCCA+AGG + chr1_3:51942370-51942389 None:intergenic 35.0%
TGTAGCATCACATCATTTCT+AGG - chr1_3:51942426-51942445 Msa0124260:CDS 35.0%
AACACTTCCAAGATTGTTCA+GGG + chr1_3:51942527-51942546 None:intergenic 35.0%
AAACACTTCCAAGATTGTTC+AGG + chr1_3:51942528-51942547 None:intergenic 35.0%
!!! GGAAGTGTTTTTGTTGATCA+TGG - chr1_3:51942538-51942557 Msa0124260:CDS 35.0%
!!! TCGAGTATGGTGGATTTTAA+GGG + chr1_3:51942599-51942618 None:intergenic 35.0%
AATGACCAAACTTATCGAGA+AGG - chr1_3:51942681-51942700 Msa0124260:intron 35.0%
! TTTTGCCTTCTCGATAAGTT+TGG + chr1_3:51942689-51942708 None:intergenic 35.0%
!!! CAGCAGGTTGATATTTTTAC+TGG - chr1_3:51942827-51942846 Msa0124260:exon 35.0%
!! GGTTGATATTTTTACTGGAG+TGG - chr1_3:51942832-51942851 Msa0124260:exon 35.0%
!! GAATGTGATTGCAGTTTTGA+TGG - chr1_3:51942917-51942936 Msa0124260:five_prime_UTR 35.0%
!! AGTTTTGATGGACAACCATA+AGG - chr1_3:51942929-51942948 Msa0124260:five_prime_UTR 35.0%
GGATAAGCCACATATATATC+TGG + chr1_3:51943386-51943405 None:intergenic 35.0%
AATAGTGGCTGCAACTTCTA+TGG - chr1_3:51938025-51938044 Msa0124260:three_prime_UTR 40.0%
TCTTTCTGTTGTTGGTGTGT+TGG + chr1_3:51938054-51938073 None:intergenic 40.0%
CACCAACAACAGAAAGATAG+TGG - chr1_3:51938057-51938076 Msa0124260:three_prime_UTR 40.0%
TCCCACTATCTTTCTGTTGT+TGG + chr1_3:51938062-51938081 None:intergenic 40.0%
AAGGGTTTGAAGATGAAAGG+AGG + chr1_3:51938161-51938180 None:intergenic 40.0%
GAGAAGGGTTTGAAGATGAA+AGG + chr1_3:51938164-51938183 None:intergenic 40.0%
TATGCAGGAAAGGGTCAAAT+GGG + chr1_3:51938252-51938271 None:intergenic 40.0%
ATATGCAGGAAAGGGTCAAA+TGG + chr1_3:51938253-51938272 None:intergenic 40.0%
! TTTGAGGTTGAGGGTAATAG+TGG - chr1_3:51938531-51938550 Msa0124260:CDS 40.0%
TTCGTGTATTATGCCCTATG+AGG - chr1_3:51938655-51938674 Msa0124260:intron 40.0%
CCATTGAAGAAAGTCCTCAT+AGG + chr1_3:51938672-51938691 None:intergenic 40.0%
CCTATGAGGACTTTCTTCAA+TGG - chr1_3:51938669-51938688 Msa0124260:intron 40.0%
TCAACTTGAAGCCATGATTG+TGG + chr1_3:51938732-51938751 None:intergenic 40.0%
!! TCATGGCTTCAAGTTGAAAG+AGG - chr1_3:51938735-51938754 Msa0124260:CDS 40.0%
!! CATGGCTTCAAGTTGAAAGA+GGG - chr1_3:51938736-51938755 Msa0124260:CDS 40.0%
GAGGATTGTGGTGACAATTT+GGG + chr1_3:51938768-51938787 None:intergenic 40.0%
AGAGGATTGTGGTGACAATT+TGG + chr1_3:51938769-51938788 None:intergenic 40.0%
ATTGATGCAGAAGAGGATTG+TGG + chr1_3:51938780-51938799 None:intergenic 40.0%
TTAAAGAACGGTAACACAGG+TGG + chr1_3:51938926-51938945 None:intergenic 40.0%
GGTTTAAAGAACGGTAACAC+AGG + chr1_3:51938929-51938948 None:intergenic 40.0%
ACTTGAGTCATGTTCTTCAC+AGG - chr1_3:51938988-51939007 Msa0124260:intron 40.0%
GCATCAGTTTAACATCACCA+AGG + chr1_3:51939057-51939076 None:intergenic 40.0%
! AGATGATTGTATTTGGGGCA+TGG - chr1_3:51939122-51939141 Msa0124260:intron 40.0%
GGTTGAAATATGAGAAGCAG+GGG - chr1_3:51939143-51939162 Msa0124260:intron 40.0%
GTTGAAATATGAGAAGCAGG+GGG - chr1_3:51939144-51939163 Msa0124260:intron 40.0%
GAACTTACCTTGACATCAGA+AGG + chr1_3:51939244-51939263 None:intergenic 40.0%
CATTCATCAAAACACTCTCC+TGG + chr1_3:51939267-51939286 None:intergenic 40.0%
!!! CAGGAGAGTGTTTTGATGAA+TGG - chr1_3:51939265-51939284 Msa0124260:intron 40.0%
CCATTTAACATCGCACGAAA+CGG + chr1_3:51939376-51939395 None:intergenic 40.0%
CGTTTCGTGCGATGTTAAAT+GGG - chr1_3:51939374-51939393 Msa0124260:intron 40.0%
GTTTCGTGCGATGTTAAATG+GGG - chr1_3:51939375-51939394 Msa0124260:intron 40.0%
CGATGTTAAATGGGGATTTC+TGG - chr1_3:51939383-51939402 Msa0124260:intron 40.0%
GAGTTCGATAGCATCTTCTT+TGG + chr1_3:51939614-51939633 None:intergenic 40.0%
AGAAGATGCTATCGAACTCA+TGG - chr1_3:51939615-51939634 Msa0124260:intron 40.0%
CTTGTAAACAAGAAGCTGCA+AGG + chr1_3:51939669-51939688 None:intergenic 40.0%
AGTGAGGAAGATCACGTAAA+AGG + chr1_3:51939693-51939712 None:intergenic 40.0%
TCATGCTAATAAGCAGCAGT+TGG - chr1_3:51939747-51939766 Msa0124260:CDS 40.0%
! AGACACAACAGCTCATTTTC+TGG - chr1_3:51939846-51939865 Msa0124260:CDS 40.0%
!! CAACAGCTCATTTTCTGGAA+AGG - chr1_3:51939851-51939870 Msa0124260:CDS 40.0%
TACACATCCCAAACGATGAA+AGG + chr1_3:51939917-51939936 None:intergenic 40.0%
GGCCATGTTTATTCTGTTAC+TGG - chr1_3:51939997-51940016 Msa0124260:intron 40.0%
! GCTCGACTTGACTCTATAAA+AGG - chr1_3:51940024-51940043 Msa0124260:intron 40.0%
! CAAGTTCAGTTGCTTTCTCA+AGG + chr1_3:51940164-51940183 None:intergenic 40.0%
TGTAGGGATATACAAGAGTG+GGG + chr1_3:51940188-51940207 None:intergenic 40.0%
CATGTAGGGATATACAAGAG+TGG + chr1_3:51940190-51940209 None:intergenic 40.0%
ATAGGGCTGCATCTTTAATG+AGG - chr1_3:51940211-51940230 Msa0124260:intron 40.0%
ATGAGGACAGAGAATTCTCA+AGG - chr1_3:51940228-51940247 Msa0124260:intron 40.0%
!! GTGCACTGGCTGAAATTAAT+CGG - chr1_3:51940250-51940269 Msa0124260:intron 40.0%
AATCGCTTGAACATCACGAA+GGG + chr1_3:51940355-51940374 None:intergenic 40.0%
TCCGCGTTATAGAATGTTTG+AGG - chr1_3:51940386-51940405 Msa0124260:intron 40.0%
CCCTCAAACATTCTATAACG+CGG + chr1_3:51940390-51940409 None:intergenic 40.0%
CCGCGTTATAGAATGTTTGA+GGG - chr1_3:51940387-51940406 Msa0124260:intron 40.0%
CGCGTTATAGAATGTTTGAG+GGG - chr1_3:51940388-51940407 Msa0124260:intron 40.0%
GCATGTTGAACATTTGACGA+CGG - chr1_3:51940449-51940468 Msa0124260:intron 40.0%
GGGCACAATTATATGACTGT+TGG - chr1_3:51940481-51940500 Msa0124260:intron 40.0%
TCAGATGCTTGAATCTGATG+CGG - chr1_3:51940542-51940561 Msa0124260:intron 40.0%
ATTCACTCACATCATACCTG+AGG + chr1_3:51940605-51940624 None:intergenic 40.0%
TAACTCCACTGTTGAACCTT+AGG - chr1_3:51940669-51940688 Msa0124260:intron 40.0%
AACTCCACTGTTGAACCTTA+GGG - chr1_3:51940670-51940689 Msa0124260:intron 40.0%
TATTCCCTAAGGTTCAACAG+TGG + chr1_3:51940677-51940696 None:intergenic 40.0%
ACTGTTGAACCTTAGGGAAT+AGG - chr1_3:51940676-51940695 Msa0124260:intron 40.0%
TCAGAACATCCTATTCCCTA+AGG + chr1_3:51940688-51940707 None:intergenic 40.0%
AGGGAATAGGATGTTCTGAT+TGG - chr1_3:51940689-51940708 Msa0124260:intron 40.0%
TCGCAAGTTCATGACTAAGA+AGG - chr1_3:51940750-51940769 Msa0124260:intron 40.0%
AGCGAAAGAACTCCAACATT+GGG + chr1_3:51940910-51940929 None:intergenic 40.0%
TGGCATTGTCATTAATGACG+TGG - chr1_3:51940934-51940953 Msa0124260:CDS 40.0%
!!! CGTCTATTTTGATGTGGCAA+TGG - chr1_3:51940970-51940989 Msa0124260:CDS 40.0%
TTGCTGATGTGACAATGAAG+TGG + chr1_3:51941017-51941036 None:intergenic 40.0%
AAACAGAGTGACCAAAAACC+CGG - chr1_3:51941082-51941101 Msa0124260:CDS 40.0%
!!! AACCCGGTTTTAGAAATAGG+GGG - chr1_3:51941098-51941117 Msa0124260:CDS 40.0%
!! AGTCCCCCTATTTCTAAAAC+CGG + chr1_3:51941104-51941123 None:intergenic 40.0%
! GCACTTTTGATCCCCATATT+TGG + chr1_3:51941143-51941162 None:intergenic 40.0%
TACACGTACATAACAGGAAG+AGG + chr1_3:51941195-51941214 None:intergenic 40.0%
GTTTCAGACACCAATACATG+TGG - chr1_3:51941279-51941298 Msa0124260:CDS 40.0%
ACGTAAAGCTTGGATCTCAA+AGG + chr1_3:51941447-51941466 None:intergenic 40.0%
AATGCATATTCTCCTGCTTG+AGG - chr1_3:51941484-51941503 Msa0124260:CDS 40.0%
ATGAAAGAAGATCCTCAAGC+AGG + chr1_3:51941499-51941518 None:intergenic 40.0%
ATTTAGGCTAAACTGTCCTG+AGG - chr1_3:51941581-51941600 Msa0124260:CDS 40.0%
AAAGACTTGTATATGAGGGG+TGG - chr1_3:51941655-51941674 Msa0124260:CDS 40.0%
!! GGGTGGATTTTGTATGATAC+TGG - chr1_3:51941672-51941691 Msa0124260:CDS 40.0%
GATACTGGTCATTATGAGGA+AGG - chr1_3:51941687-51941706 Msa0124260:CDS 40.0%
TTTCCTAAAGGCCTATGCAT+TGG - chr1_3:51941761-51941780 Msa0124260:CDS 40.0%
TATTGAACCAAGACCAGAGT+CGG + chr1_3:51941787-51941806 None:intergenic 40.0%
ATTATCAGAAGGACACCTCA+AGG + chr1_3:51941844-51941863 None:intergenic 40.0%
AACAATCAGTTACCACACAC+AGG - chr1_3:51941926-51941945 Msa0124260:CDS 40.0%
GTTTGTACTTAACCTGTGTG+TGG + chr1_3:51941941-51941960 None:intergenic 40.0%
TGTGGTAAGATAACATGCAG+GGG - chr1_3:51942059-51942078 Msa0124260:CDS 40.0%
! AGATAACATGCAGGGGTATA+AGG - chr1_3:51942066-51942085 Msa0124260:CDS 40.0%
TACGAAGTCAGTCAATGTGA+TGG - chr1_3:51942153-51942172 Msa0124260:CDS 40.0%
TCAGGGCCTGGTAAATTAAA+TGG + chr1_3:51942510-51942529 None:intergenic 40.0%
TAATATAGCAATCGGCTGCT+TGG + chr1_3:51942573-51942592 None:intergenic 40.0%
!!! CTCGAGTATGGTGGATTTTA+AGG + chr1_3:51942600-51942619 None:intergenic 40.0%
GAAGGCAAAAAACAATGCGT+CGG - chr1_3:51942699-51942718 Msa0124260:intron 40.0%
TATGAGAAGAGATCCGAGTA+TGG - chr1_3:51942724-51942743 Msa0124260:CDS 40.0%
ATGAGAAGAGATCCGAGTAT+GGG - chr1_3:51942725-51942744 Msa0124260:CDS 40.0%
! CCAACATTTCTTGGTGGTTT+GGG + chr1_3:51943097-51943116 None:intergenic 40.0%
! TCCAACATTTCTTGGTGGTT+TGG + chr1_3:51943098-51943117 None:intergenic 40.0%
GAAGTTCCAACATTTCTTGG+TGG + chr1_3:51943103-51943122 None:intergenic 40.0%
GCTGATGATTGTACAAATGC+TGG + chr1_3:51943187-51943206 None:intergenic 40.0%
!!! TGGGTACGAAAGTTTTGGCT+AGG + chr1_3:51938233-51938252 None:intergenic 45.0%
! GGTTGTTGTTGTGGAGATCT+GGG - chr1_3:51938626-51938645 Msa0124260:intron 45.0%
!! CTAGTTGCTGGTTTGTTGAC+TGG - chr1_3:51939172-51939191 Msa0124260:intron 45.0%
TGATGTCAAGGTAAGTTCCC+AGG - chr1_3:51939246-51939265 Msa0124260:intron 45.0%
CCGTTTCGTGCGATGTTAAA+TGG - chr1_3:51939373-51939392 Msa0124260:intron 45.0%
CTTATCGCTCTTATACCCGA+AGG + chr1_3:51939454-51939473 None:intergenic 45.0%
CTCACTGCTTGAGCGATAAT+CGG - chr1_3:51939707-51939726 Msa0124260:CDS 45.0%
TCACTGCTTGAGCGATAATC+GGG - chr1_3:51939708-51939727 Msa0124260:CDS 45.0%
TAAGCAGCAGTTGGCAGTTA+TGG - chr1_3:51939756-51939775 Msa0124260:CDS 45.0%
TTGGCAGTTATGGTAGGTCA+AGG - chr1_3:51939766-51939785 Msa0124260:CDS 45.0%
AAGCAACAAGCAGAGACTGT+TGG - chr1_3:51939891-51939910 Msa0124260:CDS 45.0%
!! ACTGTTGGCCTTTCATCGTT+TGG - chr1_3:51939906-51939925 Msa0124260:CDS 45.0%
!! CTGTTGGCCTTTCATCGTTT+GGG - chr1_3:51939907-51939926 Msa0124260:CDS 45.0%
TGGGATGTGTAAGACTCTTG+CGG - chr1_3:51939926-51939945 Msa0124260:intron 45.0%
GATGCAGCCCTATACATGTA+GGG + chr1_3:51940204-51940223 None:intergenic 45.0%
AGATGCAGCCCTATACATGT+AGG + chr1_3:51940205-51940224 None:intergenic 45.0%
AGAGAATTCTCAAGGTGCAC+TGG - chr1_3:51940236-51940255 Msa0124260:intron 45.0%
CGTTAGAATGCTTGGAACTG+CGG - chr1_3:51940292-51940311 Msa0124260:intron 45.0%
GAATCGCTTGAACATCACGA+AGG + chr1_3:51940356-51940375 None:intergenic 45.0%
ATTTGACGACGGCAGATTGT+TGG - chr1_3:51940460-51940479 Msa0124260:intron 45.0%
TTTGACGACGGCAGATTGTT+GGG - chr1_3:51940461-51940480 Msa0124260:intron 45.0%
CTTGAATCTGATGCGGCAAA+AGG - chr1_3:51940549-51940568 Msa0124260:intron 45.0%
TGCCCTGTTTCACAACTTTC+AGG - chr1_3:51940869-51940888 Msa0124260:intron 45.0%
CAGCGAAAGAACTCCAACAT+TGG + chr1_3:51940911-51940930 None:intergenic 45.0%
TTGGAGTTCTTTCGCTGATG+TGG - chr1_3:51940914-51940933 Msa0124260:CDS 45.0%
!!! GTGACCCGTCTATTTTGATG+TGG - chr1_3:51940964-51940983 Msa0124260:CDS 45.0%
!! GTCCCCCTATTTCTAAAACC+GGG + chr1_3:51941103-51941122 None:intergenic 45.0%
GAGATCCAAGCTTTACGTCT+TGG - chr1_3:51941449-51941468 Msa0124260:CDS 45.0%
GTACTCCAAGACGTAAAGCT+TGG + chr1_3:51941457-51941476 None:intergenic 45.0%
TGCGGAGTTTACAGTTAGCT+TGG - chr1_3:51941610-51941629 Msa0124260:CDS 45.0%
CCTTTGCGCAGATTATCAGA+AGG + chr1_3:51941855-51941874 None:intergenic 45.0%
CCTTCTGATAATCTGCGCAA+AGG - chr1_3:51941852-51941871 Msa0124260:CDS 45.0%
TGATAATCTGCGCAAAGGTC+AGG - chr1_3:51941857-51941876 Msa0124260:CDS 45.0%
! AGTTCTGATGTGTAGGCTCT+AGG - chr1_3:51942024-51942043 Msa0124260:CDS 45.0%
! GTCAATGTGATGGAGAGAAG+AGG - chr1_3:51942163-51942182 Msa0124260:CDS 45.0%
!! AGAAGAGGAAGTGCTAGCTA+GGG - chr1_3:51942178-51942197 Msa0124260:CDS 45.0%
TGAGAAGAGATCCGAGTATG+GGG - chr1_3:51942726-51942745 Msa0124260:CDS 45.0%
CACAAAGGCAGATCTTGAGA+TGG - chr1_3:51942759-51942778 Msa0124260:CDS 45.0%
CTGTAAGGATACACACGAAG+TGG + chr1_3:51942799-51942818 None:intergenic 45.0%
GATGGACAACCATAAGGAAC+TGG - chr1_3:51942935-51942954 Msa0124260:five_prime_UTR 45.0%
CAATGGCTTCCAGTTCCTTA+TGG + chr1_3:51942947-51942966 None:intergenic 45.0%
!! AGCTCTAGATAGCTCAGCAA+TGG + chr1_3:51942964-51942983 None:intergenic 45.0%
CCCAAACCACCAAGAAATGT+TGG - chr1_3:51943094-51943113 Msa0124260:five_prime_UTR 45.0%
CAAACTTGACTCATGGTTCG+TGG + chr1_3:51943142-51943161 None:intergenic 45.0%
TAGCTCGCAAACTTGACTCA+TGG + chr1_3:51943149-51943168 None:intergenic 45.0%
AGTCAAGTTTGCGAGCTATG+AGG - chr1_3:51943151-51943170 Msa0124260:five_prime_UTR 45.0%
! GGGCATTCCTCTCTTTAGAA+AGG + chr1_3:51943313-51943332 None:intergenic 45.0%
!! AAATAAAAAATAAGATTAAT+GGG + chr1_3:51938370-51938389 None:intergenic 5.0%
!! AAAATAAAAAATAAGATTAA+TGG + chr1_3:51938371-51938390 None:intergenic 5.0%
! GGGTTGTTGTTGTGGAGATC+TGG - chr1_3:51938625-51938644 Msa0124260:intron 50.0%
CGAATATGGGCCGATAGATG+TGG - chr1_3:51939207-51939226 Msa0124260:intron 50.0%
! TTTCTGGGAATCGTCGTCTG+AGG - chr1_3:51939399-51939418 Msa0124260:intron 50.0%
CGATTATCGCTCAAGCAGTG+AGG + chr1_3:51939709-51939728 None:intergenic 50.0%
CAGCAGTTGGCAGTTATGGT+AGG - chr1_3:51939760-51939779 Msa0124260:CDS 50.0%
ATTTCCCCTGTCACTCGACT+CGG - chr1_3:51940084-51940103 Msa0124260:intron 50.0%
CATGCTCAAGCACAAGAGTG+CGG + chr1_3:51940434-51940453 None:intergenic 50.0%
GACAGTCATTGCTTCTCCTC+AGG - chr1_3:51940586-51940605 Msa0124260:intron 50.0%
CACTTCTCGAAGATGCCTTG+AGG - chr1_3:51941826-51941845 Msa0124260:CDS 50.0%
ATCTGCGCAAAGGTCAGGTA+CGG - chr1_3:51941862-51941881 Msa0124260:CDS 50.0%
!! GAGAAGAGGAAGTGCTAGCT+AGG - chr1_3:51942177-51942196 Msa0124260:CDS 50.0%
TCACAAAGCAAACGAGGCCT+TGG - chr1_3:51942350-51942369 Msa0124260:CDS 50.0%
TACCAGGCCCTGAACAATCT+TGG - chr1_3:51942517-51942536 Msa0124260:CDS 50.0%
TTCCAAGATTGTTCAGGGCC+TGG + chr1_3:51942522-51942541 None:intergenic 50.0%
! TGACAAGGCTGCTGCTTACA+AGG - chr1_3:51942657-51942676 Msa0124260:intron 50.0%
GAGTTCACGATCCCCATACT+CGG + chr1_3:51942740-51942759 None:intergenic 50.0%
TGGGGATCGTGAACTCACAA+AGG - chr1_3:51942744-51942763 Msa0124260:CDS 50.0%
CCTGCTGCTCGATATCTGTA+AGG + chr1_3:51942814-51942833 None:intergenic 50.0%
CCTTACAGATATCGAGCAGC+AGG - chr1_3:51942811-51942830 Msa0124260:CDS 50.0%
GCAGCGTTCCATGAACACAA+GGG - chr1_3:51943023-51943042 Msa0124260:five_prime_UTR 50.0%
CAGCGTTCCATGAACACAAG+GGG - chr1_3:51943024-51943043 Msa0124260:five_prime_UTR 50.0%
AGCGTTCCATGAACACAAGG+GGG - chr1_3:51943025-51943044 Msa0124260:five_prime_UTR 50.0%
ACGGTAACACAGGTGGCTGT+TGG + chr1_3:51938919-51938938 None:intergenic 55.0%
AAAGAAGCCTCCGCGAAGCA+TGG - chr1_3:51939077-51939096 Msa0124260:intron 55.0%
CAGGGGGAAGAACTAGTTGC+TGG - chr1_3:51939160-51939179 Msa0124260:intron 55.0%
CTGCTTGAGCGATAATCGGG+TGG - chr1_3:51939711-51939730 Msa0124260:CDS 55.0%
CTTGAGCGATAATCGGGTGG+TGG - chr1_3:51939714-51939733 Msa0124260:CDS 55.0%
TCCATCCGAGTCGAGTGACA+GGG + chr1_3:51940092-51940111 None:intergenic 55.0%
ATCCATCCGAGTCGAGTGAC+AGG + chr1_3:51940093-51940112 None:intergenic 55.0%
TTCCACCTCGCACCCAATGT+TGG - chr1_3:51940895-51940914 Msa0124260:intron 55.0%
GAACTCCAACATTGGGTGCG+AGG + chr1_3:51940903-51940922 None:intergenic 55.0%
CACAGACACAAACACGGCAC+TGG + chr1_3:51941360-51941379 None:intergenic 55.0%
ACTGTCCTGAGGCAGCTATG+CGG - chr1_3:51941592-51941611 Msa0124260:CDS 55.0%
AAACTCCGCATAGCTGCCTC+AGG + chr1_3:51941600-51941619 None:intergenic 55.0%
CGGCCAATGCATAGGCCTTT+AGG + chr1_3:51941767-51941786 None:intergenic 55.0%
ACCAGAGTCGGCCAATGCAT+AGG + chr1_3:51941775-51941794 None:intergenic 55.0%
!! AGAGGAAGTGCTAGCTAGGG+AGG - chr1_3:51942181-51942200 Msa0124260:CDS 55.0%
CACCATACTCGAGCCCATCA+GGG - chr1_3:51942607-51942626 Msa0124260:intron 55.0%
AACACGCGCAAGACCCTGAT+GGG + chr1_3:51942623-51942642 None:intergenic 55.0%
ACGCTGCGCGTAGATGTAAG+AGG + chr1_3:51943010-51943029 None:intergenic 55.0%
CGCAGCGTTCCATGAACACA+AGG - chr1_3:51943022-51943041 Msa0124260:five_prime_UTR 55.0%
GGACATCCCCCTTGTGTTCA+TGG + chr1_3:51943034-51943053 None:intergenic 55.0%
GACAGTCTCTTAGCGCACTC+AGG + chr1_3:51943055-51943074 None:intergenic 55.0%
AGACTGTCGTGCTGCACTCT+CGG - chr1_3:51943067-51943086 Msa0124260:five_prime_UTR 55.0%
CCATCCGAGTCGAGTGACAG+GGG + chr1_3:51940091-51940110 None:intergenic 60.0%
CTCCAACATTGGGTGCGAGG+TGG + chr1_3:51940900-51940919 None:intergenic 60.0%
! GCCTATGCATTGGCCGACTC+TGG - chr1_3:51941771-51941790 Msa0124260:CDS 60.0%
! GCATTGGCCGACTCTGGTCT+TGG - chr1_3:51941777-51941796 Msa0124260:CDS 60.0%
!! CCTGATGGGCTCGAGTATGG+TGG + chr1_3:51942609-51942628 None:intergenic 60.0%
CCACCATACTCGAGCCCATC+AGG - chr1_3:51942606-51942625 Msa0124260:intron 60.0%
!! GACCCTGATGGGCTCGAGTA+TGG + chr1_3:51942612-51942631 None:intergenic 60.0%
GAACACGCGCAAGACCCTGA+TGG + chr1_3:51942624-51942643 None:intergenic 60.0%
GAAGCCTCCGCGAAGCATGG+CGG - chr1_3:51939080-51939099 Msa0124260:intron 65.0%
TCGCTCTCCGCCATGCTTCG+CGG + chr1_3:51939090-51939109 None:intergenic 65.0%
!! CCCCTGTCACTCGACTCGGA+TGG - chr1_3:51940088-51940107 Msa0124260:intron 65.0%
CTGTCGTGCTGCACTCTCGG+TGG - chr1_3:51943070-51943089 Msa0124260:five_prime_UTR 65.0%
CTCTCCGCCATGCTTCGCGG+AGG + chr1_3:51939087-51939106 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51938020 51943494 51938020 ID=Msa0124260;Name=Msa0124260
chr1_3 mRNA 51938020 51943494 51938020 ID=Msa0124260-mRNA-1;Parent=Msa0124260;Name=Msa0124260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=652|1|1|1|1|1|5|343|886
chr1_3 exon 51938020 51938583 51938020 ID=Msa0124260-mRNA-1:exon:15898;Parent=Msa0124260-mRNA-1
chr1_3 exon 51938682 51938991 51938682 ID=Msa0124260-mRNA-1:exon:15897;Parent=Msa0124260-mRNA-1
chr1_3 exon 51939636 51939927 51939636 ID=Msa0124260-mRNA-1:exon:15896;Parent=Msa0124260-mRNA-1
chr1_3 exon 51940907 51942616 51940907 ID=Msa0124260-mRNA-1:exon:15895;Parent=Msa0124260-mRNA-1
chr1_3 exon 51942715 51943494 51942715 ID=Msa0124260-mRNA-1:exon:15894;Parent=Msa0124260-mRNA-1
chr1_3 five_prime_UTR 51942843 51943494 51942843 ID=Msa0124260-mRNA-1:five_prime_utr;Parent=Msa0124260-mRNA-1
chr1_3 CDS 51942715 51942842 51942715 ID=Msa0124260-mRNA-1:cds;Parent=Msa0124260-mRNA-1
chr1_3 CDS 51940907 51942616 51940907 ID=Msa0124260-mRNA-1:cds;Parent=Msa0124260-mRNA-1
chr1_3 CDS 51939636 51939927 51939636 ID=Msa0124260-mRNA-1:cds;Parent=Msa0124260-mRNA-1
chr1_3 CDS 51938682 51938991 51938682 ID=Msa0124260-mRNA-1:cds;Parent=Msa0124260-mRNA-1
chr1_3 CDS 51938363 51938583 51938363 ID=Msa0124260-mRNA-1:cds;Parent=Msa0124260-mRNA-1
chr1_3 three_prime_UTR 51938020 51938362 51938020 ID=Msa0124260-mRNA-1:three_prime_utr;Parent=Msa0124260-mRNA-1
Gene Sequence

>Msa0124260

ATGAGGACTTTCTTCAATGGAGAATCATCCAAAGAAGAGCACTTAAGTTCTCTTAATCCACAATCATGGCTTCAAGTTGAAAGAGGGAAGCTTCCCAAATTGTCACCACAATCCTCTTCTGCATCAATTGAATCTCTAATCAAGGTCCAACAGCCACCTGTGTTACCGTTCTTTAAACCGGTTGATTATGTCGAAGTTTTAGCTCAAATCCATGAAGAACTTGAGTCATGTTCTTCACAGGAACAGTCAAATCTGTTTCTGTTTCAATATCAGGTTTTTAAAGGCCTTGGTGATGTTAAACTGATGCAAAGAAGCCTCCGCGAAGCATGGCGGAGAGCGAGTTCTGTTCACGAGATGATTGTATTTGGGGCATGGTTGAAATATGAGAAGCAGGGGGAAGAACTAGTTGCTGGTTTGTTGACTGGTAAACGTCAAAACGAATATGGGCCGATAGATGTGGAGTCTCATATTCCTTCTGATGTCAAGGTAAGTTCCCAGGAGAGTGTTTTGATGAATGGGAACAACACTTCACAATATGTTGTTTTTATAATTGGCGATGAGAGGATAGTCTGTGATAGACAAAAGTTTTCTGAACTGTCAGCGCCGTTTCGTGCGATGTTAAATGGGGATTTCTGGGAATCGTCGTCTGAGGCTATAGATTTGTCTGAAAACAATATATCTCCTTCGGGTATAAGAGCGATAAGTTATTTCAGTATGACTGGTAGTTTACTTGAACAAGTCTCTCCAAAACTTTTGTTGGAGATATTAGTTTTTTCCAACAAGTATTGTTGTGATAGATTAAAAGAGGCTTGTGATAGAAGACTTGCATCCTTAGTTACTTCCAAAGAAGATGCTATCGAACTCATGGAATATGCTCTTGATGAGAACTCAGTTGTCCTTGCAGCTTCTTGTTTACAAGTCCTTTTACGTGATCTTCCTCACTGCTTGAGCGATAATCGGGTGGTGGATATATTTCTTCATGCTAATAAGCAGCAGTTGGCAGTTATGGTAGGTCAAGGTTTATTTGCGCTTTTCTGCTTCTTAAGCGAAGTTTCTATGAACCTTAACTCTAGTTCAGACACAACAGCTCATTTTCTGGAAAGGTTAGCTGATTTTGCTGAAAGCAACAAGCAGAGACTGTTGGCCTTTCATCGTTTGGGATGTGTAAGACTCTTGCGGAAAGAATACGACGAAGCTCGCTGTCTTTTTGAGAGCGCTGTAAATAATGGCCATGTTTATTCTGTTACTGGTTTAGCTCGACTTGACTCTATAAAAGGTGAGAAGGATTTATCTTATGAGAAGATCAGCTCAGTCATTTCCCCTGTCACTCGACTCGGATGGATGTACCAAGAAAGATCACTATATTGTGATGATGATTTGAGATGGAAAGACCTTGAGAAAGCAACTGAACTTGACCCCACTCTTGTATATCCCTACATGTATAGGGCTGCATCTTTAATGAGGACAGAGAATTCTCAAGGTGCACTGGCTGAAATTAATCGGATACTTGGCTTTAAACTTTCGTTAGAATGCTTGGAACTGCGGTTTTTTATATATCTGGCTCTTGAGGACTACAAAGCAGCCCTTCGTGATGTTCAAGCGATTCTTACTTTGTGTCCGCGTTATAGAATGTTTGAGGGGCGCGTAGCTGCATCTCAACTCCGCACTCTTGTGCTTGAGCATGTTGAACATTTGACGACGGCAGATTGTTGGGCACAATTATATGACTGTTGGTCTGCTGTTGATGATATTGAGTCTCTATCTGTTATTTATCAGATGCTTGAATCTGATGCGGCAAAAGGTGTTCTATACTTCAGACAGTCATTGCTTCTCCTCAGGCTAAACTGTCCTGAGGCAGCTATGCGGAGTTTACAGTTAGCTTGGCAACATGCATCAAGTGAGCATGAAAGACTTGTATATGAGGGGTGGATTTTGTATGATACTGGTCATTATGAGGAAGGGCTCCAAAAAGCTGAAGAGTCTATTTGCATTAAAAGGTCTTTTGAGGCATTTTTCCTAAAGGCCTATGCATTGGCCGACTCTGGTCTTGGTTCAATATGTTCTTCAACTGTTATTTCACTTCTCGAAGATGCCTTGAGGTGTCCTTCTGATAATCTGCGCAAAGGTCAGGCCCTGAACAATCTTGGAAGTGTTTTTGTTGATCATGGAAAACTGGACCAAGCAGCCGATTGCTATATTAAAGCCCTTAAAATCCACCATACTCGAGCCCATCAGGGTCTTGCGCGTGTTCATTTTCTAAAAAATGACAAGGCTGCTGCTTACAAGGAAATGACCAAACTTATCGAGAAGGCAAAAAACAATGCGTCGGCGTATGAGAAGAGATCCGAGTATGGGGATCGTGAACTCACAAAGGCAGATCTTGAGATGGTGACTAGACTAGATCCACTTCGTGTGTATCCTTACAGATATCGAGCAGCAGTTTTGATGGACAACCATAAGGAACTGGAAGCCATTGCTGAGCTATCTAGAGCTATTGCATTTAAAGCTGATTTGCACCTCTTACATCTACGCGCAGCGTTCCATGAACACAAGGGGGATGTCCTGAGTGCGCTAAGAGACTGTCGTGCTGCACTCTCGGTGGACCCAAACCACCAAGAAATGTTGGAACTTCATACGCGTGTTAATAGCCACGAACCATGA
Protein sequence

>Msa0124260

MRTFFNGESSKEEHLSSLNPQSWLQVERGKLPKLSPQSSSASIESLIKVQQPPVLPFFKPVDYVEVLAQIHEELESCSSQEQSNLFLFQYQVFKGLGDVKLMQRSLREAWRRASSVHEMIVFGAWLKYEKQGEELVAGLLTGKRQNEYGPIDVESHIPSDVKVSSQESVLMNGNNTSQYVVFIIGDERIVCDRQKFSELSAPFRAMLNGDFWESSSEAIDLSENNISPSGIRAISYFSMTGSLLEQVSPKLLLEILVFSNKYCCDRLKEACDRRLASLVTSKEDAIELMEYALDENSVVLAASCLQVLLRDLPHCLSDNRVVDIFLHANKQQLAVMVGQGLFALFCFLSEVSMNLNSSSDTTAHFLERLADFAESNKQRLLAFHRLGCVRLLRKEYDEARCLFESAVNNGHVYSVTGLARLDSIKGEKDLSYEKISSVISPVTRLGWMYQERSLYCDDDLRWKDLEKATELDPTLVYPYMYRAASLMRTENSQGALAEINRILGFKLSLECLELRFFIYLALEDYKAALRDVQAILTLCPRYRMFEGRVAASQLRTLVLEHVEHLTTADCWAQLYDCWSAVDDIESLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLAWQHASSEHERLVYEGWILYDTGHYEEGLQKAEESICIKRSFEAFFLKAYALADSGLGSICSSTVISLLEDALRCPSDNLRKGQALNNLGSVFVDHGKLDQAADCYIKALKIHHTRAHQGLARVHFLKNDKAAAYKEMTKLIEKAKNNASAYEKRSEYGDRELTKADLEMVTRLDPLRVYPYRYRAAVLMDNHKELEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLSALRDCRAALSVDPNHQEMLELHTRVNSHEP*