Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028630 | XP_003590600.1 | 97.015 | 737 | 22 | 0 | 4 | 740 | 6 | 742 | 0.0 | 1474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028630 | sp|Q42777|MCCA_SOYBN | 83.784 | 740 | 110 | 2 | 1 | 740 | 1 | 730 | 0.0 | 1255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028630 | G7IDL5 | 97.015 | 737 | 22 | 0 | 4 | 740 | 6 | 742 | 0.0 | 1474 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028630 | Msa0611320 | 0.817869 | 2.636778e-52 | -8.615850e-47 |
| Msa0028630 | Msa0651620 | 0.822915 | 1.834316e-53 | -8.615850e-47 |
| Msa0028630 | Msa0693950 | 0.803474 | 3.426048e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028630 | MtrunA17_Chr1g0185251 | 97.015 | 737 | 22 | 0 | 4 | 740 | 6 | 742 | 0.0 | 1474 |
| Msa0028630 | MtrunA17_Chr8g0389041 | 47.450 | 451 | 236 | 1 | 42 | 492 | 72 | 521 | 4.44e-141 | 427 |
| Msa0028630 | MtrunA17_Chr3g0115531 | 32.613 | 509 | 272 | 9 | 43 | 485 | 39 | 542 | 2.74e-64 | 234 |
| Msa0028630 | MtrunA17_Chr3g0115521 | 36.697 | 327 | 171 | 5 | 43 | 337 | 17 | 339 | 7.56e-53 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028630 | AT1G03090.2 | 71.154 | 728 | 203 | 6 | 16 | 739 | 9 | 733 | 0.0 | 1050 |
| Msa0028630 | AT1G03090.1 | 69.093 | 728 | 198 | 7 | 16 | 739 | 9 | 713 | 0.0 | 1009 |
| Msa0028630 | AT5G35360.1 | 47.875 | 447 | 232 | 1 | 44 | 490 | 75 | 520 | 1.92e-137 | 418 |
| Msa0028630 | AT5G35360.3 | 47.875 | 447 | 232 | 1 | 44 | 490 | 75 | 520 | 4.48e-137 | 417 |
| Msa0028630 | AT5G35360.2 | 48.681 | 417 | 213 | 1 | 44 | 460 | 75 | 490 | 2.05e-129 | 395 |
| Msa0028630 | AT1G36160.2 | 31.907 | 514 | 279 | 9 | 38 | 485 | 32 | 540 | 1.80e-64 | 236 |
| Msa0028630 | AT1G36160.1 | 31.907 | 514 | 279 | 9 | 38 | 485 | 32 | 540 | 1.80e-64 | 236 |
| Msa0028630 | AT1G36180.1 | 29.845 | 516 | 283 | 7 | 40 | 485 | 136 | 642 | 2.03e-59 | 220 |
| Msa0028630 | AT1G36180.2 | 31.387 | 274 | 150 | 4 | 40 | 280 | 136 | 404 | 1.23e-32 | 132 |
| Msa0028630 | AT1G36180.3 | 31.618 | 272 | 148 | 4 | 40 | 278 | 136 | 402 | 3.28e-32 | 130 |
Find 193 sgRNAs with CRISPR-Local
Find 536 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTGAAATCATAGATATT+TGG | 0.106394 | 1_1:+53648024 | Msa0028630:intron |
| TTGGCAGTCCGGGTGGATAC+TGG | 0.213900 | 1_1:+53650461 | Msa0028630:intron |
| GCTCAACTTTGTGAAGATAA+TGG | 0.226378 | 1_1:+53645539 | Msa0028630:CDS |
| CTTGATGCTGCTTTGCGTTC+TGG | 0.229725 | 1_1:+53645393 | Msa0028630:CDS |
| GTTTGAAATCATAGATATTT+GGG | 0.237908 | 1_1:+53648025 | Msa0028630:intron |
| AAATGAAGCATATTCATATT+TGG | 0.246656 | 1_1:+53651772 | Msa0028630:CDS |
| TTTGAACAGGGACCTGATTC+TGG | 0.259168 | 1_1:+53652946 | Msa0028630:CDS |
| TAGGCTATTCATCCTGGATA+TGG | 0.265996 | 1_1:+53645491 | Msa0028630:intron |
| CTCAACTTTGTGAAGATAAT+GGG | 0.286996 | 1_1:+53645540 | Msa0028630:CDS |
| CATTATTTCAAAGAGAAAAT+AGG | 0.288208 | 1_1:+53651810 | Msa0028630:CDS |
| AGCAGCTTCATATGCTTCTT+TGG | 0.288311 | 1_1:-53651073 | None:intergenic |
| TCCGAGTCTCTTAGCGGTTC+TGG | 0.299811 | 1_1:-53645247 | None:intergenic |
| TATATTCTTGCACAGGTTGC+AGG | 0.303239 | 1_1:+53650919 | Msa0028630:intron |
| AATCACTGGGCATTTGAAAA+TGG | 0.310453 | 1_1:+53650979 | Msa0028630:CDS |
| ATTCATTGTAACTTGACAAT+TGG | 0.321314 | 1_1:-53653085 | None:intergenic |
| TCCTGAGTTTCGTGCACACT+TGG | 0.324396 | 1_1:+53648227 | Msa0028630:CDS |
| CATGGCAGGCTTGGTGGTTA+AGG | 0.340759 | 1_1:+53651917 | Msa0028630:CDS |
| TACTTCCAGACAAATGAAAA+TGG | 0.343761 | 1_1:+53651504 | Msa0028630:intron |
| CGCGTCTGCGATCCGAGATA+TGG | 0.345343 | 1_1:+53645583 | Msa0028630:CDS |
| GCAGGGGTGCCGCTTGTGCC+TGG | 0.346382 | 1_1:+53646855 | Msa0028630:CDS |
| AAGCTGGAGGCGGATCAAAT+TGG | 0.362608 | 1_1:+53646912 | Msa0028630:CDS |
| CGTGAAGCAGCTGCTTCTTT+CGG | 0.364602 | 1_1:+53647717 | Msa0028630:CDS |
| TCATCTCCATAAAGTAAAAC+TGG | 0.365913 | 1_1:-53649279 | None:intergenic |
| CAATCACAAATACCAATATT+AGG | 0.367411 | 1_1:+53649486 | Msa0028630:CDS |
| TGGCAGTCCGGGTGGATACT+GGG | 0.369627 | 1_1:+53650462 | Msa0028630:intron |
| TTAACCATCCATCCAGAATC+AGG | 0.370597 | 1_1:-53652958 | None:intergenic |
| CAGTGCATCGAAGAGAATAA+TGG | 0.370914 | 1_1:+53646827 | Msa0028630:intron |
| AAAGGATTTCTTCCAGCAAC+TGG | 0.371624 | 1_1:+53650272 | Msa0028630:CDS |
| AAAACTGAATCACCTAATAT+TGG | 0.373322 | 1_1:-53649498 | None:intergenic |
| GGAGATGAATACCCGTCTTC+AGG | 0.376874 | 1_1:+53649294 | Msa0028630:CDS |
| TCGAGGAACGCCAGATGATT+CGG | 0.383458 | 1_1:-53651877 | None:intergenic |
| TTCATTGTAACTTGACAATT+GGG | 0.391054 | 1_1:-53653084 | None:intergenic |
| CTCCATGAGTTGGCTTTATG+AGG | 0.391727 | 1_1:-53646944 | None:intergenic |
| AGTGCATCGAAGAGAATAAT+GGG | 0.399850 | 1_1:+53646828 | Msa0028630:intron |
| AGAAGAAAGTTGACATTAGT+TGG | 0.401474 | 1_1:-53650946 | None:intergenic |
| GCAGCAGCTTACACCCTATA+TGG | 0.403342 | 1_1:+53651255 | Msa0028630:CDS |
| TTCTAAAGCTCGCTAATCAC+TGG | 0.404306 | 1_1:+53650965 | Msa0028630:CDS |
| TATGCTTCTTTGGCAGACTC+TGG | 0.404851 | 1_1:-53651063 | None:intergenic |
| TGGTGCAGTACTCCAGTTGC+TGG | 0.406490 | 1_1:-53650284 | None:intergenic |
| ATTCGGATTGTGGTTTATGT+TGG | 0.407925 | 1_1:-53651860 | None:intergenic |
| GCGACGAATTATACCATATA+GGG | 0.415807 | 1_1:-53651268 | None:intergenic |
| CTCAAGTTCTATTGTACGCT+TGG | 0.417279 | 1_1:-53651312 | None:intergenic |
| GTTGTAAAGGCACCATCATC+TGG | 0.421229 | 1_1:+53652111 | Msa0028630:CDS |
| GCTGTTGTGGCACCCATGGC+AGG | 0.425249 | 1_1:+53651903 | Msa0028630:CDS |
| AAGTCCTGGTTTAGAAGTTA+AGG | 0.426075 | 1_1:+53651527 | Msa0028630:CDS |
| AATGATTCAGCAAATTCATC+TGG | 0.427130 | 1_1:-53647681 | None:intergenic |
| TTTATAGTTGATACAGTCTC+TGG | 0.430379 | 1_1:+53649256 | Msa0028630:CDS |
| GTTGCTGGAAGAAATCCTTT+TGG | 0.434546 | 1_1:-53650269 | None:intergenic |
| TTTCCTCCTCCTCCATGAGT+TGG | 0.434784 | 1_1:-53646954 | None:intergenic |
| ACAAGTTACAGTGGGTGAAC+AGG | 0.434989 | 1_1:+53652149 | Msa0028630:CDS |
| AGCTGGAGGCGGATCAAATT+GGG | 0.437235 | 1_1:+53646913 | Msa0028630:CDS |
| TGCTTTGCGTTCTGGTGCTC+AGG | 0.438590 | 1_1:+53645401 | Msa0028630:CDS |
| TTCGGATTGTGGTTTATGTT+GGG | 0.442501 | 1_1:-53651859 | None:intergenic |
| TGTGGCACCCATGGCAGGCT+TGG | 0.443437 | 1_1:+53651908 | Msa0028630:CDS |
| TATCACGTTCCAGTCTCATC+AGG | 0.445003 | 1_1:+53650308 | Msa0028630:CDS |
| GGCGGATCAAATTGGGTATC+CGG | 0.445921 | 1_1:+53646920 | Msa0028630:CDS |
| TCAACAAGTAATCAATCTGC+AGG | 0.449095 | 1_1:-53653048 | None:intergenic |
| ATGAGACTGGAACGTGATAA+TGG | 0.461896 | 1_1:-53650304 | None:intergenic |
| ATTGATTAGGCTATTCATCC+TGG | 0.462287 | 1_1:+53645485 | Msa0028630:intron |
| ATGGTTTGAGTGTGTGAGGT+TGG | 0.463624 | 1_1:-53645124 | None:intergenic |
| CCTCAAGTTGTCTGAGGTTG+AGG | 0.470031 | 1_1:+53651833 | Msa0028630:CDS |
| CAATGAGACATGCAGCTACA+AGG | 0.472142 | 1_1:-53651110 | None:intergenic |
| GGCACCCATGGCAGGCTTGG+TGG | 0.472184 | 1_1:+53651911 | Msa0028630:CDS |
| GCAGTTAACTATTACAATGC+TGG | 0.473300 | 1_1:+53649223 | Msa0028630:CDS |
| CCTGTCACAGAGATGATTGT+TGG | 0.474201 | 1_1:+53649405 | Msa0028630:CDS |
| ACAAATGAAAATGGAAGTCC+TGG | 0.476875 | 1_1:+53651513 | Msa0028630:CDS |
| TTATACAGGAGTACAACTTC+AGG | 0.477152 | 1_1:+53652915 | Msa0028630:intron |
| ACGCCAGATGATTCGGATTG+TGG | 0.480065 | 1_1:-53651870 | None:intergenic |
| GATTGCTAAGCTTGTAGTGC+AGG | 0.481722 | 1_1:+53650526 | Msa0028630:CDS |
| TGTGAATAATGTAGGGTATG+AGG | 0.485774 | 1_1:+53647646 | Msa0028630:intron |
| TCAATCAGGTACCTCCCATC+AGG | 0.486059 | 1_1:-53651395 | None:intergenic |
| ACTACAAGCTTAGCAATCAT+TGG | 0.488675 | 1_1:-53650521 | None:intergenic |
| TATGCTGAAAATGTTCCAAA+AGG | 0.494864 | 1_1:+53650254 | Msa0028630:CDS |
| TGTGATTGACTCAGTGGAAG+AGG | 0.496712 | 1_1:-53649471 | None:intergenic |
| AGAAAATCGTGCTGCAGCAT+TGG | 0.497628 | 1_1:+53650550 | Msa0028630:CDS |
| CTCTTTGAAATAATGATGAA+AGG | 0.504826 | 1_1:-53651802 | None:intergenic |
| TTGTACGCTTGGCTTGATGA+TGG | 0.506428 | 1_1:-53651301 | None:intergenic |
| TGTTCATCTCCATGATATCC+AGG | 0.508357 | 1_1:-53646873 | None:intergenic |
| CTGCTTCACGTTGTGCTGCA+AGG | 0.510146 | 1_1:-53647704 | None:intergenic |
| CCGCTTGTGCCTGGATATCA+TGG | 0.510450 | 1_1:+53646864 | Msa0028630:CDS |
| AAACCACAATCCGAATCATC+TGG | 0.512112 | 1_1:+53651867 | Msa0028630:CDS |
| CCATCACTTACCTGCCTGAT+GGG | 0.513128 | 1_1:+53651381 | Msa0028630:CDS |
| TGAGTTGGCTTTATGAGGAC+CGG | 0.513918 | 1_1:-53646939 | None:intergenic |
| AGATATTGATAAAATGAAGC+TGG | 0.515459 | 1_1:+53646896 | Msa0028630:CDS |
| ACCGATGCGAATGGCTTCAT+CGG | 0.515750 | 1_1:-53645328 | None:intergenic |
| ACCTCTTGTCACCCATATCT+CGG | 0.518280 | 1_1:-53645595 | None:intergenic |
| CCATCATCTGGCTATGTACA+CGG | 0.518966 | 1_1:+53652123 | Msa0028630:CDS |
| TAGTGTTCTCTTCAATGTAA+AGG | 0.520091 | 1_1:+53652182 | Msa0028630:CDS |
| GCGTCTGCGATCCGAGATAT+GGG | 0.520118 | 1_1:+53645584 | Msa0028630:CDS |
| AAGCATATTCATATTTGGCA+AGG | 0.520799 | 1_1:+53651777 | Msa0028630:CDS |
| ACGCAAAGCAGCATCAAGAA+TGG | 0.520955 | 1_1:-53645388 | None:intergenic |
| AGGAGCTGTTGTGGCACCCA+TGG | 0.523912 | 1_1:+53651899 | Msa0028630:CDS |
| TGTTAGGAGATACCTCAATC+AGG | 0.524794 | 1_1:-53651409 | None:intergenic |
| CGTTCCTCGAGGAGCTGTTG+TGG | 0.524888 | 1_1:+53651890 | Msa0028630:CDS |
| TTGGTCAAGATCTTGTTGAA+TGG | 0.524905 | 1_1:+53649424 | Msa0028630:CDS |
| CCTGAGTTTCGTGCACACTT+GGG | 0.526725 | 1_1:+53648228 | Msa0028630:CDS |
| CCCAAGTGTGCACGAAACTC+AGG | 0.529290 | 1_1:-53648228 | None:intergenic |
| CATTTCGACGGAATAGTAAG+AGG | 0.534481 | 1_1:-53645083 | None:intergenic |
| ACCATCACTTACCTGCCTGA+TGG | 0.535824 | 1_1:+53651380 | Msa0028630:CDS |
| CATCGCTTCTAATACTAACA+CGG | 0.535908 | 1_1:-53651979 | None:intergenic |
| CAGTTAACTATTACAATGCT+GGG | 0.536235 | 1_1:+53649224 | Msa0028630:CDS |
| GGCGACGAATTATACCATAT+AGG | 0.537273 | 1_1:-53651269 | None:intergenic |
| AGTATTAGAAGCGATGAAGA+TGG | 0.537584 | 1_1:+53651986 | Msa0028630:CDS |
| CTATTACAATGCTGGGACAG+TGG | 0.539485 | 1_1:+53649231 | Msa0028630:CDS |
| TTACAAGGAAGATCTCTTTG+TGG | 0.540536 | 1_1:+53651029 | Msa0028630:CDS |
| GTGGATACTGGGGTTAAAGA+AGG | 0.540766 | 1_1:+53650473 | Msa0028630:CDS |
| TAGATATTTGGGGATAAGCA+TGG | 0.543223 | 1_1:+53648036 | Msa0028630:intron |
| CTTAACCACCAAGCCTGCCA+TGG | 0.543875 | 1_1:-53651916 | None:intergenic |
| AAGCCAACTCATGGAGGAGG+AGG | 0.544594 | 1_1:+53646951 | Msa0028630:CDS |
| GAACGAGACTAGAGTAGAGG+TGG | 0.545913 | 1_1:+53651950 | Msa0028630:CDS |
| CCAACAATCATCTCTGTGAC+AGG | 0.550000 | 1_1:-53649405 | None:intergenic |
| AAGAAGCATATGAAGCTGCT+AGG | 0.550491 | 1_1:+53651076 | Msa0028630:CDS |
| GTCCTCATAAAGCCAACTCA+TGG | 0.551340 | 1_1:+53646942 | Msa0028630:CDS |
| CAATCCAAGCACCTGAAGAC+GGG | 0.552016 | 1_1:-53649305 | None:intergenic |
| TGATAAAATGAAGCTGGAGG+CGG | 0.556758 | 1_1:+53646902 | Msa0028630:CDS |
| TTGAGGTAACTGAGACGAGC+TGG | 0.562185 | 1_1:-53645357 | None:intergenic |
| ATCACGTTCCAGTCTCATCA+GGG | 0.562225 | 1_1:+53650309 | Msa0028630:CDS |
| ACCAGAACCGCTAAGAGACT+CGG | 0.564021 | 1_1:+53645246 | Msa0028630:CDS |
| ACTTGGACTTCTATGTGCCT+CGG | 0.565176 | 1_1:-53647777 | None:intergenic |
| GCGAATTCCGAGTCTCTTAG+CGG | 0.567807 | 1_1:-53645253 | None:intergenic |
| ATCGGAAGATGCGACGTGGA+GGG | 0.569374 | 1_1:-53645310 | None:intergenic |
| CCGTGTACATAGCCAGATGA+TGG | 0.569395 | 1_1:-53652123 | None:intergenic |
| GTATCTGCTAGAAACCCCTC+TGG | 0.569561 | 1_1:+53651147 | Msa0028630:CDS |
| TCAGGTACCTCCCATCAGGC+AGG | 0.569644 | 1_1:-53651391 | None:intergenic |
| TGGGATAATGAGTATGATAG+TGG | 0.569926 | 1_1:+53651335 | Msa0028630:CDS |
| GGGACCTGATTCTGGATGGA+TGG | 0.569974 | 1_1:+53652954 | Msa0028630:CDS |
| TCGTGCACACTTGGGTCAAG+CGG | 0.577845 | 1_1:+53648236 | Msa0028630:CDS |
| AGATATTTGGGGATAAGCAT+GGG | 0.581496 | 1_1:+53648037 | Msa0028630:intron |
| CCCATCAGGCAGGTAAGTGA+TGG | 0.581725 | 1_1:-53651381 | None:intergenic |
| AGCGGCTGTTTCTGCAGCAA+AGG | 0.582841 | 1_1:+53648254 | Msa0028630:CDS |
| CCTCAACCTCAGACAACTTG+AGG | 0.583474 | 1_1:-53651833 | None:intergenic |
| CTTTAACCCCAGTATCCACC+CGG | 0.583908 | 1_1:-53650469 | None:intergenic |
| TCAATCCAAGCACCTGAAGA+CGG | 0.586555 | 1_1:-53649306 | None:intergenic |
| AGCATATTCATATTTGGCAA+GGG | 0.586731 | 1_1:+53651778 | Msa0028630:CDS |
| AACTCATGGAGGAGGAGGAA+AGG | 0.587028 | 1_1:+53646956 | Msa0028630:CDS |
| GGCAGTCCGGGTGGATACTG+GGG | 0.587202 | 1_1:+53650463 | Msa0028630:intron |
| AACAGGGACCTGATTCTGGA+TGG | 0.589617 | 1_1:+53652950 | Msa0028630:CDS |
| ATAAAGCCAACTCATGGAGG+AGG | 0.590091 | 1_1:+53646948 | Msa0028630:CDS |
| TGGCGGAGGACCGATGCGAA+TGG | 0.590452 | 1_1:-53645337 | None:intergenic |
| TCTTGGTAGCAGCATTTCGA+CGG | 0.591381 | 1_1:-53645095 | None:intergenic |
| TGATGGGAGGTACCTGATTG+AGG | 0.591569 | 1_1:+53651397 | Msa0028630:CDS |
| TGCAGCATTGGTCAAACTGA+AGG | 0.592347 | 1_1:+53650562 | Msa0028630:CDS |
| GAAGAACGAGACTAGAGTAG+AGG | 0.594644 | 1_1:+53651947 | Msa0028630:CDS |
| AATGAGACATGCAGCTACAA+GGG | 0.596435 | 1_1:-53651109 | None:intergenic |
| TTAACCACCAAGCCTGCCAT+GGG | 0.600307 | 1_1:-53651915 | None:intergenic |
| ATTAGAAGCGATGAAGATGG+AGG | 0.600310 | 1_1:+53651989 | Msa0028630:CDS |
| TCCGATGAAGCCATTCGCAT+CGG | 0.600397 | 1_1:+53645327 | Msa0028630:CDS |
| ATCGCTTCTAATACTAACAC+GGG | 0.601108 | 1_1:-53651978 | None:intergenic |
| TACTATCTTGGCAGTCCGGG+TGG | 0.602785 | 1_1:+53650454 | Msa0028630:intron |
| GAAATAACATTAACAAAACA+TGG | 0.604575 | 1_1:+53645053 | Msa0028630:exon |
| AACGAGACTAGAGTAGAGGT+GGG | 0.605855 | 1_1:+53651951 | Msa0028630:CDS |
| TCTAAAGCTCGCTAATCACT+GGG | 0.606579 | 1_1:+53650966 | Msa0028630:CDS |
| TAACTGAGACGAGCTGGCGG+AGG | 0.607155 | 1_1:-53645351 | None:intergenic |
| GCTTGATGATGGACTCTGAA+AGG | 0.607321 | 1_1:-53651290 | None:intergenic |
| ACTCACGTGCACGCACGTGA+TGG | 0.611362 | 1_1:-53645143 | None:intergenic |
| AGCGTACAATAGAACTTGAG+TGG | 0.613569 | 1_1:+53651315 | Msa0028630:CDS |
| TTTGAAATCATAGATATTTG+GGG | 0.616417 | 1_1:+53648026 | Msa0028630:intron |
| CATATCTCGGATCGCAGACG+CGG | 0.616726 | 1_1:-53645582 | None:intergenic |
| GTGGGTGAACAGGTTTCTGA+TGG | 0.623037 | 1_1:+53652159 | Msa0028630:CDS |
| CATCGGAAGATGCGACGTGG+AGG | 0.623995 | 1_1:-53645311 | None:intergenic |
| GCGTACAATAGAACTTGAGT+GGG | 0.626510 | 1_1:+53651316 | Msa0028630:CDS |
| ATTGCTAAGCTTGTAGTGCA+GGG | 0.627887 | 1_1:+53650527 | Msa0028630:CDS |
| CATCATCTGGCTATGTACAC+GGG | 0.628210 | 1_1:+53652124 | Msa0028630:CDS |
| CAAGAATGGAAGAAGAGTTG+AGG | 0.630013 | 1_1:-53645374 | None:intergenic |
| TGGCAAATACATGTTGCGAA+TGG | 0.631195 | 1_1:+53649444 | Msa0028630:CDS |
| CGTGATGGTTTGAGTGTGTG+AGG | 0.633579 | 1_1:-53645128 | None:intergenic |
| ATATCTCGGATCGCAGACGC+GGG | 0.637876 | 1_1:-53645581 | None:intergenic |
| GTTGCCTTAACTTCTAAACC+AGG | 0.644145 | 1_1:-53651531 | None:intergenic |
| CACGTTCCAGTCTCATCAGG+GGG | 0.646268 | 1_1:+53650311 | Msa0028630:CDS |
| TCCGAGATATGGGTGACAAG+AGG | 0.648105 | 1_1:+53645594 | Msa0028630:CDS |
| CTTCATCGGAAGATGCGACG+TGG | 0.649200 | 1_1:-53645314 | None:intergenic |
| TAACCTTGCTGTATACTCGA+AGG | 0.652566 | 1_1:+53651608 | Msa0028630:CDS |
| CTCATAAAGCCAACTCATGG+AGG | 0.653231 | 1_1:+53646945 | Msa0028630:CDS |
| TCTCGGATCGCAGACGCGGG+AGG | 0.656917 | 1_1:-53645578 | None:intergenic |
| CCATGATATCCAGGCACAAG+CGG | 0.659003 | 1_1:-53646864 | None:intergenic |
| TATTGATAAAATGAAGCTGG+AGG | 0.661668 | 1_1:+53646899 | Msa0028630:CDS |
| AGCGTCGCTGTAAACAGCGA+CGG | 0.662053 | 1_1:-53645277 | None:intergenic |
| GAATCATCTGGCGTTCCTCG+AGG | 0.663639 | 1_1:+53651879 | Msa0028630:CDS |
| CACGGGCTACAAGTTACAGT+GGG | 0.664595 | 1_1:+53652141 | Msa0028630:CDS |
| AATAGGCCTCAAGTTGTCTG+AGG | 0.670011 | 1_1:+53651827 | Msa0028630:CDS |
| TCACTTACCTGCCTGATGGG+AGG | 0.670495 | 1_1:+53651384 | Msa0028630:CDS |
| GGTATTTGTGATTGACTCAG+TGG | 0.671721 | 1_1:-53649477 | None:intergenic |
| TCACGTTCCAGTCTCATCAG+GGG | 0.678072 | 1_1:+53650310 | Msa0028630:CDS |
| AAAATTCTAATAGCAAACAG+AGG | 0.681949 | 1_1:+53645204 | Msa0028630:CDS |
| AGGTAACTGAGACGAGCTGG+CGG | 0.690140 | 1_1:-53645354 | None:intergenic |
| GTGCATCGAAGAGAATAATG+GGG | 0.693722 | 1_1:+53646829 | Msa0028630:intron |
| TGCATCGAAGAGAATAATGG+GGG | 0.696992 | 1_1:+53646830 | Msa0028630:CDS |
| GGCATTTGAAAATGGCAATG+TGG | 0.697544 | 1_1:+53650987 | Msa0028630:CDS |
| ACACGGGCTACAAGTTACAG+TGG | 0.702157 | 1_1:+53652140 | Msa0028630:CDS |
| GGTGCCACAACAGCTCCTCG+AGG | 0.736173 | 1_1:-53651894 | None:intergenic |
| ATACCTTCGAGTATACAGCA+AGG | 0.747138 | 1_1:-53651611 | None:intergenic |
| AGAAGTATATTACACAACCG+AGG | 0.760627 | 1_1:+53647760 | Msa0028630:CDS |
| GGAATGATACAATACCAGAG+GGG | 0.801078 | 1_1:-53651161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGAATTTAGATTTATTTT+AGG | - | chr1_1:53644987-53645006 | None:intergenic | 10.0% |
| !! | ATAAAATCAATATAATTACT+TGG | - | chr1_1:53647797-53647816 | None:intergenic | 10.0% |
| !!! | ACTTTTAAAAACTAATATTT+AGG | - | chr1_1:53648158-53648177 | None:intergenic | 10.0% |
| !! | ACAATTTATAAATAGTTATA+TGG | + | chr1_1:53648615-53648634 | Msa0028630:intron | 10.0% |
| !!! | TTACTGTTTAAAATTAAATA+AGG | - | chr1_1:53649047-53649066 | None:intergenic | 10.0% |
| !!! | AAAAATTGTGTTTGAAATTA+AGG | + | chr1_1:53645997-53646016 | Msa0028630:intron | 15.0% |
| !!! | AGTAACTTTTAAATTGAAAA+TGG | - | chr1_1:53646049-53646068 | None:intergenic | 15.0% |
| !! | AAATCAAATCTCTAAATATT+AGG | + | chr1_1:53646216-53646235 | Msa0028630:intron | 15.0% |
| !! | TATAACATTAGTAGTATTAA+AGG | + | chr1_1:53646294-53646313 | Msa0028630:intron | 15.0% |
| !! | TAATAACAAACTACTATATT+TGG | - | chr1_1:53646537-53646556 | None:intergenic | 15.0% |
| !!! | TTTCATCTTTTCAAATTATT+CGG | + | chr1_1:53646739-53646758 | Msa0028630:intron | 15.0% |
| !!! | TTAGTTTTTAAAAGTTTTAC+TGG | + | chr1_1:53648163-53648182 | Msa0028630:intron | 15.0% |
| !! | AAATAAATAAATTAGTTGAG+AGG | - | chr1_1:53648582-53648601 | None:intergenic | 15.0% |
| !! | TATTAAAATATTTGAGTATG+AGG | + | chr1_1:53649085-53649104 | Msa0028630:intron | 15.0% |
| !! | AGTTAAGTATATTCTAAATT+TGG | + | chr1_1:53649677-53649696 | Msa0028630:intron | 15.0% |
| !!! | ATCTATTAGGTTTTTATATT+GGG | - | chr1_1:53649830-53649849 | None:intergenic | 15.0% |
| !!! | TATCTATTAGGTTTTTATAT+TGG | - | chr1_1:53649831-53649850 | None:intergenic | 15.0% |
| !! | TATATTATAATTCTATGTTG+TGG | + | chr1_1:53650202-53650221 | Msa0028630:intron | 15.0% |
| !! | ATATTATAATTCTATGTTGT+GGG | + | chr1_1:53650203-53650222 | Msa0028630:intron | 15.0% |
| !!! | TCATTTTATTGATAATTACA+AGG | + | chr1_1:53651014-53651033 | Msa0028630:CDS | 15.0% |
| !!! | AGATAAATTGTCATTTTTAT+CGG | - | chr1_1:53652427-53652446 | None:intergenic | 15.0% |
| !!! | CTAATCATTTTTTTATTCTT+CGG | + | chr1_1:53652492-53652511 | Msa0028630:intron | 15.0% |
| !! | GAAATAACATTAACAAAACA+TGG | + | chr1_1:53645053-53645072 | Msa0028630:exon | 20.0% |
| !! | TTGATTCATTATCATACAAT+TGG | + | chr1_1:53645622-53645641 | Msa0028630:intron | 20.0% |
| !! | ATAGTTAGTTAGTGTAATTT+CGG | + | chr1_1:53645721-53645740 | Msa0028630:intron | 20.0% |
| !!! | TCAAATAAAGTTGATGTATT+TGG | + | chr1_1:53645904-53645923 | Msa0028630:intron | 20.0% |
| !! | TTATACTTTGTAACTAACAA+AGG | + | chr1_1:53645974-53645993 | Msa0028630:intron | 20.0% |
| !! | ACATATGCATTGTTTAATTA+AGG | - | chr1_1:53646081-53646100 | None:intergenic | 20.0% |
| !!! | TATTGCTGATCTTTATTTTT+TGG | + | chr1_1:53646793-53646812 | Msa0028630:intron | 20.0% |
| !!! | TACAAATAGAAATTTTGTCT+TGG | + | chr1_1:53647418-53647437 | Msa0028630:intron | 20.0% |
| !!! | TGTTTGAAATCATAGATATT+TGG | + | chr1_1:53648024-53648043 | Msa0028630:intron | 20.0% |
| !!! | GTTTGAAATCATAGATATTT+GGG | + | chr1_1:53648025-53648044 | Msa0028630:intron | 20.0% |
| !!! | TTTGAAATCATAGATATTTG+GGG | + | chr1_1:53648026-53648045 | Msa0028630:intron | 20.0% |
| !! | ATTGCTTCATTAATCTTTAA+AGG | + | chr1_1:53648328-53648347 | Msa0028630:intron | 20.0% |
| !!! | TATGCTTAAAAGTTTTAACA+AGG | + | chr1_1:53648482-53648501 | Msa0028630:intron | 20.0% |
| !! | TTATTGCTAAAACTCAATAT+GGG | - | chr1_1:53648512-53648531 | None:intergenic | 20.0% |
| !! | ATTATTGCTAAAACTCAATA+TGG | - | chr1_1:53648513-53648532 | None:intergenic | 20.0% |
| !!! | ATAGTTATATGGTATCTTTT+AGG | + | chr1_1:53648626-53648645 | Msa0028630:intron | 20.0% |
| !!! | AGTTCATTAAGCTTTTAATA+TGG | - | chr1_1:53649627-53649646 | None:intergenic | 20.0% |
| !! | AGTATATTCTAAATTTGGTT+AGG | + | chr1_1:53649682-53649701 | Msa0028630:intron | 20.0% |
| !! | TAAAAACCTAATAGATATGA+AGG | + | chr1_1:53649834-53649853 | Msa0028630:intron | 20.0% |
| !! | TAAAAATGACATAAAAGAAC+TGG | + | chr1_1:53650047-53650066 | Msa0028630:intron | 20.0% |
| !!! | ATTCTATATGATCTCATTTT+CGG | - | chr1_1:53650077-53650096 | None:intergenic | 20.0% |
| !! | TTAGCCTAGTAATTAATTTA+CGG | + | chr1_1:53650348-53650367 | Msa0028630:intron | 20.0% |
| !!! | CAGAAAATAGGATAAATTTT+CGG | - | chr1_1:53650379-53650398 | None:intergenic | 20.0% |
| !!! | AGTAAAAAAAGAAAGTATCT+TGG | - | chr1_1:53650423-53650442 | None:intergenic | 20.0% |
| !! | TAACTGAAAATTTACTATCT+TGG | + | chr1_1:53650442-53650461 | Msa0028630:intron | 20.0% |
| !! | AAAAATTACTGTTTCATGTT+AGG | - | chr1_1:53651428-53651447 | None:intergenic | 20.0% |
| !! | AAATGAAGCATATTCATATT+TGG | + | chr1_1:53651772-53651791 | Msa0028630:CDS | 20.0% |
| !! | CATTATTTCAAAGAGAAAAT+AGG | + | chr1_1:53651810-53651829 | Msa0028630:CDS | 20.0% |
| !! | AAAAGAAAGAGTAAAAGATT+AGG | + | chr1_1:53652390-53652409 | Msa0028630:intron | 20.0% |
| !! | GATAAAAATGACAATTTATC+TGG | + | chr1_1:53652426-53652445 | Msa0028630:intron | 20.0% |
| !! | CGAAGAATAAAAAAATGATT+AGG | - | chr1_1:53652494-53652513 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAGATAAACTAAG+TGG | - | chr1_1:53652589-53652608 | None:intergenic | 20.0% |
| !! | TATCTTGAAAAATATAGAGA+AGG | + | chr1_1:53652596-53652615 | Msa0028630:intron | 20.0% |
| !!! | CCATATATCAGTTTAATTTA+CGG | + | chr1_1:53652625-53652644 | Msa0028630:intron | 20.0% |
| !!! | TCTATTCGTTCTTTTTTCTT+TGG | - | chr1_1:53645183-53645202 | None:intergenic | 25.0% |
| ! | AAAATTCTAATAGCAAACAG+AGG | + | chr1_1:53645204-53645223 | Msa0028630:CDS | 25.0% |
| !! | TGAGATTTTCAACTTCAATT+CGG | + | chr1_1:53645438-53645457 | Msa0028630:intron | 25.0% |
| ! | ATTGTGATGATTGATTGATT+AGG | + | chr1_1:53645472-53645491 | Msa0028630:intron | 25.0% |
| !!! | GGATTGATTTTAGTTAAAAG+TGG | + | chr1_1:53645772-53645791 | Msa0028630:intron | 25.0% |
| ! | TTTATGTTTGCGTACATATT+TGG | + | chr1_1:53645795-53645814 | Msa0028630:intron | 25.0% |
| ! | TTATGTTTGCGTACATATTT+GGG | + | chr1_1:53645796-53645815 | Msa0028630:intron | 25.0% |
| ! | AATGAAATTATATTGACACC+AGG | - | chr1_1:53646625-53646644 | None:intergenic | 25.0% |
| ! | TGTATATTATATCTCTTCCA+TGG | + | chr1_1:53646655-53646674 | Msa0028630:intron | 25.0% |
| ! | ATCTGACATCGATATATATA+TGG | + | chr1_1:53646707-53646726 | Msa0028630:intron | 25.0% |
| ! | AGATATTGATAAAATGAAGC+TGG | + | chr1_1:53646896-53646915 | Msa0028630:CDS | 25.0% |
| ! | ATTTAGTCCAATTCATTGTA+GGG | + | chr1_1:53647157-53647176 | Msa0028630:intron | 25.0% |
| ! | AGTATCATTATTGTAATGTG+TGG | + | chr1_1:53647284-53647303 | Msa0028630:intron | 25.0% |
| !! | AGAATTGCACATTTCTTTTA+TGG | + | chr1_1:53647354-53647373 | Msa0028630:intron | 25.0% |
| !! | GAATTGCACATTTCTTTTAT+GGG | + | chr1_1:53647355-53647374 | Msa0028630:intron | 25.0% |
| !! | TCTGTTTTCACAATAAAAGA+AGG | - | chr1_1:53647552-53647571 | None:intergenic | 25.0% |
| ! | TTGTACAATGTGAATAATGT+AGG | + | chr1_1:53647638-53647657 | Msa0028630:intron | 25.0% |
| ! | TGTACAATGTGAATAATGTA+GGG | + | chr1_1:53647639-53647658 | Msa0028630:intron | 25.0% |
| !!! | AATGGATATTTTTGTGTTGA+TGG | - | chr1_1:53647964-53647983 | None:intergenic | 25.0% |
| ! | ACAAAAATATCCATTTGTCT+TGG | + | chr1_1:53647969-53647988 | Msa0028630:intron | 25.0% |
| !!! | GAGCTTCTTCAATTATTTTT+TGG | - | chr1_1:53648110-53648129 | None:intergenic | 25.0% |
| ! | AAAAACTAATATTTAGGCTG+TGG | - | chr1_1:53648152-53648171 | None:intergenic | 25.0% |
| ! | ATTAATGAAGCAATTACAAG+TGG | - | chr1_1:53648322-53648341 | None:intergenic | 25.0% |
| ! | AGCAAAAGGAAAATGATTAA+AGG | - | chr1_1:53649119-53649138 | None:intergenic | 25.0% |
| ! | CAATCACAAATACCAATATT+AGG | + | chr1_1:53649486-53649505 | Msa0028630:CDS | 25.0% |
| ! | AAAACTGAATCACCTAATAT+TGG | - | chr1_1:53649501-53649520 | None:intergenic | 25.0% |
| ! | TGATAAGAGTTTATAAAGAG+TGG | + | chr1_1:53649762-53649781 | Msa0028630:intron | 25.0% |
| !! | TTTTCTCCTTCATATCTATT+AGG | - | chr1_1:53649843-53649862 | None:intergenic | 25.0% |
| !! | AACAAAATTTTCTGTGTTAG+TGG | + | chr1_1:53649884-53649903 | Msa0028630:intron | 25.0% |
| !! | ACAAAATTTTCTGTGTTAGT+GGG | + | chr1_1:53649885-53649904 | Msa0028630:intron | 25.0% |
| !! | TGAAGTATTTGTCAAAATTC+AGG | - | chr1_1:53649941-53649960 | None:intergenic | 25.0% |
| !!! | ATTTTGACAAATACTTCACT+TGG | + | chr1_1:53649943-53649962 | Msa0028630:intron | 25.0% |
| !! | TTTTGACAAATACTTCACTT+GGG | + | chr1_1:53649944-53649963 | Msa0028630:intron | 25.0% |
| ! | TAGTATTTATGACTAATTGC+TGG | + | chr1_1:53649990-53650009 | Msa0028630:intron | 25.0% |
| !!! | CATTTTTAAGTAAGTTTCAG+AGG | - | chr1_1:53650035-53650054 | None:intergenic | 25.0% |
| ! | ATAGATAAACTTCAAAGCAT+AGG | - | chr1_1:53650185-53650204 | None:intergenic | 25.0% |
| ! | TTGACCGTAAATTAATTACT+AGG | - | chr1_1:53650355-53650374 | None:intergenic | 25.0% |
| !! | AGGATAGTTTGACAAATTTT+CGG | + | chr1_1:53650582-53650601 | Msa0028630:CDS | 25.0% |
| ! | CTTGAATTTCTTTCTTCTAT+GGG | - | chr1_1:53650827-53650846 | None:intergenic | 25.0% |
| ! | ACTTGAATTTCTTTCTTCTA+TGG | - | chr1_1:53650828-53650847 | None:intergenic | 25.0% |
| ! | ATATATTAGAAGTTTACGCA+TGG | - | chr1_1:53650904-53650923 | None:intergenic | 25.0% |
| !! | ATTTGTTGCACAATAAAATG+TGG | - | chr1_1:53651453-53651472 | None:intergenic | 25.0% |
| !!! | CTCTTTGAAATAATGATGAA+AGG | - | chr1_1:53651805-53651824 | None:intergenic | 25.0% |
| ! | ATGTTGTAAATTTCTCTCTT+TGG | + | chr1_1:53652028-53652047 | Msa0028630:intron | 25.0% |
| !! | GTGTCTTTGTTTATCTATTT+AGG | + | chr1_1:53652050-53652069 | Msa0028630:intron | 25.0% |
| !! | TCTTTGTTTATCTATTTAGG+AGG | + | chr1_1:53652053-53652072 | Msa0028630:intron | 25.0% |
| ! | AAGTTGAAATTATACAACTC+AGG | + | chr1_1:53652544-53652563 | Msa0028630:intron | 25.0% |
| ! | CCGTAAATTAAACTGATATA+TGG | - | chr1_1:53652628-53652647 | None:intergenic | 25.0% |
| ! | ATAAGCTGAAATACTTTGTT+AGG | + | chr1_1:53652657-53652676 | Msa0028630:intron | 25.0% |
| ! | TTATAATTTCGAACTCTAAC+AGG | + | chr1_1:53652768-53652787 | Msa0028630:intron | 25.0% |
| ! | TATAATTTCGAACTCTAACA+GGG | + | chr1_1:53652769-53652788 | Msa0028630:intron | 25.0% |
| ! | CAGGATCAATAAAATTATAC+AGG | + | chr1_1:53652901-53652920 | Msa0028630:intron | 25.0% |
| CTCAACTTTGTGAAGATAAT+GGG | + | chr1_1:53645540-53645559 | Msa0028630:CDS | 30.0% | |
| !!! | GATAATGGGATTGCTTTTAT+TGG | + | chr1_1:53645554-53645573 | Msa0028630:CDS | 30.0% |
| TTAGTGTAATTTCGGTTATG+TGG | + | chr1_1:53645729-53645748 | Msa0028630:intron | 30.0% | |
| ! | GTGACAAGAAATGATTTTGT+AGG | + | chr1_1:53645751-53645770 | Msa0028630:intron | 30.0% |
| !!! | GTGGATCTAGTAAGTTTTTT+GGG | + | chr1_1:53646259-53646278 | Msa0028630:intron | 30.0% |
| !!! | TGGATCTAGTAAGTTTTTTG+GGG | + | chr1_1:53646260-53646279 | Msa0028630:intron | 30.0% |
| GGAAAATCTTATTCTCTTGT+CGG | + | chr1_1:53646315-53646334 | Msa0028630:intron | 30.0% | |
| GAAAATCTTATTCTCTTGTC+GGG | + | chr1_1:53646316-53646335 | Msa0028630:intron | 30.0% | |
| AAAATCTTATTCTCTTGTCG+GGG | + | chr1_1:53646317-53646336 | Msa0028630:intron | 30.0% | |
| ! | TTTGAGTGTACAATCACTTT+TGG | + | chr1_1:53646391-53646410 | Msa0028630:intron | 30.0% |
| ! | ATCGATTCTAACTTGAATCT+AGG | - | chr1_1:53646434-53646453 | None:intergenic | 30.0% |
| !! | AATCGATTTTGACACTTGTT+TGG | - | chr1_1:53646490-53646509 | None:intergenic | 30.0% |
| !! | ACTATATTTGGTTCCACTTT+TGG | - | chr1_1:53646525-53646544 | None:intergenic | 30.0% |
| ACTAAAATTGATAGAAGCCA+TGG | - | chr1_1:53646675-53646694 | None:intergenic | 30.0% | |
| !!! | ATCAATTTTAGTTACGTGTC+TGG | + | chr1_1:53646683-53646702 | Msa0028630:intron | 30.0% |
| ! | CATCTTTTCAAATTATTCGG+AGG | + | chr1_1:53646742-53646761 | Msa0028630:intron | 30.0% |
| TATTGATAAAATGAAGCTGG+AGG | + | chr1_1:53646899-53646918 | Msa0028630:CDS | 30.0% | |
| TGAATCAAAGGATCATGAAA+GGG | - | chr1_1:53647013-53647032 | None:intergenic | 30.0% | |
| TTGAATCAAAGGATCATGAA+AGG | - | chr1_1:53647014-53647033 | None:intergenic | 30.0% | |
| ACTATGATAATCATTCATCC+AGG | - | chr1_1:53647081-53647100 | None:intergenic | 30.0% | |
| ! | TAGTACTGAAAGAATGTGTT+TGG | + | chr1_1:53647097-53647116 | Msa0028630:intron | 30.0% |
| ! | AGTACTGAAAGAATGTGTTT+GGG | + | chr1_1:53647098-53647117 | Msa0028630:intron | 30.0% |
| ! | AGGCAAAGAATTTTCCAAAA+TGG | - | chr1_1:53647132-53647151 | None:intergenic | 30.0% |
| CATTTAGTCCAATTCATTGT+AGG | + | chr1_1:53647156-53647175 | Msa0028630:intron | 30.0% | |
| ATGAATGAAGACAGGATATA+AGG | - | chr1_1:53647248-53647267 | None:intergenic | 30.0% | |
| TATATCCTGTCTTCATTCAT+TGG | + | chr1_1:53647248-53647267 | Msa0028630:intron | 30.0% | |
| TATAACCAATGAATGAAGAC+AGG | - | chr1_1:53647256-53647275 | None:intergenic | 30.0% | |
| ! | TTTTCAACTCTCAAACATGT+AGG | - | chr1_1:53647325-53647344 | None:intergenic | 30.0% |
| AATGATTCAGCAAATTCATC+TGG | - | chr1_1:53647684-53647703 | None:intergenic | 30.0% | |
| ! | TAAGGTCGTTTAGTTTCAAA+AGG | + | chr1_1:53648277-53648296 | Msa0028630:intron | 30.0% |
| ! | TTTAAAGGATCTGAAGTTGT+TGG | + | chr1_1:53648343-53648362 | Msa0028630:intron | 30.0% |
| TTTGCTTACTTCAGAAATAC+AGG | - | chr1_1:53648653-53648672 | None:intergenic | 30.0% | |
| ATCAGAAGTAATGACTACAA+GGG | - | chr1_1:53648832-53648851 | None:intergenic | 30.0% | |
| AATCAGAAGTAATGACTACA+AGG | - | chr1_1:53648833-53648852 | None:intergenic | 30.0% | |
| TGTAGTCATTACTTCTGATT+TGG | + | chr1_1:53648833-53648852 | Msa0028630:intron | 30.0% | |
| TTGGTTTCATTCAGTCATTT+CGG | + | chr1_1:53648852-53648871 | Msa0028630:intron | 30.0% | |
| ! | TGCCATATTAACTGATTCTT+TGG | + | chr1_1:53648907-53648926 | Msa0028630:intron | 30.0% |
| TGCCAAAGAATCAGTTAATA+TGG | - | chr1_1:53648912-53648931 | None:intergenic | 30.0% | |
| AAATATTTGAGTATGAGGTG+CGG | + | chr1_1:53649090-53649109 | Msa0028630:intron | 30.0% | |
| ! | GATTTCTTGTTTCTTTCTGA+TGG | + | chr1_1:53649194-53649213 | Msa0028630:intron | 30.0% |
| CAGTTAACTATTACAATGCT+GGG | + | chr1_1:53649224-53649243 | Msa0028630:CDS | 30.0% | |
| ! | TTTATAGTTGATACAGTCTC+TGG | + | chr1_1:53649256-53649275 | Msa0028630:CDS | 30.0% |
| TCATCTCCATAAAGTAAAAC+TGG | - | chr1_1:53649282-53649301 | None:intergenic | 30.0% | |
| !! | GTCATTTTGTCCTAGAATTT+TGG | + | chr1_1:53649337-53649356 | Msa0028630:intron | 30.0% |
| ! | ATCTTTTCTATGTGAGACTT+GGG | - | chr1_1:53649734-53649753 | None:intergenic | 30.0% |
| ! | TATCTTTTCTATGTGAGACT+TGG | - | chr1_1:53649735-53649754 | None:intergenic | 30.0% |
| AAGTCTCACATAGAAAAGAT+AGG | + | chr1_1:53649734-53649753 | Msa0028630:intron | 30.0% | |
| ! | CAAAATTTTCTGTGTTAGTG+GGG | + | chr1_1:53649886-53649905 | Msa0028630:intron | 30.0% |
| TTTGACAAATACTTCACTTG+GGG | + | chr1_1:53649945-53649964 | Msa0028630:intron | 30.0% | |
| TATGCTGAAAATGTTCCAAA+AGG | + | chr1_1:53650254-53650273 | Msa0028630:CDS | 30.0% | |
| ! | TTTATCCTATTTTCTGCTGT+TGG | + | chr1_1:53650383-53650402 | Msa0028630:intron | 30.0% |
| ! | GGATAGTTTGACAAATTTTC+GGG | + | chr1_1:53650583-53650602 | Msa0028630:CDS | 30.0% |
| !! | TTTTGTGTTGATCATGCTAT+AGG | + | chr1_1:53650617-53650636 | Msa0028630:intron | 30.0% |
| TGTAATCATGATTATGAGTG+AGG | + | chr1_1:53650648-53650667 | Msa0028630:intron | 30.0% | |
| !! | TCCCTGTATTTGTTATCTTT+GGG | + | chr1_1:53650732-53650751 | Msa0028630:intron | 30.0% |
| TACTAGGTATGTAAGAAAGT+TGG | + | chr1_1:53650785-53650804 | Msa0028630:intron | 30.0% | |
| ACTAGGTATGTAAGAAAGTT+GGG | + | chr1_1:53650786-53650805 | Msa0028630:intron | 30.0% | |
| CTTCTAATATATTCTTGCAC+AGG | + | chr1_1:53650912-53650931 | Msa0028630:intron | 30.0% | |
| AGAAGAAAGTTGACATTAGT+TGG | - | chr1_1:53650949-53650968 | None:intergenic | 30.0% | |
| AACTCAGAACATTAAACAAC+AGG | - | chr1_1:53651185-53651204 | None:intergenic | 30.0% | |
| !! | TGTTTTTGTTTGCTTTTCCT+TGG | + | chr1_1:53651204-53651223 | Msa0028630:intron | 30.0% |
| CTCAAATAGTTGACTAAAGA+TGG | + | chr1_1:53651474-53651493 | Msa0028630:intron | 30.0% | |
| TACTTCCAGACAAATGAAAA+TGG | + | chr1_1:53651504-53651523 | Msa0028630:intron | 30.0% | |
| !!! | GATTTTAGAGTTAAAGCTGA+TGG | + | chr1_1:53651570-53651589 | Msa0028630:CDS | 30.0% |
| AAAATCATCTATGCAAAGGA+AGG | - | chr1_1:53651641-53651660 | None:intergenic | 30.0% | |
| ! | TTCCTTTGCATAGATGATTT+TGG | + | chr1_1:53651640-53651659 | Msa0028630:intron | 30.0% |
| TTCCAAAATCATCTATGCAA+AGG | - | chr1_1:53651645-53651664 | None:intergenic | 30.0% | |
| GTTTGACAAGAAAGAGAATT+CGG | - | chr1_1:53651703-53651722 | None:intergenic | 30.0% | |
| AAGCATATTCATATTTGGCA+AGG | + | chr1_1:53651777-53651796 | Msa0028630:CDS | 30.0% | |
| AGCATATTCATATTTGGCAA+GGG | + | chr1_1:53651778-53651797 | Msa0028630:CDS | 30.0% | |
| GAGAAAAAGCAAAACAATGT+TGG | - | chr1_1:53652085-53652104 | None:intergenic | 30.0% | |
| ! | TTTTCTCTAGCATGTTGTAA+AGG | + | chr1_1:53652098-53652117 | Msa0028630:intron | 30.0% |
| TAGTGTTCTCTTCAATGTAA+AGG | + | chr1_1:53652182-53652201 | Msa0028630:CDS | 30.0% | |
| ! | ACCTTTTCTATTCTTCACAT+TGG | + | chr1_1:53652215-53652234 | Msa0028630:intron | 30.0% |
| ACCAATGTGAAGAATAGAAA+AGG | - | chr1_1:53652219-53652238 | None:intergenic | 30.0% | |
| TACTTCACTATATCAATGCA+TGG | + | chr1_1:53652274-53652293 | Msa0028630:intron | 30.0% | |
| ACTGTATCCAATAAACACAT+TGG | + | chr1_1:53652682-53652701 | Msa0028630:intron | 30.0% | |
| AAGATGACCAATGTGTTTAT+TGG | - | chr1_1:53652692-53652711 | None:intergenic | 30.0% | |
| ATTGATTAGGCTATTCATCC+TGG | + | chr1_1:53645485-53645504 | Msa0028630:intron | 35.0% | |
| ! | TCCTGGATATGGATTTTTGT+CGG | + | chr1_1:53645502-53645521 | Msa0028630:CDS | 35.0% |
| GCTCAACTTTGTGAAGATAA+TGG | + | chr1_1:53645539-53645558 | Msa0028630:CDS | 35.0% | |
| GTTCCAAAAACTTCCTTTGA+CGG | + | chr1_1:53645821-53645840 | Msa0028630:intron | 35.0% | |
| TTCCAAAAACTTCCTTTGAC+GGG | + | chr1_1:53645822-53645841 | Msa0028630:intron | 35.0% | |
| ! | TATTTTCTAAACCCCGTCAA+AGG | - | chr1_1:53645837-53645856 | None:intergenic | 35.0% |
| GGAGTGAGATAAGTATAAGT+TGG | + | chr1_1:53646237-53646256 | Msa0028630:intron | 35.0% | |
| ! | GTGAGATAAGTATAAGTTGG+TGG | + | chr1_1:53646240-53646259 | Msa0028630:intron | 35.0% |
| !!! | GGTGGATCTAGTAAGTTTTT+TGG | + | chr1_1:53646258-53646277 | Msa0028630:intron | 35.0% |
| !!! | GGATCTAGTAAGTTTTTTGG+GGG | + | chr1_1:53646261-53646280 | Msa0028630:intron | 35.0% |
| TTCGACTGATATGTATCAAG+TGG | - | chr1_1:53646364-53646383 | None:intergenic | 35.0% | |
| ! | CAAGTTAGAATCGATTCTGA+AGG | + | chr1_1:53646439-53646458 | Msa0028630:intron | 35.0% |
| !! | ATATTTGGTTCCACTTTTGG+AGG | - | chr1_1:53646522-53646541 | None:intergenic | 35.0% |
| CTGAAGTAAAAACACTTTCC+TGG | + | chr1_1:53646604-53646623 | Msa0028630:intron | 35.0% | |
| AGTGCATCGAAGAGAATAAT+GGG | + | chr1_1:53646828-53646847 | Msa0028630:intron | 35.0% | |
| AAGTATATGAAGGTAGCACT+AGG | - | chr1_1:53646987-53647006 | None:intergenic | 35.0% | |
| GTAGCACATCTTTGAATCAA+AGG | - | chr1_1:53647025-53647044 | None:intergenic | 35.0% | |
| TGAATTGGACTAAATGCACA+AGG | - | chr1_1:53647152-53647171 | None:intergenic | 35.0% | |
| CAAGAAGAGAACATAGAACA+AGG | - | chr1_1:53647188-53647207 | None:intergenic | 35.0% | |
| CTTGTTCTATGTTCTCTTCT+TGG | + | chr1_1:53647186-53647205 | Msa0028630:intron | 35.0% | |
| !! | TTCTTGGATTGCTGATTTCA+TGG | + | chr1_1:53647202-53647221 | Msa0028630:intron | 35.0% |
| ! | TAATGTGTGGCTACACTTTT+AGG | + | chr1_1:53647297-53647316 | Msa0028630:intron | 35.0% |
| GAAAATTCTTGTTGCTCATG+AGG | + | chr1_1:53647591-53647610 | Msa0028630:intron | 35.0% | |
| TGTGAATAATGTAGGGTATG+AGG | + | chr1_1:53647646-53647665 | Msa0028630:intron | 35.0% | |
| ! | AGAAGTATATTACACAACCG+AGG | + | chr1_1:53647760-53647779 | Msa0028630:CDS | 35.0% |
| AATGAAGCTTCTTGGAGAAA+CGG | - | chr1_1:53647834-53647853 | None:intergenic | 35.0% | |
| AAGAACTGAAAAAAAGTCCC+TGG | - | chr1_1:53647905-53647924 | None:intergenic | 35.0% | |
| TCAGTTCTTCAGAACTTAAC+AGG | + | chr1_1:53647916-53647935 | Msa0028630:intron | 35.0% | |
| TCAGAACTTAACAGGAACAA+TGG | + | chr1_1:53647924-53647943 | Msa0028630:intron | 35.0% | |
| TAGATATTTGGGGATAAGCA+TGG | + | chr1_1:53648036-53648055 | Msa0028630:intron | 35.0% | |
| AGATATTTGGGGATAAGCAT+GGG | + | chr1_1:53648037-53648056 | Msa0028630:intron | 35.0% | |
| ! | CGAAACTCAGGAGAAATTTT+TGG | - | chr1_1:53648219-53648238 | None:intergenic | 35.0% |
| AGATAAGTTGTCTTCATGAC+TGG | + | chr1_1:53648398-53648417 | Msa0028630:intron | 35.0% | |
| ! | AAGAAAAGTGTGACGAAGAA+AGG | + | chr1_1:53648713-53648732 | Msa0028630:intron | 35.0% |
| GAAGTTATGAGACAAGCAAA+AGG | - | chr1_1:53649133-53649152 | None:intergenic | 35.0% | |
| GCAGTTAACTATTACAATGC+TGG | + | chr1_1:53649223-53649242 | Msa0028630:CDS | 35.0% | |
| TTGGTCAAGATCTTGTTGAA+TGG | + | chr1_1:53649424-53649443 | Msa0028630:CDS | 35.0% | |
| ! | TTTTCCCGTCTCTTTTCTTT+TGG | + | chr1_1:53649518-53649537 | Msa0028630:intron | 35.0% |
| TGTTTATTTAGTGTGGGTGA+GGG | + | chr1_1:53649575-53649594 | Msa0028630:intron | 35.0% | |
| AGGTTCTCTTGAGATACTAT+TGG | + | chr1_1:53649702-53649721 | Msa0028630:intron | 35.0% | |
| GGTTCTCTTGAGATACTATT+GGG | + | chr1_1:53649703-53649722 | Msa0028630:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr1_1:53649806-53649825 | None:intergenic | 35.0% | |
| TTCTTCCAACAGCAGAAAAT+AGG | - | chr1_1:53650391-53650410 | None:intergenic | 35.0% | |
| AATTTACTATCTTGGCAGTC+CGG | + | chr1_1:53650450-53650469 | Msa0028630:intron | 35.0% | |
| ACTACAAGCTTAGCAATCAT+TGG | - | chr1_1:53650524-53650543 | None:intergenic | 35.0% | |
| !! | GTCCCTGTATTTGTTATCTT+TGG | + | chr1_1:53650731-53650750 | Msa0028630:intron | 35.0% |
| CCCCAAAGATAACAAATACA+GGG | - | chr1_1:53650736-53650755 | None:intergenic | 35.0% | |
| !! | CCCTGTATTTGTTATCTTTG+GGG | + | chr1_1:53650733-53650752 | Msa0028630:intron | 35.0% |
| TTTCTTTCTTCTATGGGAAC+TGG | - | chr1_1:53650821-53650840 | None:intergenic | 35.0% | |
| ! | GGAGCATGATTTCTAAAAGA+TGG | - | chr1_1:53650883-53650902 | None:intergenic | 35.0% |
| AATCACTGGGCATTTGAAAA+TGG | + | chr1_1:53650979-53650998 | Msa0028630:CDS | 35.0% | |
| TTACAAGGAAGATCTCTTTG+TGG | + | chr1_1:53651029-53651048 | Msa0028630:CDS | 35.0% | |
| AGGAATGATACAATACCAGA+GGG | - | chr1_1:53651165-53651184 | None:intergenic | 35.0% | |
| GCGACGAATTATACCATATA+GGG | - | chr1_1:53651271-53651290 | None:intergenic | 35.0% | |
| TGGGATAATGAGTATGATAG+TGG | + | chr1_1:53651335-53651354 | Msa0028630:CDS | 35.0% | |
| ! | GACTTCCATTTTCATTTGTC+TGG | - | chr1_1:53651512-53651531 | None:intergenic | 35.0% |
| ACAAATGAAAATGGAAGTCC+TGG | + | chr1_1:53651513-53651532 | Msa0028630:CDS | 35.0% | |
| AAGTCCTGGTTTAGAAGTTA+AGG | + | chr1_1:53651527-53651546 | Msa0028630:CDS | 35.0% | |
| TTCGGATTGTGGTTTATGTT+GGG | - | chr1_1:53651862-53651881 | None:intergenic | 35.0% | |
| ATTCGGATTGTGGTTTATGT+TGG | - | chr1_1:53651863-53651882 | None:intergenic | 35.0% | |
| ATCGCTTCTAATACTAACAC+GGG | - | chr1_1:53651981-53652000 | None:intergenic | 35.0% | |
| CATCGCTTCTAATACTAACA+CGG | - | chr1_1:53651982-53652001 | None:intergenic | 35.0% | |
| AGTATTAGAAGCGATGAAGA+TGG | + | chr1_1:53651986-53652005 | Msa0028630:CDS | 35.0% | |
| TCTATTCTTCACATTGGTCA+TGG | + | chr1_1:53652221-53652240 | Msa0028630:intron | 35.0% | |
| !!! | TGTCATTTTTATCGGCACTT+TGG | - | chr1_1:53652419-53652438 | None:intergenic | 35.0% |
| !! | AGGAGTATTATGTGAATGAG+CGG | - | chr1_1:53652474-53652493 | None:intergenic | 35.0% |
| ACACGTATTAGACATGAACA+CGG | - | chr1_1:53652744-53652763 | None:intergenic | 35.0% | |
| ACCATATTGAGAGTTGTGTT+TGG | + | chr1_1:53652877-53652896 | Msa0028630:intron | 35.0% | |
| CCATATTGAGAGTTGTGTTT+GGG | + | chr1_1:53652878-53652897 | Msa0028630:intron | 35.0% | |
| ! | TTATACAGGAGTACAACTTC+AGG | + | chr1_1:53652915-53652934 | Msa0028630:intron | 35.0% |
| TCAACAAGTAATCAATCTGC+AGG | - | chr1_1:53653051-53653070 | None:intergenic | 35.0% | |
| CATTTCGACGGAATAGTAAG+AGG | - | chr1_1:53645086-53645105 | None:intergenic | 40.0% | |
| !!! | TGTGAGGTTGGTTTTGATCT+TGG | - | chr1_1:53645115-53645134 | None:intergenic | 40.0% |
| CAAGAATGGAAGAAGAGTTG+AGG | - | chr1_1:53645377-53645396 | None:intergenic | 40.0% | |
| TAGGCTATTCATCCTGGATA+TGG | + | chr1_1:53645491-53645510 | Msa0028630:intron | 40.0% | |
| TCCGACAAAAATCCATATCC+AGG | - | chr1_1:53645506-53645525 | None:intergenic | 40.0% | |
| TGTTTGCGTACATATTTGGG+TGG | + | chr1_1:53645799-53645818 | Msa0028630:intron | 40.0% | |
| TCCAAAAACTTCCTTTGACG+GGG | + | chr1_1:53645823-53645842 | Msa0028630:intron | 40.0% | |
| GACTGATATGTATCAAGTGG+CGG | - | chr1_1:53646361-53646380 | None:intergenic | 40.0% | |
| CAGTGCATCGAAGAGAATAA+TGG | + | chr1_1:53646827-53646846 | Msa0028630:intron | 40.0% | |
| GTGCATCGAAGAGAATAATG+GGG | + | chr1_1:53646829-53646848 | Msa0028630:intron | 40.0% | |
| TGCATCGAAGAGAATAATGG+GGG | + | chr1_1:53646830-53646849 | Msa0028630:CDS | 40.0% | |
| TGTTCATCTCCATGATATCC+AGG | - | chr1_1:53646876-53646895 | None:intergenic | 40.0% | |
| TGATAAAATGAAGCTGGAGG+CGG | + | chr1_1:53646902-53646921 | Msa0028630:CDS | 40.0% | |
| GAAAGGGAGCAAGTATATGA+AGG | - | chr1_1:53646997-53647016 | None:intergenic | 40.0% | |
| ACTCAATTTACTCTCTGACC+TGG | + | chr1_1:53647060-53647079 | Msa0028630:intron | 40.0% | |
| ACTGAAAGAATGTGTTTGGG+CGG | + | chr1_1:53647101-53647120 | Msa0028630:intron | 40.0% | |
| GGTGAAACCCTACAATGAAT+TGG | - | chr1_1:53647167-53647186 | None:intergenic | 40.0% | |
| GTTTCTCCAAGAAGCTTCAT+TGG | + | chr1_1:53647833-53647852 | Msa0028630:intron | 40.0% | |
| AGTGTCTCATACTATAGTCC+AGG | + | chr1_1:53647884-53647903 | Msa0028630:intron | 40.0% | |
| GTGTCTCATACTATAGTCCA+GGG | + | chr1_1:53647885-53647904 | Msa0028630:intron | 40.0% | |
| TGGAATGTAAGTCTTACTGC+TGG | - | chr1_1:53648132-53648151 | None:intergenic | 40.0% | |
| ! | AAAAGTGTGACGAAGAAAGG+AGG | + | chr1_1:53648716-53648735 | Msa0028630:intron | 40.0% |
| AGAGGGAGAACTACCTAATT+TGG | + | chr1_1:53648759-53648778 | Msa0028630:intron | 40.0% | |
| TCTGTCACACAGTCCAAATT+AGG | - | chr1_1:53648775-53648794 | None:intergenic | 40.0% | |
| TAATTTGGACTGTGTGACAG+AGG | + | chr1_1:53648774-53648793 | Msa0028630:intron | 40.0% | |
| !!! | GTCATTTCGGTGCTACTTTT+AGG | + | chr1_1:53648865-53648884 | Msa0028630:intron | 40.0% |
| ! | GGCAGTTTTACGACATTGTT+TGG | + | chr1_1:53648928-53648947 | Msa0028630:intron | 40.0% |
| ! | TTGTTGTTGAGCATCAGGTA+TGG | + | chr1_1:53648980-53648999 | Msa0028630:intron | 40.0% |
| GCTTGTCTCATAACTTCATG+TGG | + | chr1_1:53649136-53649155 | Msa0028630:intron | 40.0% | |
| TGTTTCTTTCTGATGGCTGA+AGG | + | chr1_1:53649201-53649220 | Msa0028630:intron | 40.0% | |
| ! | CTCTGGCCAGTTTTACTTTA+TGG | + | chr1_1:53649273-53649292 | Msa0028630:CDS | 40.0% |
| CTCAGGTAAGCCAAAATTCT+AGG | - | chr1_1:53649350-53649369 | None:intergenic | 40.0% | |
| TGGCTTACCTGAGTATAACA+TGG | + | chr1_1:53649357-53649376 | Msa0028630:intron | 40.0% | |
| GGCTTACCTGAGTATAACAT+GGG | + | chr1_1:53649358-53649377 | Msa0028630:intron | 40.0% | |
| GCTTACCTGAGTATAACATG+GGG | + | chr1_1:53649359-53649378 | Msa0028630:intron | 40.0% | |
| CTTACCTGAGTATAACATGG+GGG | + | chr1_1:53649360-53649379 | Msa0028630:intron | 40.0% | |
| TGGCAAATACATGTTGCGAA+TGG | + | chr1_1:53649444-53649463 | Msa0028630:CDS | 40.0% | |
| ! | GGTATTTGTGATTGACTCAG+TGG | - | chr1_1:53649480-53649499 | None:intergenic | 40.0% |
| ACCACCAAAAGAAAAGAGAC+GGG | - | chr1_1:53649525-53649544 | None:intergenic | 40.0% | |
| CACCACCAAAAGAAAAGAGA+CGG | - | chr1_1:53649526-53649545 | None:intergenic | 40.0% | |
| !! | GTCTCTTTTCTTTTGGTGGT+GGG | + | chr1_1:53649525-53649544 | Msa0028630:intron | 40.0% |
| AAATAAACAGGAGGGGAACT+AGG | - | chr1_1:53649564-53649583 | None:intergenic | 40.0% | |
| CCACACTAAATAAACAGGAG+GGG | - | chr1_1:53649571-53649590 | None:intergenic | 40.0% | |
| CCCACACTAAATAAACAGGA+GGG | - | chr1_1:53649572-53649591 | None:intergenic | 40.0% | |
| CCCTCCTGTTTATTTAGTGT+GGG | + | chr1_1:53649569-53649588 | Msa0028630:intron | 40.0% | |
| ACCCACACTAAATAAACAGG+AGG | - | chr1_1:53649573-53649592 | None:intergenic | 40.0% | |
| CTCACCCACACTAAATAAAC+AGG | - | chr1_1:53649576-53649595 | None:intergenic | 40.0% | |
| CTGTTTATTTAGTGTGGGTG+AGG | + | chr1_1:53649574-53649593 | Msa0028630:intron | 40.0% | |
| TTGACAGTTCTACAGATCTG+TGG | + | chr1_1:53649651-53649670 | Msa0028630:intron | 40.0% | |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr1_1:53649804-53649823 | Msa0028630:intron | 40.0% |
| TAATTCTATGTTGTGGGAGC+AGG | + | chr1_1:53650209-53650228 | Msa0028630:intron | 40.0% | |
| ! | GTTGCTGGAAGAAATCCTTT+TGG | - | chr1_1:53650272-53650291 | None:intergenic | 40.0% |
| AAAGGATTTCTTCCAGCAAC+TGG | + | chr1_1:53650272-53650291 | Msa0028630:CDS | 40.0% | |
| ATGAGACTGGAACGTGATAA+TGG | - | chr1_1:53650307-53650326 | None:intergenic | 40.0% | |
| ATTTACTATCTTGGCAGTCC+GGG | + | chr1_1:53650451-53650470 | Msa0028630:intron | 40.0% | |
| ATTGCTAAGCTTGTAGTGCA+GGG | + | chr1_1:53650527-53650546 | Msa0028630:CDS | 40.0% | |
| GCCCCAAAGATAACAAATAC+AGG | - | chr1_1:53650737-53650756 | None:intergenic | 40.0% | |
| !! | ATTTGTTATCTTTGGGGCCA+AGG | + | chr1_1:53650739-53650758 | Msa0028630:intron | 40.0% |
| !! | TTTGTTATCTTTGGGGCCAA+GGG | + | chr1_1:53650740-53650759 | Msa0028630:intron | 40.0% |
| ATGTAGGGTGGAATAGTACT+AGG | + | chr1_1:53650769-53650788 | Msa0028630:intron | 40.0% | |
| TTTCTTCTATGGGAACTGGT+TGG | - | chr1_1:53650817-53650836 | None:intergenic | 40.0% | |
| TATATTCTTGCACAGGTTGC+AGG | + | chr1_1:53650919-53650938 | Msa0028630:intron | 40.0% | |
| !! | TTCTAAAGCTCGCTAATCAC+TGG | + | chr1_1:53650965-53650984 | Msa0028630:CDS | 40.0% |
| ! | TCTAAAGCTCGCTAATCACT+GGG | + | chr1_1:53650966-53650985 | Msa0028630:CDS | 40.0% |
| GGCATTTGAAAATGGCAATG+TGG | + | chr1_1:53650987-53651006 | Msa0028630:CDS | 40.0% | |
| AGCAGCTTCATATGCTTCTT+TGG | - | chr1_1:53651076-53651095 | None:intergenic | 40.0% | |
| ! | AAGAAGCATATGAAGCTGCT+AGG | + | chr1_1:53651076-53651095 | Msa0028630:CDS | 40.0% |
| AATGAGACATGCAGCTACAA+GGG | - | chr1_1:53651112-53651131 | None:intergenic | 40.0% | |
| GGAATGATACAATACCAGAG+GGG | - | chr1_1:53651164-53651183 | None:intergenic | 40.0% | |
| CAGGAATGATACAATACCAG+AGG | - | chr1_1:53651166-53651185 | None:intergenic | 40.0% | |
| AGTGGCAGATGTAAATACCA+AGG | - | chr1_1:53651224-53651243 | None:intergenic | 40.0% | |
| TTACATCTGCCACTATGTTC+AGG | + | chr1_1:53651230-53651249 | Msa0028630:intron | 40.0% | |
| GGCGACGAATTATACCATAT+AGG | - | chr1_1:53651272-53651291 | None:intergenic | 40.0% | |
| CTCAAGTTCTATTGTACGCT+TGG | - | chr1_1:53651315-53651334 | None:intergenic | 40.0% | |
| AGCGTACAATAGAACTTGAG+TGG | + | chr1_1:53651315-53651334 | Msa0028630:CDS | 40.0% | |
| GCGTACAATAGAACTTGAGT+GGG | + | chr1_1:53651316-53651335 | Msa0028630:CDS | 40.0% | |
| TGTTAGGAGATACCTCAATC+AGG | - | chr1_1:53651412-53651431 | None:intergenic | 40.0% | |
| GTTGCCTTAACTTCTAAACC+AGG | - | chr1_1:53651534-53651553 | None:intergenic | 40.0% | |
| ! | TAACCTTGCTGTATACTCGA+AGG | + | chr1_1:53651608-53651627 | Msa0028630:CDS | 40.0% |
| ATACCTTCGAGTATACAGCA+AGG | - | chr1_1:53651614-53651633 | None:intergenic | 40.0% | |
| ! | TTCTATTGATTGCCTTCCCT+TGG | + | chr1_1:53651738-53651757 | Msa0028630:intron | 40.0% |
| ! | TCTATTGATTGCCTTCCCTT+GGG | + | chr1_1:53651739-53651758 | Msa0028630:intron | 40.0% |
| AAACCACAATCCGAATCATC+TGG | + | chr1_1:53651867-53651886 | Msa0028630:CDS | 40.0% | |
| ATTAGAAGCGATGAAGATGG+AGG | + | chr1_1:53651989-53652008 | Msa0028630:CDS | 40.0% | |
| TTTCCATGTTCACACCTCTT+AGG | + | chr1_1:53652826-53652845 | Msa0028630:intron | 40.0% | |
| TACACTACTGATGACCTAAG+AGG | - | chr1_1:53652843-53652862 | None:intergenic | 40.0% | |
| CCCAAACACAACTCTCAATA+TGG | - | chr1_1:53652881-53652900 | None:intergenic | 40.0% | |
| ! | TCAGGCAAGAGTTTTTGAAC+AGG | + | chr1_1:53652933-53652952 | Msa0028630:CDS | 40.0% |
| ! | CAGGCAAGAGTTTTTGAACA+GGG | + | chr1_1:53652934-53652953 | Msa0028630:CDS | 40.0% |
| TTAACCATCCATCCAGAATC+AGG | - | chr1_1:53652961-53652980 | None:intergenic | 40.0% | |
| ! | TCTTGGTAGCAGCATTTCGA+CGG | - | chr1_1:53645098-53645117 | None:intergenic | 45.0% |
| ATGGTTTGAGTGTGTGAGGT+TGG | - | chr1_1:53645127-53645146 | None:intergenic | 45.0% | |
| ACGCAAAGCAGCATCAAGAA+TGG | - | chr1_1:53645391-53645410 | None:intergenic | 45.0% | |
| ACCTCTTGTCACCCATATCT+CGG | - | chr1_1:53645598-53645617 | None:intergenic | 45.0% | |
| ! | ACCCCGTCAAAGGAAGTTTT+TGG | - | chr1_1:53645827-53645846 | None:intergenic | 45.0% |
| TATAGCACCACCTCCAAAAG+TGG | + | chr1_1:53646509-53646528 | Msa0028630:intron | 45.0% | |
| !! | TTTGGTTCCACTTTTGGAGG+TGG | - | chr1_1:53646519-53646538 | None:intergenic | 45.0% |
| TACGTGTTTGTGTCTGTGTG+AGG | + | chr1_1:53646767-53646786 | Msa0028630:intron | 45.0% | |
| !! | TGAGTTGGCTTTATGAGGAC+CGG | - | chr1_1:53646942-53646961 | None:intergenic | 45.0% |
| GTCCTCATAAAGCCAACTCA+TGG | + | chr1_1:53646942-53646961 | Msa0028630:CDS | 45.0% | |
| !! | CTCCATGAGTTGGCTTTATG+AGG | - | chr1_1:53646947-53646966 | None:intergenic | 45.0% |
| CTCATAAAGCCAACTCATGG+AGG | + | chr1_1:53646945-53646964 | Msa0028630:CDS | 45.0% | |
| ATAAAGCCAACTCATGGAGG+AGG | + | chr1_1:53646948-53646967 | Msa0028630:CDS | 45.0% | |
| AAGAATGTGTTTGGGCGGTT+TGG | + | chr1_1:53647106-53647125 | Msa0028630:intron | 45.0% | |
| CTCCTTAATCATTGCCCTGA+GGG | - | chr1_1:53647396-53647415 | None:intergenic | 45.0% | |
| ACTCCTTAATCATTGCCCTG+AGG | - | chr1_1:53647397-53647416 | None:intergenic | 45.0% | |
| AGATGCTTAACCATTGCCCT+TGG | + | chr1_1:53647508-53647527 | Msa0028630:intron | 45.0% | |
| GATGCTTAACCATTGCCCTT+GGG | + | chr1_1:53647509-53647528 | Msa0028630:intron | 45.0% | |
| ATGCTTAACCATTGCCCTTG+GGG | + | chr1_1:53647510-53647529 | Msa0028630:intron | 45.0% | |
| !! | CGGTGTCAACACAATTTTGC+TGG | + | chr1_1:53647737-53647756 | Msa0028630:CDS | 45.0% |
| ACTTGGACTTCTATGTGCCT+CGG | - | chr1_1:53647780-53647799 | None:intergenic | 45.0% | |
| AAGCAGCCAATGAAGCTTCT+TGG | - | chr1_1:53647842-53647861 | None:intergenic | 45.0% | |
| GAGCTCATGTCCAAGACAAA+TGG | - | chr1_1:53647982-53648001 | None:intergenic | 45.0% | |
| !! | CTGTTTCTGCAGCAAAGGTA+AGG | + | chr1_1:53648259-53648278 | Msa0028630:intron | 45.0% |
| AGAAGCCTAGTAGAGTGTAG+AGG | + | chr1_1:53648676-53648695 | Msa0028630:intron | 45.0% | |
| GAAGCCTAGTAGAGTGTAGA+GGG | + | chr1_1:53648677-53648696 | Msa0028630:intron | 45.0% | |
| AAGGAGGTTAGTGTAGCATG+AGG | + | chr1_1:53648732-53648751 | Msa0028630:intron | 45.0% | |
| AGGAGGTTAGTGTAGCATGA+GGG | + | chr1_1:53648733-53648752 | Msa0028630:intron | 45.0% | |
| TATCTTCCTGTGAAGACCCT+TGG | + | chr1_1:53648799-53648818 | Msa0028630:intron | 45.0% | |
| !! | TCTGCTTGTTGTTGAGCATC+AGG | + | chr1_1:53648975-53648994 | Msa0028630:intron | 45.0% |
| GAGCATCAGGTATGGTTATG+TGG | + | chr1_1:53648988-53649007 | Msa0028630:intron | 45.0% | |
| CTATTACAATGCTGGGACAG+TGG | + | chr1_1:53649231-53649250 | Msa0028630:CDS | 45.0% | |
| TCAATCCAAGCACCTGAAGA+CGG | - | chr1_1:53649309-53649328 | None:intergenic | 45.0% | |
| CCAACAATCATCTCTGTGAC+AGG | - | chr1_1:53649408-53649427 | None:intergenic | 45.0% | |
| CCTGTCACAGAGATGATTGT+TGG | + | chr1_1:53649405-53649424 | Msa0028630:CDS | 45.0% | |
| ! | TGTGATTGACTCAGTGGAAG+AGG | - | chr1_1:53649474-53649493 | None:intergenic | 45.0% |
| ! | TCCCGTCTCTTTTCTTTTGG+TGG | + | chr1_1:53649521-53649540 | Msa0028630:intron | 45.0% |
| ! | CGTCTCTTTTCTTTTGGTGG+TGG | + | chr1_1:53649524-53649543 | Msa0028630:intron | 45.0% |
| !!! | TCTTTTCTTTTGGTGGTGGG+TGG | + | chr1_1:53649528-53649547 | Msa0028630:intron | 45.0% |
| !!! | CTTTTCTTTTGGTGGTGGGT+GGG | + | chr1_1:53649529-53649548 | Msa0028630:intron | 45.0% |
| !!! | TTTTCTTTTGGTGGTGGGTG+GGG | + | chr1_1:53649530-53649549 | Msa0028630:intron | 45.0% |
| CCCCTCCTGTTTATTTAGTG+TGG | + | chr1_1:53649568-53649587 | Msa0028630:intron | 45.0% | |
| !! | AAAACCGGCTTGTAAGGTGA+GGG | - | chr1_1:53649791-53649810 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr1_1:53649797-53649816 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr1_1:53649794-53649813 | Msa0028630:intron | 45.0% |
| TTGCTGGAGAGTCTTCTTAG+CGG | + | chr1_1:53650006-53650025 | Msa0028630:intron | 45.0% | |
| TATCACGTTCCAGTCTCATC+AGG | + | chr1_1:53650308-53650327 | Msa0028630:CDS | 45.0% | |
| ATCACGTTCCAGTCTCATCA+GGG | + | chr1_1:53650309-53650328 | Msa0028630:CDS | 45.0% | |
| GTGGATACTGGGGTTAAAGA+AGG | + | chr1_1:53650473-53650492 | Msa0028630:CDS | 45.0% | |
| GATTGCTAAGCTTGTAGTGC+AGG | + | chr1_1:53650526-53650545 | Msa0028630:CDS | 45.0% | |
| AGAAAATCGTGCTGCAGCAT+TGG | + | chr1_1:53650550-53650569 | Msa0028630:CDS | 45.0% | |
| !! | TGCAGCATTGGTCAAACTGA+AGG | + | chr1_1:53650562-53650581 | Msa0028630:CDS | 45.0% |
| TATGCTTCTTTGGCAGACTC+TGG | - | chr1_1:53651066-53651085 | None:intergenic | 45.0% | |
| CAATGAGACATGCAGCTACA+AGG | - | chr1_1:53651113-53651132 | None:intergenic | 45.0% | |
| !! | GCTTGATGATGGACTCTGAA+AGG | - | chr1_1:53651293-53651312 | None:intergenic | 45.0% |
| ! | TTGTACGCTTGGCTTGATGA+TGG | - | chr1_1:53651304-53651323 | None:intergenic | 45.0% |
| CATTTGCTCCTGAATCCCAA+GGG | - | chr1_1:53651757-53651776 | None:intergenic | 45.0% | |
| TCATTTGCTCCTGAATCCCA+AGG | - | chr1_1:53651758-53651777 | None:intergenic | 45.0% | |
| ! | AATAGGCCTCAAGTTGTCTG+AGG | + | chr1_1:53651827-53651846 | Msa0028630:CDS | 45.0% |
| GAAGAACGAGACTAGAGTAG+AGG | + | chr1_1:53651947-53651966 | Msa0028630:CDS | 45.0% | |
| AACGAGACTAGAGTAGAGGT+GGG | + | chr1_1:53651951-53651970 | Msa0028630:CDS | 45.0% | |
| !! | GTTGTAAAGGCACCATCATC+TGG | + | chr1_1:53652111-53652130 | Msa0028630:CDS | 45.0% |
| CCATCATCTGGCTATGTACA+CGG | + | chr1_1:53652123-53652142 | Msa0028630:CDS | 45.0% | |
| CATCATCTGGCTATGTACAC+GGG | + | chr1_1:53652124-53652143 | Msa0028630:CDS | 45.0% | |
| ACAAGTTACAGTGGGTGAAC+AGG | + | chr1_1:53652149-53652168 | Msa0028630:CDS | 45.0% | |
| TCTTCACATTGGTCATGGTC+TGG | + | chr1_1:53652226-53652245 | Msa0028630:intron | 45.0% | |
| ! | TGACCTAAGAGGTGTGAACA+TGG | - | chr1_1:53652832-53652851 | None:intergenic | 45.0% |
| ATTGAGAGTTGTGTTTGGGC+AGG | + | chr1_1:53652882-53652901 | Msa0028630:intron | 45.0% | |
| TTTGAACAGGGACCTGATTC+TGG | + | chr1_1:53652946-53652965 | Msa0028630:CDS | 45.0% | |
| CGTGATGGTTTGAGTGTGTG+AGG | - | chr1_1:53645131-53645150 | None:intergenic | 50.0% | |
| ACCAGAACCGCTAAGAGACT+CGG | + | chr1_1:53645246-53645265 | Msa0028630:CDS | 50.0% | |
| GCGAATTCCGAGTCTCTTAG+CGG | - | chr1_1:53645256-53645275 | None:intergenic | 50.0% | |
| TCCGATGAAGCCATTCGCAT+CGG | + | chr1_1:53645327-53645346 | Msa0028630:CDS | 50.0% | |
| ACCGATGCGAATGGCTTCAT+CGG | - | chr1_1:53645331-53645350 | None:intergenic | 50.0% | |
| TTGAGGTAACTGAGACGAGC+TGG | - | chr1_1:53645360-53645379 | None:intergenic | 50.0% | |
| !! | CTTGATGCTGCTTTGCGTTC+TGG | + | chr1_1:53645393-53645412 | Msa0028630:CDS | 50.0% |
| TCCGAGATATGGGTGACAAG+AGG | + | chr1_1:53645594-53645613 | Msa0028630:CDS | 50.0% | |
| ! | AAGAGAATAATGGGGGCTGC+AGG | + | chr1_1:53646837-53646856 | Msa0028630:CDS | 50.0% |
| ! | AGAGAATAATGGGGGCTGCA+GGG | + | chr1_1:53646838-53646857 | Msa0028630:CDS | 50.0% |
| CCATGATATCCAGGCACAAG+CGG | - | chr1_1:53646867-53646886 | None:intergenic | 50.0% | |
| AAGCTGGAGGCGGATCAAAT+TGG | + | chr1_1:53646912-53646931 | Msa0028630:CDS | 50.0% | |
| AGCTGGAGGCGGATCAAATT+GGG | + | chr1_1:53646913-53646932 | Msa0028630:CDS | 50.0% | |
| GGCGGATCAAATTGGGTATC+CGG | + | chr1_1:53646920-53646939 | Msa0028630:CDS | 50.0% | |
| TTTCCTCCTCCTCCATGAGT+TGG | - | chr1_1:53646957-53646976 | None:intergenic | 50.0% | |
| AACTCATGGAGGAGGAGGAA+AGG | + | chr1_1:53646956-53646975 | Msa0028630:CDS | 50.0% | |
| !! | TTTGGGCGGTTTGGCCATTT+TGG | + | chr1_1:53647115-53647134 | Msa0028630:intron | 50.0% |
| TCTTGCTAACTAGTGCCCTC+AGG | + | chr1_1:53647378-53647397 | Msa0028630:intron | 50.0% | |
| CTTGCTAACTAGTGCCCTCA+GGG | + | chr1_1:53647379-53647398 | Msa0028630:intron | 50.0% | |
| TGCCCTCAGGGCAATGATTA+AGG | + | chr1_1:53647391-53647410 | Msa0028630:intron | 50.0% | |
| AATGCTAACCAGTGCCCCAA+GGG | - | chr1_1:53647527-53647546 | None:intergenic | 50.0% | |
| CGTGAAGCAGCTGCTTCTTT+CGG | + | chr1_1:53647717-53647736 | Msa0028630:CDS | 50.0% | |
| CTTCTTGGAGAAACGGTAGC+AGG | - | chr1_1:53647827-53647846 | None:intergenic | 50.0% | |
| TCCTGAGTTTCGTGCACACT+TGG | + | chr1_1:53648227-53648246 | Msa0028630:CDS | 50.0% | |
| CCTGAGTTTCGTGCACACTT+GGG | + | chr1_1:53648228-53648247 | Msa0028630:CDS | 50.0% | |
| CACACCCTCTACACTCTACT+AGG | - | chr1_1:53648684-53648703 | None:intergenic | 50.0% | |
| GGAGGTTAGTGTAGCATGAG+GGG | + | chr1_1:53648734-53648753 | Msa0028630:intron | 50.0% | |
| GAGGTTAGTGTAGCATGAGG+GGG | + | chr1_1:53648735-53648754 | Msa0028630:intron | 50.0% | |
| GGAGATGAATACCCGTCTTC+AGG | + | chr1_1:53649294-53649313 | Msa0028630:CDS | 50.0% | |
| AATACCCGTCTTCAGGTGCT+TGG | + | chr1_1:53649301-53649320 | Msa0028630:intron | 50.0% | |
| CAATCCAAGCACCTGAAGAC+GGG | - | chr1_1:53649308-53649327 | None:intergenic | 50.0% | |
| CATGCCCCCATGTTATACTC+AGG | - | chr1_1:53649367-53649386 | None:intergenic | 50.0% | |
| ! | ACATGGGGGCATGTTAGTAC+AGG | + | chr1_1:53649374-53649393 | Msa0028630:intron | 50.0% |
| !!! | TTTCTTTTGGTGGTGGGTGG+GGG | + | chr1_1:53649531-53649550 | Msa0028630:intron | 50.0% |
| !! | AAACCGGCTTGTAAGGTGAG+GGG | - | chr1_1:53649790-53649809 | None:intergenic | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr1_1:53649792-53649811 | None:intergenic | 50.0% |
| ! | TTCTGTGTTAGTGGGGTGCT+TGG | + | chr1_1:53649893-53649912 | Msa0028630:intron | 50.0% |
| TCACGTTCCAGTCTCATCAG+GGG | + | chr1_1:53650310-53650329 | Msa0028630:CDS | 50.0% | |
| CTTTAACCCCAGTATCCACC+CGG | - | chr1_1:53650472-53650491 | None:intergenic | 50.0% | |
| GGCCAAGGGTTGACAATGTA+GGG | + | chr1_1:53650754-53650773 | Msa0028630:intron | 50.0% | |
| CACCCTACATTGTCAACCCT+TGG | - | chr1_1:53650759-53650778 | None:intergenic | 50.0% | |
| CAAGGGTTGACAATGTAGGG+TGG | + | chr1_1:53650757-53650776 | Msa0028630:intron | 50.0% | |
| GTATCTGCTAGAAACCCCTC+TGG | + | chr1_1:53651147-53651166 | Msa0028630:CDS | 50.0% | |
| CATCTGCCACTATGTTCAGG+TGG | + | chr1_1:53651233-53651252 | Msa0028630:intron | 50.0% | |
| GCAGCAGCTTACACCCTATA+TGG | + | chr1_1:53651255-53651274 | Msa0028630:CDS | 50.0% | |
| ACCATCACTTACCTGCCTGA+TGG | + | chr1_1:53651380-53651399 | Msa0028630:CDS | 50.0% | |
| CCATCACTTACCTGCCTGAT+GGG | + | chr1_1:53651381-53651400 | Msa0028630:CDS | 50.0% | |
| TCAATCAGGTACCTCCCATC+AGG | - | chr1_1:53651398-53651417 | None:intergenic | 50.0% | |
| !! | TGATGGGAGGTACCTGATTG+AGG | + | chr1_1:53651397-53651416 | Msa0028630:CDS | 50.0% |
| ATTGCCTTCCCTTGGGATTC+AGG | + | chr1_1:53651746-53651765 | Msa0028630:intron | 50.0% | |
| CCTCAACCTCAGACAACTTG+AGG | - | chr1_1:53651836-53651855 | None:intergenic | 50.0% | |
| ! | CCTCAAGTTGTCTGAGGTTG+AGG | + | chr1_1:53651833-53651852 | Msa0028630:CDS | 50.0% |
| ! | ACGCCAGATGATTCGGATTG+TGG | - | chr1_1:53651873-53651892 | None:intergenic | 50.0% |
| TCGAGGAACGCCAGATGATT+CGG | - | chr1_1:53651880-53651899 | None:intergenic | 50.0% | |
| TTAACCACCAAGCCTGCCAT+GGG | - | chr1_1:53651918-53651937 | None:intergenic | 50.0% | |
| GAACGAGACTAGAGTAGAGG+TGG | + | chr1_1:53651950-53651969 | Msa0028630:CDS | 50.0% | |
| CCGTGTACATAGCCAGATGA+TGG | - | chr1_1:53652126-53652145 | None:intergenic | 50.0% | |
| ! | ACACGGGCTACAAGTTACAG+TGG | + | chr1_1:53652140-53652159 | Msa0028630:CDS | 50.0% |
| ! | CACGGGCTACAAGTTACAGT+GGG | + | chr1_1:53652141-53652160 | Msa0028630:CDS | 50.0% |
| GTGGGTGAACAGGTTTCTGA+TGG | + | chr1_1:53652159-53652178 | Msa0028630:CDS | 50.0% | |
| AACAGGGACCTGATTCTGGA+TGG | + | chr1_1:53652950-53652969 | Msa0028630:CDS | 50.0% | |
| TCCGAGTCTCTTAGCGGTTC+TGG | - | chr1_1:53645250-53645269 | None:intergenic | 55.0% | |
| AGCGTCGCTGTAAACAGCGA+CGG | - | chr1_1:53645280-53645299 | None:intergenic | 55.0% | |
| ATCGGAAGATGCGACGTGGA+GGG | - | chr1_1:53645313-53645332 | None:intergenic | 55.0% | |
| CTTCATCGGAAGATGCGACG+TGG | - | chr1_1:53645317-53645336 | None:intergenic | 55.0% | |
| AGGTAACTGAGACGAGCTGG+CGG | - | chr1_1:53645357-53645376 | None:intergenic | 55.0% | |
| TGCTTTGCGTTCTGGTGCTC+AGG | + | chr1_1:53645401-53645420 | Msa0028630:CDS | 55.0% | |
| TTGCGTTCTGGTGCTCAGGT+AGG | + | chr1_1:53645405-53645424 | Msa0028630:intron | 55.0% | |
| ATATCTCGGATCGCAGACGC+GGG | - | chr1_1:53645584-53645603 | None:intergenic | 55.0% | |
| CATATCTCGGATCGCAGACG+CGG | - | chr1_1:53645585-53645604 | None:intergenic | 55.0% | |
| GCGTCTGCGATCCGAGATAT+GGG | + | chr1_1:53645584-53645603 | Msa0028630:CDS | 55.0% | |
| TGTCGGGGCTTGAGCTTACA+AGG | + | chr1_1:53646332-53646351 | Msa0028630:intron | 55.0% | |
| GTCGGGGCTTGAGCTTACAA+GGG | + | chr1_1:53646333-53646352 | Msa0028630:intron | 55.0% | |
| ! | GAGAATAATGGGGGCTGCAG+GGG | + | chr1_1:53646839-53646858 | Msa0028630:CDS | 55.0% |
| CCGCTTGTGCCTGGATATCA+TGG | + | chr1_1:53646864-53646883 | Msa0028630:CDS | 55.0% | |
| AAGCCAACTCATGGAGGAGG+AGG | + | chr1_1:53646951-53646970 | Msa0028630:CDS | 55.0% | |
| GAATGCTAACCAGTGCCCCA+AGG | - | chr1_1:53647528-53647547 | None:intergenic | 55.0% | |
| CTGCTTCACGTTGTGCTGCA+AGG | - | chr1_1:53647707-53647726 | None:intergenic | 55.0% | |
| CCCAAGTGTGCACGAAACTC+AGG | - | chr1_1:53648231-53648250 | None:intergenic | 55.0% | |
| TCGTGCACACTTGGGTCAAG+CGG | + | chr1_1:53648236-53648255 | Msa0028630:CDS | 55.0% | |
| !! | AGCGGCTGTTTCTGCAGCAA+AGG | + | chr1_1:53648254-53648273 | Msa0028630:CDS | 55.0% |
| AGTGTAGCATGAGGGGGTAG+AGG | + | chr1_1:53648741-53648760 | Msa0028630:intron | 55.0% | |
| GTGTAGCATGAGGGGGTAGA+GGG | + | chr1_1:53648742-53648761 | Msa0028630:intron | 55.0% | |
| ! | CTACAAGGGTGCAGAGCCAA+GGG | - | chr1_1:53648818-53648837 | None:intergenic | 55.0% |
| ! | ACTACAAGGGTGCAGAGCCA+AGG | - | chr1_1:53648819-53648838 | None:intergenic | 55.0% |
| GTGTGGGTGAGGGACTTTGT+AGG | + | chr1_1:53649585-53649604 | Msa0028630:intron | 55.0% | |
| TGGTGCAGTACTCCAGTTGC+TGG | - | chr1_1:53650287-53650306 | None:intergenic | 55.0% | |
| CACGTTCCAGTCTCATCAGG+GGG | + | chr1_1:53650311-53650330 | Msa0028630:CDS | 55.0% | |
| AACTGACCCCCTGATGAGAC+TGG | - | chr1_1:53650320-53650339 | None:intergenic | 55.0% | |
| TACTATCTTGGCAGTCCGGG+TGG | + | chr1_1:53650454-53650473 | Msa0028630:intron | 55.0% | |
| GGGCCAAGGGTTGACAATGT+AGG | + | chr1_1:53650753-53650772 | Msa0028630:intron | 55.0% | |
| CTGCTGCCACCTGAACATAG+TGG | - | chr1_1:53651242-53651261 | None:intergenic | 55.0% | |
| CCCATCAGGCAGGTAAGTGA+TGG | - | chr1_1:53651384-53651403 | None:intergenic | 55.0% | |
| TCACTTACCTGCCTGATGGG+AGG | + | chr1_1:53651384-53651403 | Msa0028630:CDS | 55.0% | |
| TGCTCCTGAATCCCAAGGGA+AGG | - | chr1_1:53651753-53651772 | None:intergenic | 55.0% | |
| GAATCATCTGGCGTTCCTCG+AGG | + | chr1_1:53651879-53651898 | Msa0028630:CDS | 55.0% | |
| CTTAACCACCAAGCCTGCCA+TGG | - | chr1_1:53651919-53651938 | None:intergenic | 55.0% | |
| !! | CATGGCAGGCTTGGTGGTTA+AGG | + | chr1_1:53651917-53651936 | Msa0028630:CDS | 55.0% |
| GGGACCTGATTCTGGATGGA+TGG | + | chr1_1:53652954-53652973 | Msa0028630:CDS | 55.0% | |
| ACTCACGTGCACGCACGTGA+TGG | - | chr1_1:53645146-53645165 | None:intergenic | 60.0% | |
| CATCGGAAGATGCGACGTGG+AGG | - | chr1_1:53645314-53645333 | None:intergenic | 60.0% | |
| TAACTGAGACGAGCTGGCGG+AGG | - | chr1_1:53645354-53645373 | None:intergenic | 60.0% | |
| CGCGTCTGCGATCCGAGATA+TGG | + | chr1_1:53645583-53645602 | Msa0028630:CDS | 60.0% | |
| AACCATTGCCCTTGGGGCAC+TGG | + | chr1_1:53647516-53647535 | Msa0028630:intron | 60.0% | |
| AACCAGTGCCCCAAGGGCAA+TGG | - | chr1_1:53647521-53647540 | None:intergenic | 60.0% | |
| GCAGAGCCAAGGGTCTTCAC+AGG | - | chr1_1:53648808-53648827 | None:intergenic | 60.0% | |
| GCACCCCTCACCTTACAAGC+CGG | + | chr1_1:53649784-53649803 | Msa0028630:intron | 60.0% | |
| TTGGCAGTCCGGGTGGATAC+TGG | + | chr1_1:53650461-53650480 | Msa0028630:intron | 60.0% | |
| TGGCAGTCCGGGTGGATACT+GGG | + | chr1_1:53650462-53650481 | Msa0028630:intron | 60.0% | |
| TCAGGTACCTCCCATCAGGC+AGG | - | chr1_1:53651394-53651413 | None:intergenic | 60.0% | |
| CGTTCCTCGAGGAGCTGTTG+TGG | + | chr1_1:53651890-53651909 | Msa0028630:CDS | 60.0% | |
| AGGAGCTGTTGTGGCACCCA+TGG | + | chr1_1:53651899-53651918 | Msa0028630:CDS | 60.0% | |
| TGGCGGAGGACCGATGCGAA+TGG | - | chr1_1:53645340-53645359 | None:intergenic | 65.0% | |
| GGCAGTCCGGGTGGATACTG+GGG | + | chr1_1:53650463-53650482 | Msa0028630:intron | 65.0% | |
| ! | GGTGCCACAACAGCTCCTCG+AGG | - | chr1_1:53651897-53651916 | None:intergenic | 65.0% |
| GCTGTTGTGGCACCCATGGC+AGG | + | chr1_1:53651903-53651922 | Msa0028630:CDS | 65.0% | |
| TGTGGCACCCATGGCAGGCT+TGG | + | chr1_1:53651908-53651927 | Msa0028630:CDS | 65.0% | |
| TCTCGGATCGCAGACGCGGG+AGG | - | chr1_1:53645581-53645600 | None:intergenic | 70.0% | |
| GGCACCCATGGCAGGCTTGG+TGG | + | chr1_1:53651911-53651930 | Msa0028630:CDS | 70.0% | |
| !! | GCAGGGGTGCCGCTTGTGCC+TGG | + | chr1_1:53646855-53646874 | Msa0028630:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 53644936 | 53653105 | 53644936 | ID=Msa0028630;Name=Msa0028630 |
| chr1_1 | mRNA | 53644936 | 53653105 | 53644936 | ID=Msa0028630-mRNA-1;Parent=Msa0028630;Name=Msa0028630-mRNA-1;_AED=0.11;_eAED=0.11;_QI=136|0.93|0.93|1|1|1|16|0|799 |
| chr1_1 | exon | 53644936 | 53645422 | 53644936 | ID=Msa0028630-mRNA-1:exon:15824;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53645494 | 53645615 | 53645494 | ID=Msa0028630-mRNA-1:exon:15825;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53646830 | 53646977 | 53646830 | ID=Msa0028630-mRNA-1:exon:15826;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53647660 | 53647797 | 53647660 | ID=Msa0028630-mRNA-1:exon:15827;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53648039 | 53648134 | 53648039 | ID=Msa0028630-mRNA-1:exon:15828;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53648216 | 53648275 | 53648216 | ID=Msa0028630-mRNA-1:exon:15829;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53649223 | 53649315 | 53649223 | ID=Msa0028630-mRNA-1:exon:15830;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53649396 | 53649507 | 53649396 | ID=Msa0028630-mRNA-1:exon:15831;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53650231 | 53650332 | 53650231 | ID=Msa0028630-mRNA-1:exon:15832;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53650468 | 53650604 | 53650468 | ID=Msa0028630-mRNA-1:exon:15833;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53650934 | 53651168 | 53650934 | ID=Msa0028630-mRNA-1:exon:15834;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53651252 | 53651418 | 53651252 | ID=Msa0028630-mRNA-1:exon:15835;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53651513 | 53651629 | 53651513 | ID=Msa0028630-mRNA-1:exon:15836;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53651768 | 53652010 | 53651768 | ID=Msa0028630-mRNA-1:exon:15837;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53652108 | 53652203 | 53652108 | ID=Msa0028630-mRNA-1:exon:15838;Parent=Msa0028630-mRNA-1 |
| chr1_1 | exon | 53652923 | 53653105 | 53652923 | ID=Msa0028630-mRNA-1:exon:15839;Parent=Msa0028630-mRNA-1 |
| chr1_1 | five_prime_UTR | 53644936 | 53645071 | 53644936 | ID=Msa0028630-mRNA-1:five_prime_utr;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53645072 | 53645422 | 53645072 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53645494 | 53645615 | 53645494 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53646830 | 53646977 | 53646830 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53647660 | 53647797 | 53647660 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53648039 | 53648134 | 53648039 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53648216 | 53648275 | 53648216 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53649223 | 53649315 | 53649223 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53649396 | 53649507 | 53649396 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53650231 | 53650332 | 53650231 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53650468 | 53650604 | 53650468 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53650934 | 53651168 | 53650934 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53651252 | 53651418 | 53651252 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53651513 | 53651629 | 53651513 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53651768 | 53652010 | 53651768 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53652108 | 53652203 | 53652108 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| chr1_1 | CDS | 53652923 | 53653105 | 53652923 | ID=Msa0028630-mRNA-1:cds;Parent=Msa0028630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
