AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0611320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611320 MtrunA17_Chr4g0044751 98.251 343 6 0 1 343 1 343 0.0 700
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611320 AT4G34030.1 76.261 337 68 1 19 343 42 378 0.0 520

Find 185 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTAAATACACCATATT+TGG 0.155301 4_2:+59491901 None:intergenic
GAGAACATGTTTAAACTAAT+TGG 0.177202 4_2:-59495777 Msa0611320:exon
GCAAATGACCCTACTGTTAA+AGG 0.206882 4_2:-59494443 Msa0611320:CDS
CCTTCTGGTGGGGTTGTGAC+TGG 0.207802 4_2:-59494503 Msa0611320:CDS
TTCTCTTCTTGACAGTAAAT+TGG 0.223941 4_2:+59495731 None:intergenic
GGACAGCCTGTAGGAATTAT+TGG 0.229562 4_2:-59493244 Msa0611320:three_prime_UTR
AGCCTACCACCAATGCAATT+TGG 0.232537 4_2:+59494225 None:intergenic
TTTCCGGATAAGGAAAATTT+TGG 0.235219 4_2:-59494293 Msa0611320:CDS
CGGGTTTCACAATGAATATT+TGG 0.241606 4_2:-59493368 Msa0611320:three_prime_UTR
TAAACATGTTCTCTCTTCTA+TGG 0.249869 4_2:+59495787 None:intergenic
GCCTACCACCAATGCAATTT+GGG 0.252766 4_2:+59494226 None:intergenic
CAAGCAGGCTGATGTCTTTC+CGG 0.257827 4_2:-59494309 Msa0611320:CDS
AGAAGTCTCTGCGGAGGATT+TGG 0.263617 4_2:-59493920 Msa0611320:CDS
TATGAAGAGCCTTTGCCTTC+TGG 0.275232 4_2:-59494518 Msa0611320:CDS
AGATGTTTCTTAACTGTAAT+AGG 0.281386 4_2:+59494407 None:intergenic
ATGAGTTGACAGACCTTTAT+CGG 0.298219 4_2:-59493402 Msa0611320:three_prime_UTR
ACAAATCTACATTAGACTTT+AGG 0.301393 4_2:+59491831 None:intergenic
CTGCACATAGATTTCAAATA+AGG 0.305925 4_2:+59493297 None:intergenic
GCGACAGAAAATACCAAATA+TGG 0.306791 4_2:-59491914 Msa0611320:three_prime_UTR
TGAGTGAATATGAAGCTTGC+AGG 0.334512 4_2:-59494551 Msa0611320:intron
AAATACAAGTTATGAGTATA+AGG 0.335328 4_2:-59493656 Msa0611320:CDS
TTACTCAACGGCGAGGCTTT+GGG 0.338797 4_2:-59492008 Msa0611320:three_prime_UTR
ATTACTCAACGGCGAGGCTT+TGG 0.339622 4_2:-59492009 Msa0611320:three_prime_UTR
AGCCTCGCCGTTGAGTAATA+AGG 0.347863 4_2:+59492013 None:intergenic
CTGTCAACTCATCAAGCTTC+AGG 0.351217 4_2:+59493413 None:intergenic
TCAGAACATCACCGGATTCA+TGG 0.364972 4_2:-59493131 Msa0611320:intron
GTCCGAACTTCATGTTCCTT+TGG 0.370909 4_2:-59492375 Msa0611320:three_prime_UTR
TTCTTTCCTTGAGCTTTCAC+AGG 0.384052 4_2:-59495535 Msa0611320:intron
CATGTTCATAAGGTTCTTGC+TGG 0.385373 4_2:-59495645 Msa0611320:CDS
TGTTTGGGTGCCCTTCCTAA+TGG 0.386494 4_2:-59495705 Msa0611320:CDS
GTGGTAGGCTCTTGCACTGC+TGG 0.388796 4_2:-59494212 Msa0611320:CDS
TATGTGCAGACTCTTGTAAC+AGG 0.393966 4_2:-59493283 Msa0611320:three_prime_UTR
TACAGCTTGCTGCATATACT+TGG 0.397938 4_2:+59493339 None:intergenic
CTTCTGGTGGGGTTGTGACT+GGG 0.408731 4_2:-59494502 Msa0611320:CDS
GGCTGATGTCTTTCCGGATA+AGG 0.409916 4_2:-59494303 Msa0611320:CDS
CGAAAACCAACAACCGATAA+AGG 0.413437 4_2:+59493389 None:intergenic
TGGTGCTTTCCTTCCCAAGC+AGG 0.414000 4_2:-59494324 Msa0611320:CDS
CAAATGACCCTACTGTTAAA+GGG 0.415811 4_2:-59494442 Msa0611320:CDS
GCAGTACACTGCAAGACTTC+GGG 0.417609 4_2:-59493889 Msa0611320:CDS
GAAGTCTCTGCGGAGGATTT+GGG 0.419494 4_2:-59493919 Msa0611320:CDS
TGTTCCATAGCTCCGCCATT+AGG 0.421284 4_2:+59495690 None:intergenic
AGACGATCAATTCTTTCTCT+TGG 0.423934 4_2:+59495573 None:intergenic
ATAATTGTTGGTGGAAGCTT+TGG 0.424489 4_2:-59492433 Msa0611320:three_prime_UTR
GAATTTCATGCTCTTGCACT+TGG 0.426359 4_2:-59493739 Msa0611320:CDS
GAGAGGTGGGAGAGGTTGAA+TGG 0.429245 4_2:-59491797 Msa0611320:three_prime_UTR
TTTAATTCATACCATGAATC+CGG 0.429251 4_2:+59493120 None:intergenic
GATGAATTCAAGAAACTGTA+TGG 0.435673 4_2:-59493526 Msa0611320:CDS
GTCAAGAATTTGCATATGGC+TGG 0.436817 4_2:-59493706 Msa0611320:CDS
CGGAAAGACATCAGCCTGCT+TGG 0.437839 4_2:+59494310 None:intergenic
ATCTGTGATGGGTGGTGCTC+AGG 0.438212 4_2:-59492338 Msa0611320:intron
GAACATGAAGTTCGGACTAT+AGG 0.440234 4_2:+59492381 None:intergenic
ACCTTTCTTCTTCTAAGTAA+AGG 0.442877 4_2:+59495820 None:intergenic
CTTGACCATCACACTTTCAT+CGG 0.444386 4_2:+59494166 None:intergenic
GCCTTTACTTAGAAGAAGAA+AGG 0.447297 4_2:-59495821 Msa0611320:five_prime_UTR
CATAAGGTTCTTGCTGGTGG+TGG 0.450736 4_2:-59495639 Msa0611320:CDS
GACAGACCTTTATCGGTTGT+TGG 0.452410 4_2:-59493395 Msa0611320:three_prime_UTR
GAACCTTATGAACATGAGAT+TGG 0.456065 4_2:+59495652 None:intergenic
GGTGGGGTTGTGACTGGGAT+CGG 0.456548 4_2:-59494497 Msa0611320:CDS
CCTAAAATCACTATAATTGT+TGG 0.457203 4_2:-59492445 Msa0611320:three_prime_UTR
TCAATGAATCGGCTCTGAAA+GGG 0.459441 4_2:-59493204 Msa0611320:three_prime_UTR
ACGGCGAGGCTTTGGGATGA+TGG 0.460924 4_2:-59492001 Msa0611320:three_prime_UTR
CTAATGTAGATTTGTTTACA+TGG 0.461783 4_2:-59491823 Msa0611320:three_prime_UTR
ACTCCAATCTCATGTTCATA+AGG 0.464137 4_2:-59495655 Msa0611320:CDS
GGGAGAGATGTCTCGACAAA+TGG 0.464683 4_2:-59493685 Msa0611320:CDS
GTCTTTCTTCAGAACATCAC+CGG 0.466141 4_2:-59493139 Msa0611320:three_prime_UTR
CAATGCGAGAAATCACTTCT+CGG 0.469080 4_2:+59493566 None:intergenic
ATCGGCCATAGCAGGTATAT+AGG 0.469640 4_2:+59494184 None:intergenic
GTCAAGAAGAGAATTGTGTT+TGG 0.469973 4_2:-59495721 Msa0611320:CDS
ATCACAGATATTCTAGCATT+AGG 0.470037 4_2:+59492352 None:intergenic
TGGCCGACTTTGTATGTTTG+TGG 0.474171 4_2:-59494465 Msa0611320:CDS
TTGTTTCCAATAATTCCTAC+AGG 0.474318 4_2:+59493238 None:intergenic
TTGACATTATAGGCTGCTAC+TGG 0.479167 4_2:-59493946 Msa0611320:intron
CATAAATACAATGATTAAAA+CGG 0.483150 4_2:+59493472 None:intergenic
CATGGGAAGAGAGGTGGGAG+AGG 0.485320 4_2:-59491805 Msa0611320:three_prime_UTR
GTTTACATGGGAAGAGAGGT+GGG 0.489753 4_2:-59491810 Msa0611320:three_prime_UTR
GGAAAGACATCAGCCTGCTT+GGG 0.489867 4_2:+59494311 None:intergenic
GATAATATTCATCAGGCTGC+TGG 0.490449 4_2:-59492247 Msa0611320:intron
GCAAATGGCATAGCAAAGTC+AGG 0.491642 4_2:-59492725 Msa0611320:three_prime_UTR
GCTGATACAAGAAAAGTGAT+TGG 0.495102 4_2:-59491965 Msa0611320:three_prime_UTR
TGCAGTACACTGCAAGACTT+CGG 0.495679 4_2:-59493890 Msa0611320:CDS
GTGATTTCTCGCATTGTTGA+CGG 0.495714 4_2:-59493559 Msa0611320:CDS
ATACAAAGTCGGCCATGCAC+TGG 0.497636 4_2:+59494473 None:intergenic
CATCGTCAAGAATTTGCATA+TGG 0.498312 4_2:-59493710 Msa0611320:CDS
CTTTGCTATGCCATTTGCCT+CGG 0.499152 4_2:+59492730 None:intergenic
TTGCAAGTTGACATATGATC+AGG 0.499699 4_2:+59491725 None:intergenic
ATTGATCGTCTACTTGATCC+TGG 0.501793 4_2:-59495561 Msa0611320:CDS
GAAGAGCCTTTGCCTTCTGG+TGG 0.501882 4_2:-59494515 Msa0611320:CDS
ATTTGTTTACATGGGAAGAG+AGG 0.504374 4_2:-59491814 Msa0611320:three_prime_UTR
AAGAGCCTTTGCCTTCTGGT+GGG 0.506082 4_2:-59494514 Msa0611320:CDS
TGTTTACATGGGAAGAGAGG+TGG 0.506141 4_2:-59491811 Msa0611320:three_prime_UTR
GGCTCAAAATCCGAGGCAAA+TGG 0.507106 4_2:-59492740 Msa0611320:three_prime_UTR
TCAAGAAGAGAATTGTGTTT+GGG 0.509555 4_2:-59495720 Msa0611320:CDS
GATTCCCCAAATTGCATTGG+TGG 0.511734 4_2:-59494231 Msa0611320:CDS
TCTTCTTGACAGTAAATTGG+AGG 0.512701 4_2:+59495734 None:intergenic
CCTTCCTAATGGCGGAGCTA+TGG 0.518394 4_2:-59495694 Msa0611320:CDS
TTCAATGAATCGGCTCTGAA+AGG 0.519323 4_2:-59493205 Msa0611320:three_prime_UTR
TAAGAAACATCTCAGAGCAC+AGG 0.521326 4_2:-59494396 Msa0611320:CDS
GGCCAAAGGAACATGAAGTT+CGG 0.521966 4_2:+59492373 None:intergenic
TTCATGCTCTTGCACTTGGG+AGG 0.526100 4_2:-59493735 Msa0611320:CDS
AAAATCACTATAATTGTTGG+TGG 0.528181 4_2:-59492442 Msa0611320:three_prime_UTR
CCATAGCTCCGCCATTAGGA+AGG 0.529576 4_2:+59495694 None:intergenic
AGACATCAGCCTGCTTGGGA+AGG 0.531693 4_2:+59494315 None:intergenic
GTTGGTGGAAGCTTTGGTGC+TGG 0.534371 4_2:-59492427 Msa0611320:three_prime_UTR
AGTGTGATGGTCAAGGGAAA+TGG 0.534494 4_2:-59494158 Msa0611320:CDS
TACTCAACGTAACATTCCCT+TGG 0.534828 4_2:-59493161 Msa0611320:three_prime_UTR
ATCCGATAGACATACTTAGC+TGG 0.539877 4_2:-59495890 Msa0611320:five_prime_UTR
GTTGAGGCGTATGAGAGAGA+AGG 0.540040 4_2:-59492040 Msa0611320:three_prime_UTR
ACAGTGGAACAAGGAAGAAG+AGG 0.540270 4_2:-59492083 Msa0611320:intron
AGAGCCTTTGCCTTCTGGTG+GGG 0.540577 4_2:-59494513 Msa0611320:CDS
GTGGACCCGAAGCTGTGAAA+AGG 0.541444 4_2:-59495620 Msa0611320:CDS
GTTCTGTCTCAAATAGAGAA+AGG 0.541605 4_2:-59492223 Msa0611320:three_prime_UTR
TCATGCTCTTGCACTTGGGA+GGG 0.542037 4_2:-59493734 Msa0611320:CDS
AGGGATTCCCCAAATTGCAT+TGG 0.545998 4_2:-59494234 Msa0611320:CDS
CAGGCTATAATGTCTGCTCA+AGG 0.547634 4_2:-59494254 Msa0611320:CDS
ACTGGGATCGGTCCAGTGCA+TGG 0.555718 4_2:-59494485 Msa0611320:CDS
AACTGCTGCTTAAGATCGGT+AGG 0.556025 4_2:+59493595 None:intergenic
TGGTAGAATATTCTATAACC+AGG 0.556699 4_2:-59494273 Msa0611320:CDS
GTAGGAATTATTGGAAACAA+TGG 0.557477 4_2:-59493235 Msa0611320:three_prime_UTR
ATCAAACTGCTGCTTAAGAT+CGG 0.557686 4_2:+59493591 None:intergenic
AGTTCATTGACATCATATAG+TGG 0.558008 4_2:+59493631 None:intergenic
TAATGCTAGAATATCTGTGA+TGG 0.558539 4_2:-59492350 Msa0611320:three_prime_UTR
CTTCTTGACAGTAAATTGGA+GGG 0.564436 4_2:+59495735 None:intergenic
CGGTGCCTATATACCTGCTA+TGG 0.565180 4_2:-59494189 Msa0611320:CDS
TGTCTATCGGATCGGAGGGA+TGG 0.566042 4_2:+59495901 None:intergenic
AATTTCATGCTCTTGCACTT+GGG 0.567442 4_2:-59493738 Msa0611320:CDS
ACACTTTCATCGGCCATAGC+AGG 0.567737 4_2:+59494176 None:intergenic
TAAGAACCTGTGAAAGCTCA+AGG 0.569308 4_2:+59495529 None:intergenic
CTTGAGCAGACATTATAGCC+TGG 0.579349 4_2:+59494255 None:intergenic
TCAAGAATTTGCATATGGCT+GGG 0.580272 4_2:-59493705 Msa0611320:CDS
GTTCATAAGGTTCTTGCTGG+TGG 0.580761 4_2:-59495642 Msa0611320:CDS
CCCCAAATTGCATTGGTGGT+AGG 0.581932 4_2:-59494227 Msa0611320:CDS
CGATGAAAGTGTGATGGTCA+AGG 0.582644 4_2:-59494165 Msa0611320:CDS
TAATTGGAAGAAAATCAAGT+TGG 0.583220 4_2:-59495761 Msa0611320:CDS
CTGCTGCTTAAGATCGGTAG+GGG 0.584025 4_2:+59493597 None:intergenic
GTAGGCTCTTGCACTGCTGG+CGG 0.586542 4_2:-59494209 Msa0611320:CDS
TGGAGCTGACCTTAACAAGA+GGG 0.589538 4_2:+59494114 None:intergenic
ACTGCTGCTTAAGATCGGTA+GGG 0.591481 4_2:+59493596 None:intergenic
TTCCAGCTAAGTATGTCTAT+CGG 0.592315 4_2:+59495888 None:intergenic
AGGCTATAATGTCTGCTCAA+GGG 0.594394 4_2:-59494253 Msa0611320:CDS
CAATGAATCGGCTCTGAAAG+GGG 0.595804 4_2:-59493203 Msa0611320:three_prime_UTR
TTTATGTGAATGTGTTGCCA+TGG 0.601437 4_2:-59493455 Msa0611320:three_prime_UTR
TAATGTAGATTTGTTTACAT+GGG 0.605979 4_2:-59491822 Msa0611320:three_prime_UTR
GATGAAAGTGTGATGGTCAA+GGG 0.606022 4_2:-59494164 Msa0611320:CDS
ATATTCTAGCATTAGGCCAA+AGG 0.607064 4_2:+59492359 None:intergenic
GTTCAAAGCGAAAGTAGTTG+AGG 0.608997 4_2:-59492056 Msa0611320:three_prime_UTR
AAGATCTTTGGACAGCCTGT+AGG 0.611650 4_2:-59493253 Msa0611320:three_prime_UTR
GGCAAGAATTAATAATGCCG+TGG 0.613791 4_2:+59495841 None:intergenic
AAATGACCCTACTGTTAAAG+GGG 0.615388 4_2:-59494441 Msa0611320:CDS
AAGTATGTCTATCGGATCGG+AGG 0.618117 4_2:+59495896 None:intergenic
CCAGTCACAACCCCACCAGA+AGG 0.618817 4_2:+59494503 None:intergenic
AATGCTAGAATATCTGTGAT+GGG 0.621217 4_2:-59492349 Msa0611320:three_prime_UTR
CATAGCTCCGCCATTAGGAA+GGG 0.621393 4_2:+59495695 None:intergenic
TCTCAGAGCACAGGAGATTG+CGG 0.623049 4_2:-59494387 Msa0611320:CDS
AGCAGAGTTCAATGACTCCA+CGG 0.624090 4_2:-59495858 Msa0611320:five_prime_UTR
GAGCTGACCTTAACAAGAGG+GGG 0.626239 4_2:+59494116 None:intergenic
GCTAAGTATGTCTATCGGAT+CGG 0.627336 4_2:+59495893 None:intergenic
GGTTATAATACAGTGGAACA+AGG 0.634491 4_2:-59492092 Msa0611320:intron
TTGGGTGCCCTTCCTAATGG+CGG 0.634839 4_2:-59495702 Msa0611320:CDS
GAAACTGTATGGCACTGTGA+GGG 0.635294 4_2:-59493515 Msa0611320:CDS
CTGGAGCTGACCTTAACAAG+AGG 0.642396 4_2:+59494113 None:intergenic
AGGAAGTCCTTATTACTCAA+CGG 0.644858 4_2:-59492020 Msa0611320:three_prime_UTR
AGCTCAAGGAAAGAAGAACC+AGG 0.646634 4_2:+59495543 None:intergenic
AGTATGTCTATCGGATCGGA+GGG 0.646781 4_2:+59495897 None:intergenic
GATGTTCTGAAGAAAGACCA+AGG 0.657231 4_2:+59493144 None:intergenic
TTGCCACAAACATACAAAGT+CGG 0.657316 4_2:+59494462 None:intergenic
GTGTATCTTGTTGACAGTGG+TGG 0.659457 4_2:-59494344 Msa0611320:CDS
ATGTTCTGAAGAAAGACCAA+GGG 0.671246 4_2:+59493145 None:intergenic
GTCTCTGCGGAGGATTTGGG+AGG 0.673290 4_2:-59493916 Msa0611320:CDS
TGGAGAAGAAGTCTCTGCGG+AGG 0.674342 4_2:-59493926 Msa0611320:CDS
AATGACCCTACTGTTAAAGG+GGG 0.679889 4_2:-59494440 Msa0611320:CDS
GTCCTTATTACTCAACGGCG+AGG 0.680927 4_2:-59492015 Msa0611320:three_prime_UTR
GGAGCTGACCTTAACAAGAG+GGG 0.682710 4_2:+59494115 None:intergenic
ACAACCCCACCAGAAGGCAA+AGG 0.683577 4_2:+59494509 None:intergenic
GTAGGTGGGCTCAAAATCCG+AGG 0.686992 4_2:-59492747 Msa0611320:intron
CTGTCAACAAGATACACACA+CGG 0.687428 4_2:+59494350 None:intergenic
GATGGCTGTATCTTGCGCAA+AGG 0.692151 4_2:-59492690 Msa0611320:intron
AGAAACTGTATGGCACTGTG+AGG 0.693839 4_2:-59493516 Msa0611320:CDS
CCTACCACCAATGCAATTTG+GGG 0.702673 4_2:+59494227 None:intergenic
TATGGCCGATGAAAGTGTGA+TGG 0.707459 4_2:-59494171 Msa0611320:CDS
TACTGGAGAAGAAGTCTCTG+CGG 0.708370 4_2:-59493929 Msa0611320:CDS
GCTGGAAACTATGCAATGTG+TGG 0.713945 4_2:-59492409 Msa0611320:three_prime_UTR
TGTGTGTATCTTGTTGACAG+TGG 0.716426 4_2:-59494347 Msa0611320:CDS
ATGACCCTACTGTTAAAGGG+GGG 0.731933 4_2:-59494439 Msa0611320:CDS
AAGTTGACATATGATCAGGA+AGG 0.735721 4_2:+59491729 None:intergenic
GCTAGAATATCTGTGATGGG+TGG 0.747465 4_2:-59492346 Msa0611320:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTTTTATTAACTTTA+TGG - chr4_2:59492135-59492154 Msa0611320:intron 10.0%
!!! ATGAATTAAAAAAATTTGTT+TGG - chr4_2:59494511-59494530 Msa0611320:CDS 10.0%
!! AAATTGTAGTATATTTATAA+AGG - chr4_2:59495107-59495126 Msa0611320:intron 10.0%
!!! AGTTATCTAACATAATTTTA+TGG + chr4_2:59492438-59492457 None:intergenic 15.0%
!! ATATATTATATAAGTGTCTA+TGG + chr4_2:59492532-59492551 None:intergenic 15.0%
!!! AATACATCAAATTCTTTTTA+TGG - chr4_2:59492856-59492875 Msa0611320:intron 15.0%
!!! ATACATCAAATTCTTTTTAT+GGG - chr4_2:59492857-59492876 Msa0611320:intron 15.0%
!! TTCAGTTTATCATAAAATAT+AGG + chr4_2:59492907-59492926 None:intergenic 15.0%
!! CATAAATACAATGATTAAAA+CGG + chr4_2:59494149-59494168 None:intergenic 15.0%
!! AATATAAAAATAAAGTTCCA+TGG + chr4_2:59494183-59494202 None:intergenic 15.0%
!! TTTATCTTGTGATAAATTAA+TGG - chr4_2:59495474-59495493 Msa0611320:intron 15.0%
!! ACAAACAAAAATATGTAAAA+GGG - chr4_2:59495848-59495867 Msa0611320:five_prime_UTR 15.0%
!! AACATAAAAAGTAGTAGTAA+TGG + chr4_2:59492122-59492141 None:intergenic 20.0%
!! TGAAAACAACTTATAACTTA+CGG - chr4_2:59492460-59492479 Msa0611320:intron 20.0%
!!! TTTAGACAAACAAATTTGTT+GGG + chr4_2:59492782-59492801 None:intergenic 20.0%
!! ATTTAGACAAACAAATTTGT+TGG + chr4_2:59492783-59492802 None:intergenic 20.0%
!! TTTGTATTTACCATTCATTT+GGG - chr4_2:59492949-59492968 Msa0611320:intron 20.0%
!! AGAAATGAGAAATACAAAAA+TGG - chr4_2:59493010-59493029 Msa0611320:intron 20.0%
!! AGAAAATACATTATCACAAA+CGG + chr4_2:59493620-59493639 None:intergenic 20.0%
!! CATTAATTGATTGACATTAT+AGG - chr4_2:59493662-59493681 Msa0611320:CDS 20.0%
!! AAATACAAGTTATGAGTATA+AGG - chr4_2:59493962-59493981 Msa0611320:intron 20.0%
!!! TGGAATTTTATTCAATGAAT+CGG - chr4_2:59494403-59494422 Msa0611320:CDS 20.0%
!!! TTTAACAATTCTTGATTTGA+GGG + chr4_2:59494752-59494771 None:intergenic 20.0%
!! TGTTTATAGAAAGAATATCT+AGG + chr4_2:59494775-59494794 None:intergenic 20.0%
!!! ATTAGTTGATAATATTCATC+AGG - chr4_2:59495364-59495383 Msa0611320:intron 20.0%
!! TCAGGTAAAAATATTGTTAT+TGG - chr4_2:59495439-59495458 Msa0611320:intron 20.0%
!!! CAGGTAAAAATATTGTTATT+GGG - chr4_2:59495440-59495459 Msa0611320:intron 20.0%
!!! TAATGTAGATTTGTTTACAT+GGG - chr4_2:59495796-59495815 Msa0611320:five_prime_UTR 20.0%
!! GACAAACAAAAATATGTAAA+AGG - chr4_2:59495847-59495866 Msa0611320:five_prime_UTR 20.0%
! GAGAACATGTTTAAACTAAT+TGG - chr4_2:59491841-59491860 Msa0611320:three_prime_UTR 25.0%
! TAATTGGAAGAAAATCAAGT+TGG - chr4_2:59491857-59491876 Msa0611320:three_prime_UTR 25.0%
!!! ATGTCGAAAAAAAGTGTTTT+TGG - chr4_2:59492336-59492355 Msa0611320:intron 25.0%
!! GTAAATACAAAGAGTATGTT+TGG + chr4_2:59492940-59492959 None:intergenic 25.0%
! CTTTGTATTTACCATTCATT+TGG - chr4_2:59492948-59492967 Msa0611320:intron 25.0%
! AGATGTTTCTTAACTGTAAT+AGG + chr4_2:59493214-59493233 None:intergenic 25.0%
! TAGTTTCACATAAAGGATAT+TGG + chr4_2:59493549-59493568 None:intergenic 25.0%
! TTTAATTCATACCATGAATC+CGG + chr4_2:59494501-59494520 None:intergenic 25.0%
!! GTTTAACAATTCTTGATTTG+AGG + chr4_2:59494753-59494772 None:intergenic 25.0%
! AACTATAACACATGTCTATT+TGG - chr4_2:59494849-59494868 Msa0611320:intron 25.0%
!! CCAACAATTATAGTGATTTT+AGG + chr4_2:59495176-59495195 None:intergenic 25.0%
! CCTAAAATCACTATAATTGT+TGG - chr4_2:59495173-59495192 Msa0611320:intron 25.0%
! AAAATCACTATAATTGTTGG+TGG - chr4_2:59495176-59495195 Msa0611320:intron 25.0%
! ATTTGTCTCAATGTATATCA+TGG - chr4_2:59495505-59495524 Msa0611320:intron 25.0%
! ATATCATGGTTATAATACAG+TGG - chr4_2:59495519-59495538 Msa0611320:intron 25.0%
! CATTCTAAATACACCATATT+TGG + chr4_2:59495720-59495739 None:intergenic 25.0%
! ACAAATCTACATTAGACTTT+AGG + chr4_2:59495790-59495809 None:intergenic 25.0%
!! CTAATGTAGATTTGTTTACA+TGG - chr4_2:59495795-59495814 Msa0611320:five_prime_UTR 25.0%
ACCTTTCTTCTTCTAAGTAA+AGG + chr4_2:59491801-59491820 None:intergenic 30.0%
TAAACATGTTCTCTCTTCTA+TGG + chr4_2:59491834-59491853 None:intergenic 30.0%
TTCTCTTCTTGACAGTAAAT+TGG + chr4_2:59491890-59491909 None:intergenic 30.0%
TCAAGAAGAGAATTGTGTTT+GGG - chr4_2:59491898-59491917 Msa0611320:three_prime_UTR 30.0%
CAAGTAACTATTAGACTAGT+TGG - chr4_2:59492204-59492223 Msa0611320:three_prime_UTR 30.0%
TCATAGCTGAAAATAGCTTA+TGG + chr4_2:59492259-59492278 None:intergenic 30.0%
AATCCAACAAACATTTGACA+TGG - chr4_2:59492286-59492305 Msa0611320:intron 30.0%
TGACATTGCCTTAATATCTA+AGG - chr4_2:59492312-59492331 Msa0611320:intron 30.0%
TCGACATACCTTAGATATTA+AGG + chr4_2:59492323-59492342 None:intergenic 30.0%
!! ATTCATTTTTCCTCCAATGT+AGG + chr4_2:59492621-59492640 None:intergenic 30.0%
TTGACCAATATATAAGTGAG+AGG - chr4_2:59492649-59492668 Msa0611320:intron 30.0%
ATTGCTACACATAACTGTTT+AGG - chr4_2:59492803-59492822 Msa0611320:intron 30.0%
TTGTGTGTTTATCTCAAGAA+AGG - chr4_2:59493034-59493053 Msa0611320:intron 30.0%
! TTTCCGGATAAGGAAAATTT+TGG - chr4_2:59493325-59493344 Msa0611320:three_prime_UTR 30.0%
! CTACCAAAATTTTCCTTATC+CGG + chr4_2:59493331-59493350 None:intergenic 30.0%
TGGTAGAATATTCTATAACC+AGG - chr4_2:59493345-59493364 Msa0611320:three_prime_UTR 30.0%
!!! AATGGCACTATTTTTTTAGC+AGG - chr4_2:59493478-59493497 Msa0611320:exon 30.0%
!!! ATGGCACTATTTTTTTAGCA+GGG - chr4_2:59493479-59493498 Msa0611320:exon 30.0%
ATCCTTTATGTGAAACTATC+TGG - chr4_2:59493551-59493570 Msa0611320:CDS 30.0%
!! TATTTTGCTCAAGGTATTTG+TGG - chr4_2:59493762-59493781 Msa0611320:intron 30.0%
AGTTCATTGACATCATATAG+TGG + chr4_2:59493990-59494009 None:intergenic 30.0%
GATGAATTCAAGAAACTGTA+TGG - chr4_2:59494092-59494111 Msa0611320:intron 30.0%
CTGCACATAGATTTCAAATA+AGG + chr4_2:59494324-59494343 None:intergenic 30.0%
TTGTTTCCAATAATTCCTAC+AGG + chr4_2:59494383-59494402 None:intergenic 30.0%
GTAGGAATTATTGGAAACAA+TGG - chr4_2:59494383-59494402 Msa0611320:CDS 30.0%
AGTTAATGTCATCCATCATT+TGG - chr4_2:59494644-59494663 Msa0611320:intron 30.0%
CAACAACTATGACTGTAATT+AGG + chr4_2:59494673-59494692 None:intergenic 30.0%
TTGTCTGGAAATGATTAGAA+TGG - chr4_2:59494690-59494709 Msa0611320:intron 30.0%
ACAAATTTGAGCTAAGATGT+TGG - chr4_2:59494792-59494811 Msa0611320:intron 30.0%
! TTTTCATCAAACTACTAGCA+GGG + chr4_2:59494825-59494844 None:intergenic 30.0%
! TTTTTCATCAAACTACTAGC+AGG + chr4_2:59494826-59494845 None:intergenic 30.0%
ATAACACATGTCTATTTGGT+AGG - chr4_2:59494853-59494872 Msa0611320:intron 30.0%
GAATGTTATAAATAGTGTGC+TGG + chr4_2:59494964-59494983 None:intergenic 30.0%
ATCACAGATATTCTAGCATT+AGG + chr4_2:59495269-59495288 None:intergenic 30.0%
TAATGCTAGAATATCTGTGA+TGG - chr4_2:59495268-59495287 Msa0611320:intron 30.0%
AATGCTAGAATATCTGTGAT+GGG - chr4_2:59495269-59495288 Msa0611320:intron 30.0%
CATGATTCCTTACAAATTAC+TGG - chr4_2:59495320-59495339 Msa0611320:intron 30.0%
AAAGGCAATAAGAAAAAGCA+AGG - chr4_2:59495413-59495432 Msa0611320:intron 30.0%
TAAGAAAAAGCAAGGAATTC+AGG - chr4_2:59495421-59495440 Msa0611320:intron 30.0%
! AAATATTGTTATTGGGAGCA+AGG - chr4_2:59495447-59495466 Msa0611320:intron 30.0%
TTCCAGCTAAGTATGTCTAT+CGG + chr4_2:59491733-59491752 None:intergenic 35.0%
GCCTTTACTTAGAAGAAGAA+AGG - chr4_2:59491797-59491816 Msa0611320:three_prime_UTR 35.0%
CTTCTTGACAGTAAATTGGA+GGG + chr4_2:59491886-59491905 None:intergenic 35.0%
TCTTCTTGACAGTAAATTGG+AGG + chr4_2:59491887-59491906 None:intergenic 35.0%
GTCAAGAAGAGAATTGTGTT+TGG - chr4_2:59491897-59491916 Msa0611320:three_prime_UTR 35.0%
ACTCCAATCTCATGTTCATA+AGG - chr4_2:59491963-59491982 Msa0611320:three_prime_UTR 35.0%
GAACCTTATGAACATGAGAT+TGG + chr4_2:59491969-59491988 None:intergenic 35.0%
! ACTATTCCTTTTCACAGCTT+CGG + chr4_2:59492007-59492026 None:intergenic 35.0%
AGACGATCAATTCTTTCTCT+TGG + chr4_2:59492048-59492067 None:intergenic 35.0%
AAGCTCTCAAAAACACCTTA+TGG - chr4_2:59492228-59492247 Msa0611320:three_prime_UTR 35.0%
!!! ATTTTGTTGTTGCAAGTGTG+AGG - chr4_2:59492583-59492602 Msa0611320:intron 35.0%
GAGTCCTCTCACTTATATAT+TGG + chr4_2:59492656-59492675 None:intergenic 35.0%
ACCTAAAACCTTGAGACATT+GGG + chr4_2:59492684-59492703 None:intergenic 35.0%
TACCTAAAACCTTGAGACAT+TGG + chr4_2:59492685-59492704 None:intergenic 35.0%
!!! CAAGGTTTTAGGTAAAGATC+TGG - chr4_2:59492691-59492710 Msa0611320:three_prime_UTR 35.0%
! TGGTGTTAAACTAACTTGTG+TGG - chr4_2:59492711-59492730 Msa0611320:three_prime_UTR 35.0%
!! ACAAATTTGTTGGGTCATGA+GGG + chr4_2:59492773-59492792 None:intergenic 35.0%
!! AACAAATTTGTTGGGTCATG+AGG + chr4_2:59492774-59492793 None:intergenic 35.0%
! TTACCATTCATTTGGGTTTG+TGG - chr4_2:59492956-59492975 Msa0611320:intron 35.0%
TTTCCACAAACCCAAATGAA+TGG + chr4_2:59492962-59492981 None:intergenic 35.0%
TTGCCACAAACATACAAAGT+CGG + chr4_2:59493159-59493178 None:intergenic 35.0%
CAAATGACCCTACTGTTAAA+GGG - chr4_2:59493176-59493195 Msa0611320:three_prime_UTR 35.0%
AAATGACCCTACTGTTAAAG+GGG - chr4_2:59493177-59493196 Msa0611320:three_prime_UTR 35.0%
AGCCAGATAGTTTCACATAA+AGG + chr4_2:59493556-59493575 None:intergenic 35.0%
! GTTTCAGACTATTTTGCTCA+AGG - chr4_2:59493753-59493772 Msa0611320:intron 35.0%
ACAATGTCACTAATACAGAC+TGG + chr4_2:59493837-59493856 None:intergenic 35.0%
AGAGCATGAAATTCATCTAC+AGG + chr4_2:59493873-59493892 None:intergenic 35.0%
AATTTCATGCTCTTGCACTT+GGG - chr4_2:59493880-59493899 Msa0611320:CDS 35.0%
CATCGTCAAGAATTTGCATA+TGG - chr4_2:59493908-59493927 Msa0611320:CDS 35.0%
TCAAGAATTTGCATATGGCT+GGG - chr4_2:59493913-59493932 Msa0611320:CDS 35.0%
! ATCAAACTGCTGCTTAAGAT+CGG + chr4_2:59494030-59494049 None:intergenic 35.0%
TTTATGTGAATGTGTTGCCA+TGG - chr4_2:59494163-59494182 Msa0611320:CDS 35.0%
! ATGAGTTGACAGACCTTTAT+CGG - chr4_2:59494216-59494235 Msa0611320:CDS 35.0%
!!! CTTTATCGGTTGTTGGTTTT+CGG - chr4_2:59494230-59494249 Msa0611320:CDS 35.0%
!!! TTTATCGGTTGTTGGTTTTC+GGG - chr4_2:59494231-59494250 Msa0611320:CDS 35.0%
CGGGTTTCACAATGAATATT+TGG - chr4_2:59494250-59494269 Msa0611320:CDS 35.0%
! ACAGGTTTTGCAAAGATCTT+TGG - chr4_2:59494353-59494372 Msa0611320:CDS 35.0%
!! ATGTTCTGAAGAAAGACCAA+GGG + chr4_2:59494476-59494495 None:intergenic 35.0%
ATTCTGACTTCAGAGAAGAT+TGG - chr4_2:59494565-59494584 Msa0611320:intron 35.0%
GTAATTAGGACACCAAATGA+TGG + chr4_2:59494659-59494678 None:intergenic 35.0%
TTACAGTCATAGTTGTTGTC+TGG - chr4_2:59494675-59494694 Msa0611320:intron 35.0%
GGAAATGATTAGAATGGTGA+AGG - chr4_2:59494696-59494715 Msa0611320:intron 35.0%
TTCGCATAAATATCTGCTAC+AGG - chr4_2:59495148-59495167 Msa0611320:intron 35.0%
! ATAATTGTTGGTGGAAGCTT+TGG - chr4_2:59495185-59495204 Msa0611320:intron 35.0%
ATATTCTAGCATTAGGCCAA+AGG + chr4_2:59495262-59495281 None:intergenic 35.0%
TCCTTACAAATTACTGGACT+TGG - chr4_2:59495326-59495345 Msa0611320:intron 35.0%
! TCCAAGTCCAGTAATTTGTA+AGG + chr4_2:59495330-59495349 None:intergenic 35.0%
GTTCTGTCTCAAATAGAGAA+AGG - chr4_2:59495395-59495414 Msa0611320:intron 35.0%
GGTTATAATACAGTGGAACA+AGG - chr4_2:59495526-59495545 Msa0611320:intron 35.0%
AGGAAGTCCTTATTACTCAA+CGG - chr4_2:59495598-59495617 Msa0611320:CDS 35.0%
!! ATCACTTTTCTTGTATCAGC+TGG + chr4_2:59495653-59495672 None:intergenic 35.0%
GCTGATACAAGAAAAGTGAT+TGG - chr4_2:59495653-59495672 Msa0611320:CDS 35.0%
! ATTTGGTATTTTCTGTCGCA+CGG + chr4_2:59495703-59495722 None:intergenic 35.0%
GCGACAGAAAATACCAAATA+TGG - chr4_2:59495704-59495723 Msa0611320:CDS 35.0%
ATTTGTTTACATGGGAAGAG+AGG - chr4_2:59495804-59495823 Msa0611320:five_prime_UTR 35.0%
AAGTTGACATATGATCAGGA+AGG + chr4_2:59495892-59495911 None:intergenic 35.0%
! TTGCAAGTTGACATATGATC+AGG + chr4_2:59495896-59495915 None:intergenic 35.0%
GCTAAGTATGTCTATCGGAT+CGG + chr4_2:59491728-59491747 None:intergenic 40.0%
ATCCGATAGACATACTTAGC+TGG - chr4_2:59491728-59491747 Msa0611320:three_prime_UTR 40.0%
GGCAAGAATTAATAATGCCG+TGG + chr4_2:59491780-59491799 None:intergenic 40.0%
CATGTTCATAAGGTTCTTGC+TGG - chr4_2:59491973-59491992 Msa0611320:three_prime_UTR 40.0%
! CTATTCCTTTTCACAGCTTC+GGG + chr4_2:59492006-59492025 None:intergenic 40.0%
ATTGATCGTCTACTTGATCC+TGG - chr4_2:59492057-59492076 Msa0611320:three_prime_UTR 40.0%
TTCTTTCCTTGAGCTTTCAC+AGG - chr4_2:59492083-59492102 Msa0611320:intron 40.0%
TAAGAACCTGTGAAAGCTCA+AGG + chr4_2:59492092-59492111 None:intergenic 40.0%
TAGCTTATGGACATGCCATA+AGG + chr4_2:59492246-59492265 None:intergenic 40.0%
GTGCCATGTCAAATGTTTGT+TGG + chr4_2:59492292-59492311 None:intergenic 40.0%
! ATTTGTCTGAGATGTACGCA+GGG - chr4_2:59492362-59492381 Msa0611320:three_prime_UTR 40.0%
! GTGAGTTTGAAGTCCTACAT+TGG - chr4_2:59492605-59492624 Msa0611320:intron 40.0%
! AGTTTGAAGTCCTACATTGG+AGG - chr4_2:59492608-59492627 Msa0611320:intron 40.0%
! ACCCAATGTCTCAAGGTTTT+AGG - chr4_2:59492680-59492699 Msa0611320:intron 40.0%
!! CAAATTTGTTGGGTCATGAG+GGG + chr4_2:59492772-59492791 None:intergenic 40.0%
TGAGTGAATATGAAGCTTGC+AGG - chr4_2:59493067-59493086 Msa0611320:intron 40.0%
GCAAATGACCCTACTGTTAA+AGG - chr4_2:59493175-59493194 Msa0611320:three_prime_UTR 40.0%
AATGACCCTACTGTTAAAGG+GGG - chr4_2:59493178-59493197 Msa0611320:three_prime_UTR 40.0%
TAAGAAACATCTCAGAGCAC+AGG - chr4_2:59493222-59493241 Msa0611320:three_prime_UTR 40.0%
CTGTCAACAAGATACACACA+CGG + chr4_2:59493271-59493290 None:intergenic 40.0%
TGTGTGTATCTTGTTGACAG+TGG - chr4_2:59493271-59493290 Msa0611320:three_prime_UTR 40.0%
AGGCTATAATGTCTGCTCAA+GGG - chr4_2:59493365-59493384 Msa0611320:three_prime_UTR 40.0%
CTTGACCATCACACTTTCAT+CGG + chr4_2:59493455-59493474 None:intergenic 40.0%
! GATGAAAGTGTGATGGTCAA+GGG - chr4_2:59493454-59493473 Msa0611320:three_prime_UTR 40.0%
!! GAGCATAAGATAAGAGTGTC+TGG + chr4_2:59493527-59493546 None:intergenic 40.0%
TTGACATTATAGGCTGCTAC+TGG - chr4_2:59493672-59493691 Msa0611320:CDS 40.0%
! TTTGCTCAAGGTATTTGTGG+TGG - chr4_2:59493765-59493784 Msa0611320:intron 40.0%
GAATTTCATGCTCTTGCACT+TGG - chr4_2:59493879-59493898 Msa0611320:CDS 40.0%
GTCAAGAATTTGCATATGGC+TGG - chr4_2:59493912-59493931 Msa0611320:CDS 40.0%
CAATGCGAGAAATCACTTCT+CGG + chr4_2:59494055-59494074 None:intergenic 40.0%
GTGATTTCTCGCATTGTTGA+CGG - chr4_2:59494059-59494078 Msa0611320:intron 40.0%
CGAAAACCAACAACCGATAA+AGG + chr4_2:59494232-59494251 None:intergenic 40.0%
!! TACAGCTTGCTGCATATACT+TGG + chr4_2:59494282-59494301 None:intergenic 40.0%
TATGTGCAGACTCTTGTAAC+AGG - chr4_2:59494335-59494354 Msa0611320:CDS 40.0%
!! TTCAATGAATCGGCTCTGAA+AGG - chr4_2:59494413-59494432 Msa0611320:CDS 40.0%
!! TCAATGAATCGGCTCTGAAA+GGG - chr4_2:59494414-59494433 Msa0611320:CDS 40.0%
TACTCAACGTAACATTCCCT+TGG - chr4_2:59494457-59494476 Msa0611320:CDS 40.0%
!! GATGTTCTGAAGAAAGACCA+AGG + chr4_2:59494477-59494496 None:intergenic 40.0%
GTCTTTCTTCAGAACATCAC+CGG - chr4_2:59494479-59494498 Msa0611320:CDS 40.0%
!! AATGATGTTCTGAGGAGAGA+AGG + chr4_2:59494593-59494612 None:intergenic 40.0%
TTCTCTCCTCAGAACATCAT+TGG - chr4_2:59494592-59494611 Msa0611320:intron 40.0%
TCCTCAGAACATCATTGGAT+TGG - chr4_2:59494597-59494616 Msa0611320:intron 40.0%
ACCAATCCAATGATGTTCTG+AGG + chr4_2:59494601-59494620 None:intergenic 40.0%
ACACATGTCTATTTGGTAGG+TGG - chr4_2:59494856-59494875 Msa0611320:intron 40.0%
CACATGTCTATTTGGTAGGT+GGG - chr4_2:59494857-59494876 Msa0611320:intron 40.0%
AGCAAAGTCAGGTGCAAAAA+TGG - chr4_2:59494904-59494923 Msa0611320:intron 40.0%
!!! TTCGCTGCATGTGTTGTTTT+GGG - chr4_2:59495011-59495030 Msa0611320:intron 40.0%
GAACATGAAGTTCGGACTAT+AGG + chr4_2:59495240-59495259 None:intergenic 40.0%
GATAATATTCATCAGGCTGC+TGG - chr4_2:59495371-59495390 Msa0611320:intron 40.0%
GTTCAAAGCGAAAGTAGTTG+AGG - chr4_2:59495562-59495581 Msa0611320:CDS 40.0%
AGTATGTCTATCGGATCGGA+GGG + chr4_2:59491724-59491743 None:intergenic 45.0%
AAGTATGTCTATCGGATCGG+AGG + chr4_2:59491725-59491744 None:intergenic 45.0%
AGCAGAGTTCAATGACTCCA+CGG - chr4_2:59491760-59491779 Msa0611320:three_prime_UTR 45.0%
GTTCATAAGGTTCTTGCTGG+TGG - chr4_2:59491976-59491995 Msa0611320:three_prime_UTR 45.0%
AGCTCAAGGAAAGAAGAACC+AGG + chr4_2:59492078-59492097 None:intergenic 45.0%
! CATTTGTCTGAGATGTACGC+AGG - chr4_2:59492361-59492380 Msa0611320:three_prime_UTR 45.0%
AGGGACACTCATAATCCTAG+AGG - chr4_2:59492381-59492400 Msa0611320:three_prime_UTR 45.0%
! TTTGAAGCATGAGCACCTCT+AGG + chr4_2:59492399-59492418 None:intergenic 45.0%
! CTAACTTGTGTGGTTGCTCA+TGG - chr4_2:59492721-59492740 Msa0611320:three_prime_UTR 45.0%
TATGAAGAGCCTTTGCCTTC+TGG - chr4_2:59493100-59493119 Msa0611320:intron 45.0%
! TGGCCGACTTTGTATGTTTG+TGG - chr4_2:59493153-59493172 Msa0611320:three_prime_UTR 45.0%
ATGACCCTACTGTTAAAGGG+GGG - chr4_2:59493179-59493198 Msa0611320:three_prime_UTR 45.0%
AAGTCCCCCCTTTAACAGTA+GGG + chr4_2:59493186-59493205 None:intergenic 45.0%
TAAGTCCCCCCTTTAACAGT+AGG + chr4_2:59493187-59493206 None:intergenic 45.0%
GTGTATCTTGTTGACAGTGG+TGG - chr4_2:59493274-59493293 Msa0611320:three_prime_UTR 45.0%
CTTGAGCAGACATTATAGCC+TGG + chr4_2:59493366-59493385 None:intergenic 45.0%
CAGGCTATAATGTCTGCTCA+AGG - chr4_2:59493364-59493383 Msa0611320:three_prime_UTR 45.0%
AGGGATTCCCCAAATTGCAT+TGG - chr4_2:59493384-59493403 Msa0611320:three_prime_UTR 45.0%
GATTCCCCAAATTGCATTGG+TGG - chr4_2:59493387-59493406 Msa0611320:three_prime_UTR 45.0%
CCTACCACCAATGCAATTTG+GGG + chr4_2:59493394-59493413 None:intergenic 45.0%
GCCTACCACCAATGCAATTT+GGG + chr4_2:59493395-59493414 None:intergenic 45.0%
AGCCTACCACCAATGCAATT+TGG + chr4_2:59493396-59493415 None:intergenic 45.0%
ATCGGCCATAGCAGGTATAT+AGG + chr4_2:59493437-59493456 None:intergenic 45.0%
! TATGGCCGATGAAAGTGTGA+TGG - chr4_2:59493447-59493466 Msa0611320:three_prime_UTR 45.0%
! CGATGAAAGTGTGATGGTCA+AGG - chr4_2:59493453-59493472 Msa0611320:three_prime_UTR 45.0%
AGTGTGATGGTCAAGGGAAA+TGG - chr4_2:59493460-59493479 Msa0611320:three_prime_UTR 45.0%
TGGAGCTGACCTTAACAAGA+GGG + chr4_2:59493507-59493526 None:intergenic 45.0%
TACTGGAGAAGAAGTCTCTG+CGG - chr4_2:59493689-59493708 Msa0611320:CDS 45.0%
TGCAGTACACTGCAAGACTT+CGG - chr4_2:59493728-59493747 Msa0611320:CDS 45.0%
GGTGGATATGCACATCTAAG+TGG - chr4_2:59493783-59493802 Msa0611320:intron 45.0%
! ACTGCTGCTTAAGATCGGTA+GGG + chr4_2:59494025-59494044 None:intergenic 45.0%
! AACTGCTGCTTAAGATCGGT+AGG + chr4_2:59494026-59494045 None:intergenic 45.0%
AGAAACTGTATGGCACTGTG+AGG - chr4_2:59494102-59494121 Msa0611320:intron 45.0%
GAAACTGTATGGCACTGTGA+GGG - chr4_2:59494103-59494122 Msa0611320:intron 45.0%
CTGTCAACTCATCAAGCTTC+AGG + chr4_2:59494208-59494227 None:intergenic 45.0%
! GACAGACCTTTATCGGTTGT+TGG - chr4_2:59494223-59494242 Msa0611320:CDS 45.0%
AAGATCTTTGGACAGCCTGT+AGG - chr4_2:59494365-59494384 Msa0611320:CDS 45.0%
GGACAGCCTGTAGGAATTAT+TGG - chr4_2:59494374-59494393 Msa0611320:CDS 45.0%
!! CAATGAATCGGCTCTGAAAG+GGG - chr4_2:59494415-59494434 Msa0611320:CDS 45.0%
TCAGAACATCACCGGATTCA+TGG - chr4_2:59494487-59494506 Msa0611320:CDS 45.0%
! CTTTGCTATGCCATTTGCCT+CGG + chr4_2:59494891-59494910 None:intergenic 45.0%
GCAAATGGCATAGCAAAGTC+AGG - chr4_2:59494893-59494912 Msa0611320:intron 45.0%
GTCAGGTGCAAAAATGGTGA+TGG - chr4_2:59494910-59494929 Msa0611320:intron 45.0%
GTATCTTGCGCAAAGGTTAG+TGG - chr4_2:59494935-59494954 Msa0611320:intron 45.0%
!!! GTTCGCTGCATGTGTTGTTT+TGG - chr4_2:59495010-59495029 Msa0611320:intron 45.0%
!!! TCGCTGCATGTGTTGTTTTG+GGG - chr4_2:59495012-59495031 Msa0611320:intron 45.0%
GCTGGAAACTATGCAATGTG+TGG - chr4_2:59495209-59495228 Msa0611320:intron 45.0%
GTCCGAACTTCATGTTCCTT+TGG - chr4_2:59495243-59495262 Msa0611320:intron 45.0%
GGCCAAAGGAACATGAAGTT+CGG + chr4_2:59495248-59495267 None:intergenic 45.0%
! GCTAGAATATCTGTGATGGG+TGG - chr4_2:59495272-59495291 Msa0611320:intron 45.0%
ACAGTGGAACAAGGAAGAAG+AGG - chr4_2:59495535-59495554 Msa0611320:intron 45.0%
! ATTTTCTGTCGCACGGTTCA+AGG + chr4_2:59495696-59495715 None:intergenic 45.0%
TGTTTACATGGGAAGAGAGG+TGG - chr4_2:59495807-59495826 Msa0611320:five_prime_UTR 45.0%
GTTTACATGGGAAGAGAGGT+GGG - chr4_2:59495808-59495827 Msa0611320:five_prime_UTR 45.0%
TGTTTGGGTGCCCTTCCTAA+TGG - chr4_2:59491913-59491932 Msa0611320:three_prime_UTR 50.0%
CATAGCTCCGCCATTAGGAA+GGG + chr4_2:59491926-59491945 None:intergenic 50.0%
TGTTCCATAGCTCCGCCATT+AGG + chr4_2:59491931-59491950 None:intergenic 50.0%
CATAAGGTTCTTGCTGGTGG+TGG - chr4_2:59491979-59491998 Msa0611320:three_prime_UTR 50.0%
CTCGCAAACCCAATGTCTCA+AGG - chr4_2:59492673-59492692 Msa0611320:intron 50.0%
TGGTTGCTCATGGCCTAATG+TGG - chr4_2:59492731-59492750 Msa0611320:three_prime_UTR 50.0%
CTCAGGGGATCATCCACATT+AGG + chr4_2:59492747-59492766 None:intergenic 50.0%
AAGAGCCTTTGCCTTCTGGT+GGG - chr4_2:59493104-59493123 Msa0611320:intron 50.0%
ATACAAAGTCGGCCATGCAC+TGG + chr4_2:59493148-59493167 None:intergenic 50.0%
TCTCAGAGCACAGGAGATTG+CGG - chr4_2:59493231-59493250 Msa0611320:three_prime_UTR 50.0%
GGAAAGACATCAGCCTGCTT+GGG + chr4_2:59493310-59493329 None:intergenic 50.0%
CAAGCAGGCTGATGTCTTTC+CGG - chr4_2:59493309-59493328 Msa0611320:three_prime_UTR 50.0%
GGCTGATGTCTTTCCGGATA+AGG - chr4_2:59493315-59493334 Msa0611320:three_prime_UTR 50.0%
! CCCCAAATTGCATTGGTGGT+AGG - chr4_2:59493391-59493410 Msa0611320:three_prime_UTR 50.0%
CGGTGCCTATATACCTGCTA+TGG - chr4_2:59493429-59493448 Msa0611320:three_prime_UTR 50.0%
ACACTTTCATCGGCCATAGC+AGG + chr4_2:59493445-59493464 None:intergenic 50.0%
GAGCTGACCTTAACAAGAGG+GGG + chr4_2:59493505-59493524 None:intergenic 50.0%
GGAGCTGACCTTAACAAGAG+GGG + chr4_2:59493506-59493525 None:intergenic 50.0%
CTGGAGCTGACCTTAACAAG+AGG + chr4_2:59493508-59493527 None:intergenic 50.0%
AGAAGTCTCTGCGGAGGATT+TGG - chr4_2:59493698-59493717 Msa0611320:CDS 50.0%
GAAGTCTCTGCGGAGGATTT+GGG - chr4_2:59493699-59493718 Msa0611320:CDS 50.0%
GCAGTACACTGCAAGACTTC+GGG - chr4_2:59493729-59493748 Msa0611320:CDS 50.0%
TTCATGCTCTTGCACTTGGG+AGG - chr4_2:59493883-59493902 Msa0611320:CDS 50.0%
TCATGCTCTTGCACTTGGGA+GGG - chr4_2:59493884-59493903 Msa0611320:CDS 50.0%
GGGAGAGATGTCTCGACAAA+TGG - chr4_2:59493933-59493952 Msa0611320:CDS 50.0%
! CTGCTGCTTAAGATCGGTAG+GGG + chr4_2:59494024-59494043 None:intergenic 50.0%
GGCTCAAAATCCGAGGCAAA+TGG - chr4_2:59494878-59494897 Msa0611320:intron 50.0%
GATGGCTGTATCTTGCGCAA+AGG - chr4_2:59494928-59494947 Msa0611320:intron 50.0%
!!! GTGTTGTTTTGGGGCAGTGA+CGG - chr4_2:59495021-59495040 Msa0611320:intron 50.0%
GTTGAGGCGTATGAGAGAGA+AGG - chr4_2:59495578-59495597 Msa0611320:CDS 50.0%
GTCCTTATTACTCAACGGCG+AGG - chr4_2:59495603-59495622 Msa0611320:CDS 50.0%
AGCCTCGCCGTTGAGTAATA+AGG + chr4_2:59495608-59495627 None:intergenic 50.0%
ATTACTCAACGGCGAGGCTT+TGG - chr4_2:59495609-59495628 Msa0611320:CDS 50.0%
TTACTCAACGGCGAGGCTTT+GGG - chr4_2:59495610-59495629 Msa0611320:CDS 50.0%
TGTCTATCGGATCGGAGGGA+TGG + chr4_2:59491720-59491739 None:intergenic 55.0%
TTGGGTGCCCTTCCTAATGG+CGG - chr4_2:59491916-59491935 Msa0611320:three_prime_UTR 55.0%
CCATAGCTCCGCCATTAGGA+AGG + chr4_2:59491927-59491946 None:intergenic 55.0%
! CCTTCCTAATGGCGGAGCTA+TGG - chr4_2:59491924-59491943 Msa0611320:three_prime_UTR 55.0%
GTGGACCCGAAGCTGTGAAA+AGG - chr4_2:59491998-59492017 Msa0611320:three_prime_UTR 55.0%
GAAGAGCCTTTGCCTTCTGG+TGG - chr4_2:59493103-59493122 Msa0611320:intron 55.0%
AGAGCCTTTGCCTTCTGGTG+GGG - chr4_2:59493105-59493124 Msa0611320:intron 55.0%
ACAACCCCACCAGAAGGCAA+AGG + chr4_2:59493112-59493131 None:intergenic 55.0%
CTTCTGGTGGGGTTGTGACT+GGG - chr4_2:59493116-59493135 Msa0611320:intron 55.0%
TGGTGCTTTCCTTCCCAAGC+AGG - chr4_2:59493294-59493313 Msa0611320:three_prime_UTR 55.0%
AGACATCAGCCTGCTTGGGA+AGG + chr4_2:59493306-59493325 None:intergenic 55.0%
CGGAAAGACATCAGCCTGCT+TGG + chr4_2:59493311-59493330 None:intergenic 55.0%
TGGAGAAGAAGTCTCTGCGG+AGG - chr4_2:59493692-59493711 Msa0611320:CDS 55.0%
! GTAGGTGGGCTCAAAATCCG+AGG - chr4_2:59494871-59494890 Msa0611320:intron 55.0%
! GTTGGTGGAAGCTTTGGTGC+TGG - chr4_2:59495191-59495210 Msa0611320:intron 55.0%
!! ATCTGTGATGGGTGGTGCTC+AGG - chr4_2:59495280-59495299 Msa0611320:intron 55.0%
GAGAGGTGGGAGAGGTTGAA+TGG - chr4_2:59495821-59495840 Msa0611320:five_prime_UTR 55.0%
TGGGTCATGAGGGGAGCTCA+GGG + chr4_2:59492763-59492782 None:intergenic 60.0%
TTGGGTCATGAGGGGAGCTC+AGG + chr4_2:59492764-59492783 None:intergenic 60.0%
CCAGTCACAACCCCACCAGA+AGG + chr4_2:59493118-59493137 None:intergenic 60.0%
CCTTCTGGTGGGGTTGTGAC+TGG - chr4_2:59493115-59493134 Msa0611320:intron 60.0%
GGTGGGGTTGTGACTGGGAT+CGG - chr4_2:59493121-59493140 Msa0611320:intron 60.0%
ACTGGGATCGGTCCAGTGCA+TGG - chr4_2:59493133-59493152 Msa0611320:three_prime_UTR 60.0%
GTGGTAGGCTCTTGCACTGC+TGG - chr4_2:59493406-59493425 Msa0611320:three_prime_UTR 60.0%
GTAGGCTCTTGCACTGCTGG+CGG - chr4_2:59493409-59493428 Msa0611320:three_prime_UTR 60.0%
AGCAGGGCCCCCTCTTGTTA+AGG - chr4_2:59493495-59493514 Msa0611320:CDS 60.0%
GTCTCTGCGGAGGATTTGGG+AGG - chr4_2:59493702-59493721 Msa0611320:CDS 60.0%
!!! GTTTTGGGGCAGTGACGGTG+AGG - chr4_2:59495026-59495045 Msa0611320:intron 60.0%
!! ACGGCGAGGCTTTGGGATGA+TGG - chr4_2:59495617-59495636 Msa0611320:CDS 60.0%
CATGGGAAGAGAGGTGGGAG+AGG - chr4_2:59495813-59495832 Msa0611320:five_prime_UTR 60.0%
GGGTCATGAGGGGAGCTCAG+GGG + chr4_2:59492762-59492781 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 59491696 59495944 59491696 ID=Msa0611320;Name=Msa0611320
chr4_2 mRNA 59491696 59495944 59491696 ID=Msa0611320-mRNA-1;Parent=Msa0611320;Name=Msa0611320-mRNA-1;_AED=0.19;_eAED=0.19;_QI=151|1|1|1|1|0.87|8|1024|353
chr4_2 exon 59491696 59492101 59491696 ID=Msa0611320-mRNA-1:exon:15813;Parent=Msa0611320-mRNA-1
chr4_2 exon 59492198 59492254 59492198 ID=Msa0611320-mRNA-1:exon:15812;Parent=Msa0611320-mRNA-1
chr4_2 exon 59492339 59492470 59492339 ID=Msa0611320-mRNA-1:exon:15811;Parent=Msa0611320-mRNA-1
chr4_2 exon 59492691 59492765 59492691 ID=Msa0611320-mRNA-1:exon:15810;Parent=Msa0611320-mRNA-1
chr4_2 exon 59493132 59493763 59493132 ID=Msa0611320-mRNA-1:exon:15809;Parent=Msa0611320-mRNA-1
chr4_2 exon 59493866 59493956 59493866 ID=Msa0611320-mRNA-1:exon:15808;Parent=Msa0611320-mRNA-1
chr4_2 exon 59494124 59494558 59494124 ID=Msa0611320-mRNA-1:exon:15807;Parent=Msa0611320-mRNA-1
chr4_2 exon 59495536 59495944 59495536 ID=Msa0611320-mRNA-1:exon:15806;Parent=Msa0611320-mRNA-1
chr4_2 five_prime_UTR 59495794 59495944 59495794 ID=Msa0611320-mRNA-1:five_prime_utr;Parent=Msa0611320-mRNA-1
chr4_2 CDS 59495536 59495793 59495536 ID=Msa0611320-mRNA-1:cds;Parent=Msa0611320-mRNA-1
chr4_2 CDS 59494124 59494558 59494124 ID=Msa0611320-mRNA-1:cds;Parent=Msa0611320-mRNA-1
chr4_2 CDS 59493866 59493956 59493866 ID=Msa0611320-mRNA-1:cds;Parent=Msa0611320-mRNA-1
chr4_2 CDS 59493486 59493763 59493486 ID=Msa0611320-mRNA-1:cds;Parent=Msa0611320-mRNA-1
chr4_2 three_prime_UTR 59493132 59493485 59493132 ID=Msa0611320-mRNA-1:three_prime_utr;Parent=Msa0611320-mRNA-1
chr4_2 three_prime_UTR 59492691 59492765 59492691 ID=Msa0611320-mRNA-1:three_prime_utr;Parent=Msa0611320-mRNA-1
chr4_2 three_prime_UTR 59492339 59492470 59492339 ID=Msa0611320-mRNA-1:three_prime_utr;Parent=Msa0611320-mRNA-1
chr4_2 three_prime_UTR 59492198 59492254 59492198 ID=Msa0611320-mRNA-1:three_prime_utr;Parent=Msa0611320-mRNA-1
chr4_2 three_prime_UTR 59491696 59492101 59491696 ID=Msa0611320-mRNA-1:three_prime_utr;Parent=Msa0611320-mRNA-1
Gene Sequence

>Msa0611320

ATGTTTAAACTAATTGGAAGAAAATCAAGTTGGATACCCTCCAATTTACTGTCAAGAAGAGAATTGTGTTTGGGTGCCCTTCCTAATGGCGGAGCTATGGAACACTTGATCACTCAACTCCAATCTCATGTTCATAAGGTTCTTGCTGGTGGTGGACCCGAAGCTGTGAAAAGGAATAGTAGTAGAAATAAGCTTTTACCAAGAGAAAGAATTGATCGTCTACTTGATCCTGGTTCTTCTTTCCTTGAGCTTTCACAGCTTGCAGGACACGAGTTGTATGAAGAGCCTTTGCCTTCTGGTGGGGTTGTGACTGGGATCGGTCCAGTGCATGGCCGACTTTGTATGTTTGTGGCAAATGACCCTACTGTTAAAGGGGGGACTTATTATCCTATTACAGTTAAGAAACATCTCAGAGCACAGGAGATTGCGGCTCAATGCAAATTGCCGTGTGTGTATCTTGTTGACAGTGGTGGTGCTTTCCTTCCCAAGCAGGCTGATGTCTTTCCGGATAAGGAAAATTTTGGTAGAATATTCTATAACCAGGCTATAATGTCTGCTCAAGGGATTCCCCAAATTGCATTGGTGGTAGGCTCTTGCACTGCTGGCGGTGCCTATATACCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACTATTTTTTTAGCAGGGCCCCCTCTTGTTAAGGCTGCTACTGGAGAAGAAGTCTCTGCGGAGGATTTGGGAGGTGCTGCAGTACACTGCAAGACTTCGGGTGTTTCAGACTATTTTGCTCAAGATGAATTTCATGCTCTTGCACTTGGGAGGGACATCGTCAAGAATTTGCATATGGCTGGGAGAGATGTCTCGACAAATGGATTGCAAAATACAAGTTATGAGTATAAGGAGCCACTATATGATGTCAATGAACTTCGTTCTATTGCCCCTACCGATCTTAAGCAGCAGTTTGATATCCGAGAAGTGATTTCTCGCATTGTTGACGGAAGTGAATTTGATGAATTCAAGAAACTGTATGGCACTGTGAGGGCTTATTCACTTCACTTTCTACCGTTTTAA
Protein sequence

>Msa0611320

MFKLIGRKSSWIPSNLLSRRELCLGALPNGGAMEHLITQLQSHVHKVLAGGGPEAVKRNSSRNKLLPRERIDRLLDPGSSFLELSQLAGHELYEEPLPSGGVVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCKLPCVYLVDSGGAFLPKQADVFPDKENFGRIFYNQAIMSAQGIPQIALVVGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGAAVHCKTSGVSDYFAQDEFHALALGRDIVKNLHMAGRDVSTNGLQNTSYEYKEPLYDVNELRSIAPTDLKQQFDIREVISRIVDGSEFDEFKKLYGTVRAYSLHFLPF*