AlfalfaGEDB | Msa0611320

M. sativa cultivar zhongmu-4 / Msa0611320

KEGG: K01969
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0019752 GO:0031974 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606
PFAM: PF01039.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611320	XP_003607956.1	98.251	343	6	0	1	343	1	343	0.0	700

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611320	sp\|Q9LDD8\|MCCB_ARATH	76.261	337	68	1	19	343	42	378	0.0	520

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611320	G7JL66	98.251	343	6	0	1	343	1	343	0.0	700

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028630	Msa0611320	0.817869	2.636778e-52	-8.615850e-47
Msa0578570	Msa0611320	0.875300	3.435354e-68	-8.615850e-47
Msa0586160	Msa0611320	0.803861	2.848114e-49	-8.615850e-47
Msa0611320	Msa0626180	0.805734	1.157106e-49	-8.615850e-47
Msa0611320	Msa0651620	0.980467	2.753891e-150	-8.615850e-47
Msa0611320	Msa0693950	0.971857	7.901441e-134	-8.615850e-47
Msa0611320	Msa1401550	0.803132	4.033973e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611320	MtrunA17_Chr4g0044751	98.251	343	6	0	1	343	1	343	0.0	700

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611320	AT4G34030.1	76.261	337	68	1	19	343	42	378	0.0	520

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Find 185 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACTATAATTGTTGG+TGG	0.528181	4_2:-59492442	Msa0611320:three_prime_UTR
AAATACAAGTTATGAGTATA+AGG	0.335328	4_2:-59493656	Msa0611320:CDS
AAATGACCCTACTGTTAAAG+GGG	0.615388	4_2:-59494441	Msa0611320:CDS
AACTGCTGCTTAAGATCGGT+AGG	0.556025	4_2:+59493595	None:intergenic
AAGAGCCTTTGCCTTCTGGT+GGG	0.506082	4_2:-59494514	Msa0611320:CDS
AAGATCTTTGGACAGCCTGT+AGG	0.611650	4_2:-59493253	Msa0611320:three_prime_UTR
AAGTATGTCTATCGGATCGG+AGG	0.618117	4_2:+59495896	None:intergenic
AAGTTGACATATGATCAGGA+AGG	0.735721	4_2:+59491729	None:intergenic
AATGACCCTACTGTTAAAGG+GGG	0.679889	4_2:-59494440	Msa0611320:CDS
AATGCTAGAATATCTGTGAT+GGG	0.621217	4_2:-59492349	Msa0611320:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCTTTCTTCTTCTAAGTAA+AGG	+	chr4_2:59491801-59491820	None:intergenic	30.0%
TAAACATGTTCTCTCTTCTA+TGG	+	chr4_2:59491834-59491853	None:intergenic	30.0%
TTCTCTTCTTGACAGTAAAT+TGG	+	chr4_2:59491890-59491909	None:intergenic	30.0%
TCAAGAAGAGAATTGTGTTT+GGG	-	chr4_2:59491898-59491917	Msa0611320:three_prime_UTR	30.0%
CAAGTAACTATTAGACTAGT+TGG	-	chr4_2:59492204-59492223	Msa0611320:three_prime_UTR	30.0%
TCATAGCTGAAAATAGCTTA+TGG	+	chr4_2:59492259-59492278	None:intergenic	30.0%
AATCCAACAAACATTTGACA+TGG	-	chr4_2:59492286-59492305	Msa0611320:intron	30.0%
TGACATTGCCTTAATATCTA+AGG	-	chr4_2:59492312-59492331	Msa0611320:intron	30.0%
TCGACATACCTTAGATATTA+AGG	+	chr4_2:59492323-59492342	None:intergenic	30.0%
TTGACCAATATATAAGTGAG+AGG	-	chr4_2:59492649-59492668	Msa0611320:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	59491696	59495944	59491696	ID=Msa0611320;Name=Msa0611320
chr4_2	mRNA	59491696	59495944	59491696	ID=Msa0611320-mRNA-1;Parent=Msa0611320;Name=Msa0611320-mRNA-1;_AED=0.19;_eAED=0.19;_QI=151\|1\|1\|1\|1\|0.87\|8\|1024\|353
chr4_2	exon	59491696	59492101	59491696	ID=Msa0611320-mRNA-1:exon:15813;Parent=Msa0611320-mRNA-1
chr4_2	exon	59492198	59492254	59492198	ID=Msa0611320-mRNA-1:exon:15812;Parent=Msa0611320-mRNA-1
chr4_2	exon	59492339	59492470	59492339	ID=Msa0611320-mRNA-1:exon:15811;Parent=Msa0611320-mRNA-1
chr4_2	exon	59492691	59492765	59492691	ID=Msa0611320-mRNA-1:exon:15810;Parent=Msa0611320-mRNA-1
chr4_2	exon	59493132	59493763	59493132	ID=Msa0611320-mRNA-1:exon:15809;Parent=Msa0611320-mRNA-1
chr4_2	exon	59493866	59493956	59493866	ID=Msa0611320-mRNA-1:exon:15808;Parent=Msa0611320-mRNA-1
chr4_2	exon	59494124	59494558	59494124	ID=Msa0611320-mRNA-1:exon:15807;Parent=Msa0611320-mRNA-1
chr4_2	exon	59495536	59495944	59495536	ID=Msa0611320-mRNA-1:exon:15806;Parent=Msa0611320-mRNA-1
chr4_2	five_prime_UTR	59495794	59495944	59495794	ID=Msa0611320-mRNA-1:five_prime_utr;Parent=Msa0611320-mRNA-1
chr4_2	CDS	59495536	59495793	59495536	ID=Msa0611320-mRNA-1:cds;Parent=Msa0611320-mRNA-1
chr4_2	CDS	59494124	59494558	59494124	ID=Msa0611320-mRNA-1:cds;Parent=Msa0611320-mRNA-1
chr4_2	CDS	59493866	59493956	59493866	ID=Msa0611320-mRNA-1:cds;Parent=Msa0611320-mRNA-1
chr4_2	CDS	59493486	59493763	59493486	ID=Msa0611320-mRNA-1:cds;Parent=Msa0611320-mRNA-1
chr4_2	three_prime_UTR	59493132	59493485	59493132	ID=Msa0611320-mRNA-1:three_prime_utr;Parent=Msa0611320-mRNA-1
chr4_2	three_prime_UTR	59492691	59492765	59492691	ID=Msa0611320-mRNA-1:three_prime_utr;Parent=Msa0611320-mRNA-1
chr4_2	three_prime_UTR	59492339	59492470	59492339	ID=Msa0611320-mRNA-1:three_prime_utr;Parent=Msa0611320-mRNA-1
chr4_2	three_prime_UTR	59492198	59492254	59492198	ID=Msa0611320-mRNA-1:three_prime_utr;Parent=Msa0611320-mRNA-1
chr4_2	three_prime_UTR	59491696	59492101	59491696	ID=Msa0611320-mRNA-1:three_prime_utr;Parent=Msa0611320-mRNA-1

Gene Sequence

>Msa0611320

ATGTTTAAACTAATTGGAAGAAAATCAAGTTGGATACCCTCCAATTTACTGTCAAGAAGAGAATTGTGTTTGGGTGCCCTTCCTAATGGCGGAGCTATGGAACACTTGATCACTCAACTCCAATCTCATGTTCATAAGGTTCTTGCTGGTGGTGGACCCGAAGCTGTGAAAAGGAATAGTAGTAGAAATAAGCTTTTACCAAGAGAAAGAATTGATCGTCTACTTGATCCTGGTTCTTCTTTCCTTGAGCTTTCACAGCTTGCAGGACACGAGTTGTATGAAGAGCCTTTGCCTTCTGGTGGGGTTGTGACTGGGATCGGTCCAGTGCATGGCCGACTTTGTATGTTTGTGGCAAATGACCCTACTGTTAAAGGGGGGACTTATTATCCTATTACAGTTAAGAAACATCTCAGAGCACAGGAGATTGCGGCTCAATGCAAATTGCCGTGTGTGTATCTTGTTGACAGTGGTGGTGCTTTCCTTCCCAAGCAGGCTGATGTCTTTCCGGATAAGGAAAATTTTGGTAGAATATTCTATAACCAGGCTATAATGTCTGCTCAAGGGATTCCCCAAATTGCATTGGTGGTAGGCTCTTGCACTGCTGGCGGTGCCTATATACCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACTATTTTTTTAGCAGGGCCCCCTCTTGTTAAGGCTGCTACTGGAGAAGAAGTCTCTGCGGAGGATTTGGGAGGTGCTGCAGTACACTGCAAGACTTCGGGTGTTTCAGACTATTTTGCTCAAGATGAATTTCATGCTCTTGCACTTGGGAGGGACATCGTCAAGAATTTGCATATGGCTGGGAGAGATGTCTCGACAAATGGATTGCAAAATACAAGTTATGAGTATAAGGAGCCACTATATGATGTCAATGAACTTCGTTCTATTGCCCCTACCGATCTTAAGCAGCAGTTTGATATCCGAGAAGTGATTTCTCGCATTGTTGACGGAAGTGAATTTGATGAATTCAAGAAACTGTATGGCACTGTGAGGGCTTATTCACTTCACTTTCTACCGTTTTAA

Protein sequence

>Msa0611320

MFKLIGRKSSWIPSNLLSRRELCLGALPNGGAMEHLITQLQSHVHKVLAGGGPEAVKRNSSRNKLLPRERIDRLLDPGSSFLELSQLAGHELYEEPLPSGGVVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCKLPCVYLVDSGGAFLPKQADVFPDKENFGRIFYNQAIMSAQGIPQIALVVGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGAAVHCKTSGVSDYFAQDEFHALALGRDIVKNLHMAGRDVSTNGLQNTSYEYKEPLYDVNELRSIAPTDLKQQFDIREVISRIVDGSEFDEFKKLYGTVRAYSLHFLPF*