AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693950 MtrunA17_Chr4g0044751 98.251 343 6 0 1 343 1 343 0.0 702
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693950 AT4G34030.1 76.331 338 68 1 18 343 41 378 0.0 521

Find 185 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTAAATACACCATATT+TGG 0.155301 4_4:+63210670 None:intergenic
GAAAACATGTTTAAACTAAT+TGG 0.177202 4_4:-63214547 Msa0693950:exon
GCAAATGACCCTACTGTTAA+AGG 0.206882 4_4:-63213212 Msa0693950:CDS
CCTTCTGGTGGGGTTGTGAC+TGG 0.207802 4_4:-63213272 Msa0693950:CDS
TTCTCTTCTTAACAGTAAAT+TGG 0.209129 4_4:+63214501 None:intergenic
GGACAGCCTGTAGGAATTAT+TGG 0.229562 4_4:-63212013 Msa0693950:three_prime_UTR
AGCCTACCACCAATGCAATT+TGG 0.232537 4_4:+63212994 None:intergenic
TTTCCGGATAAGGAAAATTT+TGG 0.235219 4_4:-63213062 Msa0693950:CDS
CGGGTTTCACAATGAATATT+TGG 0.241606 4_4:-63212137 Msa0693950:three_prime_UTR
GCCTACCACCAATGCAATTT+GGG 0.252766 4_4:+63212995 None:intergenic
CAAGCAGGCTGATGTCTTTC+CGG 0.257827 4_4:-63213078 Msa0693950:CDS
AGAAGTCTCTGCGGAGGATT+TGG 0.263617 4_4:-63212689 Msa0693950:CDS
TATGAAGAGCCTTTGCCTTC+TGG 0.275232 4_4:-63213287 Msa0693950:CDS
AGATGTTTCTTAACTGTAAT+AGG 0.281386 4_4:+63213176 None:intergenic
ATGAGTTGACAGACCTTTAT+CGG 0.298219 4_4:-63212171 Msa0693950:three_prime_UTR
ACAAATCTACATTAGACTTT+AGG 0.301393 4_4:+63210600 None:intergenic
CTGCACATAGATTTCAAATA+AGG 0.305925 4_4:+63212066 None:intergenic
GCGACAGAAAATACCAAATA+TGG 0.306791 4_4:-63210683 Msa0693950:three_prime_UTR
TGAGTGAATATGAAGCTTGC+AGG 0.334512 4_4:-63213320 Msa0693950:intron
AAATACAAGTTATGAGTATA+AGG 0.335328 4_4:-63212425 Msa0693950:CDS
TTACTCAACGGCGAGGCTTT+GGG 0.338797 4_4:-63210777 Msa0693950:three_prime_UTR
ATTACTCAACGGCGAGGCTT+TGG 0.339622 4_4:-63210778 Msa0693950:three_prime_UTR
AGCCTCGCCGTTGAGTAATA+AGG 0.347863 4_4:+63210782 None:intergenic
CTGTCAACTCATCAAGCTTC+AGG 0.351217 4_4:+63212182 None:intergenic
TCAGAACATCACCGGATTCA+TGG 0.364972 4_4:-63211900 Msa0693950:intron
GTCCGAACTTCATGTTCCTT+TGG 0.370909 4_4:-63211144 Msa0693950:three_prime_UTR
TTCTTTCCTTGAGCTTTCAC+AGG 0.384052 4_4:-63214305 Msa0693950:intron
CATGTTCATAAGGTTCTTGC+TGG 0.385373 4_4:-63214415 Msa0693950:CDS
TGTTTGGGTGCCCTTCCTAA+TGG 0.386494 4_4:-63214475 Msa0693950:CDS
GTGGTAGGCTCTTGCACTGC+TGG 0.388796 4_4:-63212981 Msa0693950:CDS
TATGTGCAGACTCTTGTAAC+AGG 0.393966 4_4:-63212052 Msa0693950:three_prime_UTR
TACAGCTTGCTGCATATACT+TGG 0.397938 4_4:+63212108 None:intergenic
CTTCTGGTGGGGTTGTGACT+GGG 0.408731 4_4:-63213271 Msa0693950:CDS
GGCTGATGTCTTTCCGGATA+AGG 0.409916 4_4:-63213072 Msa0693950:CDS
CGAAAACCAACAACCGATAA+AGG 0.413437 4_4:+63212158 None:intergenic
TGGTGCTTTCCTTCCCAAGC+AGG 0.414000 4_4:-63213093 Msa0693950:CDS
CAAATGACCCTACTGTTAAA+GGG 0.415811 4_4:-63213211 Msa0693950:CDS
GCAGTACACTGCAAGACTTC+GGG 0.417609 4_4:-63212658 Msa0693950:CDS
GTCTGTGATGGGTGGTGCTC+AGG 0.419162 4_4:-63211107 Msa0693950:intron
GAAGTCTCTGCGGAGGATTT+GGG 0.419494 4_4:-63212688 Msa0693950:CDS
TGTTCCATAGCTCCGCCATT+AGG 0.421284 4_4:+63214460 None:intergenic
AGACGATCAATTCTTTCTCT+TGG 0.423934 4_4:+63214343 None:intergenic
ATAATTGTTGGTGGAAGCTT+TGG 0.424489 4_4:-63211202 Msa0693950:three_prime_UTR
GAATTTCATGCTCTTGCACT+TGG 0.426359 4_4:-63212508 Msa0693950:CDS
GAGAGGTGGGAGAGGTTGAA+TGG 0.429245 4_4:-63210566 Msa0693950:three_prime_UTR
TTTAATTCATACCATGAATC+CGG 0.429251 4_4:+63211889 None:intergenic
GATGAATTCAAGAAACTGTA+TGG 0.435673 4_4:-63212295 Msa0693950:CDS
GTCAAGAATTTGCATATGGC+TGG 0.436817 4_4:-63212475 Msa0693950:CDS
CGGAAAGACATCAGCCTGCT+TGG 0.437839 4_4:+63213079 None:intergenic
GAACATGAAGTTCGGACTAT+AGG 0.440234 4_4:+63211150 None:intergenic
ACCTTTCTTCTTCTAAGTAA+AGG 0.442877 4_4:+63214590 None:intergenic
CTTGACCATCACACTTTCAT+CGG 0.444386 4_4:+63212935 None:intergenic
GCCTTTACTTAGAAGAAGAA+AGG 0.447297 4_4:-63214591 Msa0693950:five_prime_UTR
CATAAGGTTCTTGCTGGTGG+TGG 0.450736 4_4:-63214409 Msa0693950:CDS
GACAGACCTTTATCGGTTGT+TGG 0.452410 4_4:-63212164 Msa0693950:three_prime_UTR
GAACCTTATGAACATGAGAT+TGG 0.456065 4_4:+63214422 None:intergenic
GGTGGGGTTGTGACTGGGAT+CGG 0.456548 4_4:-63213266 Msa0693950:CDS
CCTAAAATCACTATAATTGT+TGG 0.457203 4_4:-63211214 Msa0693950:three_prime_UTR
TCAATGAATCGGCTCTGAAA+GGG 0.459441 4_4:-63211973 Msa0693950:three_prime_UTR
ACGGCGAGGCTTTGGGATGA+TGG 0.460924 4_4:-63210770 Msa0693950:three_prime_UTR
CTAATGTAGATTTGTTTACA+TGG 0.461783 4_4:-63210592 Msa0693950:three_prime_UTR
ACTCCAATCTCATGTTCATA+AGG 0.464137 4_4:-63214425 Msa0693950:CDS
GGGAGAGATGTCTCGACAAA+TGG 0.464683 4_4:-63212454 Msa0693950:CDS
TTAAGAAGAGAATTGTGTTT+GGG 0.465861 4_4:-63214490 Msa0693950:CDS
GTCTTTCTTCAGAACATCAC+CGG 0.466141 4_4:-63211908 Msa0693950:three_prime_UTR
GTTAAGAAGAGAATTGTGTT+TGG 0.468170 4_4:-63214491 Msa0693950:CDS
CAATGCGAGAAATCACTTCT+CGG 0.469080 4_4:+63212335 None:intergenic
ATCGGCCATAGCAGGTATAT+AGG 0.469640 4_4:+63212953 None:intergenic
TGGCCGACTTTGTATGTTTG+TGG 0.474171 4_4:-63213234 Msa0693950:CDS
TTGTTTCCAATAATTCCTAC+AGG 0.474318 4_4:+63212007 None:intergenic
TTGACATTATAGGCTGCTAC+TGG 0.479167 4_4:-63212715 Msa0693950:intron
CATAAATACAATGATTAAAA+CGG 0.483150 4_4:+63212241 None:intergenic
CATGGGAAGAGAGGTGGGAG+AGG 0.485320 4_4:-63210574 Msa0693950:three_prime_UTR
GTTTACATGGGAAGAGAGGT+GGG 0.489753 4_4:-63210579 Msa0693950:three_prime_UTR
GGAAAGACATCAGCCTGCTT+GGG 0.489867 4_4:+63213080 None:intergenic
GATAATATTCATCAGGCTGC+TGG 0.490449 4_4:-63211016 Msa0693950:intron
GCAAATGGCATAGCAAAGTC+AGG 0.491642 4_4:-63211494 Msa0693950:three_prime_UTR
GCTGATACAAGAAAAGTGAT+TGG 0.495102 4_4:-63210734 Msa0693950:three_prime_UTR
TGCAGTACACTGCAAGACTT+CGG 0.495679 4_4:-63212659 Msa0693950:CDS
GTGATTTCTCGCATTGTTGA+CGG 0.495714 4_4:-63212328 Msa0693950:CDS
ATACAAAGTCGGCCATGCAC+TGG 0.497636 4_4:+63213242 None:intergenic
ATCACAGACATTCTAGCATT+AGG 0.498134 4_4:+63211121 None:intergenic
CATCGTCAAGAATTTGCATA+TGG 0.498312 4_4:-63212479 Msa0693950:CDS
CTTTGCTATGCCATTTGCCT+CGG 0.499152 4_4:+63211499 None:intergenic
TTGCAAGTTGACATATGATC+AGG 0.499699 4_4:+63210494 None:intergenic
ATTGATCGTCTACTTGATCC+TGG 0.501793 4_4:-63214331 Msa0693950:CDS
GAAGAGCCTTTGCCTTCTGG+TGG 0.501882 4_4:-63213284 Msa0693950:CDS
ATTTGTTTACATGGGAAGAG+AGG 0.504374 4_4:-63210583 Msa0693950:three_prime_UTR
AAGAGCCTTTGCCTTCTGGT+GGG 0.506082 4_4:-63213283 Msa0693950:CDS
TGTTTACATGGGAAGAGAGG+TGG 0.506141 4_4:-63210580 Msa0693950:three_prime_UTR
GGCTCAAAATCCGAGGCAAA+TGG 0.507106 4_4:-63211509 Msa0693950:three_prime_UTR
GATTCCCCAAATTGCATTGG+TGG 0.511734 4_4:-63213000 Msa0693950:CDS
TCTTCTTAACAGTAAATTGG+AGG 0.513083 4_4:+63214504 None:intergenic
CCTTCCTAATGGCGGAGCTA+TGG 0.518394 4_4:-63214464 Msa0693950:CDS
TTCAATGAATCGGCTCTGAA+AGG 0.519323 4_4:-63211974 Msa0693950:three_prime_UTR
TAAGAAACATCTCAGAGCAC+AGG 0.521326 4_4:-63213165 Msa0693950:CDS
GGCCAAAGGAACATGAAGTT+CGG 0.521966 4_4:+63211142 None:intergenic
TTCATGCTCTTGCACTTGGG+AGG 0.526100 4_4:-63212504 Msa0693950:CDS
AAAATCACTATAATTGTTGG+TGG 0.528181 4_4:-63211211 Msa0693950:three_prime_UTR
CCATAGCTCCGCCATTAGGA+AGG 0.529576 4_4:+63214464 None:intergenic
AGACATCAGCCTGCTTGGGA+AGG 0.531693 4_4:+63213084 None:intergenic
GTTGGTGGAAGCTTTGGTGC+TGG 0.534371 4_4:-63211196 Msa0693950:three_prime_UTR
AGTGTGATGGTCAAGGGAAA+TGG 0.534494 4_4:-63212927 Msa0693950:CDS
TACTCAACGTAACATTCCCT+TGG 0.534828 4_4:-63211930 Msa0693950:three_prime_UTR
ATCCGATAGACATACTTAGC+TGG 0.539877 4_4:-63214660 Msa0693950:five_prime_UTR
GTTGAGGCGTATGAGAGAGA+AGG 0.540040 4_4:-63210809 Msa0693950:three_prime_UTR
ACAGTGGAACAAGGAAGAAG+AGG 0.540270 4_4:-63210852 Msa0693950:intron
AGAGCCTTTGCCTTCTGGTG+GGG 0.540577 4_4:-63213282 Msa0693950:CDS
AATTGGAAGAAAATCAAGTT+GGG 0.540944 4_4:-63214530 Msa0693950:CDS
GTGGACCCGAAGCTGTGAAA+AGG 0.541444 4_4:-63214390 Msa0693950:CDS
GTTCTGTCTCAAATAGAGAA+AGG 0.541605 4_4:-63210992 Msa0693950:three_prime_UTR
TCATGCTCTTGCACTTGGGA+GGG 0.542037 4_4:-63212503 Msa0693950:CDS
TAATTGGAAGAAAATCAAGT+TGG 0.542509 4_4:-63214531 Msa0693950:CDS
AGGGATTCCCCAAATTGCAT+TGG 0.545998 4_4:-63213003 Msa0693950:CDS
CAGGCTATAATGTCTGCTCA+AGG 0.547634 4_4:-63213023 Msa0693950:CDS
TAATGCTAGAATGTCTGTGA+TGG 0.550022 4_4:-63211119 Msa0693950:three_prime_UTR
ACTGGGATCGGTCCAGTGCA+TGG 0.555718 4_4:-63213254 Msa0693950:CDS
AACTGCTGCTTAAGATCGGT+AGG 0.556025 4_4:+63212364 None:intergenic
TGGTAGAATATTCTATAACC+AGG 0.556699 4_4:-63213042 Msa0693950:CDS
GTAGGAATTATTGGAAACAA+TGG 0.557477 4_4:-63212004 Msa0693950:three_prime_UTR
ATCAAACTGCTGCTTAAGAT+CGG 0.557686 4_4:+63212360 None:intergenic
AGTTCATTGACATCATATAG+TGG 0.558008 4_4:+63212400 None:intergenic
CGGTGCCTATATACCTGCTA+TGG 0.565180 4_4:-63212958 Msa0693950:CDS
TGTCTATCGGATCGGAGGGA+TGG 0.566042 4_4:+63214671 None:intergenic
AATTTCATGCTCTTGCACTT+GGG 0.567442 4_4:-63212507 Msa0693950:CDS
ACACTTTCATCGGCCATAGC+AGG 0.567737 4_4:+63212945 None:intergenic
TAAGAACCTGTGAAAGCTCA+AGG 0.569308 4_4:+63214299 None:intergenic
CTTCTTAACAGTAAATTGGA+GGG 0.574075 4_4:+63214505 None:intergenic
CTTGAGCAGACATTATAGCC+TGG 0.579349 4_4:+63213024 None:intergenic
TCAAGAATTTGCATATGGCT+GGG 0.580272 4_4:-63212474 Msa0693950:CDS
GTTCATAAGGTTCTTGCTGG+TGG 0.580761 4_4:-63214412 Msa0693950:CDS
CCCCAAATTGCATTGGTGGT+AGG 0.581932 4_4:-63212996 Msa0693950:CDS
CGATGAAAGTGTGATGGTCA+AGG 0.582644 4_4:-63212934 Msa0693950:CDS
TTCCAGCTAAGTATGTCTAT+CGG 0.583980 4_4:+63214658 None:intergenic
CTGCTGCTTAAGATCGGTAG+GGG 0.584025 4_4:+63212366 None:intergenic
GTAGGCTCTTGCACTGCTGG+CGG 0.586542 4_4:-63212978 Msa0693950:CDS
TGGAGCTGACCTTAACAAGA+GGG 0.589538 4_4:+63212883 None:intergenic
ACTGCTGCTTAAGATCGGTA+GGG 0.591481 4_4:+63212365 None:intergenic
AGGCTATAATGTCTGCTCAA+GGG 0.594394 4_4:-63213022 Msa0693950:CDS
CAATGAATCGGCTCTGAAAG+GGG 0.595804 4_4:-63211972 Msa0693950:three_prime_UTR
AATGCTAGAATGTCTGTGAT+GGG 0.600319 4_4:-63211118 Msa0693950:three_prime_UTR
TTTATGTGAATGTGTTGCCA+TGG 0.601437 4_4:-63212224 Msa0693950:three_prime_UTR
TAATGTAGATTTGTTTACAT+GGG 0.605979 4_4:-63210591 Msa0693950:three_prime_UTR
GATGAAAGTGTGATGGTCAA+GGG 0.606022 4_4:-63212933 Msa0693950:CDS
GTTCAAAGCGAAAGTAGTTG+AGG 0.608997 4_4:-63210825 Msa0693950:three_prime_UTR
AAGATCTTTGGACAGCCTGT+AGG 0.611650 4_4:-63212022 Msa0693950:three_prime_UTR
GGCAAGAATTAATAATGCCG+TGG 0.613791 4_4:+63214611 None:intergenic
AAATGACCCTACTGTTAAAG+GGG 0.615388 4_4:-63213210 Msa0693950:CDS
ACATTCTAGCATTAGGCCAA+AGG 0.617035 4_4:+63211128 None:intergenic
AAGTATGTCTATCGGATCGG+AGG 0.618117 4_4:+63214666 None:intergenic
CCAGTCACAACCCCACCAGA+AGG 0.618817 4_4:+63213272 None:intergenic
CATAGCTCCGCCATTAGGAA+GGG 0.621393 4_4:+63214465 None:intergenic
TCTCAGAGCACAGGAGATTG+CGG 0.623049 4_4:-63213156 Msa0693950:CDS
AGCAGAGTTCAATGACTCCA+CGG 0.624090 4_4:-63214628 Msa0693950:five_prime_UTR
GAGCTGACCTTAACAAGAGG+GGG 0.626239 4_4:+63212885 None:intergenic
GCTAAGTATGTCTATCGGAT+CGG 0.627336 4_4:+63214663 None:intergenic
GGTTATAATACAGTGGAACA+AGG 0.634491 4_4:-63210861 Msa0693950:intron
TTGGGTGCCCTTCCTAATGG+CGG 0.634839 4_4:-63214472 Msa0693950:CDS
GAAACTGTATGGCACTGTGA+GGG 0.635294 4_4:-63212284 Msa0693950:CDS
CTGGAGCTGACCTTAACAAG+AGG 0.642396 4_4:+63212882 None:intergenic
AGGAAGTCCTTATTACTCAA+CGG 0.644858 4_4:-63210789 Msa0693950:three_prime_UTR
AGCTCAAGGAAAGAAGAACC+AGG 0.646634 4_4:+63214313 None:intergenic
AGTATGTCTATCGGATCGGA+GGG 0.646781 4_4:+63214667 None:intergenic
GATGTTCTGAAGAAAGACCA+AGG 0.657231 4_4:+63211913 None:intergenic
TTGCCACAAACATACAAAGT+CGG 0.657316 4_4:+63213231 None:intergenic
GTGTATCTTGTTGACAGTGG+TGG 0.659457 4_4:-63213113 Msa0693950:CDS
ATGTTCTGAAGAAAGACCAA+GGG 0.671246 4_4:+63211914 None:intergenic
GTCTCTGCGGAGGATTTGGG+AGG 0.673290 4_4:-63212685 Msa0693950:CDS
TGGAGAAGAAGTCTCTGCGG+AGG 0.674342 4_4:-63212695 Msa0693950:CDS
AATGACCCTACTGTTAAAGG+GGG 0.679889 4_4:-63213209 Msa0693950:CDS
GTCCTTATTACTCAACGGCG+AGG 0.680927 4_4:-63210784 Msa0693950:three_prime_UTR
GGAGCTGACCTTAACAAGAG+GGG 0.682710 4_4:+63212884 None:intergenic
ACAACCCCACCAGAAGGCAA+AGG 0.683577 4_4:+63213278 None:intergenic
GTAGGTGGGCTCAAAATCCG+AGG 0.686992 4_4:-63211516 Msa0693950:intron
CTGTCAACAAGATACACACA+CGG 0.687428 4_4:+63213119 None:intergenic
GCTAGAATGTCTGTGATGGG+TGG 0.688843 4_4:-63211115 Msa0693950:three_prime_UTR
GATGGCTGTATCTTGCGCAA+AGG 0.692151 4_4:-63211459 Msa0693950:intron
AGAAACTGTATGGCACTGTG+AGG 0.693839 4_4:-63212285 Msa0693950:CDS
CCTACCACCAATGCAATTTG+GGG 0.702673 4_4:+63212996 None:intergenic
TATGGCCGATGAAAGTGTGA+TGG 0.707459 4_4:-63212940 Msa0693950:CDS
TACTGGAGAAGAAGTCTCTG+CGG 0.708370 4_4:-63212698 Msa0693950:CDS
GCTGGAAACTATGCAATGTG+TGG 0.713945 4_4:-63211178 Msa0693950:three_prime_UTR
TGTGTGTATCTTGTTGACAG+TGG 0.716426 4_4:-63213116 Msa0693950:CDS
ATGACCCTACTGTTAAAGGG+GGG 0.731933 4_4:-63213208 Msa0693950:CDS
AAGTTGACATATGATCAGGA+AGG 0.735721 4_4:+63210498 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTTTTATTAACTTTA+TGG - chr4_4:63210904-63210923 Msa0693950:intron 10.0%
!!! ATGAATTAAAAAAATTTGTT+TGG - chr4_4:63213281-63213300 Msa0693950:CDS 10.0%
!! AAATTGTAGTATATTTATAA+AGG - chr4_4:63213877-63213896 Msa0693950:intron 10.0%
!!! AGTTATCTAACATAATTTTA+TGG + chr4_4:63211207-63211226 None:intergenic 15.0%
!!! AATACATCAAATTCTTTTTA+TGG - chr4_4:63211625-63211644 Msa0693950:intron 15.0%
!!! ATACATCAAATTCTTTTTAT+GGG - chr4_4:63211626-63211645 Msa0693950:intron 15.0%
!! TTCAGTTTATCATAAAATAT+AGG + chr4_4:63211677-63211696 None:intergenic 15.0%
!! CATAAATACAATGATTAAAA+CGG + chr4_4:63212919-63212938 None:intergenic 15.0%
!! AATATAAAAATAAAGTTCCA+TGG + chr4_4:63212953-63212972 None:intergenic 15.0%
!! TTTATCTTGTGATAAATTAA+TGG - chr4_4:63214244-63214263 Msa0693950:intron 15.0%
!! ACAAACAAAAATATGTAAAA+GGG - chr4_4:63214618-63214637 Msa0693950:five_prime_UTR 15.0%
!! GAAAACATGTTTAAACTAAT+TGG - chr4_4:63210610-63210629 Msa0693950:three_prime_UTR 20.0%
!! AACATAAAAAGTAGTAGTAA+TGG + chr4_4:63210891-63210910 None:intergenic 20.0%
!! TGAAAACAACTTATAACTTA+CGG - chr4_4:63211229-63211248 Msa0693950:intron 20.0%
!! ATATATGATATAAGTGTCTA+TGG + chr4_4:63211301-63211320 None:intergenic 20.0%
!!! TTTAGACAAACAAATTTGTT+GGG + chr4_4:63211551-63211570 None:intergenic 20.0%
!! ATTTAGACAAACAAATTTGT+TGG + chr4_4:63211552-63211571 None:intergenic 20.0%
!! TTTGTATTTACCATTCATTT+GGG - chr4_4:63211719-63211738 Msa0693950:intron 20.0%
!! AGAAATGAGAAATACAAAAA+TGG - chr4_4:63211780-63211799 Msa0693950:intron 20.0%
!! AGAAAATACATTATCACAAA+CGG + chr4_4:63212390-63212409 None:intergenic 20.0%
!! CATTAATTGATTGACATTAT+AGG - chr4_4:63212432-63212451 Msa0693950:CDS 20.0%
!! AAATACAAGTTATGAGTATA+AGG - chr4_4:63212732-63212751 Msa0693950:intron 20.0%
!!! TGGAATTTTATTCAATGAAT+CGG - chr4_4:63213173-63213192 Msa0693950:CDS 20.0%
!!! TTTAACAATTCTTGATTTGA+GGG + chr4_4:63213522-63213541 None:intergenic 20.0%
!! TGTTTATAGAAAGAATATCT+AGG + chr4_4:63213545-63213564 None:intergenic 20.0%
!!! ATTAGTTGATAATATTCATC+AGG - chr4_4:63214134-63214153 Msa0693950:intron 20.0%
!! TCAGGTAAAAATATTGTTAT+TGG - chr4_4:63214209-63214228 Msa0693950:intron 20.0%
!!! CAGGTAAAAATATTGTTATT+GGG - chr4_4:63214210-63214229 Msa0693950:intron 20.0%
!!! TAATGTAGATTTGTTTACAT+GGG - chr4_4:63214566-63214585 Msa0693950:five_prime_UTR 20.0%
!! GACAAACAAAAATATGTAAA+AGG - chr4_4:63214617-63214636 Msa0693950:five_prime_UTR 20.0%
!! TAAACATGTTTTCTCTTCTA+TGG + chr4_4:63210603-63210622 None:intergenic 25.0%
! TAATTGGAAGAAAATCAAGT+TGG - chr4_4:63210626-63210645 Msa0693950:three_prime_UTR 25.0%
! AATTGGAAGAAAATCAAGTT+GGG - chr4_4:63210627-63210646 Msa0693950:three_prime_UTR 25.0%
! TTCTCTTCTTAACAGTAAAT+TGG + chr4_4:63210659-63210678 None:intergenic 25.0%
! TTAAGAAGAGAATTGTGTTT+GGG - chr4_4:63210667-63210686 Msa0693950:three_prime_UTR 25.0%
!!! ATGTCGAAAAAAAGTGTTTT+TGG - chr4_4:63211105-63211124 Msa0693950:intron 25.0%
!! GTAAATACAAAGAGTATGTT+TGG + chr4_4:63211710-63211729 None:intergenic 25.0%
! CTTTGTATTTACCATTCATT+TGG - chr4_4:63211718-63211737 Msa0693950:intron 25.0%
! AGATGTTTCTTAACTGTAAT+AGG + chr4_4:63211984-63212003 None:intergenic 25.0%
! TAGTTTCACATAAAGGATAT+TGG + chr4_4:63212319-63212338 None:intergenic 25.0%
! TTTAATTCATACCATGAATC+CGG + chr4_4:63213271-63213290 None:intergenic 25.0%
!! GTTTAACAATTCTTGATTTG+AGG + chr4_4:63213523-63213542 None:intergenic 25.0%
! AACTATAACACATGTCTATT+TGG - chr4_4:63213619-63213638 Msa0693950:intron 25.0%
!! CCAACAATTATAGTGATTTT+AGG + chr4_4:63213946-63213965 None:intergenic 25.0%
! CCTAAAATCACTATAATTGT+TGG - chr4_4:63213943-63213962 Msa0693950:intron 25.0%
! AAAATCACTATAATTGTTGG+TGG - chr4_4:63213946-63213965 Msa0693950:intron 25.0%
! ATTTGTCTCAATGTATATCA+TGG - chr4_4:63214275-63214294 Msa0693950:intron 25.0%
! ATATCATGGTTATAATACAG+TGG - chr4_4:63214289-63214308 Msa0693950:intron 25.0%
! CATTCTAAATACACCATATT+TGG + chr4_4:63214490-63214509 None:intergenic 25.0%
! ACAAATCTACATTAGACTTT+AGG + chr4_4:63214560-63214579 None:intergenic 25.0%
!! CTAATGTAGATTTGTTTACA+TGG - chr4_4:63214565-63214584 Msa0693950:five_prime_UTR 25.0%
ACCTTTCTTCTTCTAAGTAA+AGG + chr4_4:63210570-63210589 None:intergenic 30.0%
CTTCTTAACAGTAAATTGGA+GGG + chr4_4:63210655-63210674 None:intergenic 30.0%
TCTTCTTAACAGTAAATTGG+AGG + chr4_4:63210656-63210675 None:intergenic 30.0%
GTTAAGAAGAGAATTGTGTT+TGG - chr4_4:63210666-63210685 Msa0693950:three_prime_UTR 30.0%
CAAGTAACTATTAGACTAGT+TGG - chr4_4:63210973-63210992 Msa0693950:three_prime_UTR 30.0%
TCATAGCTGAAAATAGCTTA+TGG + chr4_4:63211028-63211047 None:intergenic 30.0%
AATCCAACAAACATTTGACA+TGG - chr4_4:63211055-63211074 Msa0693950:intron 30.0%
TGACATTGCCTTAATATCTA+AGG - chr4_4:63211081-63211100 Msa0693950:intron 30.0%
TCGACATACCTTAGATATTA+AGG + chr4_4:63211092-63211111 None:intergenic 30.0%
!! ATTCATTTTTCCTCCAATGT+AGG + chr4_4:63211390-63211409 None:intergenic 30.0%
TTGACCAATATATAAGTGAG+AGG - chr4_4:63211418-63211437 Msa0693950:intron 30.0%
!! ACCTAAAACTTTGAGACATT+GGG + chr4_4:63211453-63211472 None:intergenic 30.0%
!! TACCTAAAACTTTGAGACAT+TGG + chr4_4:63211454-63211473 None:intergenic 30.0%
!!! CAAAGTTTTAGGTAAAGATG+TGG - chr4_4:63211460-63211479 Msa0693950:three_prime_UTR 30.0%
ATTGCTACACATAACTGTTT+AGG - chr4_4:63211572-63211591 Msa0693950:intron 30.0%
TTGTGTGTTTATCTCAAGAA+AGG - chr4_4:63211804-63211823 Msa0693950:intron 30.0%
! TTTCCGGATAAGGAAAATTT+TGG - chr4_4:63212095-63212114 Msa0693950:three_prime_UTR 30.0%
! CTACCAAAATTTTCCTTATC+CGG + chr4_4:63212101-63212120 None:intergenic 30.0%
TGGTAGAATATTCTATAACC+AGG - chr4_4:63212115-63212134 Msa0693950:three_prime_UTR 30.0%
!!! AATGGCACTATTTTTTTAGC+AGG - chr4_4:63212248-63212267 Msa0693950:exon 30.0%
!!! ATGGCACTATTTTTTTAGCA+GGG - chr4_4:63212249-63212268 Msa0693950:exon 30.0%
ATCCTTTATGTGAAACTATC+TGG - chr4_4:63212321-63212340 Msa0693950:CDS 30.0%
!! TATTTTGCTCAAGGTATTTG+TGG - chr4_4:63212532-63212551 Msa0693950:intron 30.0%
AGTTCATTGACATCATATAG+TGG + chr4_4:63212760-63212779 None:intergenic 30.0%
GATGAATTCAAGAAACTGTA+TGG - chr4_4:63212862-63212881 Msa0693950:intron 30.0%
CTGCACATAGATTTCAAATA+AGG + chr4_4:63213094-63213113 None:intergenic 30.0%
TTGTTTCCAATAATTCCTAC+AGG + chr4_4:63213153-63213172 None:intergenic 30.0%
GTAGGAATTATTGGAAACAA+TGG - chr4_4:63213153-63213172 Msa0693950:CDS 30.0%
AGTTAATGTCATCCATCATT+TGG - chr4_4:63213414-63213433 Msa0693950:intron 30.0%
CAACAACTATGACTGTAATT+AGG + chr4_4:63213443-63213462 None:intergenic 30.0%
TTGTCTGGAAATGATTAGAA+TGG - chr4_4:63213460-63213479 Msa0693950:intron 30.0%
ACAAATTTGAGCTAAGATGT+TGG - chr4_4:63213562-63213581 Msa0693950:intron 30.0%
! TTTTCATCAAACTACTAGCA+GGG + chr4_4:63213595-63213614 None:intergenic 30.0%
! TTTTTCATCAAACTACTAGC+AGG + chr4_4:63213596-63213615 None:intergenic 30.0%
ATAACACATGTCTATTTGGT+AGG - chr4_4:63213623-63213642 Msa0693950:intron 30.0%
GAATGTTATAAATAGTGTGC+TGG + chr4_4:63213734-63213753 None:intergenic 30.0%
CATGATTCCTTACAAATTAC+TGG - chr4_4:63214090-63214109 Msa0693950:intron 30.0%
AAAGGCAATAAGAAAAAGCA+AGG - chr4_4:63214183-63214202 Msa0693950:intron 30.0%
TAAGAAAAAGCAAGGAATTC+AGG - chr4_4:63214191-63214210 Msa0693950:intron 30.0%
! AAATATTGTTATTGGGAGCA+AGG - chr4_4:63214217-63214236 Msa0693950:intron 30.0%
TTCCAGCTAAGTATGTCTAT+CGG + chr4_4:63210502-63210521 None:intergenic 35.0%
GCCTTTACTTAGAAGAAGAA+AGG - chr4_4:63210566-63210585 Msa0693950:three_prime_UTR 35.0%
ACTCCAATCTCATGTTCATA+AGG - chr4_4:63210732-63210751 Msa0693950:three_prime_UTR 35.0%
GAACCTTATGAACATGAGAT+TGG + chr4_4:63210738-63210757 None:intergenic 35.0%
! ACTATTCCTTTTCACAGCTT+CGG + chr4_4:63210776-63210795 None:intergenic 35.0%
AGACGATCAATTCTTTCTCT+TGG + chr4_4:63210817-63210836 None:intergenic 35.0%
AAGCTCTCAAAAACACCTTA+TGG - chr4_4:63210997-63211016 Msa0693950:three_prime_UTR 35.0%
!!! ATTTTGTTGTTGCAAGTGTG+AGG - chr4_4:63211352-63211371 Msa0693950:intron 35.0%
GAGTCCTCTCACTTATATAT+TGG + chr4_4:63211425-63211444 None:intergenic 35.0%
! ACCCAATGTCTCAAAGTTTT+AGG - chr4_4:63211449-63211468 Msa0693950:intron 35.0%
! TGGTGTTAAACTAACTTGTG+TGG - chr4_4:63211480-63211499 Msa0693950:three_prime_UTR 35.0%
!! ACAAATTTGTTGGGTCATGA+GGG + chr4_4:63211542-63211561 None:intergenic 35.0%
!! AACAAATTTGTTGGGTCATG+AGG + chr4_4:63211543-63211562 None:intergenic 35.0%
! TTACCATTCATTTGGGTTTG+TGG - chr4_4:63211726-63211745 Msa0693950:intron 35.0%
TTTCCACAAACCCAAATGAA+TGG + chr4_4:63211732-63211751 None:intergenic 35.0%
TTGCCACAAACATACAAAGT+CGG + chr4_4:63211929-63211948 None:intergenic 35.0%
CAAATGACCCTACTGTTAAA+GGG - chr4_4:63211946-63211965 Msa0693950:three_prime_UTR 35.0%
AAATGACCCTACTGTTAAAG+GGG - chr4_4:63211947-63211966 Msa0693950:three_prime_UTR 35.0%
AGCCAGATAGTTTCACATAA+AGG + chr4_4:63212326-63212345 None:intergenic 35.0%
! GTTTCAGACTATTTTGCTCA+AGG - chr4_4:63212523-63212542 Msa0693950:intron 35.0%
ACAATGTCACTAATACAGAC+TGG + chr4_4:63212607-63212626 None:intergenic 35.0%
AGAGCATGAAATTCATCTAC+AGG + chr4_4:63212643-63212662 None:intergenic 35.0%
AATTTCATGCTCTTGCACTT+GGG - chr4_4:63212650-63212669 Msa0693950:CDS 35.0%
CATCGTCAAGAATTTGCATA+TGG - chr4_4:63212678-63212697 Msa0693950:CDS 35.0%
TCAAGAATTTGCATATGGCT+GGG - chr4_4:63212683-63212702 Msa0693950:CDS 35.0%
! ATCAAACTGCTGCTTAAGAT+CGG + chr4_4:63212800-63212819 None:intergenic 35.0%
TTTATGTGAATGTGTTGCCA+TGG - chr4_4:63212933-63212952 Msa0693950:CDS 35.0%
! ATGAGTTGACAGACCTTTAT+CGG - chr4_4:63212986-63213005 Msa0693950:CDS 35.0%
!!! CTTTATCGGTTGTTGGTTTT+CGG - chr4_4:63213000-63213019 Msa0693950:CDS 35.0%
!!! TTTATCGGTTGTTGGTTTTC+GGG - chr4_4:63213001-63213020 Msa0693950:CDS 35.0%
CGGGTTTCACAATGAATATT+TGG - chr4_4:63213020-63213039 Msa0693950:CDS 35.0%
! ACAGGTTTTGCAAAGATCTT+TGG - chr4_4:63213123-63213142 Msa0693950:CDS 35.0%
!! ATGTTCTGAAGAAAGACCAA+GGG + chr4_4:63213246-63213265 None:intergenic 35.0%
ATTCTGACTTCAGAGAAGAT+TGG - chr4_4:63213335-63213354 Msa0693950:intron 35.0%
GTAATTAGGACACCAAATGA+TGG + chr4_4:63213429-63213448 None:intergenic 35.0%
TTACAGTCATAGTTGTTGTC+TGG - chr4_4:63213445-63213464 Msa0693950:intron 35.0%
GGAAATGATTAGAATGGTGA+AGG - chr4_4:63213466-63213485 Msa0693950:intron 35.0%
TTCGCATAAATATCTGCTAC+AGG - chr4_4:63213918-63213937 Msa0693950:intron 35.0%
! ATAATTGTTGGTGGAAGCTT+TGG - chr4_4:63213955-63213974 Msa0693950:intron 35.0%
ATCACAGACATTCTAGCATT+AGG + chr4_4:63214039-63214058 None:intergenic 35.0%
TAATGCTAGAATGTCTGTGA+TGG - chr4_4:63214038-63214057 Msa0693950:intron 35.0%
AATGCTAGAATGTCTGTGAT+GGG - chr4_4:63214039-63214058 Msa0693950:intron 35.0%
TCCTTACAAATTACTGGACT+TGG - chr4_4:63214096-63214115 Msa0693950:intron 35.0%
! TCCAAGTCCAGTAATTTGTA+AGG + chr4_4:63214100-63214119 None:intergenic 35.0%
GTTCTGTCTCAAATAGAGAA+AGG - chr4_4:63214165-63214184 Msa0693950:intron 35.0%
GGTTATAATACAGTGGAACA+AGG - chr4_4:63214296-63214315 Msa0693950:intron 35.0%
AGGAAGTCCTTATTACTCAA+CGG - chr4_4:63214368-63214387 Msa0693950:CDS 35.0%
!! ATCACTTTTCTTGTATCAGC+TGG + chr4_4:63214423-63214442 None:intergenic 35.0%
GCTGATACAAGAAAAGTGAT+TGG - chr4_4:63214423-63214442 Msa0693950:CDS 35.0%
! ATTTGGTATTTTCTGTCGCA+CGG + chr4_4:63214473-63214492 None:intergenic 35.0%
GCGACAGAAAATACCAAATA+TGG - chr4_4:63214474-63214493 Msa0693950:CDS 35.0%
ATTTGTTTACATGGGAAGAG+AGG - chr4_4:63214574-63214593 Msa0693950:five_prime_UTR 35.0%
AAGTTGACATATGATCAGGA+AGG + chr4_4:63214662-63214681 None:intergenic 35.0%
! TTGCAAGTTGACATATGATC+AGG + chr4_4:63214666-63214685 None:intergenic 35.0%
GCTAAGTATGTCTATCGGAT+CGG + chr4_4:63210497-63210516 None:intergenic 40.0%
ATCCGATAGACATACTTAGC+TGG - chr4_4:63210497-63210516 Msa0693950:three_prime_UTR 40.0%
GGCAAGAATTAATAATGCCG+TGG + chr4_4:63210549-63210568 None:intergenic 40.0%
CATGTTCATAAGGTTCTTGC+TGG - chr4_4:63210742-63210761 Msa0693950:three_prime_UTR 40.0%
! CTATTCCTTTTCACAGCTTC+GGG + chr4_4:63210775-63210794 None:intergenic 40.0%
ATTGATCGTCTACTTGATCC+TGG - chr4_4:63210826-63210845 Msa0693950:three_prime_UTR 40.0%
TTCTTTCCTTGAGCTTTCAC+AGG - chr4_4:63210852-63210871 Msa0693950:intron 40.0%
TAAGAACCTGTGAAAGCTCA+AGG + chr4_4:63210861-63210880 None:intergenic 40.0%
TAGCTTATGGACATGCCATA+AGG + chr4_4:63211015-63211034 None:intergenic 40.0%
GTGCCATGTCAAATGTTTGT+TGG + chr4_4:63211061-63211080 None:intergenic 40.0%
! ATTTGTCTGAGATGTACGCA+GGG - chr4_4:63211131-63211150 Msa0693950:three_prime_UTR 40.0%
! GTGAGTTTGAAGTCCTACAT+TGG - chr4_4:63211374-63211393 Msa0693950:intron 40.0%
! AGTTTGAAGTCCTACATTGG+AGG - chr4_4:63211377-63211396 Msa0693950:intron 40.0%
!! CAAATTTGTTGGGTCATGAG+GGG + chr4_4:63211541-63211560 None:intergenic 40.0%
TGAGTGAATATGAAGCTTGC+AGG - chr4_4:63211837-63211856 Msa0693950:intron 40.0%
GCAAATGACCCTACTGTTAA+AGG - chr4_4:63211945-63211964 Msa0693950:three_prime_UTR 40.0%
AATGACCCTACTGTTAAAGG+GGG - chr4_4:63211948-63211967 Msa0693950:three_prime_UTR 40.0%
TAAGAAACATCTCAGAGCAC+AGG - chr4_4:63211992-63212011 Msa0693950:three_prime_UTR 40.0%
CTGTCAACAAGATACACACA+CGG + chr4_4:63212041-63212060 None:intergenic 40.0%
TGTGTGTATCTTGTTGACAG+TGG - chr4_4:63212041-63212060 Msa0693950:three_prime_UTR 40.0%
AGGCTATAATGTCTGCTCAA+GGG - chr4_4:63212135-63212154 Msa0693950:three_prime_UTR 40.0%
CTTGACCATCACACTTTCAT+CGG + chr4_4:63212225-63212244 None:intergenic 40.0%
! GATGAAAGTGTGATGGTCAA+GGG - chr4_4:63212224-63212243 Msa0693950:three_prime_UTR 40.0%
!! GAGCATAAGATAAGAGTGTC+TGG + chr4_4:63212297-63212316 None:intergenic 40.0%
TTGACATTATAGGCTGCTAC+TGG - chr4_4:63212442-63212461 Msa0693950:CDS 40.0%
! TTTGCTCAAGGTATTTGTGG+TGG - chr4_4:63212535-63212554 Msa0693950:intron 40.0%
GAATTTCATGCTCTTGCACT+TGG - chr4_4:63212649-63212668 Msa0693950:CDS 40.0%
GTCAAGAATTTGCATATGGC+TGG - chr4_4:63212682-63212701 Msa0693950:CDS 40.0%
CAATGCGAGAAATCACTTCT+CGG + chr4_4:63212825-63212844 None:intergenic 40.0%
GTGATTTCTCGCATTGTTGA+CGG - chr4_4:63212829-63212848 Msa0693950:intron 40.0%
CGAAAACCAACAACCGATAA+AGG + chr4_4:63213002-63213021 None:intergenic 40.0%
!! TACAGCTTGCTGCATATACT+TGG + chr4_4:63213052-63213071 None:intergenic 40.0%
TATGTGCAGACTCTTGTAAC+AGG - chr4_4:63213105-63213124 Msa0693950:CDS 40.0%
!! TTCAATGAATCGGCTCTGAA+AGG - chr4_4:63213183-63213202 Msa0693950:CDS 40.0%
!! TCAATGAATCGGCTCTGAAA+GGG - chr4_4:63213184-63213203 Msa0693950:CDS 40.0%
TACTCAACGTAACATTCCCT+TGG - chr4_4:63213227-63213246 Msa0693950:CDS 40.0%
!! GATGTTCTGAAGAAAGACCA+AGG + chr4_4:63213247-63213266 None:intergenic 40.0%
GTCTTTCTTCAGAACATCAC+CGG - chr4_4:63213249-63213268 Msa0693950:CDS 40.0%
!! AATGATGTTCTGAGGAGAGA+AGG + chr4_4:63213363-63213382 None:intergenic 40.0%
TTCTCTCCTCAGAACATCAT+TGG - chr4_4:63213362-63213381 Msa0693950:intron 40.0%
TCCTCAGAACATCATTGGAT+TGG - chr4_4:63213367-63213386 Msa0693950:intron 40.0%
ACCAATCCAATGATGTTCTG+AGG + chr4_4:63213371-63213390 None:intergenic 40.0%
ACACATGTCTATTTGGTAGG+TGG - chr4_4:63213626-63213645 Msa0693950:intron 40.0%
CACATGTCTATTTGGTAGGT+GGG - chr4_4:63213627-63213646 Msa0693950:intron 40.0%
AGCAAAGTCAGGTGCAAAAA+TGG - chr4_4:63213674-63213693 Msa0693950:intron 40.0%
!!! TTCGCTGCATGTGTTGTTTT+GGG - chr4_4:63213781-63213800 Msa0693950:intron 40.0%
GAACATGAAGTTCGGACTAT+AGG + chr4_4:63214010-63214029 None:intergenic 40.0%
ACATTCTAGCATTAGGCCAA+AGG + chr4_4:63214032-63214051 None:intergenic 40.0%
GATAATATTCATCAGGCTGC+TGG - chr4_4:63214141-63214160 Msa0693950:intron 40.0%
GTTCAAAGCGAAAGTAGTTG+AGG - chr4_4:63214332-63214351 Msa0693950:CDS 40.0%
AGTATGTCTATCGGATCGGA+GGG + chr4_4:63210493-63210512 None:intergenic 45.0%
AAGTATGTCTATCGGATCGG+AGG + chr4_4:63210494-63210513 None:intergenic 45.0%
AGCAGAGTTCAATGACTCCA+CGG - chr4_4:63210529-63210548 Msa0693950:three_prime_UTR 45.0%
GTTCATAAGGTTCTTGCTGG+TGG - chr4_4:63210745-63210764 Msa0693950:three_prime_UTR 45.0%
AGCTCAAGGAAAGAAGAACC+AGG + chr4_4:63210847-63210866 None:intergenic 45.0%
! CATTTGTCTGAGATGTACGC+AGG - chr4_4:63211130-63211149 Msa0693950:three_prime_UTR 45.0%
AGGGACACTCATAATCCTAG+AGG - chr4_4:63211150-63211169 Msa0693950:three_prime_UTR 45.0%
! TTTGAAGCATGAGCACCTCT+AGG + chr4_4:63211168-63211187 None:intergenic 45.0%
! CTAACTTGTGTGGTTGCTCA+TGG - chr4_4:63211490-63211509 Msa0693950:three_prime_UTR 45.0%
TATGAAGAGCCTTTGCCTTC+TGG - chr4_4:63211870-63211889 Msa0693950:intron 45.0%
! TGGCCGACTTTGTATGTTTG+TGG - chr4_4:63211923-63211942 Msa0693950:three_prime_UTR 45.0%
ATGACCCTACTGTTAAAGGG+GGG - chr4_4:63211949-63211968 Msa0693950:three_prime_UTR 45.0%
AAGTCCCCCCTTTAACAGTA+GGG + chr4_4:63211956-63211975 None:intergenic 45.0%
TAAGTCCCCCCTTTAACAGT+AGG + chr4_4:63211957-63211976 None:intergenic 45.0%
GTGTATCTTGTTGACAGTGG+TGG - chr4_4:63212044-63212063 Msa0693950:three_prime_UTR 45.0%
CTTGAGCAGACATTATAGCC+TGG + chr4_4:63212136-63212155 None:intergenic 45.0%
CAGGCTATAATGTCTGCTCA+AGG - chr4_4:63212134-63212153 Msa0693950:three_prime_UTR 45.0%
AGGGATTCCCCAAATTGCAT+TGG - chr4_4:63212154-63212173 Msa0693950:three_prime_UTR 45.0%
GATTCCCCAAATTGCATTGG+TGG - chr4_4:63212157-63212176 Msa0693950:three_prime_UTR 45.0%
CCTACCACCAATGCAATTTG+GGG + chr4_4:63212164-63212183 None:intergenic 45.0%
GCCTACCACCAATGCAATTT+GGG + chr4_4:63212165-63212184 None:intergenic 45.0%
AGCCTACCACCAATGCAATT+TGG + chr4_4:63212166-63212185 None:intergenic 45.0%
ATCGGCCATAGCAGGTATAT+AGG + chr4_4:63212207-63212226 None:intergenic 45.0%
! TATGGCCGATGAAAGTGTGA+TGG - chr4_4:63212217-63212236 Msa0693950:three_prime_UTR 45.0%
! CGATGAAAGTGTGATGGTCA+AGG - chr4_4:63212223-63212242 Msa0693950:three_prime_UTR 45.0%
AGTGTGATGGTCAAGGGAAA+TGG - chr4_4:63212230-63212249 Msa0693950:three_prime_UTR 45.0%
TGGAGCTGACCTTAACAAGA+GGG + chr4_4:63212277-63212296 None:intergenic 45.0%
TACTGGAGAAGAAGTCTCTG+CGG - chr4_4:63212459-63212478 Msa0693950:CDS 45.0%
TGCAGTACACTGCAAGACTT+CGG - chr4_4:63212498-63212517 Msa0693950:CDS 45.0%
GGTGGATATGCACATCTAAG+TGG - chr4_4:63212553-63212572 Msa0693950:intron 45.0%
! ACTGCTGCTTAAGATCGGTA+GGG + chr4_4:63212795-63212814 None:intergenic 45.0%
! AACTGCTGCTTAAGATCGGT+AGG + chr4_4:63212796-63212815 None:intergenic 45.0%
AGAAACTGTATGGCACTGTG+AGG - chr4_4:63212872-63212891 Msa0693950:intron 45.0%
GAAACTGTATGGCACTGTGA+GGG - chr4_4:63212873-63212892 Msa0693950:intron 45.0%
CTGTCAACTCATCAAGCTTC+AGG + chr4_4:63212978-63212997 None:intergenic 45.0%
! GACAGACCTTTATCGGTTGT+TGG - chr4_4:63212993-63213012 Msa0693950:CDS 45.0%
AAGATCTTTGGACAGCCTGT+AGG - chr4_4:63213135-63213154 Msa0693950:CDS 45.0%
GGACAGCCTGTAGGAATTAT+TGG - chr4_4:63213144-63213163 Msa0693950:CDS 45.0%
!! CAATGAATCGGCTCTGAAAG+GGG - chr4_4:63213185-63213204 Msa0693950:CDS 45.0%
TCAGAACATCACCGGATTCA+TGG - chr4_4:63213257-63213276 Msa0693950:CDS 45.0%
! CTTTGCTATGCCATTTGCCT+CGG + chr4_4:63213661-63213680 None:intergenic 45.0%
GCAAATGGCATAGCAAAGTC+AGG - chr4_4:63213663-63213682 Msa0693950:intron 45.0%
GTCAGGTGCAAAAATGGTGA+TGG - chr4_4:63213680-63213699 Msa0693950:intron 45.0%
GTATCTTGCGCAAAGGTTAG+TGG - chr4_4:63213705-63213724 Msa0693950:intron 45.0%
!!! GTTCGCTGCATGTGTTGTTT+TGG - chr4_4:63213780-63213799 Msa0693950:intron 45.0%
!!! TCGCTGCATGTGTTGTTTTG+GGG - chr4_4:63213782-63213801 Msa0693950:intron 45.0%
GCTGGAAACTATGCAATGTG+TGG - chr4_4:63213979-63213998 Msa0693950:intron 45.0%
GTCCGAACTTCATGTTCCTT+TGG - chr4_4:63214013-63214032 Msa0693950:intron 45.0%
GGCCAAAGGAACATGAAGTT+CGG + chr4_4:63214018-63214037 None:intergenic 45.0%
ACAGTGGAACAAGGAAGAAG+AGG - chr4_4:63214305-63214324 Msa0693950:intron 45.0%
! ATTTTCTGTCGCACGGTTCA+AGG + chr4_4:63214466-63214485 None:intergenic 45.0%
TGTTTACATGGGAAGAGAGG+TGG - chr4_4:63214577-63214596 Msa0693950:five_prime_UTR 45.0%
GTTTACATGGGAAGAGAGGT+GGG - chr4_4:63214578-63214597 Msa0693950:five_prime_UTR 45.0%
TGTTTGGGTGCCCTTCCTAA+TGG - chr4_4:63210682-63210701 Msa0693950:three_prime_UTR 50.0%
CATAGCTCCGCCATTAGGAA+GGG + chr4_4:63210695-63210714 None:intergenic 50.0%
TGTTCCATAGCTCCGCCATT+AGG + chr4_4:63210700-63210719 None:intergenic 50.0%
CATAAGGTTCTTGCTGGTGG+TGG - chr4_4:63210748-63210767 Msa0693950:three_prime_UTR 50.0%
TGGTTGCTCATGGCCTAATG+TGG - chr4_4:63211500-63211519 Msa0693950:three_prime_UTR 50.0%
CTCAGGGGATCATCCACATT+AGG + chr4_4:63211516-63211535 None:intergenic 50.0%
AAGAGCCTTTGCCTTCTGGT+GGG - chr4_4:63211874-63211893 Msa0693950:intron 50.0%
ATACAAAGTCGGCCATGCAC+TGG + chr4_4:63211918-63211937 None:intergenic 50.0%
TCTCAGAGCACAGGAGATTG+CGG - chr4_4:63212001-63212020 Msa0693950:three_prime_UTR 50.0%
GGAAAGACATCAGCCTGCTT+GGG + chr4_4:63212080-63212099 None:intergenic 50.0%
CAAGCAGGCTGATGTCTTTC+CGG - chr4_4:63212079-63212098 Msa0693950:three_prime_UTR 50.0%
GGCTGATGTCTTTCCGGATA+AGG - chr4_4:63212085-63212104 Msa0693950:three_prime_UTR 50.0%
! CCCCAAATTGCATTGGTGGT+AGG - chr4_4:63212161-63212180 Msa0693950:three_prime_UTR 50.0%
CGGTGCCTATATACCTGCTA+TGG - chr4_4:63212199-63212218 Msa0693950:three_prime_UTR 50.0%
ACACTTTCATCGGCCATAGC+AGG + chr4_4:63212215-63212234 None:intergenic 50.0%
GAGCTGACCTTAACAAGAGG+GGG + chr4_4:63212275-63212294 None:intergenic 50.0%
GGAGCTGACCTTAACAAGAG+GGG + chr4_4:63212276-63212295 None:intergenic 50.0%
CTGGAGCTGACCTTAACAAG+AGG + chr4_4:63212278-63212297 None:intergenic 50.0%
AGAAGTCTCTGCGGAGGATT+TGG - chr4_4:63212468-63212487 Msa0693950:CDS 50.0%
GAAGTCTCTGCGGAGGATTT+GGG - chr4_4:63212469-63212488 Msa0693950:CDS 50.0%
GCAGTACACTGCAAGACTTC+GGG - chr4_4:63212499-63212518 Msa0693950:CDS 50.0%
TTCATGCTCTTGCACTTGGG+AGG - chr4_4:63212653-63212672 Msa0693950:CDS 50.0%
TCATGCTCTTGCACTTGGGA+GGG - chr4_4:63212654-63212673 Msa0693950:CDS 50.0%
GGGAGAGATGTCTCGACAAA+TGG - chr4_4:63212703-63212722 Msa0693950:CDS 50.0%
! CTGCTGCTTAAGATCGGTAG+GGG + chr4_4:63212794-63212813 None:intergenic 50.0%
GGCTCAAAATCCGAGGCAAA+TGG - chr4_4:63213648-63213667 Msa0693950:intron 50.0%
GATGGCTGTATCTTGCGCAA+AGG - chr4_4:63213698-63213717 Msa0693950:intron 50.0%
!!! GTGTTGTTTTGGGGCAGTGA+CGG - chr4_4:63213791-63213810 Msa0693950:intron 50.0%
! GCTAGAATGTCTGTGATGGG+TGG - chr4_4:63214042-63214061 Msa0693950:intron 50.0%
GTTGAGGCGTATGAGAGAGA+AGG - chr4_4:63214348-63214367 Msa0693950:CDS 50.0%
GTCCTTATTACTCAACGGCG+AGG - chr4_4:63214373-63214392 Msa0693950:CDS 50.0%
AGCCTCGCCGTTGAGTAATA+AGG + chr4_4:63214378-63214397 None:intergenic 50.0%
ATTACTCAACGGCGAGGCTT+TGG - chr4_4:63214379-63214398 Msa0693950:CDS 50.0%
TTACTCAACGGCGAGGCTTT+GGG - chr4_4:63214380-63214399 Msa0693950:CDS 50.0%
TGTCTATCGGATCGGAGGGA+TGG + chr4_4:63210489-63210508 None:intergenic 55.0%
TTGGGTGCCCTTCCTAATGG+CGG - chr4_4:63210685-63210704 Msa0693950:three_prime_UTR 55.0%
CCATAGCTCCGCCATTAGGA+AGG + chr4_4:63210696-63210715 None:intergenic 55.0%
! CCTTCCTAATGGCGGAGCTA+TGG - chr4_4:63210693-63210712 Msa0693950:three_prime_UTR 55.0%
GTGGACCCGAAGCTGTGAAA+AGG - chr4_4:63210767-63210786 Msa0693950:three_prime_UTR 55.0%
GAAGAGCCTTTGCCTTCTGG+TGG - chr4_4:63211873-63211892 Msa0693950:intron 55.0%
AGAGCCTTTGCCTTCTGGTG+GGG - chr4_4:63211875-63211894 Msa0693950:intron 55.0%
ACAACCCCACCAGAAGGCAA+AGG + chr4_4:63211882-63211901 None:intergenic 55.0%
CTTCTGGTGGGGTTGTGACT+GGG - chr4_4:63211886-63211905 Msa0693950:intron 55.0%
TGGTGCTTTCCTTCCCAAGC+AGG - chr4_4:63212064-63212083 Msa0693950:three_prime_UTR 55.0%
AGACATCAGCCTGCTTGGGA+AGG + chr4_4:63212076-63212095 None:intergenic 55.0%
CGGAAAGACATCAGCCTGCT+TGG + chr4_4:63212081-63212100 None:intergenic 55.0%
TGGAGAAGAAGTCTCTGCGG+AGG - chr4_4:63212462-63212481 Msa0693950:CDS 55.0%
! GTAGGTGGGCTCAAAATCCG+AGG - chr4_4:63213641-63213660 Msa0693950:intron 55.0%
! GTTGGTGGAAGCTTTGGTGC+TGG - chr4_4:63213961-63213980 Msa0693950:intron 55.0%
GAGAGGTGGGAGAGGTTGAA+TGG - chr4_4:63214591-63214610 Msa0693950:five_prime_UTR 55.0%
TGGGTCATGAGGGGAGCTCA+GGG + chr4_4:63211532-63211551 None:intergenic 60.0%
TTGGGTCATGAGGGGAGCTC+AGG + chr4_4:63211533-63211552 None:intergenic 60.0%
CCAGTCACAACCCCACCAGA+AGG + chr4_4:63211888-63211907 None:intergenic 60.0%
CCTTCTGGTGGGGTTGTGAC+TGG - chr4_4:63211885-63211904 Msa0693950:intron 60.0%
GGTGGGGTTGTGACTGGGAT+CGG - chr4_4:63211891-63211910 Msa0693950:intron 60.0%
ACTGGGATCGGTCCAGTGCA+TGG - chr4_4:63211903-63211922 Msa0693950:three_prime_UTR 60.0%
GTGGTAGGCTCTTGCACTGC+TGG - chr4_4:63212176-63212195 Msa0693950:three_prime_UTR 60.0%
GTAGGCTCTTGCACTGCTGG+CGG - chr4_4:63212179-63212198 Msa0693950:three_prime_UTR 60.0%
AGCAGGGCCCCCTCTTGTTA+AGG - chr4_4:63212265-63212284 Msa0693950:CDS 60.0%
GTCTCTGCGGAGGATTTGGG+AGG - chr4_4:63212472-63212491 Msa0693950:CDS 60.0%
!!! GTTTTGGGGCAGTGACGGTG+AGG - chr4_4:63213796-63213815 Msa0693950:intron 60.0%
!! GTCTGTGATGGGTGGTGCTC+AGG - chr4_4:63214050-63214069 Msa0693950:intron 60.0%
!! ACGGCGAGGCTTTGGGATGA+TGG - chr4_4:63214387-63214406 Msa0693950:CDS 60.0%
CATGGGAAGAGAGGTGGGAG+AGG - chr4_4:63214583-63214602 Msa0693950:five_prime_UTR 60.0%
GGGTCATGAGGGGAGCTCAG+GGG + chr4_4:63211531-63211550 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 63210465 63214714 63210465 ID=Msa0693950;Name=Msa0693950
chr4_4 mRNA 63210465 63214714 63210465 ID=Msa0693950-mRNA-1;Parent=Msa0693950;Name=Msa0693950-mRNA-1;_AED=0.19;_eAED=0.19;_QI=151|1|1|1|1|0.87|8|1024|353
chr4_4 exon 63210465 63210870 63210465 ID=Msa0693950-mRNA-1:exon:17756;Parent=Msa0693950-mRNA-1
chr4_4 exon 63210967 63211023 63210967 ID=Msa0693950-mRNA-1:exon:17755;Parent=Msa0693950-mRNA-1
chr4_4 exon 63211108 63211239 63211108 ID=Msa0693950-mRNA-1:exon:17754;Parent=Msa0693950-mRNA-1
chr4_4 exon 63211460 63211534 63211460 ID=Msa0693950-mRNA-1:exon:17753;Parent=Msa0693950-mRNA-1
chr4_4 exon 63211901 63212532 63211901 ID=Msa0693950-mRNA-1:exon:17752;Parent=Msa0693950-mRNA-1
chr4_4 exon 63212635 63212725 63212635 ID=Msa0693950-mRNA-1:exon:17751;Parent=Msa0693950-mRNA-1
chr4_4 exon 63212893 63213327 63212893 ID=Msa0693950-mRNA-1:exon:17750;Parent=Msa0693950-mRNA-1
chr4_4 exon 63214306 63214714 63214306 ID=Msa0693950-mRNA-1:exon:17749;Parent=Msa0693950-mRNA-1
chr4_4 five_prime_UTR 63214564 63214714 63214564 ID=Msa0693950-mRNA-1:five_prime_utr;Parent=Msa0693950-mRNA-1
chr4_4 CDS 63214306 63214563 63214306 ID=Msa0693950-mRNA-1:cds;Parent=Msa0693950-mRNA-1
chr4_4 CDS 63212893 63213327 63212893 ID=Msa0693950-mRNA-1:cds;Parent=Msa0693950-mRNA-1
chr4_4 CDS 63212635 63212725 63212635 ID=Msa0693950-mRNA-1:cds;Parent=Msa0693950-mRNA-1
chr4_4 CDS 63212255 63212532 63212255 ID=Msa0693950-mRNA-1:cds;Parent=Msa0693950-mRNA-1
chr4_4 three_prime_UTR 63211901 63212254 63211901 ID=Msa0693950-mRNA-1:three_prime_utr;Parent=Msa0693950-mRNA-1
chr4_4 three_prime_UTR 63211460 63211534 63211460 ID=Msa0693950-mRNA-1:three_prime_utr;Parent=Msa0693950-mRNA-1
chr4_4 three_prime_UTR 63211108 63211239 63211108 ID=Msa0693950-mRNA-1:three_prime_utr;Parent=Msa0693950-mRNA-1
chr4_4 three_prime_UTR 63210967 63211023 63210967 ID=Msa0693950-mRNA-1:three_prime_utr;Parent=Msa0693950-mRNA-1
chr4_4 three_prime_UTR 63210465 63210870 63210465 ID=Msa0693950-mRNA-1:three_prime_utr;Parent=Msa0693950-mRNA-1
Gene Sequence

>Msa0693950

ATGTTTAAACTAATTGGAAGAAAATCAAGTTGGGTACCCTCCAATTTACTGTTAAGAAGAGAATTGTGTTTGGGTGCCCTTCCTAATGGCGGAGCTATGGAACACTTGATCACTCAACTCCAATCTCATGTTCATAAGGTTCTTGCTGGTGGTGGACCCGAAGCTGTGAAAAGGAATAGTAGTAGAAATAAGCTTTTACCAAGAGAAAGAATTGATCGTCTACTTGATCCTGGTTCTTCTTTCCTTGAGCTTTCACAGCTTGCAGGACACGAGTTGTATGAAGAGCCTTTGCCTTCTGGTGGGGTTGTGACTGGGATCGGTCCAGTGCATGGCCGACTTTGTATGTTTGTGGCAAATGACCCTACTGTTAAAGGGGGGACTTATTATCCTATTACAGTTAAGAAACATCTCAGAGCACAGGAGATTGCGGCTCAATGCAAATTGCCGTGTGTGTATCTTGTTGACAGTGGTGGTGCTTTCCTTCCCAAGCAGGCTGATGTCTTTCCGGATAAGGAAAATTTTGGTAGAATATTCTATAACCAGGCTATAATGTCTGCTCAAGGGATTCCCCAAATTGCATTGGTGGTAGGCTCTTGCACTGCTGGCGGTGCCTATATACCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACTATTTTTTTAGCAGGGCCCCCTCTTGTTAAGGCTGCTACTGGAGAAGAAGTCTCTGCGGAGGATTTGGGAGGTGCTGCAGTACACTGCAAGACTTCGGGTGTTTCAGACTATTTTGCTCAAGATGAATTTCATGCTCTTGCACTTGGGAGGGACATCGTCAAGAATTTGCATATGGCTGGGAGAGATGTCTCGACAAATGGATTGCAAAATACAAGTTATGAGTATAAGGAGCCACTATATGATGTCAATGAACTTCGTTCTATTGCCCCTACCGATCTTAAGCAGCAGTTTGATATCCGAGAAGTGATTTCTCGCATTGTTGACGGAAGTGAATTTGATGAATTCAAGAAACTGTATGGCACTGTGAGGGCTTATTCACTTCACTTTCTACCGTTTTAA
Protein sequence

>Msa0693950

MFKLIGRKSSWVPSNLLLRRELCLGALPNGGAMEHLITQLQSHVHKVLAGGGPEAVKRNSSRNKLLPRERIDRLLDPGSSFLELSQLAGHELYEEPLPSGGVVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCKLPCVYLVDSGGAFLPKQADVFPDKENFGRIFYNQAIMSAQGIPQIALVVGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGAAVHCKTSGVSDYFAQDEFHALALGRDIVKNLHMAGRDVSTNGLQNTSYEYKEPLYDVNELRSIAPTDLKQQFDIREVISRIVDGSEFDEFKKLYGTVRAYSLHFLPF*