AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651620 MtrunA17_Chr4g0044751 97.959 343 7 0 1 343 1 343 0.0 699
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651620 AT4G34030.1 76.036 338 69 1 18 343 41 378 0.0 519

Find 184 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTAAATACACCATATT+TGG 0.155301 4_3:+59087943 None:intergenic
GAAAACATGTTTAAACTAAT+TGG 0.177202 4_3:-59091820 Msa0651620:exon
GCAAATGACCCTACTGTTAA+AGG 0.206882 4_3:-59090485 Msa0651620:CDS
CCTTCTGGTGGGGTTGTGAC+TGG 0.207802 4_3:-59090545 Msa0651620:CDS
TTCTCTTCTTAACAGTAAAT+TGG 0.209129 4_3:+59091774 None:intergenic
GGACAGCCTGTAGGAATTAT+TGG 0.229562 4_3:-59089286 Msa0651620:three_prime_UTR
AGCCTACCACCAATGCAATT+TGG 0.232537 4_3:+59090267 None:intergenic
TTTCCGGATAAGGAAAATTT+TGG 0.235219 4_3:-59090335 Msa0651620:CDS
CGGGTTTCACAATGAATATT+TGG 0.241606 4_3:-59089410 Msa0651620:three_prime_UTR
GCCTACCACCAATGCAATTT+GGG 0.252766 4_3:+59090268 None:intergenic
CAAGCAGGCTGATGTCTTTC+CGG 0.257827 4_3:-59090351 Msa0651620:CDS
AGAAGTCTCTGCGGAGGATT+TGG 0.263617 4_3:-59089962 Msa0651620:CDS
TATGAAGAGCCTTTGCCTTC+TGG 0.275232 4_3:-59090560 Msa0651620:CDS
AGATGTTTCTTAACTGTAAT+AGG 0.281386 4_3:+59090449 None:intergenic
ATGAGTTGACAGACCTTTAT+CGG 0.298219 4_3:-59089444 Msa0651620:three_prime_UTR
ACAAATCTACATTAGACTTT+AGG 0.301393 4_3:+59087873 None:intergenic
CTGCACATAGATTTCAAATA+AGG 0.305925 4_3:+59089339 None:intergenic
GCGACAGAAAATACCAAATA+TGG 0.306791 4_3:-59087956 Msa0651620:three_prime_UTR
AAATACAAGTTATGAGTATA+AGG 0.335328 4_3:-59089698 Msa0651620:CDS
TTACTCAACGGCGAGGCTTT+GGG 0.338797 4_3:-59088050 Msa0651620:three_prime_UTR
ATTACTCAACGGCGAGGCTT+TGG 0.339622 4_3:-59088051 Msa0651620:three_prime_UTR
AGCCTCGCCGTTGAGTAATA+AGG 0.347863 4_3:+59088055 None:intergenic
CTGTCAACTCATCAAGCTTC+AGG 0.351217 4_3:+59089455 None:intergenic
TCAGAACATCACCGGATTCA+TGG 0.364972 4_3:-59089173 Msa0651620:intron
GTCCGAACTTCATGTTCCTT+TGG 0.370909 4_3:-59088417 Msa0651620:three_prime_UTR
TTCTTTCCTTGAGCTTTCAC+AGG 0.384052 4_3:-59091578 Msa0651620:intron
CATGTTCATAAGGTTCTTGC+TGG 0.385373 4_3:-59091688 Msa0651620:CDS
TGTTTGGGTGCCCTTCCTAA+TGG 0.386494 4_3:-59091748 Msa0651620:CDS
GTGGTAGGCTCTTGCACTGC+TGG 0.388796 4_3:-59090254 Msa0651620:CDS
TATGTGCAGACTCTTGTAAC+AGG 0.393966 4_3:-59089325 Msa0651620:three_prime_UTR
TACAGCTTGCTGCATATACT+TGG 0.397938 4_3:+59089381 None:intergenic
CTTCTGGTGGGGTTGTGACT+GGG 0.408731 4_3:-59090544 Msa0651620:CDS
GGCTGATGTCTTTCCGGATA+AGG 0.409916 4_3:-59090345 Msa0651620:CDS
CGAAAACCAACAACCGATAA+AGG 0.413437 4_3:+59089431 None:intergenic
TGGTGCTTTCCTTCCCAAGC+AGG 0.414000 4_3:-59090366 Msa0651620:CDS
CAAATGACCCTACTGTTAAA+GGG 0.415811 4_3:-59090484 Msa0651620:CDS
GCAGTACACTGCAAGACTTC+GGG 0.417609 4_3:-59089931 Msa0651620:CDS
GAAGTCTCTGCGGAGGATTT+GGG 0.419494 4_3:-59089961 Msa0651620:CDS
TGTTCCATAGCTCCGCCATT+AGG 0.421284 4_3:+59091733 None:intergenic
AGACGATCAATTCTTTCTCT+TGG 0.423934 4_3:+59091616 None:intergenic
ATAATTGTTGGTGGAAGCTT+TGG 0.424489 4_3:-59088475 Msa0651620:three_prime_UTR
GAATTTCATGCTCTTGCACT+TGG 0.426359 4_3:-59089781 Msa0651620:CDS
GAGAGGTGGGAGAGGTTGAA+TGG 0.429245 4_3:-59087839 Msa0651620:three_prime_UTR
TTTAATTCATACCATGAATC+CGG 0.429251 4_3:+59089162 None:intergenic
GATGAATTCAAGAAACTGTA+TGG 0.435673 4_3:-59089568 Msa0651620:CDS
GTCAAGAATTTGCATATGGC+TGG 0.436817 4_3:-59089748 Msa0651620:CDS
CGGAAAGACATCAGCCTGCT+TGG 0.437839 4_3:+59090352 None:intergenic
ATCTGTGATGGGTGGTGCTC+AGG 0.438212 4_3:-59088380 Msa0651620:intron
GAACATGAAGTTCGGACTAT+AGG 0.440234 4_3:+59088423 None:intergenic
ACCTTTCTTCTTCTAAGTAA+AGG 0.442877 4_3:+59091863 None:intergenic
CTTGACCATCACACTTTCAT+CGG 0.444386 4_3:+59090208 None:intergenic
GCCTTTACTTAGAAGAAGAA+AGG 0.447297 4_3:-59091864 Msa0651620:five_prime_UTR
CATAAGGTTCTTGCTGGTGG+TGG 0.450736 4_3:-59091682 Msa0651620:CDS
GACAGACCTTTATCGGTTGT+TGG 0.452410 4_3:-59089437 Msa0651620:three_prime_UTR
GAACCTTATGAACATGAGAT+TGG 0.456065 4_3:+59091695 None:intergenic
GGTGGGGTTGTGACTGGGAT+CGG 0.456548 4_3:-59090539 Msa0651620:CDS
CCTAAAATCACTATAATTGT+TGG 0.457203 4_3:-59088487 Msa0651620:three_prime_UTR
TCAATGAATCGGCTCTGAAA+GGG 0.459441 4_3:-59089246 Msa0651620:three_prime_UTR
ACGGCGAGGCTTTGGGATGA+TGG 0.460924 4_3:-59088043 Msa0651620:three_prime_UTR
CTAATGTAGATTTGTTTACA+TGG 0.461783 4_3:-59087865 Msa0651620:three_prime_UTR
ACTCCAATCTCATGTTCATA+AGG 0.464137 4_3:-59091698 Msa0651620:CDS
GGGAGAGATGTCTCGACAAA+TGG 0.464683 4_3:-59089727 Msa0651620:CDS
TTAAGAAGAGAATTGTGTTT+GGG 0.465861 4_3:-59091763 Msa0651620:CDS
GTCTTTCTTCAGAACATCAC+CGG 0.466141 4_3:-59089181 Msa0651620:three_prime_UTR
GTTAAGAAGAGAATTGTGTT+TGG 0.468170 4_3:-59091764 Msa0651620:CDS
CAATGCGAGAAATCACTTCT+CGG 0.469080 4_3:+59089608 None:intergenic
ATCGGCCATAGCAGGTATAT+AGG 0.469640 4_3:+59090226 None:intergenic
ATCACAGATATTCTAGCATT+AGG 0.470037 4_3:+59088394 None:intergenic
TGGCCGACTTTGTATGTTTG+TGG 0.474171 4_3:-59090507 Msa0651620:CDS
TTGTTTCCAATAATTCCTAC+AGG 0.474318 4_3:+59089280 None:intergenic
TTGACATTATAGGCTGCTAC+TGG 0.479167 4_3:-59089988 Msa0651620:intron
CATAAATACAATGATTAAAA+CGG 0.483150 4_3:+59089514 None:intergenic
CATGGGAAGAGAGGTGGGAG+AGG 0.485320 4_3:-59087847 Msa0651620:three_prime_UTR
GTTTACATGGGAAGAGAGGT+GGG 0.489753 4_3:-59087852 Msa0651620:three_prime_UTR
GGAAAGACATCAGCCTGCTT+GGG 0.489867 4_3:+59090353 None:intergenic
GATAATATTCATCAGGCTGC+TGG 0.490449 4_3:-59088289 Msa0651620:intron
GCAAATGGCATAGCAAAGTC+AGG 0.491642 4_3:-59088767 Msa0651620:three_prime_UTR
GCTGATACAAGAAAAGTGAT+TGG 0.495102 4_3:-59088007 Msa0651620:three_prime_UTR
TGCAGTACACTGCAAGACTT+CGG 0.495679 4_3:-59089932 Msa0651620:CDS
GTGATTTCTCGCATTGTTGA+CGG 0.495714 4_3:-59089601 Msa0651620:CDS
ATACAAAGTCGGCCATGCAC+TGG 0.497636 4_3:+59090515 None:intergenic
CATCGTCAAGAATTTGCATA+TGG 0.498312 4_3:-59089752 Msa0651620:CDS
CTTTGCTATGCCATTTGCCT+CGG 0.499152 4_3:+59088772 None:intergenic
TTGCAAGTTGACATATGATC+AGG 0.499699 4_3:+59087767 None:intergenic
ATTGATCGTCTACTTGATCC+TGG 0.501793 4_3:-59091604 Msa0651620:CDS
GAAGAGCCTTTGCCTTCTGG+TGG 0.501882 4_3:-59090557 Msa0651620:CDS
ATTTGTTTACATGGGAAGAG+AGG 0.504374 4_3:-59087856 Msa0651620:three_prime_UTR
AAGAGCCTTTGCCTTCTGGT+GGG 0.506082 4_3:-59090556 Msa0651620:CDS
TGTTTACATGGGAAGAGAGG+TGG 0.506141 4_3:-59087853 Msa0651620:three_prime_UTR
GGCTCAAAATCCGAGGCAAA+TGG 0.507106 4_3:-59088782 Msa0651620:three_prime_UTR
GATTCCCCAAATTGCATTGG+TGG 0.511734 4_3:-59090273 Msa0651620:CDS
TCTTCTTAACAGTAAATTGG+AGG 0.513083 4_3:+59091777 None:intergenic
CCTTCCTAATGGCGGAGCTA+TGG 0.518394 4_3:-59091737 Msa0651620:CDS
TTCAATGAATCGGCTCTGAA+AGG 0.519323 4_3:-59089247 Msa0651620:three_prime_UTR
TAAGAAACATCTCAGAGCAC+AGG 0.521326 4_3:-59090438 Msa0651620:CDS
GGCCAAAGGAACATGAAGTT+CGG 0.521966 4_3:+59088415 None:intergenic
TTCATGCTCTTGCACTTGGG+AGG 0.526100 4_3:-59089777 Msa0651620:CDS
AAAATCACTATAATTGTTGG+TGG 0.528181 4_3:-59088484 Msa0651620:three_prime_UTR
CCATAGCTCCGCCATTAGGA+AGG 0.529576 4_3:+59091737 None:intergenic
AGACATCAGCCTGCTTGGGA+AGG 0.531693 4_3:+59090357 None:intergenic
GTTGGTGGAAGCTTTGGTGC+TGG 0.534371 4_3:-59088469 Msa0651620:three_prime_UTR
AGTGTGATGGTCAAGGGAAA+TGG 0.534494 4_3:-59090200 Msa0651620:CDS
TACTCAACGTAACATTCCCT+TGG 0.534828 4_3:-59089203 Msa0651620:three_prime_UTR
ATCCGATAGACATACTTAGC+TGG 0.539877 4_3:-59091933 Msa0651620:five_prime_UTR
GTTGAGGCGTATGAGAGAGA+AGG 0.540040 4_3:-59088082 Msa0651620:three_prime_UTR
ACAGTGGAACAAGGAAGAAG+AGG 0.540270 4_3:-59088125 Msa0651620:intron
AGAGCCTTTGCCTTCTGGTG+GGG 0.540577 4_3:-59090555 Msa0651620:CDS
AATTGGAAGAAAATCAAGTT+GGG 0.540944 4_3:-59091803 Msa0651620:CDS
GTGGACCCGAAGCTGTGAAA+AGG 0.541444 4_3:-59091663 Msa0651620:CDS
GTTCTGTCTCAAATAGAGAA+AGG 0.541605 4_3:-59088265 Msa0651620:three_prime_UTR
TCATGCTCTTGCACTTGGGA+GGG 0.542037 4_3:-59089776 Msa0651620:CDS
TAATTGGAAGAAAATCAAGT+TGG 0.542509 4_3:-59091804 Msa0651620:CDS
AGGGATTCCCCAAATTGCAT+TGG 0.545998 4_3:-59090276 Msa0651620:CDS
CAGGCTATAATGTCTGCTCA+AGG 0.547634 4_3:-59090296 Msa0651620:CDS
ACTGGGATCGGTCCAGTGCA+TGG 0.555718 4_3:-59090527 Msa0651620:CDS
AACTGCTGCTTAAGATCGGT+AGG 0.556025 4_3:+59089637 None:intergenic
TGGTAGAATATTCTATAACC+AGG 0.556699 4_3:-59090315 Msa0651620:CDS
GTAGGAATTATTGGAAACAA+TGG 0.557477 4_3:-59089277 Msa0651620:three_prime_UTR
ATCAAACTGCTGCTTAAGAT+CGG 0.557686 4_3:+59089633 None:intergenic
AGTTCATTGACATCATATAG+TGG 0.558008 4_3:+59089673 None:intergenic
TAATGCTAGAATATCTGTGA+TGG 0.558539 4_3:-59088392 Msa0651620:three_prime_UTR
CGGTGCCTATATACCTGCTA+TGG 0.565180 4_3:-59090231 Msa0651620:CDS
TGTCTATCGGATCGGAGGGA+TGG 0.566042 4_3:+59091944 None:intergenic
AATTTCATGCTCTTGCACTT+GGG 0.567442 4_3:-59089780 Msa0651620:CDS
ACACTTTCATCGGCCATAGC+AGG 0.567737 4_3:+59090218 None:intergenic
TAAGAACCTGTGAAAGCTCA+AGG 0.569308 4_3:+59091572 None:intergenic
CTTCTTAACAGTAAATTGGA+GGG 0.574075 4_3:+59091778 None:intergenic
CTTGAGCAGACATTATAGCC+TGG 0.579349 4_3:+59090297 None:intergenic
TCAAGAATTTGCATATGGCT+GGG 0.580272 4_3:-59089747 Msa0651620:CDS
GTTCATAAGGTTCTTGCTGG+TGG 0.580761 4_3:-59091685 Msa0651620:CDS
CCCCAAATTGCATTGGTGGT+AGG 0.581932 4_3:-59090269 Msa0651620:CDS
CGATGAAAGTGTGATGGTCA+AGG 0.582644 4_3:-59090207 Msa0651620:CDS
CTGCTGCTTAAGATCGGTAG+GGG 0.584025 4_3:+59089639 None:intergenic
GTAGGCTCTTGCACTGCTGG+CGG 0.586542 4_3:-59090251 Msa0651620:CDS
TGGAGCTGACCTTAACAAGA+GGG 0.589538 4_3:+59090156 None:intergenic
ACTGCTGCTTAAGATCGGTA+GGG 0.591481 4_3:+59089638 None:intergenic
TTCCAGCTAAGTATGTCTAT+CGG 0.592315 4_3:+59091931 None:intergenic
AGGCTATAATGTCTGCTCAA+GGG 0.594394 4_3:-59090295 Msa0651620:CDS
CAATGAATCGGCTCTGAAAG+GGG 0.595804 4_3:-59089245 Msa0651620:three_prime_UTR
TTTATGTGAATGTGTTGCCA+TGG 0.601437 4_3:-59089497 Msa0651620:three_prime_UTR
TAATGTAGATTTGTTTACAT+GGG 0.605979 4_3:-59087864 Msa0651620:three_prime_UTR
GATGAAAGTGTGATGGTCAA+GGG 0.606022 4_3:-59090206 Msa0651620:CDS
ATATTCTAGCATTAGGCCAA+AGG 0.607064 4_3:+59088401 None:intergenic
GTTCAAAGCGAAAGTAGTTG+AGG 0.608997 4_3:-59088098 Msa0651620:three_prime_UTR
AAGATCTTTGGACAGCCTGT+AGG 0.611650 4_3:-59089295 Msa0651620:three_prime_UTR
GGCAAGAATTAATAATGCCG+TGG 0.613791 4_3:+59091884 None:intergenic
AAATGACCCTACTGTTAAAG+GGG 0.615388 4_3:-59090483 Msa0651620:CDS
AAGTATGTCTATCGGATCGG+AGG 0.618117 4_3:+59091939 None:intergenic
CCAGTCACAACCCCACCAGA+AGG 0.618817 4_3:+59090545 None:intergenic
AATGCTAGAATATCTGTGAT+GGG 0.621217 4_3:-59088391 Msa0651620:three_prime_UTR
CATAGCTCCGCCATTAGGAA+GGG 0.621393 4_3:+59091738 None:intergenic
TCTCAGAGCACAGGAGATTG+CGG 0.623049 4_3:-59090429 Msa0651620:CDS
AGCAGAGTTCAATGACTCCA+CGG 0.624090 4_3:-59091901 Msa0651620:five_prime_UTR
GAGCTGACCTTAACAAGAGG+GGG 0.626239 4_3:+59090158 None:intergenic
GCTAAGTATGTCTATCGGAT+CGG 0.627336 4_3:+59091936 None:intergenic
GGTTATAATACAGTGGAACA+AGG 0.634491 4_3:-59088134 Msa0651620:intron
TTGGGTGCCCTTCCTAATGG+CGG 0.634839 4_3:-59091745 Msa0651620:CDS
GAAACTGTATGGCACTGTGA+GGG 0.635294 4_3:-59089557 Msa0651620:CDS
CTGGAGCTGACCTTAACAAG+AGG 0.642396 4_3:+59090155 None:intergenic
AGGAAGTCCTTATTACTCAA+CGG 0.644858 4_3:-59088062 Msa0651620:three_prime_UTR
AGCTCAAGGAAAGAAGAACC+AGG 0.646634 4_3:+59091586 None:intergenic
AGTATGTCTATCGGATCGGA+GGG 0.646781 4_3:+59091940 None:intergenic
GATGTTCTGAAGAAAGACCA+AGG 0.657231 4_3:+59089186 None:intergenic
TTGCCACAAACATACAAAGT+CGG 0.657316 4_3:+59090504 None:intergenic
GTGTATCTTGTTGACAGTGG+TGG 0.659457 4_3:-59090386 Msa0651620:CDS
ATGTTCTGAAGAAAGACCAA+GGG 0.671246 4_3:+59089187 None:intergenic
GTCTCTGCGGAGGATTTGGG+AGG 0.673290 4_3:-59089958 Msa0651620:CDS
TGGAGAAGAAGTCTCTGCGG+AGG 0.674342 4_3:-59089968 Msa0651620:CDS
AATGACCCTACTGTTAAAGG+GGG 0.679889 4_3:-59090482 Msa0651620:CDS
GTCCTTATTACTCAACGGCG+AGG 0.680927 4_3:-59088057 Msa0651620:three_prime_UTR
GGAGCTGACCTTAACAAGAG+GGG 0.682710 4_3:+59090157 None:intergenic
ACAACCCCACCAGAAGGCAA+AGG 0.683577 4_3:+59090551 None:intergenic
GTAGGTGGGCTCAAAATCCG+AGG 0.686992 4_3:-59088789 Msa0651620:intron
CTGTCAACAAGATACACACA+CGG 0.687428 4_3:+59090392 None:intergenic
GATGGCTGTATCTTGCGCAA+AGG 0.692151 4_3:-59088732 Msa0651620:intron
AGAAACTGTATGGCACTGTG+AGG 0.693839 4_3:-59089558 Msa0651620:CDS
CCTACCACCAATGCAATTTG+GGG 0.702673 4_3:+59090269 None:intergenic
TATGGCCGATGAAAGTGTGA+TGG 0.707459 4_3:-59090213 Msa0651620:CDS
TACTGGAGAAGAAGTCTCTG+CGG 0.708370 4_3:-59089971 Msa0651620:CDS
GCTGGAAACTATGCAATGTG+TGG 0.713945 4_3:-59088451 Msa0651620:three_prime_UTR
TGTGTGTATCTTGTTGACAG+TGG 0.716426 4_3:-59090389 Msa0651620:CDS
ATGACCCTACTGTTAAAGGG+GGG 0.731933 4_3:-59090481 Msa0651620:CDS
AAGTTGACATATGATCAGGA+AGG 0.735721 4_3:+59087771 None:intergenic
GCTAGAATATCTGTGATGGG+TGG 0.747465 4_3:-59088388 Msa0651620:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTTTTATTAACTTTA+TGG - chr4_3:59088177-59088196 Msa0651620:intron 10.0%
!!! ATGAATTAAAAAAATTTGTT+TGG - chr4_3:59090554-59090573 Msa0651620:CDS 10.0%
!! AAATTGTAGTATATTTATAA+AGG - chr4_3:59091150-59091169 Msa0651620:intron 10.0%
!!! AGTTATCTAACATAATTTTA+TGG + chr4_3:59088480-59088499 None:intergenic 15.0%
!!! AATACATCAAATTCTTTTTA+TGG - chr4_3:59088898-59088917 Msa0651620:intron 15.0%
!!! ATACATCAAATTCTTTTTAT+GGG - chr4_3:59088899-59088918 Msa0651620:intron 15.0%
!! TTCAGTTTATCATAAAATAT+AGG + chr4_3:59088950-59088969 None:intergenic 15.0%
!! CATAAATACAATGATTAAAA+CGG + chr4_3:59090192-59090211 None:intergenic 15.0%
!! AATATAAAAATAAAGTTCCA+TGG + chr4_3:59090226-59090245 None:intergenic 15.0%
!! TTTATCTTGTGATAAATTAA+TGG - chr4_3:59091517-59091536 Msa0651620:intron 15.0%
!! ACAAACAAAAATATGTAAAA+GGG - chr4_3:59091891-59091910 Msa0651620:five_prime_UTR 15.0%
!! GAAAACATGTTTAAACTAAT+TGG - chr4_3:59087883-59087902 Msa0651620:three_prime_UTR 20.0%
!! AACATAAAAAGTAGTAGTAA+TGG + chr4_3:59088164-59088183 None:intergenic 20.0%
!! TGAAAACAACTTATAACTTA+CGG - chr4_3:59088502-59088521 Msa0651620:intron 20.0%
!! ATATATGATATAAGTGTCTA+TGG + chr4_3:59088574-59088593 None:intergenic 20.0%
!!! TTTAGACAAACAAATTTGTT+GGG + chr4_3:59088824-59088843 None:intergenic 20.0%
!! ATTTAGACAAACAAATTTGT+TGG + chr4_3:59088825-59088844 None:intergenic 20.0%
!! TTTGTATTTACCATTCATTT+GGG - chr4_3:59088992-59089011 Msa0651620:intron 20.0%
!! AGAAATGAGAAATACAAAAA+TGG - chr4_3:59089053-59089072 Msa0651620:intron 20.0%
!! AGAAAATACATTATCACAAA+CGG + chr4_3:59089663-59089682 None:intergenic 20.0%
!! CATTAATTGATTGACATTAT+AGG - chr4_3:59089705-59089724 Msa0651620:CDS 20.0%
!! AAATACAAGTTATGAGTATA+AGG - chr4_3:59090005-59090024 Msa0651620:intron 20.0%
!!! TGGAATTTTATTCAATGAAT+CGG - chr4_3:59090446-59090465 Msa0651620:CDS 20.0%
!!! TTTAACAATTCTTGATTTGA+GGG + chr4_3:59090795-59090814 None:intergenic 20.0%
!! TGTTTATAGAAAGAATATCT+AGG + chr4_3:59090818-59090837 None:intergenic 20.0%
!!! ATTAGTTGATAATATTCATC+AGG - chr4_3:59091407-59091426 Msa0651620:intron 20.0%
!! TCAGGTAAAAATATTGTTAT+TGG - chr4_3:59091482-59091501 Msa0651620:intron 20.0%
!!! CAGGTAAAAATATTGTTATT+GGG - chr4_3:59091483-59091502 Msa0651620:intron 20.0%
!!! TAATGTAGATTTGTTTACAT+GGG - chr4_3:59091839-59091858 Msa0651620:five_prime_UTR 20.0%
!! GACAAACAAAAATATGTAAA+AGG - chr4_3:59091890-59091909 Msa0651620:five_prime_UTR 20.0%
!! TAAACATGTTTTCTCTTCTA+TGG + chr4_3:59087876-59087895 None:intergenic 25.0%
! TAATTGGAAGAAAATCAAGT+TGG - chr4_3:59087899-59087918 Msa0651620:three_prime_UTR 25.0%
! AATTGGAAGAAAATCAAGTT+GGG - chr4_3:59087900-59087919 Msa0651620:three_prime_UTR 25.0%
! TTCTCTTCTTAACAGTAAAT+TGG + chr4_3:59087932-59087951 None:intergenic 25.0%
! TTAAGAAGAGAATTGTGTTT+GGG - chr4_3:59087940-59087959 Msa0651620:three_prime_UTR 25.0%
!! CCTTAATATCTAAAGTATGT+CGG - chr4_3:59088362-59088381 Msa0651620:intron 25.0%
!! GTAAATACAAAGAGTATGTT+TGG + chr4_3:59088983-59089002 None:intergenic 25.0%
! CTTTGTATTTACCATTCATT+TGG - chr4_3:59088991-59089010 Msa0651620:intron 25.0%
! AGATGTTTCTTAACTGTAAT+AGG + chr4_3:59089257-59089276 None:intergenic 25.0%
! TAGTTTCACATAAAGGATAT+TGG + chr4_3:59089592-59089611 None:intergenic 25.0%
! TTTAATTCATACCATGAATC+CGG + chr4_3:59090544-59090563 None:intergenic 25.0%
!! GTTTAACAATTCTTGATTTG+AGG + chr4_3:59090796-59090815 None:intergenic 25.0%
! AACTATAACACATGTCTATT+TGG - chr4_3:59090892-59090911 Msa0651620:intron 25.0%
!! CCAACAATTATAGTGATTTT+AGG + chr4_3:59091219-59091238 None:intergenic 25.0%
! CCTAAAATCACTATAATTGT+TGG - chr4_3:59091216-59091235 Msa0651620:intron 25.0%
! AAAATCACTATAATTGTTGG+TGG - chr4_3:59091219-59091238 Msa0651620:intron 25.0%
! ATTTGTCTCAATGTATATCA+TGG - chr4_3:59091548-59091567 Msa0651620:intron 25.0%
! ATATCATGGTTATAATACAG+TGG - chr4_3:59091562-59091581 Msa0651620:intron 25.0%
! CATTCTAAATACACCATATT+TGG + chr4_3:59091763-59091782 None:intergenic 25.0%
! ACAAATCTACATTAGACTTT+AGG + chr4_3:59091833-59091852 None:intergenic 25.0%
!! CTAATGTAGATTTGTTTACA+TGG - chr4_3:59091838-59091857 Msa0651620:five_prime_UTR 25.0%
ACCTTTCTTCTTCTAAGTAA+AGG + chr4_3:59087843-59087862 None:intergenic 30.0%
CTTCTTAACAGTAAATTGGA+GGG + chr4_3:59087928-59087947 None:intergenic 30.0%
TCTTCTTAACAGTAAATTGG+AGG + chr4_3:59087929-59087948 None:intergenic 30.0%
GTTAAGAAGAGAATTGTGTT+TGG - chr4_3:59087939-59087958 Msa0651620:three_prime_UTR 30.0%
CAAGTAACTATTAGACTAGT+TGG - chr4_3:59088246-59088265 Msa0651620:three_prime_UTR 30.0%
TCATAGCTGAAAATAGCTTA+TGG + chr4_3:59088301-59088320 None:intergenic 30.0%
AATCCAACAAACATTTGACA+TGG - chr4_3:59088328-59088347 Msa0651620:intron 30.0%
CCGACATACTTTAGATATTA+AGG + chr4_3:59088365-59088384 None:intergenic 30.0%
! ATGTCGGAAAATAGTGTTTT+TGG - chr4_3:59088378-59088397 Msa0651620:intron 30.0%
!! ATTCATTTTTCCTCCAATGT+AGG + chr4_3:59088663-59088682 None:intergenic 30.0%
TTGACCAATATATAAGTGAG+AGG - chr4_3:59088691-59088710 Msa0651620:intron 30.0%
!! ACCTAAAACTTTGAGACATT+GGG + chr4_3:59088726-59088745 None:intergenic 30.0%
!! TACCTAAAACTTTGAGACAT+TGG + chr4_3:59088727-59088746 None:intergenic 30.0%
!!! CAAAGTTTTAGGTAAAGATG+TGG - chr4_3:59088733-59088752 Msa0651620:three_prime_UTR 30.0%
ATTGCTACACATAACTGTTT+AGG - chr4_3:59088845-59088864 Msa0651620:intron 30.0%
TTGTGTGTTTATCTCAAGAA+AGG - chr4_3:59089077-59089096 Msa0651620:intron 30.0%
! TTTCCGGATAAGGAAAATTT+TGG - chr4_3:59089368-59089387 Msa0651620:three_prime_UTR 30.0%
! CTACCAAAATTTTCCTTATC+CGG + chr4_3:59089374-59089393 None:intergenic 30.0%
TGGTAGAATATTCTATAACC+AGG - chr4_3:59089388-59089407 Msa0651620:three_prime_UTR 30.0%
!!! AATGGCACTATTTTTTTAGC+AGG - chr4_3:59089521-59089540 Msa0651620:exon 30.0%
!!! ATGGCACTATTTTTTTAGCA+GGG - chr4_3:59089522-59089541 Msa0651620:exon 30.0%
ATCCTTTATGTGAAACTATC+TGG - chr4_3:59089594-59089613 Msa0651620:CDS 30.0%
!! TATTTTGCTCAAGGTATTTG+TGG - chr4_3:59089805-59089824 Msa0651620:intron 30.0%
AGTTCATTGACATCATATAG+TGG + chr4_3:59090033-59090052 None:intergenic 30.0%
GATGAATTCAAGAAACTGTA+TGG - chr4_3:59090135-59090154 Msa0651620:intron 30.0%
CTGCACATAGATTTCAAATA+AGG + chr4_3:59090367-59090386 None:intergenic 30.0%
TTGTTTCCAATAATTCCTAC+AGG + chr4_3:59090426-59090445 None:intergenic 30.0%
GTAGGAATTATTGGAAACAA+TGG - chr4_3:59090426-59090445 Msa0651620:CDS 30.0%
AGTTAATGTCATCCATCATT+TGG - chr4_3:59090687-59090706 Msa0651620:intron 30.0%
CAACAACTATGACTGTAATT+AGG + chr4_3:59090716-59090735 None:intergenic 30.0%
TTGTCTGGAAATGATTAGAA+TGG - chr4_3:59090733-59090752 Msa0651620:intron 30.0%
ACAAATTTGAGCTAAGATGT+TGG - chr4_3:59090835-59090854 Msa0651620:intron 30.0%
! TTTTCATCAAACTACTAGCA+GGG + chr4_3:59090868-59090887 None:intergenic 30.0%
! TTTTTCATCAAACTACTAGC+AGG + chr4_3:59090869-59090888 None:intergenic 30.0%
ATAACACATGTCTATTTGGT+AGG - chr4_3:59090896-59090915 Msa0651620:intron 30.0%
GAATGTTATAAATAGTGTGC+TGG + chr4_3:59091007-59091026 None:intergenic 30.0%
ATCACAGATATTCTAGCATT+AGG + chr4_3:59091312-59091331 None:intergenic 30.0%
TAATGCTAGAATATCTGTGA+TGG - chr4_3:59091311-59091330 Msa0651620:intron 30.0%
AATGCTAGAATATCTGTGAT+GGG - chr4_3:59091312-59091331 Msa0651620:intron 30.0%
CATGATTCCTTACAAATTAC+TGG - chr4_3:59091363-59091382 Msa0651620:intron 30.0%
AAAGGCAATAAGAAAAAGCA+AGG - chr4_3:59091456-59091475 Msa0651620:intron 30.0%
TAAGAAAAAGCAAGGAATTC+AGG - chr4_3:59091464-59091483 Msa0651620:intron 30.0%
! AAATATTGTTATTGGGAGCA+AGG - chr4_3:59091490-59091509 Msa0651620:intron 30.0%
TTCCAGCTAAGTATGTCTAT+CGG + chr4_3:59087775-59087794 None:intergenic 35.0%
GCCTTTACTTAGAAGAAGAA+AGG - chr4_3:59087839-59087858 Msa0651620:three_prime_UTR 35.0%
ACTCCAATCTCATGTTCATA+AGG - chr4_3:59088005-59088024 Msa0651620:three_prime_UTR 35.0%
GAACCTTATGAACATGAGAT+TGG + chr4_3:59088011-59088030 None:intergenic 35.0%
! ACTATTCCTTTTCACAGCTT+CGG + chr4_3:59088049-59088068 None:intergenic 35.0%
AGACGATCAATTCTTTCTCT+TGG + chr4_3:59088090-59088109 None:intergenic 35.0%
AAGCTCTCAAAAACACCTTA+TGG - chr4_3:59088270-59088289 Msa0651620:three_prime_UTR 35.0%
!!! ATTTTGTTGTTGCAAGTGTG+AGG - chr4_3:59088625-59088644 Msa0651620:intron 35.0%
GAGTCCTCTCACTTATATAT+TGG + chr4_3:59088698-59088717 None:intergenic 35.0%
! ACCCAATGTCTCAAAGTTTT+AGG - chr4_3:59088722-59088741 Msa0651620:intron 35.0%
! TGGTGTTAAACTAACTTGTG+TGG - chr4_3:59088753-59088772 Msa0651620:three_prime_UTR 35.0%
!! ACAAATTTGTTGGGTCATGA+GGG + chr4_3:59088815-59088834 None:intergenic 35.0%
!! AACAAATTTGTTGGGTCATG+AGG + chr4_3:59088816-59088835 None:intergenic 35.0%
! TTACCATTCATTTGGGTTTG+TGG - chr4_3:59088999-59089018 Msa0651620:intron 35.0%
TTTCCACAAACCCAAATGAA+TGG + chr4_3:59089005-59089024 None:intergenic 35.0%
TTGCCACAAACATACAAAGT+CGG + chr4_3:59089202-59089221 None:intergenic 35.0%
CAAATGACCCTACTGTTAAA+GGG - chr4_3:59089219-59089238 Msa0651620:three_prime_UTR 35.0%
AAATGACCCTACTGTTAAAG+GGG - chr4_3:59089220-59089239 Msa0651620:three_prime_UTR 35.0%
AGCCAGATAGTTTCACATAA+AGG + chr4_3:59089599-59089618 None:intergenic 35.0%
! GTTTCAGACTATTTTGCTCA+AGG - chr4_3:59089796-59089815 Msa0651620:intron 35.0%
ACAATGTCACTAATACAGAC+TGG + chr4_3:59089880-59089899 None:intergenic 35.0%
AGAGCATGAAATTCATCTAC+AGG + chr4_3:59089916-59089935 None:intergenic 35.0%
AATTTCATGCTCTTGCACTT+GGG - chr4_3:59089923-59089942 Msa0651620:CDS 35.0%
CATCGTCAAGAATTTGCATA+TGG - chr4_3:59089951-59089970 Msa0651620:CDS 35.0%
TCAAGAATTTGCATATGGCT+GGG - chr4_3:59089956-59089975 Msa0651620:CDS 35.0%
! ATCAAACTGCTGCTTAAGAT+CGG + chr4_3:59090073-59090092 None:intergenic 35.0%
TTTATGTGAATGTGTTGCCA+TGG - chr4_3:59090206-59090225 Msa0651620:CDS 35.0%
! ATGAGTTGACAGACCTTTAT+CGG - chr4_3:59090259-59090278 Msa0651620:CDS 35.0%
!!! CTTTATCGGTTGTTGGTTTT+CGG - chr4_3:59090273-59090292 Msa0651620:CDS 35.0%
!!! TTTATCGGTTGTTGGTTTTC+GGG - chr4_3:59090274-59090293 Msa0651620:CDS 35.0%
CGGGTTTCACAATGAATATT+TGG - chr4_3:59090293-59090312 Msa0651620:CDS 35.0%
! ACAGGTTTTGCAAAGATCTT+TGG - chr4_3:59090396-59090415 Msa0651620:CDS 35.0%
!! ATGTTCTGAAGAAAGACCAA+GGG + chr4_3:59090519-59090538 None:intergenic 35.0%
ATTCTGACTTCAGAGAAGAT+TGG - chr4_3:59090608-59090627 Msa0651620:intron 35.0%
GTAATTAGGACACCAAATGA+TGG + chr4_3:59090702-59090721 None:intergenic 35.0%
TTACAGTCATAGTTGTTGTC+TGG - chr4_3:59090718-59090737 Msa0651620:intron 35.0%
GGAAATGATTAGAATGGTGA+AGG - chr4_3:59090739-59090758 Msa0651620:intron 35.0%
TTCGCATAAATATCTGCTAC+AGG - chr4_3:59091191-59091210 Msa0651620:intron 35.0%
! ATAATTGTTGGTGGAAGCTT+TGG - chr4_3:59091228-59091247 Msa0651620:intron 35.0%
ATATTCTAGCATTAGGCCAA+AGG + chr4_3:59091305-59091324 None:intergenic 35.0%
TCCTTACAAATTACTGGACT+TGG - chr4_3:59091369-59091388 Msa0651620:intron 35.0%
! TCCAAGTCCAGTAATTTGTA+AGG + chr4_3:59091373-59091392 None:intergenic 35.0%
GTTCTGTCTCAAATAGAGAA+AGG - chr4_3:59091438-59091457 Msa0651620:intron 35.0%
GGTTATAATACAGTGGAACA+AGG - chr4_3:59091569-59091588 Msa0651620:intron 35.0%
AGGAAGTCCTTATTACTCAA+CGG - chr4_3:59091641-59091660 Msa0651620:CDS 35.0%
!! ATCACTTTTCTTGTATCAGC+TGG + chr4_3:59091696-59091715 None:intergenic 35.0%
GCTGATACAAGAAAAGTGAT+TGG - chr4_3:59091696-59091715 Msa0651620:CDS 35.0%
! ATTTGGTATTTTCTGTCGCA+CGG + chr4_3:59091746-59091765 None:intergenic 35.0%
GCGACAGAAAATACCAAATA+TGG - chr4_3:59091747-59091766 Msa0651620:CDS 35.0%
ATTTGTTTACATGGGAAGAG+AGG - chr4_3:59091847-59091866 Msa0651620:five_prime_UTR 35.0%
AAGTTGACATATGATCAGGA+AGG + chr4_3:59091935-59091954 None:intergenic 35.0%
! TTGCAAGTTGACATATGATC+AGG + chr4_3:59091939-59091958 None:intergenic 35.0%
GCTAAGTATGTCTATCGGAT+CGG + chr4_3:59087770-59087789 None:intergenic 40.0%
ATCCGATAGACATACTTAGC+TGG - chr4_3:59087770-59087789 Msa0651620:three_prime_UTR 40.0%
GGCAAGAATTAATAATGCCG+TGG + chr4_3:59087822-59087841 None:intergenic 40.0%
CATGTTCATAAGGTTCTTGC+TGG - chr4_3:59088015-59088034 Msa0651620:three_prime_UTR 40.0%
! CTATTCCTTTTCACAGCTTC+GGG + chr4_3:59088048-59088067 None:intergenic 40.0%
ATTGATCGTCTACTTGATCC+TGG - chr4_3:59088099-59088118 Msa0651620:three_prime_UTR 40.0%
TTCTTTCCTTGAGCTTTCAC+AGG - chr4_3:59088125-59088144 Msa0651620:intron 40.0%
TAAGAACCTGTGAAAGCTCA+AGG + chr4_3:59088134-59088153 None:intergenic 40.0%
TAGCTTATGGACATGCCATA+AGG + chr4_3:59088288-59088307 None:intergenic 40.0%
GTGCCATGTCAAATGTTTGT+TGG + chr4_3:59088334-59088353 None:intergenic 40.0%
! ATTTGTCTGAGATGTACGCA+GGG - chr4_3:59088404-59088423 Msa0651620:three_prime_UTR 40.0%
! TTTAAAGCATGAGCACCTCT+AGG + chr4_3:59088441-59088460 None:intergenic 40.0%
! GTGAGTTTGAAGTCCTACAT+TGG - chr4_3:59088647-59088666 Msa0651620:intron 40.0%
! AGTTTGAAGTCCTACATTGG+AGG - chr4_3:59088650-59088669 Msa0651620:intron 40.0%
!! CAAATTTGTTGGGTCATGAG+GGG + chr4_3:59088814-59088833 None:intergenic 40.0%
GCAAATGACCCTACTGTTAA+AGG - chr4_3:59089218-59089237 Msa0651620:three_prime_UTR 40.0%
AATGACCCTACTGTTAAAGG+GGG - chr4_3:59089221-59089240 Msa0651620:three_prime_UTR 40.0%
TAAGAAACATCTCAGAGCAC+AGG - chr4_3:59089265-59089284 Msa0651620:three_prime_UTR 40.0%
CTGTCAACAAGATACACACA+CGG + chr4_3:59089314-59089333 None:intergenic 40.0%
TGTGTGTATCTTGTTGACAG+TGG - chr4_3:59089314-59089333 Msa0651620:three_prime_UTR 40.0%
AGGCTATAATGTCTGCTCAA+GGG - chr4_3:59089408-59089427 Msa0651620:three_prime_UTR 40.0%
CTTGACCATCACACTTTCAT+CGG + chr4_3:59089498-59089517 None:intergenic 40.0%
! GATGAAAGTGTGATGGTCAA+GGG - chr4_3:59089497-59089516 Msa0651620:three_prime_UTR 40.0%
!! GAGCATAAGATAAGAGTGTC+TGG + chr4_3:59089570-59089589 None:intergenic 40.0%
TTGACATTATAGGCTGCTAC+TGG - chr4_3:59089715-59089734 Msa0651620:CDS 40.0%
! TTTGCTCAAGGTATTTGTGG+TGG - chr4_3:59089808-59089827 Msa0651620:intron 40.0%
GAATTTCATGCTCTTGCACT+TGG - chr4_3:59089922-59089941 Msa0651620:CDS 40.0%
GTCAAGAATTTGCATATGGC+TGG - chr4_3:59089955-59089974 Msa0651620:CDS 40.0%
CAATGCGAGAAATCACTTCT+CGG + chr4_3:59090098-59090117 None:intergenic 40.0%
GTGATTTCTCGCATTGTTGA+CGG - chr4_3:59090102-59090121 Msa0651620:intron 40.0%
CGAAAACCAACAACCGATAA+AGG + chr4_3:59090275-59090294 None:intergenic 40.0%
!! TACAGCTTGCTGCATATACT+TGG + chr4_3:59090325-59090344 None:intergenic 40.0%
TATGTGCAGACTCTTGTAAC+AGG - chr4_3:59090378-59090397 Msa0651620:CDS 40.0%
!! TTCAATGAATCGGCTCTGAA+AGG - chr4_3:59090456-59090475 Msa0651620:CDS 40.0%
!! TCAATGAATCGGCTCTGAAA+GGG - chr4_3:59090457-59090476 Msa0651620:CDS 40.0%
TACTCAACGTAACATTCCCT+TGG - chr4_3:59090500-59090519 Msa0651620:CDS 40.0%
!! GATGTTCTGAAGAAAGACCA+AGG + chr4_3:59090520-59090539 None:intergenic 40.0%
GTCTTTCTTCAGAACATCAC+CGG - chr4_3:59090522-59090541 Msa0651620:CDS 40.0%
!! AATGATGTTCTGAGGAGAGA+AGG + chr4_3:59090636-59090655 None:intergenic 40.0%
TTCTCTCCTCAGAACATCAT+TGG - chr4_3:59090635-59090654 Msa0651620:intron 40.0%
TCCTCAGAACATCATTGGAT+TGG - chr4_3:59090640-59090659 Msa0651620:intron 40.0%
ACCAATCCAATGATGTTCTG+AGG + chr4_3:59090644-59090663 None:intergenic 40.0%
ACACATGTCTATTTGGTAGG+TGG - chr4_3:59090899-59090918 Msa0651620:intron 40.0%
CACATGTCTATTTGGTAGGT+GGG - chr4_3:59090900-59090919 Msa0651620:intron 40.0%
AGCAAAGTCAGGTGCAAAAA+TGG - chr4_3:59090947-59090966 Msa0651620:intron 40.0%
!!! TTCGCTGCATGTGTTGTTTT+GGG - chr4_3:59091054-59091073 Msa0651620:intron 40.0%
GAACATGAAGTTCGGACTAT+AGG + chr4_3:59091283-59091302 None:intergenic 40.0%
GATAATATTCATCAGGCTGC+TGG - chr4_3:59091414-59091433 Msa0651620:intron 40.0%
GTTCAAAGCGAAAGTAGTTG+AGG - chr4_3:59091605-59091624 Msa0651620:CDS 40.0%
AGTATGTCTATCGGATCGGA+GGG + chr4_3:59087766-59087785 None:intergenic 45.0%
AAGTATGTCTATCGGATCGG+AGG + chr4_3:59087767-59087786 None:intergenic 45.0%
AGCAGAGTTCAATGACTCCA+CGG - chr4_3:59087802-59087821 Msa0651620:three_prime_UTR 45.0%
GTTCATAAGGTTCTTGCTGG+TGG - chr4_3:59088018-59088037 Msa0651620:three_prime_UTR 45.0%
AGCTCAAGGAAAGAAGAACC+AGG + chr4_3:59088120-59088139 None:intergenic 45.0%
! CATTTGTCTGAGATGTACGC+AGG - chr4_3:59088403-59088422 Msa0651620:three_prime_UTR 45.0%
AGGGACACTCATAATCCTAG+AGG - chr4_3:59088423-59088442 Msa0651620:three_prime_UTR 45.0%
! CTAACTTGTGTGGTTGCTCA+TGG - chr4_3:59088763-59088782 Msa0651620:three_prime_UTR 45.0%
TATGAAGAGCCTTTGCCTTC+TGG - chr4_3:59089143-59089162 Msa0651620:intron 45.0%
! TGGCCGACTTTGTATGTTTG+TGG - chr4_3:59089196-59089215 Msa0651620:three_prime_UTR 45.0%
ATGACCCTACTGTTAAAGGG+GGG - chr4_3:59089222-59089241 Msa0651620:three_prime_UTR 45.0%
AAGTCCCCCCTTTAACAGTA+GGG + chr4_3:59089229-59089248 None:intergenic 45.0%
TAAGTCCCCCCTTTAACAGT+AGG + chr4_3:59089230-59089249 None:intergenic 45.0%
GTGTATCTTGTTGACAGTGG+TGG - chr4_3:59089317-59089336 Msa0651620:three_prime_UTR 45.0%
CTTGAGCAGACATTATAGCC+TGG + chr4_3:59089409-59089428 None:intergenic 45.0%
CAGGCTATAATGTCTGCTCA+AGG - chr4_3:59089407-59089426 Msa0651620:three_prime_UTR 45.0%
AGGGATTCCCCAAATTGCAT+TGG - chr4_3:59089427-59089446 Msa0651620:three_prime_UTR 45.0%
GATTCCCCAAATTGCATTGG+TGG - chr4_3:59089430-59089449 Msa0651620:three_prime_UTR 45.0%
CCTACCACCAATGCAATTTG+GGG + chr4_3:59089437-59089456 None:intergenic 45.0%
GCCTACCACCAATGCAATTT+GGG + chr4_3:59089438-59089457 None:intergenic 45.0%
AGCCTACCACCAATGCAATT+TGG + chr4_3:59089439-59089458 None:intergenic 45.0%
ATCGGCCATAGCAGGTATAT+AGG + chr4_3:59089480-59089499 None:intergenic 45.0%
! TATGGCCGATGAAAGTGTGA+TGG - chr4_3:59089490-59089509 Msa0651620:three_prime_UTR 45.0%
! CGATGAAAGTGTGATGGTCA+AGG - chr4_3:59089496-59089515 Msa0651620:three_prime_UTR 45.0%
AGTGTGATGGTCAAGGGAAA+TGG - chr4_3:59089503-59089522 Msa0651620:three_prime_UTR 45.0%
TGGAGCTGACCTTAACAAGA+GGG + chr4_3:59089550-59089569 None:intergenic 45.0%
TACTGGAGAAGAAGTCTCTG+CGG - chr4_3:59089732-59089751 Msa0651620:CDS 45.0%
TGCAGTACACTGCAAGACTT+CGG - chr4_3:59089771-59089790 Msa0651620:CDS 45.0%
GGTGGATATGCACATCTAAG+TGG - chr4_3:59089826-59089845 Msa0651620:intron 45.0%
! ACTGCTGCTTAAGATCGGTA+GGG + chr4_3:59090068-59090087 None:intergenic 45.0%
! AACTGCTGCTTAAGATCGGT+AGG + chr4_3:59090069-59090088 None:intergenic 45.0%
AGAAACTGTATGGCACTGTG+AGG - chr4_3:59090145-59090164 Msa0651620:intron 45.0%
GAAACTGTATGGCACTGTGA+GGG - chr4_3:59090146-59090165 Msa0651620:intron 45.0%
CTGTCAACTCATCAAGCTTC+AGG + chr4_3:59090251-59090270 None:intergenic 45.0%
! GACAGACCTTTATCGGTTGT+TGG - chr4_3:59090266-59090285 Msa0651620:CDS 45.0%
AAGATCTTTGGACAGCCTGT+AGG - chr4_3:59090408-59090427 Msa0651620:CDS 45.0%
GGACAGCCTGTAGGAATTAT+TGG - chr4_3:59090417-59090436 Msa0651620:CDS 45.0%
!! CAATGAATCGGCTCTGAAAG+GGG - chr4_3:59090458-59090477 Msa0651620:CDS 45.0%
TCAGAACATCACCGGATTCA+TGG - chr4_3:59090530-59090549 Msa0651620:CDS 45.0%
! CTTTGCTATGCCATTTGCCT+CGG + chr4_3:59090934-59090953 None:intergenic 45.0%
GCAAATGGCATAGCAAAGTC+AGG - chr4_3:59090936-59090955 Msa0651620:intron 45.0%
GTCAGGTGCAAAAATGGTGA+TGG - chr4_3:59090953-59090972 Msa0651620:intron 45.0%
GTATCTTGCGCAAAGGTTAG+TGG - chr4_3:59090978-59090997 Msa0651620:intron 45.0%
!!! GTTCGCTGCATGTGTTGTTT+TGG - chr4_3:59091053-59091072 Msa0651620:intron 45.0%
!!! TCGCTGCATGTGTTGTTTTG+GGG - chr4_3:59091055-59091074 Msa0651620:intron 45.0%
GCTGGAAACTATGCAATGTG+TGG - chr4_3:59091252-59091271 Msa0651620:intron 45.0%
GTCCGAACTTCATGTTCCTT+TGG - chr4_3:59091286-59091305 Msa0651620:intron 45.0%
GGCCAAAGGAACATGAAGTT+CGG + chr4_3:59091291-59091310 None:intergenic 45.0%
! GCTAGAATATCTGTGATGGG+TGG - chr4_3:59091315-59091334 Msa0651620:intron 45.0%
ACAGTGGAACAAGGAAGAAG+AGG - chr4_3:59091578-59091597 Msa0651620:intron 45.0%
! ATTTTCTGTCGCACGGTTCA+AGG + chr4_3:59091739-59091758 None:intergenic 45.0%
TGTTTACATGGGAAGAGAGG+TGG - chr4_3:59091850-59091869 Msa0651620:five_prime_UTR 45.0%
GTTTACATGGGAAGAGAGGT+GGG - chr4_3:59091851-59091870 Msa0651620:five_prime_UTR 45.0%
TGTTTGGGTGCCCTTCCTAA+TGG - chr4_3:59087955-59087974 Msa0651620:three_prime_UTR 50.0%
CATAGCTCCGCCATTAGGAA+GGG + chr4_3:59087968-59087987 None:intergenic 50.0%
TGTTCCATAGCTCCGCCATT+AGG + chr4_3:59087973-59087992 None:intergenic 50.0%
CATAAGGTTCTTGCTGGTGG+TGG - chr4_3:59088021-59088040 Msa0651620:three_prime_UTR 50.0%
TGGTTGCTCATGGCCTAATG+TGG - chr4_3:59088773-59088792 Msa0651620:three_prime_UTR 50.0%
CTCAGGGGATCATCCACATT+AGG + chr4_3:59088789-59088808 None:intergenic 50.0%
AAGAGCCTTTGCCTTCTGGT+GGG - chr4_3:59089147-59089166 Msa0651620:intron 50.0%
ATACAAAGTCGGCCATGCAC+TGG + chr4_3:59089191-59089210 None:intergenic 50.0%
TCTCAGAGCACAGGAGATTG+CGG - chr4_3:59089274-59089293 Msa0651620:three_prime_UTR 50.0%
GGAAAGACATCAGCCTGCTT+GGG + chr4_3:59089353-59089372 None:intergenic 50.0%
CAAGCAGGCTGATGTCTTTC+CGG - chr4_3:59089352-59089371 Msa0651620:three_prime_UTR 50.0%
GGCTGATGTCTTTCCGGATA+AGG - chr4_3:59089358-59089377 Msa0651620:three_prime_UTR 50.0%
! CCCCAAATTGCATTGGTGGT+AGG - chr4_3:59089434-59089453 Msa0651620:three_prime_UTR 50.0%
CGGTGCCTATATACCTGCTA+TGG - chr4_3:59089472-59089491 Msa0651620:three_prime_UTR 50.0%
ACACTTTCATCGGCCATAGC+AGG + chr4_3:59089488-59089507 None:intergenic 50.0%
GAGCTGACCTTAACAAGAGG+GGG + chr4_3:59089548-59089567 None:intergenic 50.0%
GGAGCTGACCTTAACAAGAG+GGG + chr4_3:59089549-59089568 None:intergenic 50.0%
CTGGAGCTGACCTTAACAAG+AGG + chr4_3:59089551-59089570 None:intergenic 50.0%
AGAAGTCTCTGCGGAGGATT+TGG - chr4_3:59089741-59089760 Msa0651620:CDS 50.0%
GAAGTCTCTGCGGAGGATTT+GGG - chr4_3:59089742-59089761 Msa0651620:CDS 50.0%
GCAGTACACTGCAAGACTTC+GGG - chr4_3:59089772-59089791 Msa0651620:CDS 50.0%
TTCATGCTCTTGCACTTGGG+AGG - chr4_3:59089926-59089945 Msa0651620:CDS 50.0%
TCATGCTCTTGCACTTGGGA+GGG - chr4_3:59089927-59089946 Msa0651620:CDS 50.0%
GGGAGAGATGTCTCGACAAA+TGG - chr4_3:59089976-59089995 Msa0651620:CDS 50.0%
! CTGCTGCTTAAGATCGGTAG+GGG + chr4_3:59090067-59090086 None:intergenic 50.0%
GGCTCAAAATCCGAGGCAAA+TGG - chr4_3:59090921-59090940 Msa0651620:intron 50.0%
GATGGCTGTATCTTGCGCAA+AGG - chr4_3:59090971-59090990 Msa0651620:intron 50.0%
!!! GTGTTGTTTTGGGGCAGTGA+CGG - chr4_3:59091064-59091083 Msa0651620:intron 50.0%
GTTGAGGCGTATGAGAGAGA+AGG - chr4_3:59091621-59091640 Msa0651620:CDS 50.0%
GTCCTTATTACTCAACGGCG+AGG - chr4_3:59091646-59091665 Msa0651620:CDS 50.0%
AGCCTCGCCGTTGAGTAATA+AGG + chr4_3:59091651-59091670 None:intergenic 50.0%
ATTACTCAACGGCGAGGCTT+TGG - chr4_3:59091652-59091671 Msa0651620:CDS 50.0%
TTACTCAACGGCGAGGCTTT+GGG - chr4_3:59091653-59091672 Msa0651620:CDS 50.0%
TGTCTATCGGATCGGAGGGA+TGG + chr4_3:59087762-59087781 None:intergenic 55.0%
TTGGGTGCCCTTCCTAATGG+CGG - chr4_3:59087958-59087977 Msa0651620:three_prime_UTR 55.0%
CCATAGCTCCGCCATTAGGA+AGG + chr4_3:59087969-59087988 None:intergenic 55.0%
! CCTTCCTAATGGCGGAGCTA+TGG - chr4_3:59087966-59087985 Msa0651620:three_prime_UTR 55.0%
GTGGACCCGAAGCTGTGAAA+AGG - chr4_3:59088040-59088059 Msa0651620:three_prime_UTR 55.0%
GAAGAGCCTTTGCCTTCTGG+TGG - chr4_3:59089146-59089165 Msa0651620:intron 55.0%
AGAGCCTTTGCCTTCTGGTG+GGG - chr4_3:59089148-59089167 Msa0651620:intron 55.0%
ACAACCCCACCAGAAGGCAA+AGG + chr4_3:59089155-59089174 None:intergenic 55.0%
CTTCTGGTGGGGTTGTGACT+GGG - chr4_3:59089159-59089178 Msa0651620:intron 55.0%
TGGTGCTTTCCTTCCCAAGC+AGG - chr4_3:59089337-59089356 Msa0651620:three_prime_UTR 55.0%
AGACATCAGCCTGCTTGGGA+AGG + chr4_3:59089349-59089368 None:intergenic 55.0%
CGGAAAGACATCAGCCTGCT+TGG + chr4_3:59089354-59089373 None:intergenic 55.0%
TGGAGAAGAAGTCTCTGCGG+AGG - chr4_3:59089735-59089754 Msa0651620:CDS 55.0%
! GTAGGTGGGCTCAAAATCCG+AGG - chr4_3:59090914-59090933 Msa0651620:intron 55.0%
! GTTGGTGGAAGCTTTGGTGC+TGG - chr4_3:59091234-59091253 Msa0651620:intron 55.0%
!! ATCTGTGATGGGTGGTGCTC+AGG - chr4_3:59091323-59091342 Msa0651620:intron 55.0%
GAGAGGTGGGAGAGGTTGAA+TGG - chr4_3:59091864-59091883 Msa0651620:five_prime_UTR 55.0%
TGGGTCATGAGGGGAGCTCA+GGG + chr4_3:59088805-59088824 None:intergenic 60.0%
TTGGGTCATGAGGGGAGCTC+AGG + chr4_3:59088806-59088825 None:intergenic 60.0%
CCAGTCACAACCCCACCAGA+AGG + chr4_3:59089161-59089180 None:intergenic 60.0%
CCTTCTGGTGGGGTTGTGAC+TGG - chr4_3:59089158-59089177 Msa0651620:intron 60.0%
GGTGGGGTTGTGACTGGGAT+CGG - chr4_3:59089164-59089183 Msa0651620:intron 60.0%
ACTGGGATCGGTCCAGTGCA+TGG - chr4_3:59089176-59089195 Msa0651620:three_prime_UTR 60.0%
GTGGTAGGCTCTTGCACTGC+TGG - chr4_3:59089449-59089468 Msa0651620:three_prime_UTR 60.0%
GTAGGCTCTTGCACTGCTGG+CGG - chr4_3:59089452-59089471 Msa0651620:three_prime_UTR 60.0%
AGCAGGGCCCCCTCTTGTTA+AGG - chr4_3:59089538-59089557 Msa0651620:CDS 60.0%
GTCTCTGCGGAGGATTTGGG+AGG - chr4_3:59089745-59089764 Msa0651620:CDS 60.0%
!!! GTTTTGGGGCAGTGACGGTG+AGG - chr4_3:59091069-59091088 Msa0651620:intron 60.0%
!! ACGGCGAGGCTTTGGGATGA+TGG - chr4_3:59091660-59091679 Msa0651620:CDS 60.0%
CATGGGAAGAGAGGTGGGAG+AGG - chr4_3:59091856-59091875 Msa0651620:five_prime_UTR 60.0%
GGGTCATGAGGGGAGCTCAG+GGG + chr4_3:59088804-59088823 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 59087738 59091987 59087738 ID=Msa0651620;Name=Msa0651620
chr4_3 mRNA 59087738 59091987 59087738 ID=Msa0651620-mRNA-1;Parent=Msa0651620;Name=Msa0651620-mRNA-1;_AED=0.19;_eAED=0.19;_QI=151|1|1|1|1|0.87|8|1024|353
chr4_3 exon 59087738 59088143 59087738 ID=Msa0651620-mRNA-1:exon:15797;Parent=Msa0651620-mRNA-1
chr4_3 exon 59088240 59088296 59088240 ID=Msa0651620-mRNA-1:exon:15796;Parent=Msa0651620-mRNA-1
chr4_3 exon 59088381 59088512 59088381 ID=Msa0651620-mRNA-1:exon:15795;Parent=Msa0651620-mRNA-1
chr4_3 exon 59088733 59088807 59088733 ID=Msa0651620-mRNA-1:exon:15794;Parent=Msa0651620-mRNA-1
chr4_3 exon 59089174 59089805 59089174 ID=Msa0651620-mRNA-1:exon:15793;Parent=Msa0651620-mRNA-1
chr4_3 exon 59089908 59089998 59089908 ID=Msa0651620-mRNA-1:exon:15792;Parent=Msa0651620-mRNA-1
chr4_3 exon 59090166 59090600 59090166 ID=Msa0651620-mRNA-1:exon:15791;Parent=Msa0651620-mRNA-1
chr4_3 exon 59091579 59091987 59091579 ID=Msa0651620-mRNA-1:exon:15790;Parent=Msa0651620-mRNA-1
chr4_3 five_prime_UTR 59091837 59091987 59091837 ID=Msa0651620-mRNA-1:five_prime_utr;Parent=Msa0651620-mRNA-1
chr4_3 CDS 59091579 59091836 59091579 ID=Msa0651620-mRNA-1:cds;Parent=Msa0651620-mRNA-1
chr4_3 CDS 59090166 59090600 59090166 ID=Msa0651620-mRNA-1:cds;Parent=Msa0651620-mRNA-1
chr4_3 CDS 59089908 59089998 59089908 ID=Msa0651620-mRNA-1:cds;Parent=Msa0651620-mRNA-1
chr4_3 CDS 59089528 59089805 59089528 ID=Msa0651620-mRNA-1:cds;Parent=Msa0651620-mRNA-1
chr4_3 three_prime_UTR 59089174 59089527 59089174 ID=Msa0651620-mRNA-1:three_prime_utr;Parent=Msa0651620-mRNA-1
chr4_3 three_prime_UTR 59088733 59088807 59088733 ID=Msa0651620-mRNA-1:three_prime_utr;Parent=Msa0651620-mRNA-1
chr4_3 three_prime_UTR 59088381 59088512 59088381 ID=Msa0651620-mRNA-1:three_prime_utr;Parent=Msa0651620-mRNA-1
chr4_3 three_prime_UTR 59088240 59088296 59088240 ID=Msa0651620-mRNA-1:three_prime_utr;Parent=Msa0651620-mRNA-1
chr4_3 three_prime_UTR 59087738 59088143 59087738 ID=Msa0651620-mRNA-1:three_prime_utr;Parent=Msa0651620-mRNA-1
Gene Sequence

>Msa0651620

ATGTTTAAACTAATTGGAAGAAAATCAAGTTGGGTACCCTCCAATTTACTGTTAAGAAGAGAATTGTGTTTGGGTGCCCTTCCTAATGGCGGAGCTATGGAACACTTGATCACTCAACTCCAATCTCATGTTCATAAGGTTCTTGCTGGTGGTGGACCCGAAGCTGTGAAAAGGAATAGTAGTAGAAATAAGCTTTTACCAAGAGAAAGAATTGATCGTCTACTTGATCCTGGTTCTTCTTTCCTTGAGCTTTCACAGCTTGCAGAACACGAGTTGTATGAAGAGCCTTTGCCTTCTGGTGGGGTTGTGACTGGGATCGGTCCAGTGCATGGCCGACTTTGTATGTTTGTGGCAAATGACCCTACTGTTAAAGGGGGGACTTATTATCCTATTACAGTTAAGAAACATCTCAGAGCACAGGAGATTGCGGCTCAATGCAAATTGCCGTGTGTGTATCTTGTTGACAGTGGTGGTGCTTTCCTTCCCAAGCAGGCTGATGTCTTTCCGGATAAGGAAAATTTTGGTAGAATATTCTATAACCAGGCTATAATGTCTGCTCAAGGGATTCCCCAAATTGCATTGGTGGTAGGCTCTTGCACTGCTGGCGGTGCCTATATACCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACTATTTTTTTAGCAGGGCCCCCTCTTGTTAAGGCTGCTACTGGAGAAGAAGTCTCTGCGGAGGATTTGGGAGGTGCTGCAGTACACTGCAAGACTTCGGGTGTTTCAGACTATTTTGCTCAAGATGAATTTCATGCTCTTGCACTTGGGAGGGACATCGTCAAGAATTTGCATATGGCTGGGAGAGATGTCTCGACAAATGGATTGCAAAATACAAGTTATGAGTATAAGGAGCCACTATATGATGTCAATGAACTTCGTTCTATTGCCCCTACCGATCTTAAGCAGCAGTTTGATATCCGAGAAGTGATTTCTCGCATTGTTGACGGAAGTGAATTTGATGAATTCAAGAAACTGTATGGCACTGTGAGGGCTTATTCACTTCACTTTCTACCGTTTTAA
Protein sequence

>Msa0651620

MFKLIGRKSSWVPSNLLLRRELCLGALPNGGAMEHLITQLQSHVHKVLAGGGPEAVKRNSSRNKLLPRERIDRLLDPGSSFLELSQLAEHELYEEPLPSGGVVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCKLPCVYLVDSGGAFLPKQADVFPDKENFGRIFYNQAIMSAQGIPQIALVVGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGAAVHCKTSGVSDYFAQDEFHALALGRDIVKNLHMAGRDVSTNGLQNTSYEYKEPLYDVNELRSIAPTDLKQQFDIREVISRIVDGSEFDEFKKLYGTVRAYSLHFLPF*