Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0029400 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029400 | Msa0124890 | 0.900874 | 4.729745e-78 | -8.615850e-47 |
| Msa0029400 | Msa0169430 | 0.985157 | 1.061753e-162 | -8.615850e-47 |
| Msa0029400 | Msa1002410 | 0.905757 | 3.063879e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029400 | MtrunA17_Chr1g0186171 | 99.518 | 415 | 1 | 1 | 1 | 415 | 1 | 414 | 0.0 | 842 |
| Msa0029400 | MtrunA17_Chr1g0168401 | 62.818 | 433 | 125 | 12 | 1 | 415 | 1 | 415 | 2.74e-152 | 437 |
| Msa0029400 | MtrunA17_Chr8g0387241 | 35.545 | 211 | 104 | 7 | 209 | 409 | 133 | 321 | 1.07e-23 | 100 |
| Msa0029400 | MtrunA17_Chr2g0311591 | 54.545 | 77 | 35 | 0 | 298 | 374 | 151 | 227 | 2.69e-21 | 92.8 |
| Msa0029400 | MtrunA17_Chr5g0397361 | 56.944 | 72 | 31 | 0 | 289 | 360 | 145 | 216 | 6.13e-20 | 88.6 |
| Msa0029400 | MtrunA17_Chr2g0327621 | 45.918 | 98 | 51 | 1 | 265 | 362 | 105 | 200 | 2.14e-19 | 87.0 |
| Msa0029400 | MtrunA17_Chr4g0030421 | 57.377 | 61 | 26 | 0 | 302 | 362 | 20 | 80 | 2.91e-18 | 80.9 |
| Msa0029400 | MtrunA17_Chr1g0147111 | 36.296 | 135 | 69 | 4 | 229 | 362 | 159 | 277 | 1.25e-16 | 79.7 |
| Msa0029400 | MtrunA17_Chr3g0126721 | 65.306 | 49 | 17 | 0 | 313 | 361 | 226 | 274 | 5.70e-15 | 74.7 |
| Msa0029400 | MtrunA17_Chr3g0136701 | 42.308 | 78 | 39 | 1 | 288 | 365 | 209 | 280 | 3.10e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029400 | AT1G04500.3 | 51.069 | 421 | 147 | 15 | 9 | 415 | 2 | 377 | 1.44e-118 | 350 |
| Msa0029400 | AT1G04500.4 | 51.069 | 421 | 147 | 15 | 9 | 415 | 11 | 386 | 6.27e-118 | 349 |
| Msa0029400 | AT1G04500.1 | 51.069 | 421 | 147 | 15 | 9 | 415 | 11 | 386 | 6.27e-118 | 349 |
| Msa0029400 | AT2G33350.2 | 49.531 | 426 | 159 | 16 | 13 | 415 | 17 | 409 | 1.34e-101 | 308 |
| Msa0029400 | AT2G33350.4 | 49.531 | 426 | 159 | 16 | 13 | 415 | 6 | 398 | 2.01e-101 | 307 |
| Msa0029400 | AT2G33350.5 | 49.531 | 426 | 159 | 16 | 13 | 415 | 26 | 418 | 5.23e-101 | 307 |
| Msa0029400 | AT2G33350.1 | 48.946 | 427 | 161 | 16 | 13 | 415 | 17 | 410 | 7.42e-100 | 303 |
| Msa0029400 | AT1G04500.2 | 45.376 | 346 | 126 | 16 | 9 | 338 | 11 | 309 | 8.39e-70 | 225 |
| Msa0029400 | AT2G33350.3 | 43.678 | 348 | 141 | 15 | 13 | 338 | 17 | 331 | 9.61e-60 | 198 |
| Msa0029400 | AT5G41380.1 | 56.250 | 96 | 33 | 3 | 266 | 361 | 173 | 259 | 1.11e-23 | 100 |
| Msa0029400 | AT1G63820.1 | 40.833 | 120 | 69 | 1 | 264 | 381 | 137 | 256 | 2.44e-23 | 99.8 |
| Msa0029400 | AT3G12890.1 | 52.809 | 89 | 36 | 1 | 308 | 396 | 130 | 212 | 4.21e-22 | 95.1 |
| Msa0029400 | AT4G27900.1 | 38.144 | 97 | 45 | 2 | 266 | 362 | 178 | 259 | 4.92e-16 | 78.2 |
| Msa0029400 | AT4G27900.2 | 38.144 | 97 | 45 | 2 | 266 | 362 | 178 | 259 | 4.92e-16 | 78.2 |
| Msa0029400 | AT5G53420.2 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.12e-15 | 73.9 |
| Msa0029400 | AT5G53420.5 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.12e-15 | 73.9 |
| Msa0029400 | AT5G53420.4 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.12e-15 | 73.9 |
| Msa0029400 | AT5G59990.1 | 39.850 | 133 | 63 | 3 | 265 | 397 | 120 | 235 | 3.41e-15 | 75.1 |
| Msa0029400 | AT5G53420.1 | 65.957 | 47 | 16 | 0 | 315 | 361 | 216 | 262 | 6.67e-15 | 74.7 |
| Msa0029400 | AT5G24930.1 | 40.000 | 70 | 42 | 0 | 297 | 366 | 275 | 344 | 9.97e-11 | 63.5 |
Find 78 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCCAAGTTTGAGATTTC+TGG | 0.139924 | 1_1:-54746431 | None:intergenic |
| TGATTCAGTTGCACCTCTTA+TGG | 0.196419 | 1_1:+54745263 | Msa0029400:CDS |
| TTTGCAAAGAATGATGATTT+TGG | 0.203362 | 1_1:+54746778 | Msa0029400:CDS |
| TCAGAATTCTGCAAAGCTTC+TGG | 0.225403 | 1_1:-54744853 | None:intergenic |
| TCCTGTAAACATTGATATAA+AGG | 0.285030 | 1_1:-54744772 | None:intergenic |
| GTTTAACCCTCCTGACCTTC+AGG | 0.295741 | 1_1:+54745563 | Msa0029400:CDS |
| TCTCCTTCTTGCAATTATCT+TGG | 0.304557 | 1_1:+54745366 | Msa0029400:CDS |
| TGATAGATTATTGCTATTGT+TGG | 0.307253 | 1_1:-54745028 | None:intergenic |
| TGGTTTGTTTGGTGGAAATA+TGG | 0.310217 | 1_1:+54745455 | Msa0029400:CDS |
| TCCTTTATATCAATGTTTAC+AGG | 0.317206 | 1_1:+54744771 | Msa0029400:CDS |
| TCGAAAATTCGAGCGCTAAG+AGG | 0.329398 | 1_1:-54744808 | None:intergenic |
| ACTGATAGTTCTGGTTTGTT+TGG | 0.336862 | 1_1:+54745444 | Msa0029400:CDS |
| TAATATATTTGTTGCATATG+AGG | 0.345362 | 1_1:-54744914 | None:intergenic |
| GATTCAGTTGCACCTCTTAT+GGG | 0.348322 | 1_1:+54745264 | Msa0029400:CDS |
| GCTTTGTCTACTGATAGTTC+TGG | 0.348575 | 1_1:+54745435 | Msa0029400:CDS |
| AAACTTCAGCAAGAAAATTA+AGG | 0.349765 | 1_1:+54746535 | Msa0029400:CDS |
| CTTGGAAGACTCCACTTTCA+AGG | 0.364962 | 1_1:+54746445 | Msa0029400:CDS |
| AAAACAGGTGGTAATGATAA+AGG | 0.370742 | 1_1:-54745291 | None:intergenic |
| CTTGATTATCAAGGAGATAA+TGG | 0.371169 | 1_1:+54745507 | Msa0029400:CDS |
| AGAGGTGCAACTGAATCATT+TGG | 0.378768 | 1_1:-54745258 | None:intergenic |
| GTTGATATTGTTGTTTGTGC+TGG | 0.381949 | 1_1:-54744995 | None:intergenic |
| GCTACTAGTTGTTGATTCTC+AGG | 0.396916 | 1_1:-54746380 | None:intergenic |
| CAGAATTCTGCAAAGCTTCT+GGG | 0.401559 | 1_1:-54744852 | None:intergenic |
| GGGTTAAACACCCTCTGAAT+AGG | 0.414662 | 1_1:-54745549 | None:intergenic |
| AATGGAATAGTTGCATTTGA+AGG | 0.424110 | 1_1:-54747144 | None:intergenic |
| TGCAATTATCTTGGTCCTGC+CGG | 0.431147 | 1_1:+54745375 | Msa0029400:CDS |
| GCAACTATTCCATTCAATCA+TGG | 0.437657 | 1_1:+54747153 | Msa0029400:CDS |
| GATAGTTCTGGTTTGTTTGG+TGG | 0.449481 | 1_1:+54745447 | Msa0029400:CDS |
| TAATTGCAAGAAGGAGAAGA+AGG | 0.453970 | 1_1:-54745360 | None:intergenic |
| ATATTGTTGTTTGTGCTGGT+TGG | 0.455798 | 1_1:-54744991 | None:intergenic |
| ACAGCATGTTCATCCGTTGA+TGG | 0.462537 | 1_1:+54745216 | Msa0029400:CDS |
| TTATCTTGGTCCTGCCGGTA+TGG | 0.463392 | 1_1:+54745380 | Msa0029400:CDS |
| TGTGAAAGAGGAAGATGATA+TGG | 0.463481 | 1_1:+54747079 | Msa0029400:CDS |
| GACACCAGAAATCTCAAACT+TGG | 0.464943 | 1_1:+54746427 | Msa0029400:CDS |
| CGAAAATTCGAGCGCTAAGA+GGG | 0.464964 | 1_1:-54744807 | None:intergenic |
| TGAAGAAGAAGATGAAGAAG+AGG | 0.466581 | 1_1:+54746831 | Msa0029400:CDS |
| GAAGACTCCACTTTCAAGGT+TGG | 0.473074 | 1_1:+54746449 | Msa0029400:CDS |
| ACAGTCAATACCTGAAGGTC+AGG | 0.480367 | 1_1:-54745573 | None:intergenic |
| GATAGCAGACCTCGAGTTAG+AGG | 0.482620 | 1_1:+54746751 | Msa0029400:CDS |
| GAATCAAATCCATGATTGAA+TGG | 0.483820 | 1_1:-54747162 | None:intergenic |
| CAGCATGTTCATCCGTTGAT+GGG | 0.484565 | 1_1:+54745217 | Msa0029400:CDS |
| GCAGTAGTAAGAGAACCATT+AGG | 0.493364 | 1_1:-54745414 | None:intergenic |
| ATGGCGGCATACATGCCTAA+TGG | 0.504835 | 1_1:+54745399 | Msa0029400:CDS |
| GTATGCATGCCGCAAAACTC+TGG | 0.507026 | 1_1:+54746726 | Msa0029400:intron |
| GATAAAGGAGCTCCCATAAG+AGG | 0.508957 | 1_1:-54745276 | None:intergenic |
| TTGTCCTGATCCTATTCAGA+GGG | 0.518686 | 1_1:+54745539 | Msa0029400:CDS |
| AACACCCTCTGAATAGGATC+AGG | 0.520235 | 1_1:-54745543 | None:intergenic |
| AATGAAGGAACATTGAAAGA+TGG | 0.520786 | 1_1:-54745117 | None:intergenic |
| ATGTATGCCGCCATACCGGC+AGG | 0.531779 | 1_1:-54745390 | None:intergenic |
| ACTACAGGTAGTTGTGAAAG+AGG | 0.540728 | 1_1:+54747067 | Msa0029400:intron |
| GAGAATCAACAACTAGTAGC+TGG | 0.540899 | 1_1:+54746383 | Msa0029400:CDS |
| ACACAAGAACTTGATTATCA+AGG | 0.541577 | 1_1:+54745498 | Msa0029400:CDS |
| GAAGGAGAAGAAGGGTTCAA+AGG | 0.541723 | 1_1:-54745351 | None:intergenic |
| GAAAACTTTCTGTTGAACAA+AGG | 0.552214 | 1_1:+54746471 | Msa0029400:CDS |
| GGGTTCAAAGGAACATAAGA+AGG | 0.558201 | 1_1:-54745339 | None:intergenic |
| GATATATTTGCTCATATCAG+TGG | 0.567084 | 1_1:+54747113 | Msa0029400:CDS |
| AGGCATGTATGCCGCCATAC+CGG | 0.574531 | 1_1:-54745394 | None:intergenic |
| TCTAACTCGAGGTCTGCTAT+CGG | 0.575030 | 1_1:-54746749 | None:intergenic |
| CAACAACTAGTAGCTGGTGC+TGG | 0.575480 | 1_1:+54746389 | Msa0029400:CDS |
| GATGTGACTGGAAGGAATGA+AGG | 0.578846 | 1_1:-54745132 | None:intergenic |
| AATTGCAAGAAGGAGAAGAA+GGG | 0.582488 | 1_1:-54745359 | None:intergenic |
| ACTTGCTGTGATGATGTGAC+TGG | 0.583948 | 1_1:-54745144 | None:intergenic |
| TCTTGGTCCTGCCGGTATGG+CGG | 0.591145 | 1_1:+54745383 | Msa0029400:CDS |
| AGAAGCTTTGCAGAATTCTG+AGG | 0.591368 | 1_1:+54744855 | Msa0029400:CDS |
| GTCAATACCTGAAGGTCAGG+AGG | 0.601952 | 1_1:-54745570 | None:intergenic |
| ATTGTCCTGATCCTATTCAG+AGG | 0.615011 | 1_1:+54745538 | Msa0029400:CDS |
| TGATAGTGAGAAATCTATTG+AGG | 0.622836 | 1_1:-54745094 | None:intergenic |
| GGACCAAGATAATTGCAAGA+AGG | 0.631874 | 1_1:-54745369 | None:intergenic |
| GCAAATCGTCCTCTAACTCG+AGG | 0.634840 | 1_1:-54746760 | None:intergenic |
| GATATGAGCAAATATATCTG+AGG | 0.650959 | 1_1:-54747108 | None:intergenic |
| TCAATACCTGAAGGTCAGGA+GGG | 0.652626 | 1_1:-54745569 | None:intergenic |
| GATACTAATAGAACTGCTAG+TGG | 0.652698 | 1_1:+54746802 | Msa0029400:CDS |
| GCTGTGATGATGTGACTGGA+AGG | 0.653513 | 1_1:-54745140 | None:intergenic |
| GTAAGTTGAACATGATGATG+AGG | 0.662251 | 1_1:-54745195 | None:intergenic |
| ATACTGCGAAAACCCATCAA+CGG | 0.666515 | 1_1:-54745229 | None:intergenic |
| TGAGATTTCTGGTGTCAGAG+TGG | 0.672060 | 1_1:-54746420 | None:intergenic |
| TAAAGGAAATGTAAACAACA+TGG | 0.694278 | 1_1:-54744755 | None:intergenic |
| TAGCAATAGCAATAACACAG+TGG | 0.772848 | 1_1:+54744960 | Msa0029400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTACTTTTTCATT+TGG | + | chr1_1:54745913-54745932 | Msa0029400:intron | 10.0% |
| !!! | ATATTTTTTACTTTTTCATT+TGG | + | chr1_1:54745913-54745932 | Msa0029400:intron | 10.0% |
| !! | TAAAAAATAACTATGGAAAA+TGG | - | chr1_1:54745667-54745686 | None:intergenic | 15.0% |
| !! | TCATTCATAAAAAATAACTA+TGG | - | chr1_1:54745674-54745693 | None:intergenic | 15.0% |
| !! | AAAATAAATGTTTCGAAAAT+CGG | - | chr1_1:54746020-54746039 | None:intergenic | 15.0% |
| !!! | ATAATGCTAATTTATTTTTC+AGG | + | chr1_1:54746349-54746368 | Msa0029400:intron | 15.0% |
| !! | TTACAAGTTTATATTTAACT+TGG | + | chr1_1:54746906-54746925 | Msa0029400:intron | 15.0% |
| !! | TATCTACTTATTTATTTGAT+TGG | + | chr1_1:54747009-54747028 | Msa0029400:intron | 15.0% |
| !! | TAAAAAATAACTATGGAAAA+TGG | - | chr1_1:54745667-54745686 | None:intergenic | 15.0% |
| !! | TCATTCATAAAAAATAACTA+TGG | - | chr1_1:54745674-54745693 | None:intergenic | 15.0% |
| !! | AAAATAAATGTTTCGAAAAT+CGG | - | chr1_1:54746020-54746039 | None:intergenic | 15.0% |
| !!! | ATAATGCTAATTTATTTTTC+AGG | + | chr1_1:54746349-54746368 | Msa0029400:intron | 15.0% |
| !! | TTACAAGTTTATATTTAACT+TGG | + | chr1_1:54746906-54746925 | Msa0029400:intron | 15.0% |
| !! | TATCTACTTATTTATTTGAT+TGG | + | chr1_1:54747009-54747028 | Msa0029400:intron | 15.0% |
| !!! | TAATATATTTGTTGCATATG+AGG | - | chr1_1:54744917-54744936 | None:intergenic | 20.0% |
| !! | AATATACAAAAAATGAGAAC+AGG | - | chr1_1:54745898-54745917 | None:intergenic | 20.0% |
| !!! | TTATTTTAAAGCTTTGTAAG+AGG | + | chr1_1:54746033-54746052 | Msa0029400:intron | 20.0% |
| !!! | TATGCTACTTTTTTTTTTGT+AGG | - | chr1_1:54746191-54746210 | None:intergenic | 20.0% |
| !! | AAAAAAGTAGCATAGTATAT+TGG | + | chr1_1:54746197-54746216 | Msa0029400:intron | 20.0% |
| !!! | CTTTTTTCCAATAAAATTGA+TGG | + | chr1_1:54746243-54746262 | Msa0029400:intron | 20.0% |
| !!! | TGTTTTACCATCAATTTTAT+TGG | - | chr1_1:54746253-54746272 | None:intergenic | 20.0% |
| !!! | TAATATATTTGTTGCATATG+AGG | - | chr1_1:54744917-54744936 | None:intergenic | 20.0% |
| !! | AATATACAAAAAATGAGAAC+AGG | - | chr1_1:54745898-54745917 | None:intergenic | 20.0% |
| !!! | TTATTTTAAAGCTTTGTAAG+AGG | + | chr1_1:54746033-54746052 | Msa0029400:intron | 20.0% |
| !!! | TATGCTACTTTTTTTTTTGT+AGG | - | chr1_1:54746191-54746210 | None:intergenic | 20.0% |
| !! | AAAAAAGTAGCATAGTATAT+TGG | + | chr1_1:54746197-54746216 | Msa0029400:intron | 20.0% |
| !!! | CTTTTTTCCAATAAAATTGA+TGG | + | chr1_1:54746243-54746262 | Msa0029400:intron | 20.0% |
| !!! | TGTTTTACCATCAATTTTAT+TGG | - | chr1_1:54746253-54746272 | None:intergenic | 20.0% |
| ! | TCCTTTATATCAATGTTTAC+AGG | + | chr1_1:54744771-54744790 | Msa0029400:CDS | 25.0% |
| ! | TCCTGTAAACATTGATATAA+AGG | - | chr1_1:54744775-54744794 | None:intergenic | 25.0% |
| !! | TGATAGATTATTGCTATTGT+TGG | - | chr1_1:54745031-54745050 | None:intergenic | 25.0% |
| ! | AAGATTAACAACCTTATAGT+TGG | - | chr1_1:54745732-54745751 | None:intergenic | 25.0% |
| ! | TTAGTCATCCAATTCAATTA+TGG | + | chr1_1:54745939-54745958 | Msa0029400:intron | 25.0% |
| ! | AGTTCAAACCATAATTGAAT+TGG | - | chr1_1:54745950-54745969 | None:intergenic | 25.0% |
| !! | AGGTAATTTCTTTTTGCAAA+AGG | + | chr1_1:54746053-54746072 | Msa0029400:intron | 25.0% |
| ! | ATAAACTGTTTACATATCTG+TGG | - | chr1_1:54746089-54746108 | None:intergenic | 25.0% |
| ! | ATATTGGCATATATTCTATG+AGG | - | chr1_1:54746113-54746132 | None:intergenic | 25.0% |
| ! | AATGTCCTATTTCATATGAA+TGG | + | chr1_1:54746284-54746303 | Msa0029400:intron | 25.0% |
| ! | AAGAACCATTCATATGAAAT+AGG | - | chr1_1:54746292-54746311 | None:intergenic | 25.0% |
| ! | AAACTTCAGCAAGAAAATTA+AGG | + | chr1_1:54746535-54746554 | Msa0029400:CDS | 25.0% |
| ! | AAGTAACATGATAACTGATA+AGG | - | chr1_1:54746610-54746629 | None:intergenic | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr1_1:54746778-54746797 | Msa0029400:CDS | 25.0% |
| ! | TATAAACTTGTAAAGTGTGT+CGG | - | chr1_1:54746899-54746918 | None:intergenic | 25.0% |
| ! | TCCTTTATATCAATGTTTAC+AGG | + | chr1_1:54744771-54744790 | Msa0029400:CDS | 25.0% |
| ! | TCCTGTAAACATTGATATAA+AGG | - | chr1_1:54744775-54744794 | None:intergenic | 25.0% |
| !! | TGATAGATTATTGCTATTGT+TGG | - | chr1_1:54745031-54745050 | None:intergenic | 25.0% |
| ! | AAGATTAACAACCTTATAGT+TGG | - | chr1_1:54745732-54745751 | None:intergenic | 25.0% |
| ! | TTAGTCATCCAATTCAATTA+TGG | + | chr1_1:54745939-54745958 | Msa0029400:intron | 25.0% |
| ! | AGTTCAAACCATAATTGAAT+TGG | - | chr1_1:54745950-54745969 | None:intergenic | 25.0% |
| !! | AGGTAATTTCTTTTTGCAAA+AGG | + | chr1_1:54746053-54746072 | Msa0029400:intron | 25.0% |
| ! | ATAAACTGTTTACATATCTG+TGG | - | chr1_1:54746089-54746108 | None:intergenic | 25.0% |
| ! | ATATTGGCATATATTCTATG+AGG | - | chr1_1:54746113-54746132 | None:intergenic | 25.0% |
| ! | AATGTCCTATTTCATATGAA+TGG | + | chr1_1:54746284-54746303 | Msa0029400:intron | 25.0% |
| ! | AAGAACCATTCATATGAAAT+AGG | - | chr1_1:54746292-54746311 | None:intergenic | 25.0% |
| ! | AAACTTCAGCAAGAAAATTA+AGG | + | chr1_1:54746535-54746554 | Msa0029400:CDS | 25.0% |
| ! | AAGTAACATGATAACTGATA+AGG | - | chr1_1:54746610-54746629 | None:intergenic | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr1_1:54746778-54746797 | Msa0029400:CDS | 25.0% |
| ! | TATAAACTTGTAAAGTGTGT+CGG | - | chr1_1:54746899-54746918 | None:intergenic | 25.0% |
| ! | TGATAGTGAGAAATCTATTG+AGG | - | chr1_1:54745097-54745116 | None:intergenic | 30.0% |
| AATGAAGGAACATTGAAAGA+TGG | - | chr1_1:54745120-54745139 | None:intergenic | 30.0% | |
| ! | AAAACAGGTGGTAATGATAA+AGG | - | chr1_1:54745294-54745313 | None:intergenic | 30.0% |
| ! | TTTGGTGGAAATATGGTTTT+TGG | + | chr1_1:54745462-54745481 | Msa0029400:CDS | 30.0% |
| ACACAAGAACTTGATTATCA+AGG | + | chr1_1:54745498-54745517 | Msa0029400:CDS | 30.0% | |
| CTTGATTATCAAGGAGATAA+TGG | + | chr1_1:54745507-54745526 | Msa0029400:CDS | 30.0% | |
| ! | GTCTAAAGTTTCCAACTATA+AGG | + | chr1_1:54745718-54745737 | Msa0029400:intron | 30.0% |
| !!! | CAAGCGATGTTTTTTAAAAC+TGG | + | chr1_1:54745760-54745779 | Msa0029400:intron | 30.0% |
| TACAAAAAATGAGAACAGGT+TGG | - | chr1_1:54745894-54745913 | None:intergenic | 30.0% | |
| ACTTTAGGTCATTGTTCAAT+TGG | - | chr1_1:54745980-54745999 | None:intergenic | 30.0% | |
| AAATGTTTCGAAAATCGGAT+TGG | - | chr1_1:54746015-54746034 | None:intergenic | 30.0% | |
| ! | TTTCTTTTTGCAAAAGGTCA+TGG | + | chr1_1:54746059-54746078 | Msa0029400:intron | 30.0% |
| TTATCTTCAGATTCAGATTC+TGG | - | chr1_1:54746330-54746349 | None:intergenic | 30.0% | |
| GAAAACTTTCTGTTGAACAA+AGG | + | chr1_1:54746471-54746490 | Msa0029400:CDS | 30.0% | |
| ! | CATTTGATAACTGTAACTAC+AGG | + | chr1_1:54747052-54747071 | Msa0029400:intron | 30.0% |
| GATATGAGCAAATATATCTG+AGG | - | chr1_1:54747111-54747130 | None:intergenic | 30.0% | |
| GATATATTTGCTCATATCAG+TGG | + | chr1_1:54747113-54747132 | Msa0029400:CDS | 30.0% | |
| AATGGAATAGTTGCATTTGA+AGG | - | chr1_1:54747147-54747166 | None:intergenic | 30.0% | |
| ! | TGATAGTGAGAAATCTATTG+AGG | - | chr1_1:54745097-54745116 | None:intergenic | 30.0% |
| AATGAAGGAACATTGAAAGA+TGG | - | chr1_1:54745120-54745139 | None:intergenic | 30.0% | |
| ! | AAAACAGGTGGTAATGATAA+AGG | - | chr1_1:54745294-54745313 | None:intergenic | 30.0% |
| ! | TTTGGTGGAAATATGGTTTT+TGG | + | chr1_1:54745462-54745481 | Msa0029400:CDS | 30.0% |
| ACACAAGAACTTGATTATCA+AGG | + | chr1_1:54745498-54745517 | Msa0029400:CDS | 30.0% | |
| CTTGATTATCAAGGAGATAA+TGG | + | chr1_1:54745507-54745526 | Msa0029400:CDS | 30.0% | |
| ! | GTCTAAAGTTTCCAACTATA+AGG | + | chr1_1:54745718-54745737 | Msa0029400:intron | 30.0% |
| !!! | CAAGCGATGTTTTTTAAAAC+TGG | + | chr1_1:54745760-54745779 | Msa0029400:intron | 30.0% |
| TACAAAAAATGAGAACAGGT+TGG | - | chr1_1:54745894-54745913 | None:intergenic | 30.0% | |
| ACTTTAGGTCATTGTTCAAT+TGG | - | chr1_1:54745980-54745999 | None:intergenic | 30.0% | |
| AAATGTTTCGAAAATCGGAT+TGG | - | chr1_1:54746015-54746034 | None:intergenic | 30.0% | |
| ! | TTTCTTTTTGCAAAAGGTCA+TGG | + | chr1_1:54746059-54746078 | Msa0029400:intron | 30.0% |
| TTATCTTCAGATTCAGATTC+TGG | - | chr1_1:54746330-54746349 | None:intergenic | 30.0% | |
| GAAAACTTTCTGTTGAACAA+AGG | + | chr1_1:54746471-54746490 | Msa0029400:CDS | 30.0% | |
| ! | CATTTGATAACTGTAACTAC+AGG | + | chr1_1:54747052-54747071 | Msa0029400:intron | 30.0% |
| GATATGAGCAAATATATCTG+AGG | - | chr1_1:54747111-54747130 | None:intergenic | 30.0% | |
| GATATATTTGCTCATATCAG+TGG | + | chr1_1:54747113-54747132 | Msa0029400:CDS | 30.0% | |
| AATGGAATAGTTGCATTTGA+AGG | - | chr1_1:54747147-54747166 | None:intergenic | 30.0% | |
| TAGCAATAGCAATAACACAG+TGG | + | chr1_1:54744960-54744979 | Msa0029400:CDS | 35.0% | |
| !! | ATATTGTTGTTTGTGCTGGT+TGG | - | chr1_1:54744994-54745013 | None:intergenic | 35.0% |
| !! | GTTGATATTGTTGTTTGTGC+TGG | - | chr1_1:54744998-54745017 | None:intergenic | 35.0% |
| ! | GTAAGTTGAACATGATGATG+AGG | - | chr1_1:54745198-54745217 | None:intergenic | 35.0% |
| !!! | ATTACCACCTGTTTTTGAAG+AGG | + | chr1_1:54745299-54745318 | Msa0029400:CDS | 35.0% |
| ATGCAATCCTCTTCAAAAAC+AGG | - | chr1_1:54745309-54745328 | None:intergenic | 35.0% | |
| AATTGCAAGAAGGAGAAGAA+GGG | - | chr1_1:54745362-54745381 | None:intergenic | 35.0% | |
| TAATTGCAAGAAGGAGAAGA+AGG | - | chr1_1:54745363-54745382 | None:intergenic | 35.0% | |
| TCTCCTTCTTGCAATTATCT+TGG | + | chr1_1:54745366-54745385 | Msa0029400:CDS | 35.0% | |
| !! | ACTGATAGTTCTGGTTTGTT+TGG | + | chr1_1:54745444-54745463 | Msa0029400:CDS | 35.0% |
| !! | TGGTTTGTTTGGTGGAAATA+TGG | + | chr1_1:54745455-54745474 | Msa0029400:CDS | 35.0% |
| TTGAAACAGTCAATACCTGA+AGG | - | chr1_1:54745581-54745600 | None:intergenic | 35.0% | |
| GATTGAACGTAATTGAGTCA+CGG | + | chr1_1:54745863-54745882 | Msa0029400:intron | 35.0% | |
| TGGAGATCTTGTGAAACTTT+AGG | - | chr1_1:54745995-54746014 | None:intergenic | 35.0% | |
| !!! | GCTACTGTTTTGATGGATAT+TGG | - | chr1_1:54746129-54746148 | None:intergenic | 35.0% |
| !! | ATTGCTAGCTACTGTTTTGA+TGG | - | chr1_1:54746136-54746155 | None:intergenic | 35.0% |
| GGTGAGACTGTGATTATAAA+GGG | - | chr1_1:54746170-54746189 | None:intergenic | 35.0% | |
| AGGTGAGACTGTGATTATAA+AGG | - | chr1_1:54746171-54746190 | None:intergenic | 35.0% | |
| ! | TCAGATTCAGATTCTGGAAA+GGG | - | chr1_1:54746324-54746343 | None:intergenic | 35.0% |
| ! | TTCAGATTCAGATTCTGGAA+AGG | - | chr1_1:54746325-54746344 | None:intergenic | 35.0% |
| ! | TCTTCCAAGTTTGAGATTTC+TGG | - | chr1_1:54746434-54746453 | None:intergenic | 35.0% |
| ! | AAGTTTTCCAACCTTGAAAG+TGG | - | chr1_1:54746459-54746478 | None:intergenic | 35.0% |
| CAGTTCTGTTTGATTATGCA+TGG | - | chr1_1:54746583-54746602 | None:intergenic | 35.0% | |
| ATATGCAGTAAGAAGAGAAG+TGG | - | chr1_1:54746668-54746687 | None:intergenic | 35.0% | |
| GATACTAATAGAACTGCTAG+TGG | + | chr1_1:54746802-54746821 | Msa0029400:CDS | 35.0% | |
| TGAAGAAGAAGATGAAGAAG+AGG | + | chr1_1:54746831-54746850 | Msa0029400:CDS | 35.0% | |
| TGTGAAAGAGGAAGATGATA+TGG | + | chr1_1:54747079-54747098 | Msa0029400:CDS | 35.0% | |
| GCAACTATTCCATTCAATCA+TGG | + | chr1_1:54747153-54747172 | Msa0029400:CDS | 35.0% | |
| TAGCAATAGCAATAACACAG+TGG | + | chr1_1:54744960-54744979 | Msa0029400:CDS | 35.0% | |
| !! | ATATTGTTGTTTGTGCTGGT+TGG | - | chr1_1:54744994-54745013 | None:intergenic | 35.0% |
| !! | GTTGATATTGTTGTTTGTGC+TGG | - | chr1_1:54744998-54745017 | None:intergenic | 35.0% |
| ! | GTAAGTTGAACATGATGATG+AGG | - | chr1_1:54745198-54745217 | None:intergenic | 35.0% |
| !!! | ATTACCACCTGTTTTTGAAG+AGG | + | chr1_1:54745299-54745318 | Msa0029400:CDS | 35.0% |
| ATGCAATCCTCTTCAAAAAC+AGG | - | chr1_1:54745309-54745328 | None:intergenic | 35.0% | |
| AATTGCAAGAAGGAGAAGAA+GGG | - | chr1_1:54745362-54745381 | None:intergenic | 35.0% | |
| TAATTGCAAGAAGGAGAAGA+AGG | - | chr1_1:54745363-54745382 | None:intergenic | 35.0% | |
| TCTCCTTCTTGCAATTATCT+TGG | + | chr1_1:54745366-54745385 | Msa0029400:CDS | 35.0% | |
| !! | ACTGATAGTTCTGGTTTGTT+TGG | + | chr1_1:54745444-54745463 | Msa0029400:CDS | 35.0% |
| !! | TGGTTTGTTTGGTGGAAATA+TGG | + | chr1_1:54745455-54745474 | Msa0029400:CDS | 35.0% |
| TTGAAACAGTCAATACCTGA+AGG | - | chr1_1:54745581-54745600 | None:intergenic | 35.0% | |
| GATTGAACGTAATTGAGTCA+CGG | + | chr1_1:54745863-54745882 | Msa0029400:intron | 35.0% | |
| TGGAGATCTTGTGAAACTTT+AGG | - | chr1_1:54745995-54746014 | None:intergenic | 35.0% | |
| !!! | GCTACTGTTTTGATGGATAT+TGG | - | chr1_1:54746129-54746148 | None:intergenic | 35.0% |
| !! | ATTGCTAGCTACTGTTTTGA+TGG | - | chr1_1:54746136-54746155 | None:intergenic | 35.0% |
| GGTGAGACTGTGATTATAAA+GGG | - | chr1_1:54746170-54746189 | None:intergenic | 35.0% | |
| AGGTGAGACTGTGATTATAA+AGG | - | chr1_1:54746171-54746190 | None:intergenic | 35.0% | |
| ! | TCAGATTCAGATTCTGGAAA+GGG | - | chr1_1:54746324-54746343 | None:intergenic | 35.0% |
| ! | TTCAGATTCAGATTCTGGAA+AGG | - | chr1_1:54746325-54746344 | None:intergenic | 35.0% |
| ! | TCTTCCAAGTTTGAGATTTC+TGG | - | chr1_1:54746434-54746453 | None:intergenic | 35.0% |
| ! | AAGTTTTCCAACCTTGAAAG+TGG | - | chr1_1:54746459-54746478 | None:intergenic | 35.0% |
| CAGTTCTGTTTGATTATGCA+TGG | - | chr1_1:54746583-54746602 | None:intergenic | 35.0% | |
| ATATGCAGTAAGAAGAGAAG+TGG | - | chr1_1:54746668-54746687 | None:intergenic | 35.0% | |
| GATACTAATAGAACTGCTAG+TGG | + | chr1_1:54746802-54746821 | Msa0029400:CDS | 35.0% | |
| TGAAGAAGAAGATGAAGAAG+AGG | + | chr1_1:54746831-54746850 | Msa0029400:CDS | 35.0% | |
| TGTGAAAGAGGAAGATGATA+TGG | + | chr1_1:54747079-54747098 | Msa0029400:CDS | 35.0% | |
| GCAACTATTCCATTCAATCA+TGG | + | chr1_1:54747153-54747172 | Msa0029400:CDS | 35.0% | |
| CAGAATTCTGCAAAGCTTCT+GGG | - | chr1_1:54744855-54744874 | None:intergenic | 40.0% | |
| TCAGAATTCTGCAAAGCTTC+TGG | - | chr1_1:54744856-54744875 | None:intergenic | 40.0% | |
| AGAAGCTTTGCAGAATTCTG+AGG | + | chr1_1:54744855-54744874 | Msa0029400:CDS | 40.0% | |
| ATACTGCGAAAACCCATCAA+CGG | - | chr1_1:54745232-54745251 | None:intergenic | 40.0% | |
| ! | AGAGGTGCAACTGAATCATT+TGG | - | chr1_1:54745261-54745280 | None:intergenic | 40.0% |
| TGATTCAGTTGCACCTCTTA+TGG | + | chr1_1:54745263-54745282 | Msa0029400:CDS | 40.0% | |
| GATTCAGTTGCACCTCTTAT+GGG | + | chr1_1:54745264-54745283 | Msa0029400:CDS | 40.0% | |
| CAATCCTCTTCAAAAACAGG+TGG | - | chr1_1:54745306-54745325 | None:intergenic | 40.0% | |
| GGGTTCAAAGGAACATAAGA+AGG | - | chr1_1:54745342-54745361 | None:intergenic | 40.0% | |
| GGACCAAGATAATTGCAAGA+AGG | - | chr1_1:54745372-54745391 | None:intergenic | 40.0% | |
| GCAGTAGTAAGAGAACCATT+AGG | - | chr1_1:54745417-54745436 | None:intergenic | 40.0% | |
| GCTTTGTCTACTGATAGTTC+TGG | + | chr1_1:54745435-54745454 | Msa0029400:CDS | 40.0% | |
| !! | GATAGTTCTGGTTTGTTTGG+TGG | + | chr1_1:54745447-54745466 | Msa0029400:CDS | 40.0% |
| ATTGTCCTGATCCTATTCAG+AGG | + | chr1_1:54745538-54745557 | Msa0029400:CDS | 40.0% | |
| TTGTCCTGATCCTATTCAGA+GGG | + | chr1_1:54745539-54745558 | Msa0029400:CDS | 40.0% | |
| GTTCAACTGATTGAATCGAG+TGG | - | chr1_1:54745792-54745811 | None:intergenic | 40.0% | |
| ! | CTTTTTGCAAAAGGTCATGG+TGG | + | chr1_1:54746062-54746081 | Msa0029400:intron | 40.0% |
| TATATTGGCCAGTAGCAGAA+AGG | + | chr1_1:54746212-54746231 | Msa0029400:intron | 40.0% | |
| TTGTGATTCCTTTCTGCTAC+TGG | - | chr1_1:54746223-54746242 | None:intergenic | 40.0% | |
| !! | GCTACTAGTTGTTGATTCTC+AGG | - | chr1_1:54746383-54746402 | None:intergenic | 40.0% |
| GAGAATCAACAACTAGTAGC+TGG | + | chr1_1:54746383-54746402 | Msa0029400:CDS | 40.0% | |
| GACACCAGAAATCTCAAACT+TGG | + | chr1_1:54746427-54746446 | Msa0029400:CDS | 40.0% | |
| CGGCATGCATACTACATATT+TGG | - | chr1_1:54746718-54746737 | None:intergenic | 40.0% | |
| ACTACAGGTAGTTGTGAAAG+AGG | + | chr1_1:54747067-54747086 | Msa0029400:intron | 40.0% | |
| CAGAATTCTGCAAAGCTTCT+GGG | - | chr1_1:54744855-54744874 | None:intergenic | 40.0% | |
| TCAGAATTCTGCAAAGCTTC+TGG | - | chr1_1:54744856-54744875 | None:intergenic | 40.0% | |
| AGAAGCTTTGCAGAATTCTG+AGG | + | chr1_1:54744855-54744874 | Msa0029400:CDS | 40.0% | |
| ATACTGCGAAAACCCATCAA+CGG | - | chr1_1:54745232-54745251 | None:intergenic | 40.0% | |
| ! | AGAGGTGCAACTGAATCATT+TGG | - | chr1_1:54745261-54745280 | None:intergenic | 40.0% |
| TGATTCAGTTGCACCTCTTA+TGG | + | chr1_1:54745263-54745282 | Msa0029400:CDS | 40.0% | |
| GATTCAGTTGCACCTCTTAT+GGG | + | chr1_1:54745264-54745283 | Msa0029400:CDS | 40.0% | |
| CAATCCTCTTCAAAAACAGG+TGG | - | chr1_1:54745306-54745325 | None:intergenic | 40.0% | |
| GGGTTCAAAGGAACATAAGA+AGG | - | chr1_1:54745342-54745361 | None:intergenic | 40.0% | |
| GGACCAAGATAATTGCAAGA+AGG | - | chr1_1:54745372-54745391 | None:intergenic | 40.0% | |
| GCAGTAGTAAGAGAACCATT+AGG | - | chr1_1:54745417-54745436 | None:intergenic | 40.0% | |
| GCTTTGTCTACTGATAGTTC+TGG | + | chr1_1:54745435-54745454 | Msa0029400:CDS | 40.0% | |
| !! | GATAGTTCTGGTTTGTTTGG+TGG | + | chr1_1:54745447-54745466 | Msa0029400:CDS | 40.0% |
| ATTGTCCTGATCCTATTCAG+AGG | + | chr1_1:54745538-54745557 | Msa0029400:CDS | 40.0% | |
| TTGTCCTGATCCTATTCAGA+GGG | + | chr1_1:54745539-54745558 | Msa0029400:CDS | 40.0% | |
| GTTCAACTGATTGAATCGAG+TGG | - | chr1_1:54745792-54745811 | None:intergenic | 40.0% | |
| ! | CTTTTTGCAAAAGGTCATGG+TGG | + | chr1_1:54746062-54746081 | Msa0029400:intron | 40.0% |
| TATATTGGCCAGTAGCAGAA+AGG | + | chr1_1:54746212-54746231 | Msa0029400:intron | 40.0% | |
| TTGTGATTCCTTTCTGCTAC+TGG | - | chr1_1:54746223-54746242 | None:intergenic | 40.0% | |
| !! | GCTACTAGTTGTTGATTCTC+AGG | - | chr1_1:54746383-54746402 | None:intergenic | 40.0% |
| GAGAATCAACAACTAGTAGC+TGG | + | chr1_1:54746383-54746402 | Msa0029400:CDS | 40.0% | |
| GACACCAGAAATCTCAAACT+TGG | + | chr1_1:54746427-54746446 | Msa0029400:CDS | 40.0% | |
| CGGCATGCATACTACATATT+TGG | - | chr1_1:54746718-54746737 | None:intergenic | 40.0% | |
| ACTACAGGTAGTTGTGAAAG+AGG | + | chr1_1:54747067-54747086 | Msa0029400:intron | 40.0% | |
| CGAAAATTCGAGCGCTAAGA+GGG | - | chr1_1:54744810-54744829 | None:intergenic | 45.0% | |
| TCGAAAATTCGAGCGCTAAG+AGG | - | chr1_1:54744811-54744830 | None:intergenic | 45.0% | |
| GATGTGACTGGAAGGAATGA+AGG | - | chr1_1:54745135-54745154 | None:intergenic | 45.0% | |
| !! | ACTTGCTGTGATGATGTGAC+TGG | - | chr1_1:54745147-54745166 | None:intergenic | 45.0% |
| ACAGCATGTTCATCCGTTGA+TGG | + | chr1_1:54745216-54745235 | Msa0029400:CDS | 45.0% | |
| CAGCATGTTCATCCGTTGAT+GGG | + | chr1_1:54745217-54745236 | Msa0029400:CDS | 45.0% | |
| GATAAAGGAGCTCCCATAAG+AGG | - | chr1_1:54745279-54745298 | None:intergenic | 45.0% | |
| GAAGGAGAAGAAGGGTTCAA+AGG | - | chr1_1:54745354-54745373 | None:intergenic | 45.0% | |
| TGCAATTATCTTGGTCCTGC+CGG | + | chr1_1:54745375-54745394 | Msa0029400:CDS | 45.0% | |
| AACACCCTCTGAATAGGATC+AGG | - | chr1_1:54745546-54745565 | None:intergenic | 45.0% | |
| GGGTTAAACACCCTCTGAAT+AGG | - | chr1_1:54745552-54745571 | None:intergenic | 45.0% | |
| TCAATACCTGAAGGTCAGGA+GGG | - | chr1_1:54745572-54745591 | None:intergenic | 45.0% | |
| ACAGTCAATACCTGAAGGTC+AGG | - | chr1_1:54745576-54745595 | None:intergenic | 45.0% | |
| GAACTGAGAATCGACCAGTT+TGG | + | chr1_1:54745808-54745827 | Msa0029400:intron | 45.0% | |
| GACAAAACCAACTGCCAAAC+TGG | - | chr1_1:54745825-54745844 | None:intergenic | 45.0% | |
| !! | TGAGATTTCTGGTGTCAGAG+TGG | - | chr1_1:54746423-54746442 | None:intergenic | 45.0% |
| CTTGGAAGACTCCACTTTCA+AGG | + | chr1_1:54746445-54746464 | Msa0029400:CDS | 45.0% | |
| GAAGACTCCACTTTCAAGGT+TGG | + | chr1_1:54746449-54746468 | Msa0029400:CDS | 45.0% | |
| TCTAACTCGAGGTCTGCTAT+CGG | - | chr1_1:54746752-54746771 | None:intergenic | 45.0% | |
| AACTTGGCTAATGCGCTGTT+TGG | + | chr1_1:54746922-54746941 | Msa0029400:intron | 45.0% | |
| CGAAAATTCGAGCGCTAAGA+GGG | - | chr1_1:54744810-54744829 | None:intergenic | 45.0% | |
| TCGAAAATTCGAGCGCTAAG+AGG | - | chr1_1:54744811-54744830 | None:intergenic | 45.0% | |
| GATGTGACTGGAAGGAATGA+AGG | - | chr1_1:54745135-54745154 | None:intergenic | 45.0% | |
| !! | ACTTGCTGTGATGATGTGAC+TGG | - | chr1_1:54745147-54745166 | None:intergenic | 45.0% |
| ACAGCATGTTCATCCGTTGA+TGG | + | chr1_1:54745216-54745235 | Msa0029400:CDS | 45.0% | |
| CAGCATGTTCATCCGTTGAT+GGG | + | chr1_1:54745217-54745236 | Msa0029400:CDS | 45.0% | |
| GATAAAGGAGCTCCCATAAG+AGG | - | chr1_1:54745279-54745298 | None:intergenic | 45.0% | |
| GAAGGAGAAGAAGGGTTCAA+AGG | - | chr1_1:54745354-54745373 | None:intergenic | 45.0% | |
| TGCAATTATCTTGGTCCTGC+CGG | + | chr1_1:54745375-54745394 | Msa0029400:CDS | 45.0% | |
| AACACCCTCTGAATAGGATC+AGG | - | chr1_1:54745546-54745565 | None:intergenic | 45.0% | |
| GGGTTAAACACCCTCTGAAT+AGG | - | chr1_1:54745552-54745571 | None:intergenic | 45.0% | |
| TCAATACCTGAAGGTCAGGA+GGG | - | chr1_1:54745572-54745591 | None:intergenic | 45.0% | |
| ACAGTCAATACCTGAAGGTC+AGG | - | chr1_1:54745576-54745595 | None:intergenic | 45.0% | |
| GAACTGAGAATCGACCAGTT+TGG | + | chr1_1:54745808-54745827 | Msa0029400:intron | 45.0% | |
| GACAAAACCAACTGCCAAAC+TGG | - | chr1_1:54745825-54745844 | None:intergenic | 45.0% | |
| !! | TGAGATTTCTGGTGTCAGAG+TGG | - | chr1_1:54746423-54746442 | None:intergenic | 45.0% |
| CTTGGAAGACTCCACTTTCA+AGG | + | chr1_1:54746445-54746464 | Msa0029400:CDS | 45.0% | |
| GAAGACTCCACTTTCAAGGT+TGG | + | chr1_1:54746449-54746468 | Msa0029400:CDS | 45.0% | |
| TCTAACTCGAGGTCTGCTAT+CGG | - | chr1_1:54746752-54746771 | None:intergenic | 45.0% | |
| AACTTGGCTAATGCGCTGTT+TGG | + | chr1_1:54746922-54746941 | Msa0029400:intron | 45.0% | |
| ! | GCTGTGATGATGTGACTGGA+AGG | - | chr1_1:54745143-54745162 | None:intergenic | 50.0% |
| TTATCTTGGTCCTGCCGGTA+TGG | + | chr1_1:54745380-54745399 | Msa0029400:CDS | 50.0% | |
| ATGGCGGCATACATGCCTAA+TGG | + | chr1_1:54745399-54745418 | Msa0029400:CDS | 50.0% | |
| GTTTAACCCTCCTGACCTTC+AGG | + | chr1_1:54745563-54745582 | Msa0029400:CDS | 50.0% | |
| GTCAATACCTGAAGGTCAGG+AGG | - | chr1_1:54745573-54745592 | None:intergenic | 50.0% | |
| GAATCGACCAGTTTGGCAGT+TGG | + | chr1_1:54745815-54745834 | Msa0029400:intron | 50.0% | |
| CAACAACTAGTAGCTGGTGC+TGG | + | chr1_1:54746389-54746408 | Msa0029400:CDS | 50.0% | |
| GTATGCATGCCGCAAAACTC+TGG | + | chr1_1:54746726-54746745 | Msa0029400:intron | 50.0% | |
| ! | TGCTATCGGCCAGAGTTTTG+CGG | - | chr1_1:54746738-54746757 | None:intergenic | 50.0% |
| GATAGCAGACCTCGAGTTAG+AGG | + | chr1_1:54746751-54746770 | Msa0029400:CDS | 50.0% | |
| GCAAATCGTCCTCTAACTCG+AGG | - | chr1_1:54746763-54746782 | None:intergenic | 50.0% | |
| ! | GCTGTGATGATGTGACTGGA+AGG | - | chr1_1:54745143-54745162 | None:intergenic | 50.0% |
| TTATCTTGGTCCTGCCGGTA+TGG | + | chr1_1:54745380-54745399 | Msa0029400:CDS | 50.0% | |
| ATGGCGGCATACATGCCTAA+TGG | + | chr1_1:54745399-54745418 | Msa0029400:CDS | 50.0% | |
| GTTTAACCCTCCTGACCTTC+AGG | + | chr1_1:54745563-54745582 | Msa0029400:CDS | 50.0% | |
| GTCAATACCTGAAGGTCAGG+AGG | - | chr1_1:54745573-54745592 | None:intergenic | 50.0% | |
| GAATCGACCAGTTTGGCAGT+TGG | + | chr1_1:54745815-54745834 | Msa0029400:intron | 50.0% | |
| CAACAACTAGTAGCTGGTGC+TGG | + | chr1_1:54746389-54746408 | Msa0029400:CDS | 50.0% | |
| GTATGCATGCCGCAAAACTC+TGG | + | chr1_1:54746726-54746745 | Msa0029400:intron | 50.0% | |
| ! | TGCTATCGGCCAGAGTTTTG+CGG | - | chr1_1:54746738-54746757 | None:intergenic | 50.0% |
| GATAGCAGACCTCGAGTTAG+AGG | + | chr1_1:54746751-54746770 | Msa0029400:CDS | 50.0% | |
| GCAAATCGTCCTCTAACTCG+AGG | - | chr1_1:54746763-54746782 | None:intergenic | 50.0% | |
| AGGCATGTATGCCGCCATAC+CGG | - | chr1_1:54745397-54745416 | None:intergenic | 55.0% | |
| AGGCATGTATGCCGCCATAC+CGG | - | chr1_1:54745397-54745416 | None:intergenic | 55.0% | |
| TCTTGGTCCTGCCGGTATGG+CGG | + | chr1_1:54745383-54745402 | Msa0029400:CDS | 60.0% | |
| ATGTATGCCGCCATACCGGC+AGG | - | chr1_1:54745393-54745412 | None:intergenic | 60.0% | |
| TCTTGGTCCTGCCGGTATGG+CGG | + | chr1_1:54745383-54745402 | Msa0029400:CDS | 60.0% | |
| ATGTATGCCGCCATACCGGC+AGG | - | chr1_1:54745393-54745412 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 54744757 | 54747181 | 54744757 | ID=Msa0029400;Name=Msa0029400 |
| chr1_1 | mRNA | 54744757 | 54747181 | 54744757 | ID=Msa0029400-mRNA-1;Parent=Msa0029400;Name=Msa0029400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|415 |
| chr1_1 | exon | 54744757 | 54745584 | 54744757 | ID=Msa0029400-mRNA-1:exon:16308;Parent=Msa0029400-mRNA-1 |
| chr1_1 | exon | 54746371 | 54746556 | 54746371 | ID=Msa0029400-mRNA-1:exon:16309;Parent=Msa0029400-mRNA-1 |
| chr1_1 | exon | 54746727 | 54746852 | 54746727 | ID=Msa0029400-mRNA-1:exon:16310;Parent=Msa0029400-mRNA-1 |
| chr1_1 | exon | 54747074 | 54747181 | 54747074 | ID=Msa0029400-mRNA-1:exon:16311;Parent=Msa0029400-mRNA-1 |
| chr1_1 | CDS | 54744757 | 54745584 | 54744757 | ID=Msa0029400-mRNA-1:cds;Parent=Msa0029400-mRNA-1 |
| chr1_1 | CDS | 54746371 | 54746556 | 54746371 | ID=Msa0029400-mRNA-1:cds;Parent=Msa0029400-mRNA-1 |
| chr1_1 | CDS | 54746727 | 54746852 | 54746727 | ID=Msa0029400-mRNA-1:cds;Parent=Msa0029400-mRNA-1 |
| chr1_1 | CDS | 54747074 | 54747181 | 54747074 | ID=Msa0029400-mRNA-1:cds;Parent=Msa0029400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
