Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169430 | KEH42657.1 | 99.518 | 415 | 1 | 1 | 1 | 415 | 1 | 414 | 0.0 | 842 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169430 | A0A072VLD7 | 99.518 | 415 | 1 | 1 | 1 | 415 | 1 | 414 | 0.0 | 842 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0169430 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029400 | Msa0169430 | 0.985157 | 1.061753e-162 | -8.615850e-47 |
| Msa0124890 | Msa0169430 | 0.908979 | 9.443509e-82 | -8.615850e-47 |
| Msa0169430 | Msa1002410 | 0.911905 | 3.580598e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169430 | MtrunA17_Chr1g0186171 | 99.518 | 415 | 1 | 1 | 1 | 415 | 1 | 414 | 0.0 | 842 |
| Msa0169430 | MtrunA17_Chr1g0168401 | 62.818 | 433 | 125 | 12 | 1 | 415 | 1 | 415 | 2.74e-152 | 437 |
| Msa0169430 | MtrunA17_Chr8g0387241 | 35.545 | 211 | 104 | 7 | 209 | 409 | 133 | 321 | 1.07e-23 | 100 |
| Msa0169430 | MtrunA17_Chr2g0311591 | 54.545 | 77 | 35 | 0 | 298 | 374 | 151 | 227 | 2.69e-21 | 92.8 |
| Msa0169430 | MtrunA17_Chr5g0397361 | 56.944 | 72 | 31 | 0 | 289 | 360 | 145 | 216 | 6.13e-20 | 88.6 |
| Msa0169430 | MtrunA17_Chr2g0327621 | 45.918 | 98 | 51 | 1 | 265 | 362 | 105 | 200 | 2.14e-19 | 87.0 |
| Msa0169430 | MtrunA17_Chr4g0030421 | 57.377 | 61 | 26 | 0 | 302 | 362 | 20 | 80 | 2.91e-18 | 80.9 |
| Msa0169430 | MtrunA17_Chr1g0147111 | 36.296 | 135 | 69 | 4 | 229 | 362 | 159 | 277 | 1.25e-16 | 79.7 |
| Msa0169430 | MtrunA17_Chr3g0126721 | 65.306 | 49 | 17 | 0 | 313 | 361 | 226 | 274 | 5.70e-15 | 74.7 |
| Msa0169430 | MtrunA17_Chr3g0136701 | 42.308 | 78 | 39 | 1 | 288 | 365 | 209 | 280 | 3.10e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169430 | AT1G04500.3 | 51.069 | 421 | 147 | 15 | 9 | 415 | 2 | 377 | 1.44e-118 | 350 |
| Msa0169430 | AT1G04500.4 | 51.069 | 421 | 147 | 15 | 9 | 415 | 11 | 386 | 6.27e-118 | 349 |
| Msa0169430 | AT1G04500.1 | 51.069 | 421 | 147 | 15 | 9 | 415 | 11 | 386 | 6.27e-118 | 349 |
| Msa0169430 | AT2G33350.2 | 49.531 | 426 | 159 | 16 | 13 | 415 | 17 | 409 | 1.34e-101 | 308 |
| Msa0169430 | AT2G33350.4 | 49.531 | 426 | 159 | 16 | 13 | 415 | 6 | 398 | 2.01e-101 | 307 |
| Msa0169430 | AT2G33350.5 | 49.531 | 426 | 159 | 16 | 13 | 415 | 26 | 418 | 5.23e-101 | 307 |
| Msa0169430 | AT2G33350.1 | 48.946 | 427 | 161 | 16 | 13 | 415 | 17 | 410 | 7.42e-100 | 303 |
| Msa0169430 | AT1G04500.2 | 45.376 | 346 | 126 | 16 | 9 | 338 | 11 | 309 | 8.39e-70 | 225 |
| Msa0169430 | AT2G33350.3 | 43.678 | 348 | 141 | 15 | 13 | 338 | 17 | 331 | 9.61e-60 | 198 |
| Msa0169430 | AT5G41380.1 | 56.250 | 96 | 33 | 3 | 266 | 361 | 173 | 259 | 1.11e-23 | 100 |
| Msa0169430 | AT1G63820.1 | 40.833 | 120 | 69 | 1 | 264 | 381 | 137 | 256 | 2.44e-23 | 99.8 |
| Msa0169430 | AT3G12890.1 | 52.809 | 89 | 36 | 1 | 308 | 396 | 130 | 212 | 4.21e-22 | 95.1 |
| Msa0169430 | AT4G27900.1 | 38.144 | 97 | 45 | 2 | 266 | 362 | 178 | 259 | 4.92e-16 | 78.2 |
| Msa0169430 | AT4G27900.2 | 38.144 | 97 | 45 | 2 | 266 | 362 | 178 | 259 | 4.92e-16 | 78.2 |
| Msa0169430 | AT5G53420.2 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.12e-15 | 73.9 |
| Msa0169430 | AT5G53420.5 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.12e-15 | 73.9 |
| Msa0169430 | AT5G53420.4 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.12e-15 | 73.9 |
| Msa0169430 | AT5G59990.1 | 39.850 | 133 | 63 | 3 | 265 | 397 | 120 | 235 | 3.41e-15 | 75.1 |
| Msa0169430 | AT5G53420.1 | 65.957 | 47 | 16 | 0 | 315 | 361 | 216 | 262 | 6.67e-15 | 74.7 |
| Msa0169430 | AT5G24930.1 | 40.000 | 70 | 42 | 0 | 297 | 366 | 275 | 344 | 9.97e-11 | 63.5 |
Find 78 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCCAAGTTTGAGATTTC+TGG | 0.139924 | 1_4:-52669064 | None:intergenic |
| TGATTCAGTTGCACCTCTTA+TGG | 0.196419 | 1_4:+52667344 | Msa0169430:CDS |
| TTTGCAAAGAATGATGATTT+TGG | 0.203362 | 1_4:+52669411 | Msa0169430:CDS |
| TCAGAATTCTGCAAAGCTTC+TGG | 0.225403 | 1_4:-52666934 | None:intergenic |
| TCCTGTAAACATTGATATAA+AGG | 0.285030 | 1_4:-52666853 | None:intergenic |
| GTTTAACCCTCCTGACCTTC+AGG | 0.295741 | 1_4:+52667644 | Msa0169430:CDS |
| TCTCCTTCTTGCAATTATCT+TGG | 0.304557 | 1_4:+52667447 | Msa0169430:CDS |
| TGATAGATTATTGCTATTGT+TGG | 0.307253 | 1_4:-52667109 | None:intergenic |
| TGGTTTGTTTGGTGGAAATA+TGG | 0.310217 | 1_4:+52667536 | Msa0169430:CDS |
| TCCTTTATATCAATGTTTAC+AGG | 0.317206 | 1_4:+52666852 | Msa0169430:CDS |
| TCGAAAATTCGAGCGCTAAG+AGG | 0.329398 | 1_4:-52666889 | None:intergenic |
| ACTGATAGTTCTGGTTTGTT+TGG | 0.336862 | 1_4:+52667525 | Msa0169430:CDS |
| TAATATATTTGTTGCATATG+AGG | 0.345362 | 1_4:-52666995 | None:intergenic |
| GATTCAGTTGCACCTCTTAT+GGG | 0.348322 | 1_4:+52667345 | Msa0169430:CDS |
| GCTTTGTCTACTGATAGTTC+TGG | 0.348575 | 1_4:+52667516 | Msa0169430:CDS |
| AAACTTCAGCAAGAAAATTA+AGG | 0.349765 | 1_4:+52669168 | Msa0169430:CDS |
| CTTGGAAGACTCCACTTTCA+AGG | 0.364962 | 1_4:+52669078 | Msa0169430:CDS |
| AAAACAGGTGGTAATGATAA+AGG | 0.370742 | 1_4:-52667372 | None:intergenic |
| CTTGATTATCAAGGAGATAA+TGG | 0.371169 | 1_4:+52667588 | Msa0169430:CDS |
| AGAGGTGCAACTGAATCATT+TGG | 0.378768 | 1_4:-52667339 | None:intergenic |
| GTTGATATTGTTGTTTGTGC+TGG | 0.381949 | 1_4:-52667076 | None:intergenic |
| GCTACTAGTTGTTGATTCTC+AGG | 0.396916 | 1_4:-52669013 | None:intergenic |
| CAGAATTCTGCAAAGCTTCT+GGG | 0.401559 | 1_4:-52666933 | None:intergenic |
| GGGTTAAACACCCTCTGAAT+AGG | 0.414662 | 1_4:-52667630 | None:intergenic |
| AATGGAATAGTTGCATTTGA+AGG | 0.424110 | 1_4:-52669777 | None:intergenic |
| TGCAATTATCTTGGTCCTGC+CGG | 0.431147 | 1_4:+52667456 | Msa0169430:CDS |
| GCAACTATTCCATTCAATCA+TGG | 0.437657 | 1_4:+52669786 | Msa0169430:CDS |
| GATAGTTCTGGTTTGTTTGG+TGG | 0.449481 | 1_4:+52667528 | Msa0169430:CDS |
| TAATTGCAAGAAGGAGAAGA+AGG | 0.453970 | 1_4:-52667441 | None:intergenic |
| ATATTGTTGTTTGTGCTGGT+TGG | 0.455798 | 1_4:-52667072 | None:intergenic |
| ACAGCATGTTCATCCGTTGA+TGG | 0.462537 | 1_4:+52667297 | Msa0169430:CDS |
| TTATCTTGGTCCTGCCGGTA+TGG | 0.463392 | 1_4:+52667461 | Msa0169430:CDS |
| TGTGAAAGAGGAAGATGATA+TGG | 0.463481 | 1_4:+52669712 | Msa0169430:CDS |
| GACACCAGAAATCTCAAACT+TGG | 0.464943 | 1_4:+52669060 | Msa0169430:CDS |
| CGAAAATTCGAGCGCTAAGA+GGG | 0.464964 | 1_4:-52666888 | None:intergenic |
| TGAAGAAGAAGATGAAGAAG+AGG | 0.466581 | 1_4:+52669464 | Msa0169430:CDS |
| GAAGACTCCACTTTCAAGGT+TGG | 0.473074 | 1_4:+52669082 | Msa0169430:CDS |
| ACAGTCAATACCTGAAGGTC+AGG | 0.480367 | 1_4:-52667654 | None:intergenic |
| GATAGCAGACCTCGAGTTAG+AGG | 0.482620 | 1_4:+52669384 | Msa0169430:CDS |
| GAATCAAATCCATGATTGAA+TGG | 0.483820 | 1_4:-52669795 | None:intergenic |
| CAGCATGTTCATCCGTTGAT+GGG | 0.484565 | 1_4:+52667298 | Msa0169430:CDS |
| GCAGTAGTAAGAGAACCATT+AGG | 0.493364 | 1_4:-52667495 | None:intergenic |
| ATGGCGGCATACATGCCTAA+TGG | 0.504835 | 1_4:+52667480 | Msa0169430:CDS |
| GTATGCATGCCGCAAAACTC+TGG | 0.507026 | 1_4:+52669359 | Msa0169430:intron |
| GATAAAGGAGCTCCCATAAG+AGG | 0.508957 | 1_4:-52667357 | None:intergenic |
| TTGTCCTGATCCTATTCAGA+GGG | 0.518686 | 1_4:+52667620 | Msa0169430:CDS |
| AACACCCTCTGAATAGGATC+AGG | 0.520235 | 1_4:-52667624 | None:intergenic |
| AATGAAGGAACATTGAAAGA+TGG | 0.520786 | 1_4:-52667198 | None:intergenic |
| ATGTATGCCGCCATACCGGC+AGG | 0.531779 | 1_4:-52667471 | None:intergenic |
| ACTACAGGTAGTTGTGAAAG+AGG | 0.540728 | 1_4:+52669700 | Msa0169430:intron |
| GAGAATCAACAACTAGTAGC+TGG | 0.540899 | 1_4:+52669016 | Msa0169430:CDS |
| ACACAAGAACTTGATTATCA+AGG | 0.541577 | 1_4:+52667579 | Msa0169430:CDS |
| GAAGGAGAAGAAGGGTTCAA+AGG | 0.541723 | 1_4:-52667432 | None:intergenic |
| GAAAACTTTCTGTTGAACAA+AGG | 0.552214 | 1_4:+52669104 | Msa0169430:CDS |
| GGGTTCAAAGGAACATAAGA+AGG | 0.558201 | 1_4:-52667420 | None:intergenic |
| GATATATTTGCTCATATCAG+TGG | 0.567084 | 1_4:+52669746 | Msa0169430:CDS |
| AGGCATGTATGCCGCCATAC+CGG | 0.574531 | 1_4:-52667475 | None:intergenic |
| TCTAACTCGAGGTCTGCTAT+CGG | 0.575030 | 1_4:-52669382 | None:intergenic |
| CAACAACTAGTAGCTGGTGC+TGG | 0.575480 | 1_4:+52669022 | Msa0169430:CDS |
| GATGTGACTGGAAGGAATGA+AGG | 0.578846 | 1_4:-52667213 | None:intergenic |
| AATTGCAAGAAGGAGAAGAA+GGG | 0.582488 | 1_4:-52667440 | None:intergenic |
| ACTTGCTGTGATGATGTGAC+TGG | 0.583948 | 1_4:-52667225 | None:intergenic |
| TCTTGGTCCTGCCGGTATGG+CGG | 0.591145 | 1_4:+52667464 | Msa0169430:CDS |
| AGAAGCTTTGCAGAATTCTG+AGG | 0.591368 | 1_4:+52666936 | Msa0169430:CDS |
| GTCAATACCTGAAGGTCAGG+AGG | 0.601952 | 1_4:-52667651 | None:intergenic |
| ATTGTCCTGATCCTATTCAG+AGG | 0.615011 | 1_4:+52667619 | Msa0169430:CDS |
| TGATAGTGAGAAATCTATTG+AGG | 0.622836 | 1_4:-52667175 | None:intergenic |
| GGACCAAGATAATTGCAAGA+AGG | 0.631874 | 1_4:-52667450 | None:intergenic |
| GCAAATCGTCCTCTAACTCG+AGG | 0.634840 | 1_4:-52669393 | None:intergenic |
| GATATGAGCAAATATATCTG+AGG | 0.650959 | 1_4:-52669741 | None:intergenic |
| TCAATACCTGAAGGTCAGGA+GGG | 0.652626 | 1_4:-52667650 | None:intergenic |
| GATACTAATAGAACTGCTAG+TGG | 0.652698 | 1_4:+52669435 | Msa0169430:CDS |
| GCTGTGATGATGTGACTGGA+AGG | 0.653513 | 1_4:-52667221 | None:intergenic |
| GTAAGTTGAACATGATGATG+AGG | 0.662251 | 1_4:-52667276 | None:intergenic |
| ATACTGCGAAAACCCATCAA+CGG | 0.666515 | 1_4:-52667310 | None:intergenic |
| TGAGATTTCTGGTGTCAGAG+TGG | 0.672060 | 1_4:-52669053 | None:intergenic |
| TAAAGGAAATGTAAACAACA+TGG | 0.694278 | 1_4:-52666836 | None:intergenic |
| TAGCAATAGCAATAACACAG+TGG | 0.772848 | 1_4:+52667041 | Msa0169430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTACTTTTTCATT+TGG | + | chr1_4:52667949-52667968 | Msa0169430:intron | 10.0% |
| !! | AAAATAAATGTTTCAAAAAT+CGG | - | chr1_4:52668056-52668075 | None:intergenic | 10.0% |
| !! | GAAAAAATCATAAAAAATTT+CGG | + | chr1_4:52668578-52668597 | Msa0169430:intron | 10.0% |
| !! | AAAAAATCGTAAAAAAAAAT+GGG | + | chr1_4:52668647-52668666 | Msa0169430:intron | 10.0% |
| !! | TAAAAAATAACTATGGAAAA+TGG | - | chr1_4:52667748-52667767 | None:intergenic | 15.0% |
| !! | TCATTCATAAAAAATAACTA+TGG | - | chr1_4:52667755-52667774 | None:intergenic | 15.0% |
| !! | TAAAACAGTATTATTATCAA+GGG | + | chr1_4:52668303-52668322 | Msa0169430:intron | 15.0% |
| !!! | TTTTTTTTACGATTTTTTCT+CGG | - | chr1_4:52668645-52668664 | None:intergenic | 15.0% |
| !! | GAAAAAATCGTAAAAAAAAA+TGG | + | chr1_4:52668646-52668665 | Msa0169430:intron | 15.0% |
| !! | AAAAATCGTAAAAAAAAATG+GGG | + | chr1_4:52668648-52668667 | Msa0169430:intron | 15.0% |
| !!! | ATAATGCTAATTTATTTTTC+AGG | + | chr1_4:52668982-52669001 | Msa0169430:intron | 15.0% |
| !! | TATCTACTTATTTATTTGAT+TGG | + | chr1_4:52669642-52669661 | Msa0169430:intron | 15.0% |
| !!! | TAATATATTTGTTGCATATG+AGG | - | chr1_4:52666998-52667017 | None:intergenic | 20.0% |
| !! | AATATACAAAAAATGAGAAC+AGG | - | chr1_4:52667934-52667953 | None:intergenic | 20.0% |
| !!! | TTATTTTAAAGCTTTGTAAG+AGG | + | chr1_4:52668069-52668088 | Msa0169430:intron | 20.0% |
| !!! | ATGCTACTTTTTTTTTTTGT+AGG | - | chr1_4:52668227-52668246 | None:intergenic | 20.0% |
| !! | AAAAAAGTAGCATAGTATAT+TGG | + | chr1_4:52668234-52668253 | Msa0169430:intron | 20.0% |
| !!! | CTTTTTTCCAATAAAATTGA+TGG | + | chr1_4:52668280-52668299 | Msa0169430:intron | 20.0% |
| !!! | TGTTTTACCATCAATTTTAT+TGG | - | chr1_4:52668290-52668309 | None:intergenic | 20.0% |
| !! | GTAAAACAGTATTATTATCA+AGG | + | chr1_4:52668302-52668321 | Msa0169430:intron | 20.0% |
| !!! | TGGAAAAAAAAGTTTTTTGA+AGG | + | chr1_4:52668678-52668697 | Msa0169430:intron | 20.0% |
| !! | ACAAAAAAAAAAAATAAGCC+AGG | + | chr1_4:52668706-52668725 | Msa0169430:intron | 20.0% |
| !! | CAAAAAAAAAAAATAAGCCA+GGG | + | chr1_4:52668707-52668726 | Msa0169430:intron | 20.0% |
| !! | AAAAAAAAAAAATAAGCCAG+GGG | + | chr1_4:52668708-52668727 | Msa0169430:intron | 20.0% |
| !!! | TTTAACTGATTAAATTTTGC+AGG | + | chr1_4:52668806-52668825 | Msa0169430:intron | 20.0% |
| !!! | TTAACTGATTAAATTTTGCA+GGG | + | chr1_4:52668807-52668826 | Msa0169430:intron | 20.0% |
| !!! | AAAAAAAAAGGATTAGTGAT+TGG | + | chr1_4:52668832-52668851 | Msa0169430:intron | 20.0% |
| !! | TTACAAGTTTATATTCAACT+TGG | + | chr1_4:52669539-52669558 | Msa0169430:intron | 20.0% |
| ! | TCCTTTATATCAATGTTTAC+AGG | + | chr1_4:52666852-52666871 | Msa0169430:CDS | 25.0% |
| ! | TCCTGTAAACATTGATATAA+AGG | - | chr1_4:52666856-52666875 | None:intergenic | 25.0% |
| !! | TGATAGATTATTGCTATTGT+TGG | - | chr1_4:52667112-52667131 | None:intergenic | 25.0% |
| ! | TTAGTCATCCAATTCAATTA+TGG | + | chr1_4:52667975-52667994 | Msa0169430:intron | 25.0% |
| ! | AGTTCAAACCATAATTGAAT+TGG | - | chr1_4:52667986-52668005 | None:intergenic | 25.0% |
| ! | AAATGTTTCAAAAATCGGAT+TGG | - | chr1_4:52668051-52668070 | None:intergenic | 25.0% |
| !! | AGGTAATTTCTTTTTGCAAA+AGG | + | chr1_4:52668089-52668108 | Msa0169430:intron | 25.0% |
| ! | ATAAACTGTTTACATATCTG+TGG | - | chr1_4:52668125-52668144 | None:intergenic | 25.0% |
| ! | ATATTGGCATATATTCTATG+CGG | - | chr1_4:52668149-52668168 | None:intergenic | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | - | chr1_4:52668406-52668425 | None:intergenic | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | - | chr1_4:52668407-52668426 | None:intergenic | 25.0% |
| ! | TAAGGAAAAAAAATAAGCCA+GGG | - | chr1_4:52668506-52668525 | None:intergenic | 25.0% |
| ! | TTAAGGAAAAAAAATAAGCC+AGG | - | chr1_4:52668507-52668526 | None:intergenic | 25.0% |
| ! | AAAAAAAATGGGGAAAAATC+TGG | + | chr1_4:52668658-52668677 | Msa0169430:intron | 25.0% |
| !! | TAACTGATTAAATTTTGCAG+GGG | + | chr1_4:52668808-52668827 | Msa0169430:intron | 25.0% |
| !! | GAAATAGGACATTGATAATA+GGG | - | chr1_4:52668910-52668929 | None:intergenic | 25.0% |
| !! | TGAAATAGGACATTGATAAT+AGG | - | chr1_4:52668911-52668930 | None:intergenic | 25.0% |
| ! | AATGTCCTATTTCATATGAA+TGG | + | chr1_4:52668917-52668936 | Msa0169430:intron | 25.0% |
| ! | AAGAACCATTCATATGAAAT+AGG | - | chr1_4:52668925-52668944 | None:intergenic | 25.0% |
| ! | AAACTTCAGCAAGAAAATTA+AGG | + | chr1_4:52669168-52669187 | Msa0169430:CDS | 25.0% |
| ! | AAGTAACATGATAACTGATA+AGG | - | chr1_4:52669243-52669262 | None:intergenic | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr1_4:52669411-52669430 | Msa0169430:CDS | 25.0% |
| ! | TATAAACTTGTAAAGTGTGT+CGG | - | chr1_4:52669532-52669551 | None:intergenic | 25.0% |
| ! | TGATAGTGAGAAATCTATTG+AGG | - | chr1_4:52667178-52667197 | None:intergenic | 30.0% |
| AATGAAGGAACATTGAAAGA+TGG | - | chr1_4:52667201-52667220 | None:intergenic | 30.0% | |
| ! | AAAACAGGTGGTAATGATAA+AGG | - | chr1_4:52667375-52667394 | None:intergenic | 30.0% |
| ! | TTTGGTGGAAATATGGTTTT+TGG | + | chr1_4:52667543-52667562 | Msa0169430:CDS | 30.0% |
| ACACAAGAACTTGATTATCA+AGG | + | chr1_4:52667579-52667598 | Msa0169430:CDS | 30.0% | |
| CTTGATTATCAAGGAGATAA+TGG | + | chr1_4:52667588-52667607 | Msa0169430:CDS | 30.0% | |
| !!! | CAAGCGATGTTTTTTAAAAC+TGG | + | chr1_4:52667796-52667815 | Msa0169430:intron | 30.0% |
| TACAAAAAATGAGAACAGGT+TGG | - | chr1_4:52667930-52667949 | None:intergenic | 30.0% | |
| ACTTTAGGTCATTGTTCAAT+TGG | - | chr1_4:52668016-52668035 | None:intergenic | 30.0% | |
| TGGAGATCTTGTAAAACTTT+AGG | - | chr1_4:52668031-52668050 | None:intergenic | 30.0% | |
| ! | TTTCTTTTTGCAAAAGGTCA+TGG | + | chr1_4:52668095-52668114 | Msa0169430:intron | 30.0% |
| TAACTGATTAAACTTTGCAG+GGG | - | chr1_4:52668405-52668424 | None:intergenic | 30.0% | |
| AAGGAAAAAAAATAAGCCAG+GGG | - | chr1_4:52668505-52668524 | None:intergenic | 30.0% | |
| ! | AAAAAAGGATTAGTGATTGG+AGG | + | chr1_4:52668835-52668854 | Msa0169430:intron | 30.0% |
| ! | AAAAAGGATTAGTGATTGGA+GGG | + | chr1_4:52668836-52668855 | Msa0169430:intron | 30.0% |
| TTATCTTCAGATTCAGATTC+TGG | - | chr1_4:52668963-52668982 | None:intergenic | 30.0% | |
| GAAAACTTTCTGTTGAACAA+AGG | + | chr1_4:52669104-52669123 | Msa0169430:CDS | 30.0% | |
| ! | CATTTGATAACTGTAACTAC+AGG | + | chr1_4:52669685-52669704 | Msa0169430:intron | 30.0% |
| GATATGAGCAAATATATCTG+AGG | - | chr1_4:52669744-52669763 | None:intergenic | 30.0% | |
| GATATATTTGCTCATATCAG+TGG | + | chr1_4:52669746-52669765 | Msa0169430:CDS | 30.0% | |
| AATGGAATAGTTGCATTTGA+AGG | - | chr1_4:52669780-52669799 | None:intergenic | 30.0% | |
| TAGCAATAGCAATAACACAG+TGG | + | chr1_4:52667041-52667060 | Msa0169430:CDS | 35.0% | |
| !! | ATATTGTTGTTTGTGCTGGT+TGG | - | chr1_4:52667075-52667094 | None:intergenic | 35.0% |
| !! | GTTGATATTGTTGTTTGTGC+TGG | - | chr1_4:52667079-52667098 | None:intergenic | 35.0% |
| ! | GTAAGTTGAACATGATGATG+AGG | - | chr1_4:52667279-52667298 | None:intergenic | 35.0% |
| !!! | ATTACCACCTGTTTTTGAAG+AGG | + | chr1_4:52667380-52667399 | Msa0169430:CDS | 35.0% |
| ATGCAATCCTCTTCAAAAAC+AGG | - | chr1_4:52667390-52667409 | None:intergenic | 35.0% | |
| AATTGCAAGAAGGAGAAGAA+GGG | - | chr1_4:52667443-52667462 | None:intergenic | 35.0% | |
| TAATTGCAAGAAGGAGAAGA+AGG | - | chr1_4:52667444-52667463 | None:intergenic | 35.0% | |
| TCTCCTTCTTGCAATTATCT+TGG | + | chr1_4:52667447-52667466 | Msa0169430:CDS | 35.0% | |
| !! | ACTGATAGTTCTGGTTTGTT+TGG | + | chr1_4:52667525-52667544 | Msa0169430:CDS | 35.0% |
| !! | TGGTTTGTTTGGTGGAAATA+TGG | + | chr1_4:52667536-52667555 | Msa0169430:CDS | 35.0% |
| TTGAAACAGTCAATACCTGA+AGG | - | chr1_4:52667662-52667681 | None:intergenic | 35.0% | |
| GATTGAACGTAATTGAGTCA+CGG | + | chr1_4:52667899-52667918 | Msa0169430:intron | 35.0% | |
| !!! | GCTACTGTTTTGATGGATAT+TGG | - | chr1_4:52668165-52668184 | None:intergenic | 35.0% |
| !! | ATTGCTAGCTACTGTTTTGA+TGG | - | chr1_4:52668172-52668191 | None:intergenic | 35.0% |
| GGTGAGACTGTGATTATAAA+GGG | - | chr1_4:52668206-52668225 | None:intergenic | 35.0% | |
| AGGTGAGACTGTGATTATAA+AGG | - | chr1_4:52668207-52668226 | None:intergenic | 35.0% | |
| ! | AAAAAGGATTAGCGATTGCA+GGG | - | chr1_4:52668377-52668396 | None:intergenic | 35.0% |
| ! | AAAAAAGGATTAGCGATTGC+AGG | - | chr1_4:52668378-52668397 | None:intergenic | 35.0% |
| CAGTGATTAAATTGGGTCAA+AGG | + | chr1_4:52668776-52668795 | Msa0169430:intron | 35.0% | |
| ! | TTTTGCAGGGGCAAAAAAAA+AGG | + | chr1_4:52668820-52668839 | Msa0169430:intron | 35.0% |
| ! | TCAGATTCAGATTCTGGAAA+GGG | - | chr1_4:52668957-52668976 | None:intergenic | 35.0% |
| ! | TTCAGATTCAGATTCTGGAA+AGG | - | chr1_4:52668958-52668977 | None:intergenic | 35.0% |
| ! | TCTTCCAAGTTTGAGATTTC+TGG | - | chr1_4:52669067-52669086 | None:intergenic | 35.0% |
| ! | AAGTTTTCCAACCTTGAAAG+TGG | - | chr1_4:52669092-52669111 | None:intergenic | 35.0% |
| CAGTTCTGTTTGATTATGCA+TGG | - | chr1_4:52669216-52669235 | None:intergenic | 35.0% | |
| ATATGCAGTAAGAAGAGAAG+TGG | - | chr1_4:52669301-52669320 | None:intergenic | 35.0% | |
| GATACTAATAGAACTGCTAG+TGG | + | chr1_4:52669435-52669454 | Msa0169430:CDS | 35.0% | |
| TGAAGAAGAAGATGAAGAAG+AGG | + | chr1_4:52669464-52669483 | Msa0169430:CDS | 35.0% | |
| TGTGAAAGAGGAAGATGATA+TGG | + | chr1_4:52669712-52669731 | Msa0169430:CDS | 35.0% | |
| GCAACTATTCCATTCAATCA+TGG | + | chr1_4:52669786-52669805 | Msa0169430:CDS | 35.0% | |
| CAGAATTCTGCAAAGCTTCT+GGG | - | chr1_4:52666936-52666955 | None:intergenic | 40.0% | |
| TCAGAATTCTGCAAAGCTTC+TGG | - | chr1_4:52666937-52666956 | None:intergenic | 40.0% | |
| AGAAGCTTTGCAGAATTCTG+AGG | + | chr1_4:52666936-52666955 | Msa0169430:CDS | 40.0% | |
| ATACTGCGAAAACCCATCAA+CGG | - | chr1_4:52667313-52667332 | None:intergenic | 40.0% | |
| ! | AGAGGTGCAACTGAATCATT+TGG | - | chr1_4:52667342-52667361 | None:intergenic | 40.0% |
| TGATTCAGTTGCACCTCTTA+TGG | + | chr1_4:52667344-52667363 | Msa0169430:CDS | 40.0% | |
| GATTCAGTTGCACCTCTTAT+GGG | + | chr1_4:52667345-52667364 | Msa0169430:CDS | 40.0% | |
| CAATCCTCTTCAAAAACAGG+TGG | - | chr1_4:52667387-52667406 | None:intergenic | 40.0% | |
| GGGTTCAAAGGAACATAAGA+AGG | - | chr1_4:52667423-52667442 | None:intergenic | 40.0% | |
| GGACCAAGATAATTGCAAGA+AGG | - | chr1_4:52667453-52667472 | None:intergenic | 40.0% | |
| GCAGTAGTAAGAGAACCATT+AGG | - | chr1_4:52667498-52667517 | None:intergenic | 40.0% | |
| GCTTTGTCTACTGATAGTTC+TGG | + | chr1_4:52667516-52667535 | Msa0169430:CDS | 40.0% | |
| !! | GATAGTTCTGGTTTGTTTGG+TGG | + | chr1_4:52667528-52667547 | Msa0169430:CDS | 40.0% |
| ATTGTCCTGATCCTATTCAG+AGG | + | chr1_4:52667619-52667638 | Msa0169430:CDS | 40.0% | |
| TTGTCCTGATCCTATTCAGA+GGG | + | chr1_4:52667620-52667639 | Msa0169430:CDS | 40.0% | |
| GTTCAACTGATTGAATCGAG+TGG | - | chr1_4:52667828-52667847 | None:intergenic | 40.0% | |
| ! | CTTTTTGCAAAAGGTCATGG+TGG | + | chr1_4:52668098-52668117 | Msa0169430:intron | 40.0% |
| TATATTGGCCAGTAGCAGAA+AGG | + | chr1_4:52668249-52668268 | Msa0169430:intron | 40.0% | |
| TTGTGATTCCTTTCTGCTAC+TGG | - | chr1_4:52668260-52668279 | None:intergenic | 40.0% | |
| CTTTGCAGGGGCAAAAAAAA+AGG | - | chr1_4:52668393-52668412 | None:intergenic | 40.0% | |
| CAGTGATTAAACTGGGTCAA+AGG | - | chr1_4:52668437-52668456 | None:intergenic | 40.0% | |
| !!! | ATTTTGGTGATTTGCTGACG+TGG | - | chr1_4:52668460-52668479 | None:intergenic | 40.0% |
| ACGTCAGCAAATCACCAAAA+TGG | + | chr1_4:52668459-52668478 | Msa0169430:intron | 40.0% | |
| ACGTCAGCAAATGACCAAAA+GGG | - | chr1_4:52668754-52668773 | None:intergenic | 40.0% | |
| TGACGTGGCAGTGATTAAAT+TGG | + | chr1_4:52668768-52668787 | Msa0169430:intron | 40.0% | |
| GACGTGGCAGTGATTAAATT+GGG | + | chr1_4:52668769-52668788 | Msa0169430:intron | 40.0% | |
| !! | GCTACTAGTTGTTGATTCTC+AGG | - | chr1_4:52669016-52669035 | None:intergenic | 40.0% |
| GAGAATCAACAACTAGTAGC+TGG | + | chr1_4:52669016-52669035 | Msa0169430:CDS | 40.0% | |
| GACACCAGAAATCTCAAACT+TGG | + | chr1_4:52669060-52669079 | Msa0169430:CDS | 40.0% | |
| CGGCATGCATACTACATATT+TGG | - | chr1_4:52669351-52669370 | None:intergenic | 40.0% | |
| ACTACAGGTAGTTGTGAAAG+AGG | + | chr1_4:52669700-52669719 | Msa0169430:intron | 40.0% | |
| CGAAAATTCGAGCGCTAAGA+GGG | - | chr1_4:52666891-52666910 | None:intergenic | 45.0% | |
| TCGAAAATTCGAGCGCTAAG+AGG | - | chr1_4:52666892-52666911 | None:intergenic | 45.0% | |
| GATGTGACTGGAAGGAATGA+AGG | - | chr1_4:52667216-52667235 | None:intergenic | 45.0% | |
| !! | ACTTGCTGTGATGATGTGAC+TGG | - | chr1_4:52667228-52667247 | None:intergenic | 45.0% |
| ACAGCATGTTCATCCGTTGA+TGG | + | chr1_4:52667297-52667316 | Msa0169430:CDS | 45.0% | |
| CAGCATGTTCATCCGTTGAT+GGG | + | chr1_4:52667298-52667317 | Msa0169430:CDS | 45.0% | |
| GATAAAGGAGCTCCCATAAG+AGG | - | chr1_4:52667360-52667379 | None:intergenic | 45.0% | |
| GAAGGAGAAGAAGGGTTCAA+AGG | - | chr1_4:52667435-52667454 | None:intergenic | 45.0% | |
| TGCAATTATCTTGGTCCTGC+CGG | + | chr1_4:52667456-52667475 | Msa0169430:CDS | 45.0% | |
| AACACCCTCTGAATAGGATC+AGG | - | chr1_4:52667627-52667646 | None:intergenic | 45.0% | |
| GGGTTAAACACCCTCTGAAT+AGG | - | chr1_4:52667633-52667652 | None:intergenic | 45.0% | |
| TCAATACCTGAAGGTCAGGA+GGG | - | chr1_4:52667653-52667672 | None:intergenic | 45.0% | |
| ACAGTCAATACCTGAAGGTC+AGG | - | chr1_4:52667657-52667676 | None:intergenic | 45.0% | |
| GAACTGAGAATCGACCAGTT+TGG | + | chr1_4:52667844-52667863 | Msa0169430:intron | 45.0% | |
| GACAAAACCAACTGCCAAAC+TGG | - | chr1_4:52667861-52667880 | None:intergenic | 45.0% | |
| TGTGATTCGTCCCTGCAAAT+AGG | + | chr1_4:52668333-52668352 | Msa0169430:intron | 45.0% | |
| GTGATTCGTCCCTGCAAATA+GGG | + | chr1_4:52668334-52668353 | Msa0169430:intron | 45.0% | |
| TTAAGCGAGCCCTATTTGCA+GGG | - | chr1_4:52668867-52668886 | None:intergenic | 45.0% | |
| TTTAAGCGAGCCCTATTTGC+AGG | - | chr1_4:52668866-52668885 | None:intergenic | 45.0% | |
| GACGTGGCAGTGATTAAACT+GGG | - | chr1_4:52668444-52668463 | None:intergenic | 45.0% | |
| TGACGTGGCAGTGATTAAAC+TGG | - | chr1_4:52668445-52668464 | None:intergenic | 45.0% | |
| CACGTCAGCAAATGACCAAA+AGG | - | chr1_4:52668755-52668774 | None:intergenic | 45.0% | |
| !! | CTTTTGGTCATTTGCTGACG+TGG | + | chr1_4:52668753-52668772 | Msa0169430:intron | 45.0% |
| TTTAAGCGAGCCCTATTTGC+AGG | + | chr1_4:52668866-52668885 | Msa0169430:intron | 45.0% | |
| TTAAGCGAGCCCTATTTGCA+GGG | + | chr1_4:52668867-52668886 | Msa0169430:intron | 45.0% | |
| !! | TGAGATTTCTGGTGTCAGAG+TGG | - | chr1_4:52669056-52669075 | None:intergenic | 45.0% |
| CTTGGAAGACTCCACTTTCA+AGG | + | chr1_4:52669078-52669097 | Msa0169430:CDS | 45.0% | |
| GAAGACTCCACTTTCAAGGT+TGG | + | chr1_4:52669082-52669101 | Msa0169430:CDS | 45.0% | |
| TCTAACTCGAGGTCTGCTAT+CGG | - | chr1_4:52669385-52669404 | None:intergenic | 45.0% | |
| AACTTGGCTAATGCGCTGTT+TGG | + | chr1_4:52669555-52669574 | Msa0169430:intron | 45.0% | |
| !!! | ATTTTGAAATTTTTTTTTTA+AGG | - | chr1_4:52668524-52668543 | None:intergenic | 5.0% |
| ! | GCTGTGATGATGTGACTGGA+AGG | - | chr1_4:52667224-52667243 | None:intergenic | 50.0% |
| TTATCTTGGTCCTGCCGGTA+TGG | + | chr1_4:52667461-52667480 | Msa0169430:CDS | 50.0% | |
| ATGGCGGCATACATGCCTAA+TGG | + | chr1_4:52667480-52667499 | Msa0169430:CDS | 50.0% | |
| GTTTAACCCTCCTGACCTTC+AGG | + | chr1_4:52667644-52667663 | Msa0169430:CDS | 50.0% | |
| GTCAATACCTGAAGGTCAGG+AGG | - | chr1_4:52667654-52667673 | None:intergenic | 50.0% | |
| GAATCGACCAGTTTGGCAGT+TGG | + | chr1_4:52667851-52667870 | Msa0169430:intron | 50.0% | |
| TCACCAAAATGGCACGCGAA+AGG | + | chr1_4:52668470-52668489 | Msa0169430:intron | 50.0% | |
| CGAAAGGACGAAAATACCCC+TGG | + | chr1_4:52668486-52668505 | Msa0169430:intron | 50.0% | |
| CGAAAGGACGAAAATACCCC+TGG | - | chr1_4:52668486-52668505 | None:intergenic | 50.0% | |
| GTGATCCGTCCCTGCAAATA+GGG | - | chr1_4:52668879-52668898 | None:intergenic | 50.0% | |
| TGTGATCCGTCCCTGCAAAT+AGG | - | chr1_4:52668880-52668899 | None:intergenic | 50.0% | |
| CAACAACTAGTAGCTGGTGC+TGG | + | chr1_4:52669022-52669041 | Msa0169430:CDS | 50.0% | |
| GTATGCATGCCGCAAAACTC+TGG | + | chr1_4:52669359-52669378 | Msa0169430:intron | 50.0% | |
| ! | TGCTATCGGCCAGAGTTTTG+CGG | - | chr1_4:52669371-52669390 | None:intergenic | 50.0% |
| GATAGCAGACCTCGAGTTAG+AGG | + | chr1_4:52669384-52669403 | Msa0169430:CDS | 50.0% | |
| GCAAATCGTCCTCTAACTCG+AGG | - | chr1_4:52669396-52669415 | None:intergenic | 50.0% | |
| AGGCATGTATGCCGCCATAC+CGG | - | chr1_4:52667478-52667497 | None:intergenic | 55.0% | |
| !!! | CGTCCTTTCGCGTGCCATTT+TGG | - | chr1_4:52668476-52668495 | None:intergenic | 55.0% |
| ! | TGACCAAAAGGGCACGCGAA+AGG | - | chr1_4:52668743-52668762 | None:intergenic | 55.0% |
| TCTTGGTCCTGCCGGTATGG+CGG | + | chr1_4:52667464-52667483 | Msa0169430:CDS | 60.0% | |
| ATGTATGCCGCCATACCGGC+AGG | - | chr1_4:52667474-52667493 | None:intergenic | 60.0% | |
| ! | CGTCCTTTCGCGTGCCCTTT+TGG | + | chr1_4:52668737-52668756 | Msa0169430:intron | 60.0% |
| GCGAGCCCTATTTGCAGGGA+CGG | + | chr1_4:52668871-52668890 | Msa0169430:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 52666838 | 52669814 | 52666838 | ID=Msa0169430;Name=Msa0169430 |
| chr1_4 | mRNA | 52666838 | 52669814 | 52666838 | ID=Msa0169430-mRNA-1;Parent=Msa0169430;Name=Msa0169430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|415 |
| chr1_4 | exon | 52666838 | 52667665 | 52666838 | ID=Msa0169430-mRNA-1:exon:15635;Parent=Msa0169430-mRNA-1 |
| chr1_4 | exon | 52669004 | 52669189 | 52669004 | ID=Msa0169430-mRNA-1:exon:15636;Parent=Msa0169430-mRNA-1 |
| chr1_4 | exon | 52669360 | 52669485 | 52669360 | ID=Msa0169430-mRNA-1:exon:15637;Parent=Msa0169430-mRNA-1 |
| chr1_4 | exon | 52669707 | 52669814 | 52669707 | ID=Msa0169430-mRNA-1:exon:15638;Parent=Msa0169430-mRNA-1 |
| chr1_4 | CDS | 52666838 | 52667665 | 52666838 | ID=Msa0169430-mRNA-1:cds;Parent=Msa0169430-mRNA-1 |
| chr1_4 | CDS | 52669004 | 52669189 | 52669004 | ID=Msa0169430-mRNA-1:cds;Parent=Msa0169430-mRNA-1 |
| chr1_4 | CDS | 52669360 | 52669485 | 52669360 | ID=Msa0169430-mRNA-1:cds;Parent=Msa0169430-mRNA-1 |
| chr1_4 | CDS | 52669707 | 52669814 | 52669707 | ID=Msa0169430-mRNA-1:cds;Parent=Msa0169430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
