Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124890 | KEH42657.1 | 99.518 | 415 | 1 | 1 | 1 | 415 | 1 | 414 | 0.0 | 842 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124890 | A0A072VLD7 | 99.518 | 415 | 1 | 1 | 1 | 415 | 1 | 414 | 0.0 | 842 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0124890 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029400 | Msa0124890 | 0.900874 | 4.729745e-78 | -8.615850e-47 |
| Msa0124890 | Msa0169430 | 0.908979 | 9.443509e-82 | -8.615850e-47 |
| Msa0124890 | Msa1002410 | 0.865628 | 5.143505e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124890 | MtrunA17_Chr1g0186171 | 99.518 | 415 | 1 | 1 | 1 | 415 | 1 | 414 | 0.0 | 842 |
| Msa0124890 | MtrunA17_Chr1g0168401 | 62.818 | 433 | 125 | 12 | 1 | 415 | 1 | 415 | 2.74e-152 | 437 |
| Msa0124890 | MtrunA17_Chr8g0387241 | 35.545 | 211 | 104 | 7 | 209 | 409 | 133 | 321 | 1.07e-23 | 100 |
| Msa0124890 | MtrunA17_Chr2g0311591 | 54.545 | 77 | 35 | 0 | 298 | 374 | 151 | 227 | 2.69e-21 | 92.8 |
| Msa0124890 | MtrunA17_Chr5g0397361 | 56.944 | 72 | 31 | 0 | 289 | 360 | 145 | 216 | 6.13e-20 | 88.6 |
| Msa0124890 | MtrunA17_Chr2g0327621 | 45.918 | 98 | 51 | 1 | 265 | 362 | 105 | 200 | 2.14e-19 | 87.0 |
| Msa0124890 | MtrunA17_Chr4g0030421 | 57.377 | 61 | 26 | 0 | 302 | 362 | 20 | 80 | 2.91e-18 | 80.9 |
| Msa0124890 | MtrunA17_Chr1g0147111 | 36.296 | 135 | 69 | 4 | 229 | 362 | 159 | 277 | 1.25e-16 | 79.7 |
| Msa0124890 | MtrunA17_Chr3g0126721 | 65.306 | 49 | 17 | 0 | 313 | 361 | 226 | 274 | 5.70e-15 | 74.7 |
| Msa0124890 | MtrunA17_Chr3g0136701 | 42.308 | 78 | 39 | 1 | 288 | 365 | 209 | 280 | 3.10e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124890 | AT1G04500.3 | 51.069 | 421 | 147 | 15 | 9 | 415 | 2 | 377 | 1.44e-118 | 350 |
| Msa0124890 | AT1G04500.4 | 51.069 | 421 | 147 | 15 | 9 | 415 | 11 | 386 | 6.27e-118 | 349 |
| Msa0124890 | AT1G04500.1 | 51.069 | 421 | 147 | 15 | 9 | 415 | 11 | 386 | 6.27e-118 | 349 |
| Msa0124890 | AT2G33350.2 | 49.531 | 426 | 159 | 16 | 13 | 415 | 17 | 409 | 1.34e-101 | 308 |
| Msa0124890 | AT2G33350.4 | 49.531 | 426 | 159 | 16 | 13 | 415 | 6 | 398 | 2.01e-101 | 307 |
| Msa0124890 | AT2G33350.5 | 49.531 | 426 | 159 | 16 | 13 | 415 | 26 | 418 | 5.23e-101 | 307 |
| Msa0124890 | AT2G33350.1 | 48.946 | 427 | 161 | 16 | 13 | 415 | 17 | 410 | 7.42e-100 | 303 |
| Msa0124890 | AT1G04500.2 | 45.376 | 346 | 126 | 16 | 9 | 338 | 11 | 309 | 8.39e-70 | 225 |
| Msa0124890 | AT2G33350.3 | 43.678 | 348 | 141 | 15 | 13 | 338 | 17 | 331 | 9.61e-60 | 198 |
| Msa0124890 | AT5G41380.1 | 56.250 | 96 | 33 | 3 | 266 | 361 | 173 | 259 | 1.11e-23 | 100 |
| Msa0124890 | AT1G63820.1 | 40.833 | 120 | 69 | 1 | 264 | 381 | 137 | 256 | 2.44e-23 | 99.8 |
| Msa0124890 | AT3G12890.1 | 52.809 | 89 | 36 | 1 | 308 | 396 | 130 | 212 | 4.21e-22 | 95.1 |
| Msa0124890 | AT4G27900.1 | 38.144 | 97 | 45 | 2 | 266 | 362 | 178 | 259 | 4.92e-16 | 78.2 |
| Msa0124890 | AT4G27900.2 | 38.144 | 97 | 45 | 2 | 266 | 362 | 178 | 259 | 4.92e-16 | 78.2 |
| Msa0124890 | AT5G53420.2 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.12e-15 | 73.9 |
| Msa0124890 | AT5G53420.5 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.12e-15 | 73.9 |
| Msa0124890 | AT5G53420.4 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.12e-15 | 73.9 |
| Msa0124890 | AT5G59990.1 | 39.850 | 133 | 63 | 3 | 265 | 397 | 120 | 235 | 3.41e-15 | 75.1 |
| Msa0124890 | AT5G53420.1 | 65.957 | 47 | 16 | 0 | 315 | 361 | 216 | 262 | 6.67e-15 | 74.7 |
| Msa0124890 | AT5G24930.1 | 40.000 | 70 | 42 | 0 | 297 | 366 | 275 | 344 | 9.97e-11 | 63.5 |
Find 78 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCCAAGTTTGAGATTTC+TGG | 0.139924 | 1_3:+52754980 | None:intergenic |
| TGATTCAGTTGCACCTCTTA+TGG | 0.196419 | 1_3:-52756106 | Msa0124890:CDS |
| TTTGCAAAGAATGATGATTT+TGG | 0.203362 | 1_3:-52754633 | Msa0124890:CDS |
| TCAGAATTCTGCAAAGCTTC+TGG | 0.225403 | 1_3:+52756516 | None:intergenic |
| TCCTGTAAACATTGATATAA+AGG | 0.285030 | 1_3:+52756597 | None:intergenic |
| GTTTAACCCTCCTGACCTTC+AGG | 0.295741 | 1_3:-52755806 | Msa0124890:intron |
| TCTCCTTCTTGCAATTATCT+TGG | 0.304557 | 1_3:-52756003 | Msa0124890:CDS |
| TGATAGATTATTGCTATTGT+TGG | 0.307253 | 1_3:+52756341 | None:intergenic |
| TGGTTTGTTTGGTGGAAATA+TGG | 0.310217 | 1_3:-52755914 | Msa0124890:CDS |
| TCCTTTATATCAATGTTTAC+AGG | 0.317206 | 1_3:-52756598 | Msa0124890:CDS |
| TCGAAAATTCGAGCGCTAAG+AGG | 0.329398 | 1_3:+52756561 | None:intergenic |
| ACTGATAGTTCTGGTTTGTT+TGG | 0.336862 | 1_3:-52755925 | Msa0124890:CDS |
| TAATATATTTGTTGCATATG+AGG | 0.345362 | 1_3:+52756455 | None:intergenic |
| GATTCAGTTGCACCTCTTAT+GGG | 0.348322 | 1_3:-52756105 | Msa0124890:CDS |
| GCTTTGTCTACTGATAGTTC+TGG | 0.348575 | 1_3:-52755934 | Msa0124890:CDS |
| AAACTTCAGCAAGAAAATTA+AGG | 0.349765 | 1_3:-52754876 | Msa0124890:intron |
| CTTGGAAGACTCCACTTTCA+AGG | 0.364962 | 1_3:-52754966 | Msa0124890:CDS |
| AAAACAGGTGGTAATGATAA+AGG | 0.370742 | 1_3:+52756078 | None:intergenic |
| CTTGATTATCAAGGAGATAA+TGG | 0.371169 | 1_3:-52755862 | Msa0124890:CDS |
| AGAGGTGCAACTGAATCATT+TGG | 0.378768 | 1_3:+52756111 | None:intergenic |
| GTTGATATTGTTGTTTGTGC+TGG | 0.381949 | 1_3:+52756374 | None:intergenic |
| GCTACTAGTTGTTGATTCTC+AGG | 0.396916 | 1_3:+52755031 | None:intergenic |
| CAGAATTCTGCAAAGCTTCT+GGG | 0.401559 | 1_3:+52756517 | None:intergenic |
| GGGTTAAACACCCTCTGAAT+AGG | 0.414662 | 1_3:+52755820 | None:intergenic |
| AATGGAATAGTTGCATTTGA+AGG | 0.424110 | 1_3:+52754247 | None:intergenic |
| TGCAATTATCTTGGTCCTGC+CGG | 0.431147 | 1_3:-52755994 | Msa0124890:CDS |
| GCAACTATTCCATTCAATCA+TGG | 0.437657 | 1_3:-52754238 | Msa0124890:CDS |
| GATAGTTCTGGTTTGTTTGG+TGG | 0.449481 | 1_3:-52755922 | Msa0124890:CDS |
| TAATTGCAAGAAGGAGAAGA+AGG | 0.453970 | 1_3:+52756009 | None:intergenic |
| ATATTGTTGTTTGTGCTGGT+TGG | 0.455798 | 1_3:+52756378 | None:intergenic |
| ACAGCATGTTCATCCGTTGA+TGG | 0.462537 | 1_3:-52756153 | Msa0124890:CDS |
| TTATCTTGGTCCTGCCGGTA+TGG | 0.463392 | 1_3:-52755989 | Msa0124890:CDS |
| TGTGAAAGAGGAAGATGATA+TGG | 0.463481 | 1_3:-52754312 | Msa0124890:CDS |
| GACACCAGAAATCTCAAACT+TGG | 0.464943 | 1_3:-52754984 | Msa0124890:CDS |
| CGAAAATTCGAGCGCTAAGA+GGG | 0.464964 | 1_3:+52756562 | None:intergenic |
| TGAAGAAGAAGATGAAGAAG+AGG | 0.466581 | 1_3:-52754580 | Msa0124890:intron |
| GAAGACTCCACTTTCAAGGT+TGG | 0.473074 | 1_3:-52754962 | Msa0124890:CDS |
| ACAGTCAATACCTGAAGGTC+AGG | 0.480367 | 1_3:+52755796 | None:intergenic |
| GATAGCAGACCTCGAGTTAG+AGG | 0.482620 | 1_3:-52754660 | Msa0124890:CDS |
| GAATCAAATCCATGATTGAA+TGG | 0.483820 | 1_3:+52754229 | None:intergenic |
| CAGCATGTTCATCCGTTGAT+GGG | 0.484565 | 1_3:-52756152 | Msa0124890:CDS |
| GCAGTAGTAAGAGAACCATT+AGG | 0.493364 | 1_3:+52755955 | None:intergenic |
| ATGGCGGCATACATGCCTAA+TGG | 0.504835 | 1_3:-52755970 | Msa0124890:CDS |
| GTATGCATGCCGCAAAACTC+TGG | 0.507026 | 1_3:-52754685 | Msa0124890:CDS |
| GATAAAGGAGCTCCCATAAG+AGG | 0.508957 | 1_3:+52756093 | None:intergenic |
| TTGTCCTGATCCTATTCAGA+GGG | 0.518686 | 1_3:-52755830 | Msa0124890:CDS |
| AACACCCTCTGAATAGGATC+AGG | 0.520235 | 1_3:+52755826 | None:intergenic |
| AATGAAGGAACATTGAAAGA+TGG | 0.520786 | 1_3:+52756252 | None:intergenic |
| ATGTATGCCGCCATACCGGC+AGG | 0.531779 | 1_3:+52755979 | None:intergenic |
| ACTACAGGTAGTTGTGAAAG+AGG | 0.540728 | 1_3:-52754324 | Msa0124890:intron |
| GAGAATCAACAACTAGTAGC+TGG | 0.540899 | 1_3:-52755028 | Msa0124890:CDS |
| ACACAAGAACTTGATTATCA+AGG | 0.541577 | 1_3:-52755871 | Msa0124890:CDS |
| GAAGGAGAAGAAGGGTTCAA+AGG | 0.541723 | 1_3:+52756018 | None:intergenic |
| GAAAACTTTCTGTTGAACAA+AGG | 0.552214 | 1_3:-52754940 | Msa0124890:CDS |
| GGGTTCAAAGGAACATAAGA+AGG | 0.558201 | 1_3:+52756030 | None:intergenic |
| GATATATTTGCTCATATCAG+TGG | 0.567084 | 1_3:-52754278 | Msa0124890:CDS |
| AGGCATGTATGCCGCCATAC+CGG | 0.574531 | 1_3:+52755975 | None:intergenic |
| TCTAACTCGAGGTCTGCTAT+CGG | 0.575030 | 1_3:+52754662 | None:intergenic |
| CAACAACTAGTAGCTGGTGC+TGG | 0.575480 | 1_3:-52755022 | Msa0124890:CDS |
| GATGTGACTGGAAGGAATGA+AGG | 0.578846 | 1_3:+52756237 | None:intergenic |
| AATTGCAAGAAGGAGAAGAA+GGG | 0.582488 | 1_3:+52756010 | None:intergenic |
| ACTTGCTGTGATGATGTGAC+TGG | 0.583948 | 1_3:+52756225 | None:intergenic |
| TCTTGGTCCTGCCGGTATGG+CGG | 0.591145 | 1_3:-52755986 | Msa0124890:CDS |
| AGAAGCTTTGCAGAATTCTG+AGG | 0.591368 | 1_3:-52756514 | Msa0124890:CDS |
| GTCAATACCTGAAGGTCAGG+AGG | 0.601952 | 1_3:+52755799 | None:intergenic |
| ATTGTCCTGATCCTATTCAG+AGG | 0.615011 | 1_3:-52755831 | Msa0124890:CDS |
| TGATAGTGAGAAATCTATTG+AGG | 0.622836 | 1_3:+52756275 | None:intergenic |
| GGACCAAGATAATTGCAAGA+AGG | 0.631874 | 1_3:+52756000 | None:intergenic |
| GATACAAATAGAACTGCTAG+TGG | 0.632275 | 1_3:-52754609 | Msa0124890:CDS |
| GCAAATCGTCCTCTAACTCG+AGG | 0.634840 | 1_3:+52754651 | None:intergenic |
| GATATGAGCAAATATATCTG+AGG | 0.650959 | 1_3:+52754283 | None:intergenic |
| TCAATACCTGAAGGTCAGGA+GGG | 0.652626 | 1_3:+52755800 | None:intergenic |
| GCTGTGATGATGTGACTGGA+AGG | 0.653513 | 1_3:+52756229 | None:intergenic |
| GTAAGTTGAACATGATGATG+AGG | 0.662251 | 1_3:+52756174 | None:intergenic |
| ATACTGCGAAAACCCATCAA+CGG | 0.666515 | 1_3:+52756140 | None:intergenic |
| TGAGATTTCTGGTGTCAGAG+TGG | 0.672060 | 1_3:+52754991 | None:intergenic |
| TAAAGGAAATGTAAACAACA+TGG | 0.694278 | 1_3:+52756614 | None:intergenic |
| TAGCAATAGCAATAACACAG+TGG | 0.772848 | 1_3:-52756409 | Msa0124890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTACTTTTTCATT+TGG | - | chr1_3:52755343-52755362 | Msa0124890:intron | 10.0% |
| !! | AAAATAAATGTTTCAAAAAT+CGG | + | chr1_3:52755450-52755469 | None:intergenic | 10.0% |
| !!! | ATATTTTTTACTTTTTCATT+TGG | - | chr1_3:52755343-52755362 | Msa0124890:intron | 10.0% |
| !! | AAAATAAATGTTTCAAAAAT+CGG | + | chr1_3:52755450-52755469 | None:intergenic | 10.0% |
| !! | TAAAAAATAACTATGGAAAA+TGG | + | chr1_3:52755142-52755161 | None:intergenic | 15.0% |
| !! | TCATTCATAAAAAATAACTA+TGG | + | chr1_3:52755149-52755168 | None:intergenic | 15.0% |
| !!! | ATAATGCTAATTTATTTTTC+AGG | - | chr1_3:52755782-52755801 | Msa0124890:intron | 15.0% |
| !! | TATCTACTTATTTATTTGAT+TGG | - | chr1_3:52756462-52756481 | Msa0124890:CDS | 15.0% |
| !! | TAAAAAATAACTATGGAAAA+TGG | + | chr1_3:52755142-52755161 | None:intergenic | 15.0% |
| !! | TCATTCATAAAAAATAACTA+TGG | + | chr1_3:52755149-52755168 | None:intergenic | 15.0% |
| !!! | ATAATGCTAATTTATTTTTC+AGG | - | chr1_3:52755782-52755801 | Msa0124890:intron | 15.0% |
| !! | TATCTACTTATTTATTTGAT+TGG | - | chr1_3:52756462-52756481 | Msa0124890:CDS | 15.0% |
| !!! | TAATATATTTGTTGCATATG+AGG | + | chr1_3:52754392-52754411 | None:intergenic | 20.0% |
| !! | AATATACAAAAAATGAGAAC+AGG | + | chr1_3:52755328-52755347 | None:intergenic | 20.0% |
| !!! | TTATTTTAAAGCTTTGTAAG+AGG | - | chr1_3:52755463-52755482 | Msa0124890:intron | 20.0% |
| !!! | ATGCTACTTTTTTTTTTTGT+AGG | + | chr1_3:52755623-52755642 | None:intergenic | 20.0% |
| !! | AAAAAAGTAGCATAGTATAT+TGG | - | chr1_3:52755630-52755649 | Msa0124890:intron | 20.0% |
| !!! | CTTTTTTCCAATAAAATTGA+TGG | - | chr1_3:52755676-52755695 | Msa0124890:intron | 20.0% |
| !!! | TGTTTTACCATCAATTTTAT+TGG | + | chr1_3:52755686-52755705 | None:intergenic | 20.0% |
| !! | TTACAAGTTCATATTTAACT+TGG | - | chr1_3:52756339-52756358 | Msa0124890:CDS | 20.0% |
| !!! | AATTAAGTTGTTTATCCAAA+CGG | + | chr1_3:52756373-52756392 | None:intergenic | 20.0% |
| !!! | TAATATATTTGTTGCATATG+AGG | + | chr1_3:52754392-52754411 | None:intergenic | 20.0% |
| !! | AATATACAAAAAATGAGAAC+AGG | + | chr1_3:52755328-52755347 | None:intergenic | 20.0% |
| !!! | TTATTTTAAAGCTTTGTAAG+AGG | - | chr1_3:52755463-52755482 | Msa0124890:intron | 20.0% |
| !!! | ATGCTACTTTTTTTTTTTGT+AGG | + | chr1_3:52755623-52755642 | None:intergenic | 20.0% |
| !! | AAAAAAGTAGCATAGTATAT+TGG | - | chr1_3:52755630-52755649 | Msa0124890:intron | 20.0% |
| !!! | CTTTTTTCCAATAAAATTGA+TGG | - | chr1_3:52755676-52755695 | Msa0124890:intron | 20.0% |
| !!! | TGTTTTACCATCAATTTTAT+TGG | + | chr1_3:52755686-52755705 | None:intergenic | 20.0% |
| !! | TTACAAGTTCATATTTAACT+TGG | - | chr1_3:52756339-52756358 | Msa0124890:CDS | 20.0% |
| !!! | AATTAAGTTGTTTATCCAAA+CGG | + | chr1_3:52756373-52756392 | None:intergenic | 20.0% |
| ! | TCCTTTATATCAATGTTTAC+AGG | - | chr1_3:52754246-52754265 | Msa0124890:CDS | 25.0% |
| ! | TCCTGTAAACATTGATATAA+AGG | + | chr1_3:52754250-52754269 | None:intergenic | 25.0% |
| !! | TGATAGATTATTGCTATTGT+TGG | + | chr1_3:52754506-52754525 | None:intergenic | 25.0% |
| ! | TTAGTCATCCAATTCAATTA+TGG | - | chr1_3:52755369-52755388 | Msa0124890:intron | 25.0% |
| ! | AGTTCAAACCATAATTGAAT+TGG | + | chr1_3:52755380-52755399 | None:intergenic | 25.0% |
| ! | AAATGTTTCAAAAATCGGAT+TGG | + | chr1_3:52755445-52755464 | None:intergenic | 25.0% |
| !! | AGGTAATTTCTTTTTGCAAA+AGG | - | chr1_3:52755483-52755502 | Msa0124890:intron | 25.0% |
| ! | ATAAACTGTTTACATATCTG+TGG | + | chr1_3:52755519-52755538 | None:intergenic | 25.0% |
| ! | ATATTGGCATATATTCTATG+CGG | + | chr1_3:52755543-52755562 | None:intergenic | 25.0% |
| ! | AATGTCCTATTTCATATGAA+TGG | - | chr1_3:52755717-52755736 | Msa0124890:intron | 25.0% |
| ! | AAGAACCATTCATATGAAAT+AGG | + | chr1_3:52755725-52755744 | None:intergenic | 25.0% |
| ! | AAACTTCAGCAAGAAAATTA+AGG | - | chr1_3:52755968-52755987 | Msa0124890:CDS | 25.0% |
| ! | AAGTAACATGATAACTGATA+AGG | + | chr1_3:52756043-52756062 | None:intergenic | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | - | chr1_3:52756211-52756230 | Msa0124890:CDS | 25.0% |
| ! | TCCTTTATATCAATGTTTAC+AGG | - | chr1_3:52754246-52754265 | Msa0124890:CDS | 25.0% |
| ! | TCCTGTAAACATTGATATAA+AGG | + | chr1_3:52754250-52754269 | None:intergenic | 25.0% |
| !! | TGATAGATTATTGCTATTGT+TGG | + | chr1_3:52754506-52754525 | None:intergenic | 25.0% |
| ! | TTAGTCATCCAATTCAATTA+TGG | - | chr1_3:52755369-52755388 | Msa0124890:intron | 25.0% |
| ! | AGTTCAAACCATAATTGAAT+TGG | + | chr1_3:52755380-52755399 | None:intergenic | 25.0% |
| ! | AAATGTTTCAAAAATCGGAT+TGG | + | chr1_3:52755445-52755464 | None:intergenic | 25.0% |
| !! | AGGTAATTTCTTTTTGCAAA+AGG | - | chr1_3:52755483-52755502 | Msa0124890:intron | 25.0% |
| ! | ATAAACTGTTTACATATCTG+TGG | + | chr1_3:52755519-52755538 | None:intergenic | 25.0% |
| ! | ATATTGGCATATATTCTATG+CGG | + | chr1_3:52755543-52755562 | None:intergenic | 25.0% |
| ! | AATGTCCTATTTCATATGAA+TGG | - | chr1_3:52755717-52755736 | Msa0124890:intron | 25.0% |
| ! | AAGAACCATTCATATGAAAT+AGG | + | chr1_3:52755725-52755744 | None:intergenic | 25.0% |
| ! | AAACTTCAGCAAGAAAATTA+AGG | - | chr1_3:52755968-52755987 | Msa0124890:CDS | 25.0% |
| ! | AAGTAACATGATAACTGATA+AGG | + | chr1_3:52756043-52756062 | None:intergenic | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | - | chr1_3:52756211-52756230 | Msa0124890:CDS | 25.0% |
| ! | TGATAGTGAGAAATCTATTG+AGG | + | chr1_3:52754572-52754591 | None:intergenic | 30.0% |
| AATGAAGGAACATTGAAAGA+TGG | + | chr1_3:52754595-52754614 | None:intergenic | 30.0% | |
| ! | AAAACAGGTGGTAATGATAA+AGG | + | chr1_3:52754769-52754788 | None:intergenic | 30.0% |
| ! | TTTGGTGGAAATATGGTTTT+TGG | - | chr1_3:52754937-52754956 | Msa0124890:CDS | 30.0% |
| ACACAAGAACTTGATTATCA+AGG | - | chr1_3:52754973-52754992 | Msa0124890:CDS | 30.0% | |
| CTTGATTATCAAGGAGATAA+TGG | - | chr1_3:52754982-52755001 | Msa0124890:CDS | 30.0% | |
| !!! | CAAGCGATGTTTTTTAAAAC+TGG | - | chr1_3:52755190-52755209 | Msa0124890:intron | 30.0% |
| TACAAAAAATGAGAACAGGT+TGG | + | chr1_3:52755324-52755343 | None:intergenic | 30.0% | |
| ACTTTAGGTCATTGTTCAAT+TGG | + | chr1_3:52755410-52755429 | None:intergenic | 30.0% | |
| ! | TTTCTTTTTGCAAAAGGTCA+TGG | - | chr1_3:52755489-52755508 | Msa0124890:intron | 30.0% |
| TGAGACTGTGCAATTATAAA+GGG | + | chr1_3:52755600-52755619 | None:intergenic | 30.0% | |
| TTATCTTCAGATTCAGATTC+TGG | + | chr1_3:52755763-52755782 | None:intergenic | 30.0% | |
| GAAAACTTTCTGTTGAACAA+AGG | - | chr1_3:52755904-52755923 | Msa0124890:CDS | 30.0% | |
| TATGAACTTGTAAAGTGTGT+TGG | + | chr1_3:52756332-52756351 | None:intergenic | 30.0% | |
| ! | CATTTGATAACTGTAACTAC+AGG | - | chr1_3:52756505-52756524 | Msa0124890:CDS | 30.0% |
| GATATGAGCAAATATATCTG+AGG | + | chr1_3:52756564-52756583 | None:intergenic | 30.0% | |
| GATATATTTGCTCATATCAG+TGG | - | chr1_3:52756566-52756585 | Msa0124890:CDS | 30.0% | |
| AATGGAATAGTTGCATTTGA+AGG | + | chr1_3:52756600-52756619 | None:intergenic | 30.0% | |
| ! | TGATAGTGAGAAATCTATTG+AGG | + | chr1_3:52754572-52754591 | None:intergenic | 30.0% |
| AATGAAGGAACATTGAAAGA+TGG | + | chr1_3:52754595-52754614 | None:intergenic | 30.0% | |
| ! | AAAACAGGTGGTAATGATAA+AGG | + | chr1_3:52754769-52754788 | None:intergenic | 30.0% |
| ! | TTTGGTGGAAATATGGTTTT+TGG | - | chr1_3:52754937-52754956 | Msa0124890:CDS | 30.0% |
| ACACAAGAACTTGATTATCA+AGG | - | chr1_3:52754973-52754992 | Msa0124890:CDS | 30.0% | |
| CTTGATTATCAAGGAGATAA+TGG | - | chr1_3:52754982-52755001 | Msa0124890:CDS | 30.0% | |
| !!! | CAAGCGATGTTTTTTAAAAC+TGG | - | chr1_3:52755190-52755209 | Msa0124890:intron | 30.0% |
| TACAAAAAATGAGAACAGGT+TGG | + | chr1_3:52755324-52755343 | None:intergenic | 30.0% | |
| ACTTTAGGTCATTGTTCAAT+TGG | + | chr1_3:52755410-52755429 | None:intergenic | 30.0% | |
| ! | TTTCTTTTTGCAAAAGGTCA+TGG | - | chr1_3:52755489-52755508 | Msa0124890:intron | 30.0% |
| TGAGACTGTGCAATTATAAA+GGG | + | chr1_3:52755600-52755619 | None:intergenic | 30.0% | |
| TTATCTTCAGATTCAGATTC+TGG | + | chr1_3:52755763-52755782 | None:intergenic | 30.0% | |
| GAAAACTTTCTGTTGAACAA+AGG | - | chr1_3:52755904-52755923 | Msa0124890:CDS | 30.0% | |
| TATGAACTTGTAAAGTGTGT+TGG | + | chr1_3:52756332-52756351 | None:intergenic | 30.0% | |
| ! | CATTTGATAACTGTAACTAC+AGG | - | chr1_3:52756505-52756524 | Msa0124890:CDS | 30.0% |
| GATATGAGCAAATATATCTG+AGG | + | chr1_3:52756564-52756583 | None:intergenic | 30.0% | |
| GATATATTTGCTCATATCAG+TGG | - | chr1_3:52756566-52756585 | Msa0124890:CDS | 30.0% | |
| AATGGAATAGTTGCATTTGA+AGG | + | chr1_3:52756600-52756619 | None:intergenic | 30.0% | |
| TAGCAATAGCAATAACACAG+TGG | - | chr1_3:52754435-52754454 | Msa0124890:intron | 35.0% | |
| !! | ATATTGTTGTTTGTGCTGGT+TGG | + | chr1_3:52754469-52754488 | None:intergenic | 35.0% |
| !! | GTTGATATTGTTGTTTGTGC+TGG | + | chr1_3:52754473-52754492 | None:intergenic | 35.0% |
| ! | GTAAGTTGAACATGATGATG+AGG | + | chr1_3:52754673-52754692 | None:intergenic | 35.0% |
| !!! | ATTACCACCTGTTTTTGAAG+AGG | - | chr1_3:52754774-52754793 | Msa0124890:intron | 35.0% |
| ATGCAATCCTCTTCAAAAAC+AGG | + | chr1_3:52754784-52754803 | None:intergenic | 35.0% | |
| AATTGCAAGAAGGAGAAGAA+GGG | + | chr1_3:52754837-52754856 | None:intergenic | 35.0% | |
| TAATTGCAAGAAGGAGAAGA+AGG | + | chr1_3:52754838-52754857 | None:intergenic | 35.0% | |
| TCTCCTTCTTGCAATTATCT+TGG | - | chr1_3:52754841-52754860 | Msa0124890:intron | 35.0% | |
| !! | ACTGATAGTTCTGGTTTGTT+TGG | - | chr1_3:52754919-52754938 | Msa0124890:CDS | 35.0% |
| !! | TGGTTTGTTTGGTGGAAATA+TGG | - | chr1_3:52754930-52754949 | Msa0124890:CDS | 35.0% |
| TTGAAACAGTCAATACCTGA+AGG | + | chr1_3:52755056-52755075 | None:intergenic | 35.0% | |
| GATTGAACGTAATTGAGTCA+CGG | - | chr1_3:52755293-52755312 | Msa0124890:intron | 35.0% | |
| TGGAGATCTTGTGAAACTTT+AGG | + | chr1_3:52755425-52755444 | None:intergenic | 35.0% | |
| !!! | GCTACTGTTTTGATGGATAT+TGG | + | chr1_3:52755559-52755578 | None:intergenic | 35.0% |
| !! | ATTGCTAGCTACTGTTTTGA+TGG | + | chr1_3:52755566-52755585 | None:intergenic | 35.0% |
| GTGAGACTGTGCAATTATAA+AGG | + | chr1_3:52755601-52755620 | None:intergenic | 35.0% | |
| ! | TCAGATTCAGATTCTGGAAA+GGG | + | chr1_3:52755757-52755776 | None:intergenic | 35.0% |
| ! | TTCAGATTCAGATTCTGGAA+AGG | + | chr1_3:52755758-52755777 | None:intergenic | 35.0% |
| ! | TCTTCCAAGTTTGAGATTTC+TGG | + | chr1_3:52755867-52755886 | None:intergenic | 35.0% |
| ! | AAGTTTTCCAACCTTGAAAG+TGG | + | chr1_3:52755892-52755911 | None:intergenic | 35.0% |
| CAGTTCTGTTTGATTATGCA+TGG | + | chr1_3:52756016-52756035 | None:intergenic | 35.0% | |
| ATATGCAGTAAGAAGAGAAG+TGG | + | chr1_3:52756101-52756120 | None:intergenic | 35.0% | |
| GATACAAATAGAACTGCTAG+TGG | - | chr1_3:52756235-52756254 | Msa0124890:CDS | 35.0% | |
| TGAAGAAGAAGATGAAGAAG+AGG | - | chr1_3:52756264-52756283 | Msa0124890:CDS | 35.0% | |
| TGTGAAAGAGGAAGATGATA+TGG | - | chr1_3:52756532-52756551 | Msa0124890:CDS | 35.0% | |
| GCAACTATTCCATTCAATCA+TGG | - | chr1_3:52756606-52756625 | Msa0124890:CDS | 35.0% | |
| TAGCAATAGCAATAACACAG+TGG | - | chr1_3:52754435-52754454 | Msa0124890:intron | 35.0% | |
| !! | ATATTGTTGTTTGTGCTGGT+TGG | + | chr1_3:52754469-52754488 | None:intergenic | 35.0% |
| !! | GTTGATATTGTTGTTTGTGC+TGG | + | chr1_3:52754473-52754492 | None:intergenic | 35.0% |
| ! | GTAAGTTGAACATGATGATG+AGG | + | chr1_3:52754673-52754692 | None:intergenic | 35.0% |
| !!! | ATTACCACCTGTTTTTGAAG+AGG | - | chr1_3:52754774-52754793 | Msa0124890:intron | 35.0% |
| ATGCAATCCTCTTCAAAAAC+AGG | + | chr1_3:52754784-52754803 | None:intergenic | 35.0% | |
| AATTGCAAGAAGGAGAAGAA+GGG | + | chr1_3:52754837-52754856 | None:intergenic | 35.0% | |
| TAATTGCAAGAAGGAGAAGA+AGG | + | chr1_3:52754838-52754857 | None:intergenic | 35.0% | |
| TCTCCTTCTTGCAATTATCT+TGG | - | chr1_3:52754841-52754860 | Msa0124890:intron | 35.0% | |
| !! | ACTGATAGTTCTGGTTTGTT+TGG | - | chr1_3:52754919-52754938 | Msa0124890:CDS | 35.0% |
| !! | TGGTTTGTTTGGTGGAAATA+TGG | - | chr1_3:52754930-52754949 | Msa0124890:CDS | 35.0% |
| TTGAAACAGTCAATACCTGA+AGG | + | chr1_3:52755056-52755075 | None:intergenic | 35.0% | |
| GATTGAACGTAATTGAGTCA+CGG | - | chr1_3:52755293-52755312 | Msa0124890:intron | 35.0% | |
| TGGAGATCTTGTGAAACTTT+AGG | + | chr1_3:52755425-52755444 | None:intergenic | 35.0% | |
| !!! | GCTACTGTTTTGATGGATAT+TGG | + | chr1_3:52755559-52755578 | None:intergenic | 35.0% |
| !! | ATTGCTAGCTACTGTTTTGA+TGG | + | chr1_3:52755566-52755585 | None:intergenic | 35.0% |
| GTGAGACTGTGCAATTATAA+AGG | + | chr1_3:52755601-52755620 | None:intergenic | 35.0% | |
| ! | TCAGATTCAGATTCTGGAAA+GGG | + | chr1_3:52755757-52755776 | None:intergenic | 35.0% |
| ! | TTCAGATTCAGATTCTGGAA+AGG | + | chr1_3:52755758-52755777 | None:intergenic | 35.0% |
| ! | TCTTCCAAGTTTGAGATTTC+TGG | + | chr1_3:52755867-52755886 | None:intergenic | 35.0% |
| ! | AAGTTTTCCAACCTTGAAAG+TGG | + | chr1_3:52755892-52755911 | None:intergenic | 35.0% |
| CAGTTCTGTTTGATTATGCA+TGG | + | chr1_3:52756016-52756035 | None:intergenic | 35.0% | |
| ATATGCAGTAAGAAGAGAAG+TGG | + | chr1_3:52756101-52756120 | None:intergenic | 35.0% | |
| GATACAAATAGAACTGCTAG+TGG | - | chr1_3:52756235-52756254 | Msa0124890:CDS | 35.0% | |
| TGAAGAAGAAGATGAAGAAG+AGG | - | chr1_3:52756264-52756283 | Msa0124890:CDS | 35.0% | |
| TGTGAAAGAGGAAGATGATA+TGG | - | chr1_3:52756532-52756551 | Msa0124890:CDS | 35.0% | |
| GCAACTATTCCATTCAATCA+TGG | - | chr1_3:52756606-52756625 | Msa0124890:CDS | 35.0% | |
| CAGAATTCTGCAAAGCTTCT+GGG | + | chr1_3:52754330-52754349 | None:intergenic | 40.0% | |
| TCAGAATTCTGCAAAGCTTC+TGG | + | chr1_3:52754331-52754350 | None:intergenic | 40.0% | |
| AGAAGCTTTGCAGAATTCTG+AGG | - | chr1_3:52754330-52754349 | Msa0124890:intron | 40.0% | |
| ATACTGCGAAAACCCATCAA+CGG | + | chr1_3:52754707-52754726 | None:intergenic | 40.0% | |
| ! | AGAGGTGCAACTGAATCATT+TGG | + | chr1_3:52754736-52754755 | None:intergenic | 40.0% |
| TGATTCAGTTGCACCTCTTA+TGG | - | chr1_3:52754738-52754757 | Msa0124890:intron | 40.0% | |
| GATTCAGTTGCACCTCTTAT+GGG | - | chr1_3:52754739-52754758 | Msa0124890:intron | 40.0% | |
| CAATCCTCTTCAAAAACAGG+TGG | + | chr1_3:52754781-52754800 | None:intergenic | 40.0% | |
| GGGTTCAAAGGAACATAAGA+AGG | + | chr1_3:52754817-52754836 | None:intergenic | 40.0% | |
| GGACCAAGATAATTGCAAGA+AGG | + | chr1_3:52754847-52754866 | None:intergenic | 40.0% | |
| GCAGTAGTAAGAGAACCATT+AGG | + | chr1_3:52754892-52754911 | None:intergenic | 40.0% | |
| GCTTTGTCTACTGATAGTTC+TGG | - | chr1_3:52754910-52754929 | Msa0124890:CDS | 40.0% | |
| !! | GATAGTTCTGGTTTGTTTGG+TGG | - | chr1_3:52754922-52754941 | Msa0124890:CDS | 40.0% |
| ATTGTCCTGATCCTATTCAG+AGG | - | chr1_3:52755013-52755032 | Msa0124890:CDS | 40.0% | |
| TTGTCCTGATCCTATTCAGA+GGG | - | chr1_3:52755014-52755033 | Msa0124890:CDS | 40.0% | |
| GTTCAACTGATTGAATCGAG+TGG | + | chr1_3:52755222-52755241 | None:intergenic | 40.0% | |
| ! | CTTTTTGCAAAAGGTCATGG+TGG | - | chr1_3:52755492-52755511 | Msa0124890:intron | 40.0% |
| TATATTGGCCAGTAGCAGAA+AGG | - | chr1_3:52755645-52755664 | Msa0124890:intron | 40.0% | |
| TTGTGATTCCTTTCTGCTAC+TGG | + | chr1_3:52755656-52755675 | None:intergenic | 40.0% | |
| !! | GCTACTAGTTGTTGATTCTC+AGG | + | chr1_3:52755816-52755835 | None:intergenic | 40.0% |
| GAGAATCAACAACTAGTAGC+TGG | - | chr1_3:52755816-52755835 | Msa0124890:CDS | 40.0% | |
| GACACCAGAAATCTCAAACT+TGG | - | chr1_3:52755860-52755879 | Msa0124890:CDS | 40.0% | |
| CGGCATGCATACTACATATT+TGG | + | chr1_3:52756151-52756170 | None:intergenic | 40.0% | |
| ACTACAGGTAGTTGTGAAAG+AGG | - | chr1_3:52756520-52756539 | Msa0124890:CDS | 40.0% | |
| CAGAATTCTGCAAAGCTTCT+GGG | + | chr1_3:52754330-52754349 | None:intergenic | 40.0% | |
| TCAGAATTCTGCAAAGCTTC+TGG | + | chr1_3:52754331-52754350 | None:intergenic | 40.0% | |
| AGAAGCTTTGCAGAATTCTG+AGG | - | chr1_3:52754330-52754349 | Msa0124890:intron | 40.0% | |
| ATACTGCGAAAACCCATCAA+CGG | + | chr1_3:52754707-52754726 | None:intergenic | 40.0% | |
| ! | AGAGGTGCAACTGAATCATT+TGG | + | chr1_3:52754736-52754755 | None:intergenic | 40.0% |
| TGATTCAGTTGCACCTCTTA+TGG | - | chr1_3:52754738-52754757 | Msa0124890:intron | 40.0% | |
| GATTCAGTTGCACCTCTTAT+GGG | - | chr1_3:52754739-52754758 | Msa0124890:intron | 40.0% | |
| CAATCCTCTTCAAAAACAGG+TGG | + | chr1_3:52754781-52754800 | None:intergenic | 40.0% | |
| GGGTTCAAAGGAACATAAGA+AGG | + | chr1_3:52754817-52754836 | None:intergenic | 40.0% | |
| GGACCAAGATAATTGCAAGA+AGG | + | chr1_3:52754847-52754866 | None:intergenic | 40.0% | |
| GCAGTAGTAAGAGAACCATT+AGG | + | chr1_3:52754892-52754911 | None:intergenic | 40.0% | |
| GCTTTGTCTACTGATAGTTC+TGG | - | chr1_3:52754910-52754929 | Msa0124890:CDS | 40.0% | |
| !! | GATAGTTCTGGTTTGTTTGG+TGG | - | chr1_3:52754922-52754941 | Msa0124890:CDS | 40.0% |
| ATTGTCCTGATCCTATTCAG+AGG | - | chr1_3:52755013-52755032 | Msa0124890:CDS | 40.0% | |
| TTGTCCTGATCCTATTCAGA+GGG | - | chr1_3:52755014-52755033 | Msa0124890:CDS | 40.0% | |
| GTTCAACTGATTGAATCGAG+TGG | + | chr1_3:52755222-52755241 | None:intergenic | 40.0% | |
| ! | CTTTTTGCAAAAGGTCATGG+TGG | - | chr1_3:52755492-52755511 | Msa0124890:intron | 40.0% |
| TATATTGGCCAGTAGCAGAA+AGG | - | chr1_3:52755645-52755664 | Msa0124890:intron | 40.0% | |
| TTGTGATTCCTTTCTGCTAC+TGG | + | chr1_3:52755656-52755675 | None:intergenic | 40.0% | |
| !! | GCTACTAGTTGTTGATTCTC+AGG | + | chr1_3:52755816-52755835 | None:intergenic | 40.0% |
| GAGAATCAACAACTAGTAGC+TGG | - | chr1_3:52755816-52755835 | Msa0124890:CDS | 40.0% | |
| GACACCAGAAATCTCAAACT+TGG | - | chr1_3:52755860-52755879 | Msa0124890:CDS | 40.0% | |
| CGGCATGCATACTACATATT+TGG | + | chr1_3:52756151-52756170 | None:intergenic | 40.0% | |
| ACTACAGGTAGTTGTGAAAG+AGG | - | chr1_3:52756520-52756539 | Msa0124890:CDS | 40.0% | |
| CGAAAATTCGAGCGCTAAGA+GGG | + | chr1_3:52754285-52754304 | None:intergenic | 45.0% | |
| TCGAAAATTCGAGCGCTAAG+AGG | + | chr1_3:52754286-52754305 | None:intergenic | 45.0% | |
| GATGTGACTGGAAGGAATGA+AGG | + | chr1_3:52754610-52754629 | None:intergenic | 45.0% | |
| !! | ACTTGCTGTGATGATGTGAC+TGG | + | chr1_3:52754622-52754641 | None:intergenic | 45.0% |
| ACAGCATGTTCATCCGTTGA+TGG | - | chr1_3:52754691-52754710 | Msa0124890:intron | 45.0% | |
| CAGCATGTTCATCCGTTGAT+GGG | - | chr1_3:52754692-52754711 | Msa0124890:intron | 45.0% | |
| GATAAAGGAGCTCCCATAAG+AGG | + | chr1_3:52754754-52754773 | None:intergenic | 45.0% | |
| GAAGGAGAAGAAGGGTTCAA+AGG | + | chr1_3:52754829-52754848 | None:intergenic | 45.0% | |
| TGCAATTATCTTGGTCCTGC+CGG | - | chr1_3:52754850-52754869 | Msa0124890:intron | 45.0% | |
| AACACCCTCTGAATAGGATC+AGG | + | chr1_3:52755021-52755040 | None:intergenic | 45.0% | |
| GGGTTAAACACCCTCTGAAT+AGG | + | chr1_3:52755027-52755046 | None:intergenic | 45.0% | |
| TCAATACCTGAAGGTCAGGA+GGG | + | chr1_3:52755047-52755066 | None:intergenic | 45.0% | |
| ACAGTCAATACCTGAAGGTC+AGG | + | chr1_3:52755051-52755070 | None:intergenic | 45.0% | |
| GAACTGAGAATCGACCAGTT+TGG | - | chr1_3:52755238-52755257 | Msa0124890:intron | 45.0% | |
| GACAAAACCAACTGCCAAAC+TGG | + | chr1_3:52755255-52755274 | None:intergenic | 45.0% | |
| !! | TGAGATTTCTGGTGTCAGAG+TGG | + | chr1_3:52755856-52755875 | None:intergenic | 45.0% |
| CTTGGAAGACTCCACTTTCA+AGG | - | chr1_3:52755878-52755897 | Msa0124890:CDS | 45.0% | |
| GAAGACTCCACTTTCAAGGT+TGG | - | chr1_3:52755882-52755901 | Msa0124890:CDS | 45.0% | |
| TCTAACTCGAGGTCTGCTAT+CGG | + | chr1_3:52756185-52756204 | None:intergenic | 45.0% | |
| CGAAAATTCGAGCGCTAAGA+GGG | + | chr1_3:52754285-52754304 | None:intergenic | 45.0% | |
| TCGAAAATTCGAGCGCTAAG+AGG | + | chr1_3:52754286-52754305 | None:intergenic | 45.0% | |
| GATGTGACTGGAAGGAATGA+AGG | + | chr1_3:52754610-52754629 | None:intergenic | 45.0% | |
| !! | ACTTGCTGTGATGATGTGAC+TGG | + | chr1_3:52754622-52754641 | None:intergenic | 45.0% |
| ACAGCATGTTCATCCGTTGA+TGG | - | chr1_3:52754691-52754710 | Msa0124890:intron | 45.0% | |
| CAGCATGTTCATCCGTTGAT+GGG | - | chr1_3:52754692-52754711 | Msa0124890:intron | 45.0% | |
| GATAAAGGAGCTCCCATAAG+AGG | + | chr1_3:52754754-52754773 | None:intergenic | 45.0% | |
| GAAGGAGAAGAAGGGTTCAA+AGG | + | chr1_3:52754829-52754848 | None:intergenic | 45.0% | |
| TGCAATTATCTTGGTCCTGC+CGG | - | chr1_3:52754850-52754869 | Msa0124890:intron | 45.0% | |
| AACACCCTCTGAATAGGATC+AGG | + | chr1_3:52755021-52755040 | None:intergenic | 45.0% | |
| GGGTTAAACACCCTCTGAAT+AGG | + | chr1_3:52755027-52755046 | None:intergenic | 45.0% | |
| TCAATACCTGAAGGTCAGGA+GGG | + | chr1_3:52755047-52755066 | None:intergenic | 45.0% | |
| ACAGTCAATACCTGAAGGTC+AGG | + | chr1_3:52755051-52755070 | None:intergenic | 45.0% | |
| GAACTGAGAATCGACCAGTT+TGG | - | chr1_3:52755238-52755257 | Msa0124890:intron | 45.0% | |
| GACAAAACCAACTGCCAAAC+TGG | + | chr1_3:52755255-52755274 | None:intergenic | 45.0% | |
| !! | TGAGATTTCTGGTGTCAGAG+TGG | + | chr1_3:52755856-52755875 | None:intergenic | 45.0% |
| CTTGGAAGACTCCACTTTCA+AGG | - | chr1_3:52755878-52755897 | Msa0124890:CDS | 45.0% | |
| GAAGACTCCACTTTCAAGGT+TGG | - | chr1_3:52755882-52755901 | Msa0124890:CDS | 45.0% | |
| TCTAACTCGAGGTCTGCTAT+CGG | + | chr1_3:52756185-52756204 | None:intergenic | 45.0% | |
| ! | GCTGTGATGATGTGACTGGA+AGG | + | chr1_3:52754618-52754637 | None:intergenic | 50.0% |
| TTATCTTGGTCCTGCCGGTA+TGG | - | chr1_3:52754855-52754874 | Msa0124890:intron | 50.0% | |
| ATGGCGGCATACATGCCTAA+TGG | - | chr1_3:52754874-52754893 | Msa0124890:intron | 50.0% | |
| GTTTAACCCTCCTGACCTTC+AGG | - | chr1_3:52755038-52755057 | Msa0124890:CDS | 50.0% | |
| GTCAATACCTGAAGGTCAGG+AGG | + | chr1_3:52755048-52755067 | None:intergenic | 50.0% | |
| GAATCGACCAGTTTGGCAGT+TGG | - | chr1_3:52755245-52755264 | Msa0124890:intron | 50.0% | |
| CAACAACTAGTAGCTGGTGC+TGG | - | chr1_3:52755822-52755841 | Msa0124890:CDS | 50.0% | |
| GTATGCATGCCGCAAAACTC+TGG | - | chr1_3:52756159-52756178 | Msa0124890:CDS | 50.0% | |
| ! | TGCTATCGGCCAGAGTTTTG+CGG | + | chr1_3:52756171-52756190 | None:intergenic | 50.0% |
| GATAGCAGACCTCGAGTTAG+AGG | - | chr1_3:52756184-52756203 | Msa0124890:CDS | 50.0% | |
| GCAAATCGTCCTCTAACTCG+AGG | + | chr1_3:52756196-52756215 | None:intergenic | 50.0% | |
| AACTTGGCTACTGCACCGTT+TGG | - | chr1_3:52756355-52756374 | Msa0124890:CDS | 50.0% | |
| ! | GCTGTGATGATGTGACTGGA+AGG | + | chr1_3:52754618-52754637 | None:intergenic | 50.0% |
| TTATCTTGGTCCTGCCGGTA+TGG | - | chr1_3:52754855-52754874 | Msa0124890:intron | 50.0% | |
| ATGGCGGCATACATGCCTAA+TGG | - | chr1_3:52754874-52754893 | Msa0124890:intron | 50.0% | |
| GTTTAACCCTCCTGACCTTC+AGG | - | chr1_3:52755038-52755057 | Msa0124890:CDS | 50.0% | |
| GTCAATACCTGAAGGTCAGG+AGG | + | chr1_3:52755048-52755067 | None:intergenic | 50.0% | |
| GAATCGACCAGTTTGGCAGT+TGG | - | chr1_3:52755245-52755264 | Msa0124890:intron | 50.0% | |
| CAACAACTAGTAGCTGGTGC+TGG | - | chr1_3:52755822-52755841 | Msa0124890:CDS | 50.0% | |
| GTATGCATGCCGCAAAACTC+TGG | - | chr1_3:52756159-52756178 | Msa0124890:CDS | 50.0% | |
| ! | TGCTATCGGCCAGAGTTTTG+CGG | + | chr1_3:52756171-52756190 | None:intergenic | 50.0% |
| GATAGCAGACCTCGAGTTAG+AGG | - | chr1_3:52756184-52756203 | Msa0124890:CDS | 50.0% | |
| GCAAATCGTCCTCTAACTCG+AGG | + | chr1_3:52756196-52756215 | None:intergenic | 50.0% | |
| AACTTGGCTACTGCACCGTT+TGG | - | chr1_3:52756355-52756374 | Msa0124890:CDS | 50.0% | |
| AGGCATGTATGCCGCCATAC+CGG | + | chr1_3:52754872-52754891 | None:intergenic | 55.0% | |
| AGGCATGTATGCCGCCATAC+CGG | + | chr1_3:52754872-52754891 | None:intergenic | 55.0% | |
| TCTTGGTCCTGCCGGTATGG+CGG | - | chr1_3:52754858-52754877 | Msa0124890:intron | 60.0% | |
| ATGTATGCCGCCATACCGGC+AGG | + | chr1_3:52754868-52754887 | None:intergenic | 60.0% | |
| TCTTGGTCCTGCCGGTATGG+CGG | - | chr1_3:52754858-52754877 | Msa0124890:intron | 60.0% | |
| ATGTATGCCGCCATACCGGC+AGG | + | chr1_3:52754868-52754887 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 52754232 | 52756634 | 52754232 | ID=Msa0124890;Name=Msa0124890 |
| chr1_3 | mRNA | 52754232 | 52756634 | 52754232 | ID=Msa0124890-mRNA-1;Parent=Msa0124890;Name=Msa0124890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|415 |
| chr1_3 | exon | 52755807 | 52756634 | 52755807 | ID=Msa0124890-mRNA-1:exon:16230;Parent=Msa0124890-mRNA-1 |
| chr1_3 | exon | 52754877 | 52755062 | 52754877 | ID=Msa0124890-mRNA-1:exon:16229;Parent=Msa0124890-mRNA-1 |
| chr1_3 | exon | 52754581 | 52754706 | 52754581 | ID=Msa0124890-mRNA-1:exon:16228;Parent=Msa0124890-mRNA-1 |
| chr1_3 | exon | 52754232 | 52754339 | 52754232 | ID=Msa0124890-mRNA-1:exon:16227;Parent=Msa0124890-mRNA-1 |
| chr1_3 | CDS | 52755807 | 52756634 | 52755807 | ID=Msa0124890-mRNA-1:cds;Parent=Msa0124890-mRNA-1 |
| chr1_3 | CDS | 52754877 | 52755062 | 52754877 | ID=Msa0124890-mRNA-1:cds;Parent=Msa0124890-mRNA-1 |
| chr1_3 | CDS | 52754581 | 52754706 | 52754581 | ID=Msa0124890-mRNA-1:cds;Parent=Msa0124890-mRNA-1 |
| chr1_3 | CDS | 52754232 | 52754339 | 52754232 | ID=Msa0124890-mRNA-1:cds;Parent=Msa0124890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
