Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002410 | KEH42657.1 | 99.277 | 415 | 2 | 1 | 1 | 415 | 1 | 414 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002410 | A0A072VLD7 | 99.277 | 415 | 2 | 1 | 1 | 415 | 1 | 414 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1002410 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029400 | Msa1002410 | 0.905757 | 3.063879e-80 | -8.615850e-47 |
| Msa0124890 | Msa1002410 | 0.865628 | 5.143505e-65 | -8.615850e-47 |
| Msa0169430 | Msa1002410 | 0.911905 | 3.580598e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002410 | MtrunA17_Chr1g0186171 | 99.277 | 415 | 2 | 1 | 1 | 415 | 1 | 414 | 0.0 | 840 |
| Msa1002410 | MtrunA17_Chr1g0168401 | 62.818 | 433 | 125 | 12 | 1 | 415 | 1 | 415 | 5.39e-152 | 436 |
| Msa1002410 | MtrunA17_Chr8g0387241 | 39.873 | 158 | 69 | 5 | 209 | 361 | 133 | 269 | 1.10e-23 | 100 |
| Msa1002410 | MtrunA17_Chr2g0311591 | 54.545 | 77 | 35 | 0 | 298 | 374 | 151 | 227 | 2.69e-21 | 92.8 |
| Msa1002410 | MtrunA17_Chr5g0397361 | 56.944 | 72 | 31 | 0 | 289 | 360 | 145 | 216 | 6.07e-20 | 88.6 |
| Msa1002410 | MtrunA17_Chr2g0327621 | 45.918 | 98 | 51 | 1 | 265 | 362 | 105 | 200 | 2.07e-19 | 87.0 |
| Msa1002410 | MtrunA17_Chr4g0030421 | 57.377 | 61 | 26 | 0 | 302 | 362 | 20 | 80 | 2.97e-18 | 80.9 |
| Msa1002410 | MtrunA17_Chr1g0147111 | 36.296 | 135 | 69 | 4 | 229 | 362 | 159 | 277 | 1.28e-16 | 79.7 |
| Msa1002410 | MtrunA17_Chr3g0126721 | 60.000 | 55 | 22 | 0 | 313 | 367 | 226 | 280 | 3.46e-15 | 75.5 |
| Msa1002410 | MtrunA17_Chr3g0136701 | 42.308 | 78 | 39 | 1 | 288 | 365 | 209 | 280 | 3.87e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002410 | AT1G04500.3 | 51.069 | 421 | 147 | 15 | 9 | 415 | 2 | 377 | 1.38e-118 | 350 |
| Msa1002410 | AT1G04500.4 | 51.069 | 421 | 147 | 15 | 9 | 415 | 11 | 386 | 5.57e-118 | 349 |
| Msa1002410 | AT1G04500.1 | 51.069 | 421 | 147 | 15 | 9 | 415 | 11 | 386 | 5.57e-118 | 349 |
| Msa1002410 | AT2G33350.2 | 49.531 | 426 | 159 | 16 | 13 | 415 | 17 | 409 | 1.18e-101 | 308 |
| Msa1002410 | AT2G33350.4 | 49.531 | 426 | 159 | 16 | 13 | 415 | 6 | 398 | 1.75e-101 | 307 |
| Msa1002410 | AT2G33350.5 | 49.531 | 426 | 159 | 16 | 13 | 415 | 26 | 418 | 4.74e-101 | 307 |
| Msa1002410 | AT2G33350.1 | 48.946 | 427 | 161 | 16 | 13 | 415 | 17 | 410 | 7.58e-100 | 303 |
| Msa1002410 | AT1G04500.2 | 45.376 | 346 | 126 | 16 | 9 | 338 | 11 | 309 | 8.75e-70 | 225 |
| Msa1002410 | AT2G33350.3 | 43.678 | 348 | 141 | 15 | 13 | 338 | 17 | 331 | 9.21e-60 | 198 |
| Msa1002410 | AT5G41380.1 | 56.250 | 96 | 33 | 3 | 266 | 361 | 173 | 259 | 1.12e-23 | 100 |
| Msa1002410 | AT1G63820.1 | 40.833 | 120 | 69 | 1 | 264 | 381 | 137 | 256 | 3.34e-23 | 99.4 |
| Msa1002410 | AT3G12890.1 | 52.809 | 89 | 36 | 1 | 308 | 396 | 130 | 212 | 3.85e-22 | 95.1 |
| Msa1002410 | AT4G27900.1 | 38.144 | 97 | 45 | 2 | 266 | 362 | 178 | 259 | 4.69e-16 | 78.2 |
| Msa1002410 | AT4G27900.2 | 38.144 | 97 | 45 | 2 | 266 | 362 | 178 | 259 | 4.69e-16 | 78.2 |
| Msa1002410 | AT5G53420.2 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.28e-15 | 73.9 |
| Msa1002410 | AT5G53420.5 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.28e-15 | 73.9 |
| Msa1002410 | AT5G53420.4 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.28e-15 | 73.9 |
| Msa1002410 | AT5G59990.1 | 39.850 | 133 | 63 | 3 | 265 | 397 | 120 | 235 | 3.44e-15 | 75.1 |
| Msa1002410 | AT5G53420.1 | 65.957 | 47 | 16 | 0 | 315 | 361 | 216 | 262 | 6.74e-15 | 74.7 |
Find 78 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCCAAGTTTGAGATTTC+TGG | 0.139924 | 6_4:-88022261 | None:intergenic |
| TGATTCAGTTGCACCTCTTA+TGG | 0.196419 | 6_4:+88021138 | Msa1002410:CDS |
| TTTGCAAAGAATGATGATTT+TGG | 0.203362 | 6_4:+88022608 | Msa1002410:CDS |
| TCAGAATTCTGCAAAGCTTC+TGG | 0.225403 | 6_4:-88020728 | None:intergenic |
| TCCTGTAAACATTGATATAA+AGG | 0.285030 | 6_4:-88020647 | None:intergenic |
| GTTTAACCCTCCTGACCTTC+AGG | 0.295741 | 6_4:+88021438 | Msa1002410:CDS |
| TCTCCTTCTTGCAATTATCT+TGG | 0.304557 | 6_4:+88021241 | Msa1002410:CDS |
| TGATAGATTATTGCTATTGT+TGG | 0.307253 | 6_4:-88020903 | None:intergenic |
| TGGTTTGTTTGGTGGAAATA+TGG | 0.310217 | 6_4:+88021330 | Msa1002410:CDS |
| TCCTTTATATCAATGTTTAC+AGG | 0.317206 | 6_4:+88020646 | Msa1002410:CDS |
| TCGAAAATTCGAGCGCTAAG+AGG | 0.329398 | 6_4:-88020683 | None:intergenic |
| ACTGATAGTTCTGGTTTGTT+TGG | 0.336862 | 6_4:+88021319 | Msa1002410:CDS |
| TAATATATTTGTTGCATATG+AGG | 0.345362 | 6_4:-88020789 | None:intergenic |
| GATTCAGTTGCACCTCTTAT+GGG | 0.348322 | 6_4:+88021139 | Msa1002410:CDS |
| GCTTTGTCTACTGATAGTTC+TGG | 0.348575 | 6_4:+88021310 | Msa1002410:CDS |
| AAACTTCAGCAAGAAAATTA+AGG | 0.349765 | 6_4:+88022365 | Msa1002410:CDS |
| CTTGGAAGACTCCACTTTCA+AGG | 0.364962 | 6_4:+88022275 | Msa1002410:CDS |
| AAAACAGGTGGTAATGATAA+AGG | 0.370742 | 6_4:-88021166 | None:intergenic |
| CTTGATTATCAAGGAGATAA+TGG | 0.371169 | 6_4:+88021382 | Msa1002410:CDS |
| AGAGGTGCAACTGAATCATT+TGG | 0.378768 | 6_4:-88021133 | None:intergenic |
| GTTGATATTGTTGTTTGTGC+TGG | 0.381949 | 6_4:-88020870 | None:intergenic |
| GCTACTAGTTGTTGATTCTC+AGG | 0.396916 | 6_4:-88022210 | None:intergenic |
| CAGAATTCTGCAAAGCTTCT+GGG | 0.401559 | 6_4:-88020727 | None:intergenic |
| GGGTTAAACACCCTCTGAAT+AGG | 0.414662 | 6_4:-88021424 | None:intergenic |
| AATGGAATAGTTGCATTTGA+AGG | 0.424110 | 6_4:-88022994 | None:intergenic |
| TGCAATTATCTTGGTCCTGC+CGG | 0.431147 | 6_4:+88021250 | Msa1002410:CDS |
| GCAACTATTCCATTCAATCA+TGG | 0.437657 | 6_4:+88023003 | Msa1002410:CDS |
| GATAGTTCTGGTTTGTTTGG+TGG | 0.449481 | 6_4:+88021322 | Msa1002410:CDS |
| TAATTGCAAGAAGGAGAAGA+AGG | 0.453970 | 6_4:-88021235 | None:intergenic |
| ATATTGTTGTTTGTGCTGGT+TGG | 0.455798 | 6_4:-88020866 | None:intergenic |
| ACAGCATGTTCATCCGTTGA+TGG | 0.462537 | 6_4:+88021091 | Msa1002410:CDS |
| TTATCTTGGTCCTGCCGGTA+TGG | 0.463392 | 6_4:+88021255 | Msa1002410:CDS |
| TGTGAAAGAGGAAGATGATA+TGG | 0.463481 | 6_4:+88022929 | Msa1002410:CDS |
| GACACCAGAAATCTCAAACT+TGG | 0.464943 | 6_4:+88022257 | Msa1002410:CDS |
| CGAAAATTCGAGCGCTAAGA+GGG | 0.464964 | 6_4:-88020682 | None:intergenic |
| TGAAGAAGAAGATGAAGAAG+AGG | 0.466581 | 6_4:+88022661 | Msa1002410:CDS |
| GAAGACTCCACTTTCAAGGT+TGG | 0.473074 | 6_4:+88022279 | Msa1002410:CDS |
| ACAGTCAATACCTGAAGGTC+AGG | 0.480367 | 6_4:-88021448 | None:intergenic |
| GATAGCAGACCTCGAGTTAG+AGG | 0.482620 | 6_4:+88022581 | Msa1002410:CDS |
| GAATCAAATCCATGATTGAA+TGG | 0.483820 | 6_4:-88023012 | None:intergenic |
| CAGCATGTTCATCCGTTGAT+GGG | 0.484565 | 6_4:+88021092 | Msa1002410:CDS |
| GCAGTAGTAAGAGAACCATT+AGG | 0.493364 | 6_4:-88021289 | None:intergenic |
| ATGGCGGCATACATGCCTAA+TGG | 0.504835 | 6_4:+88021274 | Msa1002410:CDS |
| GTATGCATGCCGCAAAACTC+TGG | 0.507026 | 6_4:+88022556 | Msa1002410:intron |
| GATAAAGGAGCTCCCATAAG+AGG | 0.508957 | 6_4:-88021151 | None:intergenic |
| TTGTCCTGATCCTATTCAGA+GGG | 0.518686 | 6_4:+88021414 | Msa1002410:CDS |
| AACACCCTCTGAATAGGATC+AGG | 0.520235 | 6_4:-88021418 | None:intergenic |
| AATGAAGGAACATTGAAAGA+TGG | 0.520786 | 6_4:-88020992 | None:intergenic |
| ATGTATGCCGCCATACCGGC+AGG | 0.531779 | 6_4:-88021265 | None:intergenic |
| ACTACAGGTAGTTGTGAAAG+AGG | 0.540728 | 6_4:+88022917 | Msa1002410:intron |
| GAGAATCAACAACTAGTAGC+TGG | 0.540899 | 6_4:+88022213 | Msa1002410:CDS |
| ACACAAGAACTTGATTATCA+AGG | 0.541577 | 6_4:+88021373 | Msa1002410:CDS |
| GAAGGAGAAGAAGGGTTCAA+AGG | 0.541723 | 6_4:-88021226 | None:intergenic |
| GAAAACTTTCTGTTGAACAA+AGG | 0.552214 | 6_4:+88022301 | Msa1002410:CDS |
| GGGTTCAAAGGAACATAAGA+AGG | 0.558201 | 6_4:-88021214 | None:intergenic |
| GATATATTTGCTCATATCAG+TGG | 0.567084 | 6_4:+88022963 | Msa1002410:CDS |
| AGGCATGTATGCCGCCATAC+CGG | 0.574531 | 6_4:-88021269 | None:intergenic |
| TCTAACTCGAGGTCTGCTAT+CGG | 0.575030 | 6_4:-88022579 | None:intergenic |
| CAACAACTAGTAGCTGGTGC+TGG | 0.575480 | 6_4:+88022219 | Msa1002410:CDS |
| GATGTGACTGGAAGGAATGA+AGG | 0.578846 | 6_4:-88021007 | None:intergenic |
| AATTGCAAGAAGGAGAAGAA+GGG | 0.582488 | 6_4:-88021234 | None:intergenic |
| ACTTGCTGTGATGATGTGAC+TGG | 0.583948 | 6_4:-88021019 | None:intergenic |
| TCTTGGTCCTGCCGGTATGG+CGG | 0.591145 | 6_4:+88021258 | Msa1002410:CDS |
| AGAAGCTTTGCAGAATTCTG+AGG | 0.591368 | 6_4:+88020730 | Msa1002410:CDS |
| GTCAATACCTGAAGGTCAGG+AGG | 0.601952 | 6_4:-88021445 | None:intergenic |
| ATTGTCCTGATCCTATTCAG+AGG | 0.615011 | 6_4:+88021413 | Msa1002410:CDS |
| TGATAGTGAGAAATCTATTG+AGG | 0.622836 | 6_4:-88020969 | None:intergenic |
| GGACCAAGATAATTGCAAGA+AGG | 0.631874 | 6_4:-88021244 | None:intergenic |
| GCAAATCGTCCTCTAACTCG+AGG | 0.634840 | 6_4:-88022590 | None:intergenic |
| GATATGAGCAAATATATCTG+AGG | 0.650959 | 6_4:-88022958 | None:intergenic |
| TCAATACCTGAAGGTCAGGA+GGG | 0.652626 | 6_4:-88021444 | None:intergenic |
| GCTGTGATGATGTGACTGGA+AGG | 0.653513 | 6_4:-88021015 | None:intergenic |
| GTAAGTTGAACATGATGATG+AGG | 0.662251 | 6_4:-88021070 | None:intergenic |
| GATGCAAATAGAACTGCTAG+TGG | 0.664408 | 6_4:+88022632 | Msa1002410:CDS |
| ATACTGCGAAAACCCATCAA+CGG | 0.666515 | 6_4:-88021104 | None:intergenic |
| TGAGATTTCTGGTGTCAGAG+TGG | 0.672060 | 6_4:-88022250 | None:intergenic |
| TAAAGGAAATGTAAACAACA+TGG | 0.694278 | 6_4:-88020630 | None:intergenic |
| TAGCAATAGCAATAACACAG+TGG | 0.772848 | 6_4:+88020835 | Msa1002410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTACTTTTTCATT+TGG | + | chr6_4:88021743-88021762 | Msa1002410:intron | 10.0% |
| !! | AAAATAAATGTTTCAAAAAT+CGG | - | chr6_4:88021850-88021869 | None:intergenic | 10.0% |
| !!! | ATATTTTTTACTTTTTCATT+TGG | + | chr6_4:88021743-88021762 | Msa1002410:intron | 10.0% |
| !! | AAAATAAATGTTTCAAAAAT+CGG | - | chr6_4:88021850-88021869 | None:intergenic | 10.0% |
| !! | TAAAAAATAACTATGGAAAA+TGG | - | chr6_4:88021542-88021561 | None:intergenic | 15.0% |
| !! | TCATTCATAAAAAATAACTA+TGG | - | chr6_4:88021549-88021568 | None:intergenic | 15.0% |
| !!! | ATAATGCTAATTTATTTTTC+AGG | + | chr6_4:88022179-88022198 | Msa1002410:intron | 15.0% |
| !! | TATCTACTTATTTATTTGAT+TGG | + | chr6_4:88022859-88022878 | Msa1002410:intron | 15.0% |
| !! | TAAAAAATAACTATGGAAAA+TGG | - | chr6_4:88021542-88021561 | None:intergenic | 15.0% |
| !! | TCATTCATAAAAAATAACTA+TGG | - | chr6_4:88021549-88021568 | None:intergenic | 15.0% |
| !!! | ATAATGCTAATTTATTTTTC+AGG | + | chr6_4:88022179-88022198 | Msa1002410:intron | 15.0% |
| !! | TATCTACTTATTTATTTGAT+TGG | + | chr6_4:88022859-88022878 | Msa1002410:intron | 15.0% |
| !!! | TAATATATTTGTTGCATATG+AGG | - | chr6_4:88020792-88020811 | None:intergenic | 20.0% |
| !! | AATATACAAAAAATGAGAAC+AGG | - | chr6_4:88021728-88021747 | None:intergenic | 20.0% |
| !!! | TTATTTTAAAGCTTTGTAAG+AGG | + | chr6_4:88021863-88021882 | Msa1002410:intron | 20.0% |
| !!! | TATGCTACTTTTTTTTTTGT+AGG | - | chr6_4:88022021-88022040 | None:intergenic | 20.0% |
| !! | AAAAAAGTAGCATAGTATAT+TGG | + | chr6_4:88022027-88022046 | Msa1002410:intron | 20.0% |
| !!! | CTTTTTTCCAATAAAATTGA+TGG | + | chr6_4:88022073-88022092 | Msa1002410:intron | 20.0% |
| !!! | TGTTTTACCATCAATTTTAT+TGG | - | chr6_4:88022083-88022102 | None:intergenic | 20.0% |
| !! | TTACAAGTTCATATTTAACT+TGG | + | chr6_4:88022736-88022755 | Msa1002410:intron | 20.0% |
| !!! | AATTAAGTTGTTTATCCAAA+CGG | - | chr6_4:88022770-88022789 | None:intergenic | 20.0% |
| !!! | TAATATATTTGTTGCATATG+AGG | - | chr6_4:88020792-88020811 | None:intergenic | 20.0% |
| !! | AATATACAAAAAATGAGAAC+AGG | - | chr6_4:88021728-88021747 | None:intergenic | 20.0% |
| !!! | TTATTTTAAAGCTTTGTAAG+AGG | + | chr6_4:88021863-88021882 | Msa1002410:intron | 20.0% |
| !!! | TATGCTACTTTTTTTTTTGT+AGG | - | chr6_4:88022021-88022040 | None:intergenic | 20.0% |
| !! | AAAAAAGTAGCATAGTATAT+TGG | + | chr6_4:88022027-88022046 | Msa1002410:intron | 20.0% |
| !!! | CTTTTTTCCAATAAAATTGA+TGG | + | chr6_4:88022073-88022092 | Msa1002410:intron | 20.0% |
| !!! | TGTTTTACCATCAATTTTAT+TGG | - | chr6_4:88022083-88022102 | None:intergenic | 20.0% |
| !! | TTACAAGTTCATATTTAACT+TGG | + | chr6_4:88022736-88022755 | Msa1002410:intron | 20.0% |
| !!! | AATTAAGTTGTTTATCCAAA+CGG | - | chr6_4:88022770-88022789 | None:intergenic | 20.0% |
| ! | TCCTTTATATCAATGTTTAC+AGG | + | chr6_4:88020646-88020665 | Msa1002410:CDS | 25.0% |
| ! | TCCTGTAAACATTGATATAA+AGG | - | chr6_4:88020650-88020669 | None:intergenic | 25.0% |
| !! | TGATAGATTATTGCTATTGT+TGG | - | chr6_4:88020906-88020925 | None:intergenic | 25.0% |
| ! | TTAGTCATCCAATTCAATTA+TGG | + | chr6_4:88021769-88021788 | Msa1002410:intron | 25.0% |
| ! | AGTTCAAACCATAATTGAAT+TGG | - | chr6_4:88021780-88021799 | None:intergenic | 25.0% |
| ! | AAATGTTTCAAAAATCGGAT+TGG | - | chr6_4:88021845-88021864 | None:intergenic | 25.0% |
| !! | AGGTAATTTCTTTTTGCAAA+AGG | + | chr6_4:88021883-88021902 | Msa1002410:intron | 25.0% |
| ! | ATAAACTGTTTACATATCTG+TGG | - | chr6_4:88021919-88021938 | None:intergenic | 25.0% |
| ! | ATATTGGCATATATTCTATG+CGG | - | chr6_4:88021943-88021962 | None:intergenic | 25.0% |
| ! | AATGTCCTATTTCATATGAA+TGG | + | chr6_4:88022114-88022133 | Msa1002410:intron | 25.0% |
| ! | AAGAACCATTCATATGAAAT+AGG | - | chr6_4:88022122-88022141 | None:intergenic | 25.0% |
| ! | AAACTTCAGCAAGAAAATTA+AGG | + | chr6_4:88022365-88022384 | Msa1002410:CDS | 25.0% |
| ! | AAGTAACATGATAACTGATA+AGG | - | chr6_4:88022440-88022459 | None:intergenic | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr6_4:88022608-88022627 | Msa1002410:CDS | 25.0% |
| ! | TCCTTTATATCAATGTTTAC+AGG | + | chr6_4:88020646-88020665 | Msa1002410:CDS | 25.0% |
| ! | TCCTGTAAACATTGATATAA+AGG | - | chr6_4:88020650-88020669 | None:intergenic | 25.0% |
| !! | TGATAGATTATTGCTATTGT+TGG | - | chr6_4:88020906-88020925 | None:intergenic | 25.0% |
| ! | TTAGTCATCCAATTCAATTA+TGG | + | chr6_4:88021769-88021788 | Msa1002410:intron | 25.0% |
| ! | AGTTCAAACCATAATTGAAT+TGG | - | chr6_4:88021780-88021799 | None:intergenic | 25.0% |
| ! | AAATGTTTCAAAAATCGGAT+TGG | - | chr6_4:88021845-88021864 | None:intergenic | 25.0% |
| !! | AGGTAATTTCTTTTTGCAAA+AGG | + | chr6_4:88021883-88021902 | Msa1002410:intron | 25.0% |
| ! | ATAAACTGTTTACATATCTG+TGG | - | chr6_4:88021919-88021938 | None:intergenic | 25.0% |
| ! | ATATTGGCATATATTCTATG+CGG | - | chr6_4:88021943-88021962 | None:intergenic | 25.0% |
| ! | AATGTCCTATTTCATATGAA+TGG | + | chr6_4:88022114-88022133 | Msa1002410:intron | 25.0% |
| ! | AAGAACCATTCATATGAAAT+AGG | - | chr6_4:88022122-88022141 | None:intergenic | 25.0% |
| ! | AAACTTCAGCAAGAAAATTA+AGG | + | chr6_4:88022365-88022384 | Msa1002410:CDS | 25.0% |
| ! | AAGTAACATGATAACTGATA+AGG | - | chr6_4:88022440-88022459 | None:intergenic | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr6_4:88022608-88022627 | Msa1002410:CDS | 25.0% |
| ! | TGATAGTGAGAAATCTATTG+AGG | - | chr6_4:88020972-88020991 | None:intergenic | 30.0% |
| AATGAAGGAACATTGAAAGA+TGG | - | chr6_4:88020995-88021014 | None:intergenic | 30.0% | |
| ! | AAAACAGGTGGTAATGATAA+AGG | - | chr6_4:88021169-88021188 | None:intergenic | 30.0% |
| ! | TTTGGTGGAAATATGGTTTT+TGG | + | chr6_4:88021337-88021356 | Msa1002410:CDS | 30.0% |
| ACACAAGAACTTGATTATCA+AGG | + | chr6_4:88021373-88021392 | Msa1002410:CDS | 30.0% | |
| CTTGATTATCAAGGAGATAA+TGG | + | chr6_4:88021382-88021401 | Msa1002410:CDS | 30.0% | |
| !!! | CAAGCGATGTTTTTTAAAAC+TGG | + | chr6_4:88021590-88021609 | Msa1002410:intron | 30.0% |
| TACAAAAAATGAGAACAGGT+TGG | - | chr6_4:88021724-88021743 | None:intergenic | 30.0% | |
| ACTTTAGGTCATTGTTCAAT+TGG | - | chr6_4:88021810-88021829 | None:intergenic | 30.0% | |
| ! | TTTCTTTTTGCAAAAGGTCA+TGG | + | chr6_4:88021889-88021908 | Msa1002410:intron | 30.0% |
| TTATCTTCAGATTCAGATTC+TGG | - | chr6_4:88022160-88022179 | None:intergenic | 30.0% | |
| GAAAACTTTCTGTTGAACAA+AGG | + | chr6_4:88022301-88022320 | Msa1002410:CDS | 30.0% | |
| TATGAACTTGTAAAGTGTGT+TGG | - | chr6_4:88022729-88022748 | None:intergenic | 30.0% | |
| ! | CATTTGATAACTGTAACTAC+AGG | + | chr6_4:88022902-88022921 | Msa1002410:intron | 30.0% |
| GATATGAGCAAATATATCTG+AGG | - | chr6_4:88022961-88022980 | None:intergenic | 30.0% | |
| GATATATTTGCTCATATCAG+TGG | + | chr6_4:88022963-88022982 | Msa1002410:CDS | 30.0% | |
| AATGGAATAGTTGCATTTGA+AGG | - | chr6_4:88022997-88023016 | None:intergenic | 30.0% | |
| ! | TGATAGTGAGAAATCTATTG+AGG | - | chr6_4:88020972-88020991 | None:intergenic | 30.0% |
| AATGAAGGAACATTGAAAGA+TGG | - | chr6_4:88020995-88021014 | None:intergenic | 30.0% | |
| ! | AAAACAGGTGGTAATGATAA+AGG | - | chr6_4:88021169-88021188 | None:intergenic | 30.0% |
| ! | TTTGGTGGAAATATGGTTTT+TGG | + | chr6_4:88021337-88021356 | Msa1002410:CDS | 30.0% |
| ACACAAGAACTTGATTATCA+AGG | + | chr6_4:88021373-88021392 | Msa1002410:CDS | 30.0% | |
| CTTGATTATCAAGGAGATAA+TGG | + | chr6_4:88021382-88021401 | Msa1002410:CDS | 30.0% | |
| !!! | CAAGCGATGTTTTTTAAAAC+TGG | + | chr6_4:88021590-88021609 | Msa1002410:intron | 30.0% |
| TACAAAAAATGAGAACAGGT+TGG | - | chr6_4:88021724-88021743 | None:intergenic | 30.0% | |
| ACTTTAGGTCATTGTTCAAT+TGG | - | chr6_4:88021810-88021829 | None:intergenic | 30.0% | |
| ! | TTTCTTTTTGCAAAAGGTCA+TGG | + | chr6_4:88021889-88021908 | Msa1002410:intron | 30.0% |
| TTATCTTCAGATTCAGATTC+TGG | - | chr6_4:88022160-88022179 | None:intergenic | 30.0% | |
| GAAAACTTTCTGTTGAACAA+AGG | + | chr6_4:88022301-88022320 | Msa1002410:CDS | 30.0% | |
| TATGAACTTGTAAAGTGTGT+TGG | - | chr6_4:88022729-88022748 | None:intergenic | 30.0% | |
| ! | CATTTGATAACTGTAACTAC+AGG | + | chr6_4:88022902-88022921 | Msa1002410:intron | 30.0% |
| GATATGAGCAAATATATCTG+AGG | - | chr6_4:88022961-88022980 | None:intergenic | 30.0% | |
| GATATATTTGCTCATATCAG+TGG | + | chr6_4:88022963-88022982 | Msa1002410:CDS | 30.0% | |
| AATGGAATAGTTGCATTTGA+AGG | - | chr6_4:88022997-88023016 | None:intergenic | 30.0% | |
| TAGCAATAGCAATAACACAG+TGG | + | chr6_4:88020835-88020854 | Msa1002410:CDS | 35.0% | |
| !! | ATATTGTTGTTTGTGCTGGT+TGG | - | chr6_4:88020869-88020888 | None:intergenic | 35.0% |
| !! | GTTGATATTGTTGTTTGTGC+TGG | - | chr6_4:88020873-88020892 | None:intergenic | 35.0% |
| ! | GTAAGTTGAACATGATGATG+AGG | - | chr6_4:88021073-88021092 | None:intergenic | 35.0% |
| !!! | ATTACCACCTGTTTTTGAAG+AGG | + | chr6_4:88021174-88021193 | Msa1002410:CDS | 35.0% |
| ATGCAATCCTCTTCAAAAAC+AGG | - | chr6_4:88021184-88021203 | None:intergenic | 35.0% | |
| AATTGCAAGAAGGAGAAGAA+GGG | - | chr6_4:88021237-88021256 | None:intergenic | 35.0% | |
| TAATTGCAAGAAGGAGAAGA+AGG | - | chr6_4:88021238-88021257 | None:intergenic | 35.0% | |
| TCTCCTTCTTGCAATTATCT+TGG | + | chr6_4:88021241-88021260 | Msa1002410:CDS | 35.0% | |
| !! | ACTGATAGTTCTGGTTTGTT+TGG | + | chr6_4:88021319-88021338 | Msa1002410:CDS | 35.0% |
| !! | TGGTTTGTTTGGTGGAAATA+TGG | + | chr6_4:88021330-88021349 | Msa1002410:CDS | 35.0% |
| TTGAAACAGTCAATACCTGA+AGG | - | chr6_4:88021456-88021475 | None:intergenic | 35.0% | |
| GATTGAACGTAATTGAGTCA+CGG | + | chr6_4:88021693-88021712 | Msa1002410:intron | 35.0% | |
| TGGAGATCTTGTGAAACTTT+AGG | - | chr6_4:88021825-88021844 | None:intergenic | 35.0% | |
| !!! | GCTACTGTTTTGATGGATAT+TGG | - | chr6_4:88021959-88021978 | None:intergenic | 35.0% |
| !! | ATTGCTAGCTACTGTTTTGA+TGG | - | chr6_4:88021966-88021985 | None:intergenic | 35.0% |
| GGTGAGACTGTGATTATAAA+GGG | - | chr6_4:88022000-88022019 | None:intergenic | 35.0% | |
| AGGTGAGACTGTGATTATAA+AGG | - | chr6_4:88022001-88022020 | None:intergenic | 35.0% | |
| ! | TCAGATTCAGATTCTGGAAA+GGG | - | chr6_4:88022154-88022173 | None:intergenic | 35.0% |
| ! | TTCAGATTCAGATTCTGGAA+AGG | - | chr6_4:88022155-88022174 | None:intergenic | 35.0% |
| ! | TCTTCCAAGTTTGAGATTTC+TGG | - | chr6_4:88022264-88022283 | None:intergenic | 35.0% |
| ! | AAGTTTTCCAACCTTGAAAG+TGG | - | chr6_4:88022289-88022308 | None:intergenic | 35.0% |
| CAGTTCTGTTTGATTATGCA+TGG | - | chr6_4:88022413-88022432 | None:intergenic | 35.0% | |
| ATATGCAGTAAGAAGAGAAG+TGG | - | chr6_4:88022498-88022517 | None:intergenic | 35.0% | |
| TGAAGAAGAAGATGAAGAAG+AGG | + | chr6_4:88022661-88022680 | Msa1002410:CDS | 35.0% | |
| TGTGAAAGAGGAAGATGATA+TGG | + | chr6_4:88022929-88022948 | Msa1002410:CDS | 35.0% | |
| GCAACTATTCCATTCAATCA+TGG | + | chr6_4:88023003-88023022 | Msa1002410:CDS | 35.0% | |
| TAGCAATAGCAATAACACAG+TGG | + | chr6_4:88020835-88020854 | Msa1002410:CDS | 35.0% | |
| !! | ATATTGTTGTTTGTGCTGGT+TGG | - | chr6_4:88020869-88020888 | None:intergenic | 35.0% |
| !! | GTTGATATTGTTGTTTGTGC+TGG | - | chr6_4:88020873-88020892 | None:intergenic | 35.0% |
| ! | GTAAGTTGAACATGATGATG+AGG | - | chr6_4:88021073-88021092 | None:intergenic | 35.0% |
| !!! | ATTACCACCTGTTTTTGAAG+AGG | + | chr6_4:88021174-88021193 | Msa1002410:CDS | 35.0% |
| ATGCAATCCTCTTCAAAAAC+AGG | - | chr6_4:88021184-88021203 | None:intergenic | 35.0% | |
| AATTGCAAGAAGGAGAAGAA+GGG | - | chr6_4:88021237-88021256 | None:intergenic | 35.0% | |
| TAATTGCAAGAAGGAGAAGA+AGG | - | chr6_4:88021238-88021257 | None:intergenic | 35.0% | |
| TCTCCTTCTTGCAATTATCT+TGG | + | chr6_4:88021241-88021260 | Msa1002410:CDS | 35.0% | |
| !! | ACTGATAGTTCTGGTTTGTT+TGG | + | chr6_4:88021319-88021338 | Msa1002410:CDS | 35.0% |
| !! | TGGTTTGTTTGGTGGAAATA+TGG | + | chr6_4:88021330-88021349 | Msa1002410:CDS | 35.0% |
| TTGAAACAGTCAATACCTGA+AGG | - | chr6_4:88021456-88021475 | None:intergenic | 35.0% | |
| GATTGAACGTAATTGAGTCA+CGG | + | chr6_4:88021693-88021712 | Msa1002410:intron | 35.0% | |
| TGGAGATCTTGTGAAACTTT+AGG | - | chr6_4:88021825-88021844 | None:intergenic | 35.0% | |
| !!! | GCTACTGTTTTGATGGATAT+TGG | - | chr6_4:88021959-88021978 | None:intergenic | 35.0% |
| !! | ATTGCTAGCTACTGTTTTGA+TGG | - | chr6_4:88021966-88021985 | None:intergenic | 35.0% |
| GGTGAGACTGTGATTATAAA+GGG | - | chr6_4:88022000-88022019 | None:intergenic | 35.0% | |
| AGGTGAGACTGTGATTATAA+AGG | - | chr6_4:88022001-88022020 | None:intergenic | 35.0% | |
| ! | TCAGATTCAGATTCTGGAAA+GGG | - | chr6_4:88022154-88022173 | None:intergenic | 35.0% |
| ! | TTCAGATTCAGATTCTGGAA+AGG | - | chr6_4:88022155-88022174 | None:intergenic | 35.0% |
| ! | TCTTCCAAGTTTGAGATTTC+TGG | - | chr6_4:88022264-88022283 | None:intergenic | 35.0% |
| ! | AAGTTTTCCAACCTTGAAAG+TGG | - | chr6_4:88022289-88022308 | None:intergenic | 35.0% |
| CAGTTCTGTTTGATTATGCA+TGG | - | chr6_4:88022413-88022432 | None:intergenic | 35.0% | |
| ATATGCAGTAAGAAGAGAAG+TGG | - | chr6_4:88022498-88022517 | None:intergenic | 35.0% | |
| TGAAGAAGAAGATGAAGAAG+AGG | + | chr6_4:88022661-88022680 | Msa1002410:CDS | 35.0% | |
| TGTGAAAGAGGAAGATGATA+TGG | + | chr6_4:88022929-88022948 | Msa1002410:CDS | 35.0% | |
| GCAACTATTCCATTCAATCA+TGG | + | chr6_4:88023003-88023022 | Msa1002410:CDS | 35.0% | |
| CAGAATTCTGCAAAGCTTCT+GGG | - | chr6_4:88020730-88020749 | None:intergenic | 40.0% | |
| TCAGAATTCTGCAAAGCTTC+TGG | - | chr6_4:88020731-88020750 | None:intergenic | 40.0% | |
| AGAAGCTTTGCAGAATTCTG+AGG | + | chr6_4:88020730-88020749 | Msa1002410:CDS | 40.0% | |
| ATACTGCGAAAACCCATCAA+CGG | - | chr6_4:88021107-88021126 | None:intergenic | 40.0% | |
| ! | AGAGGTGCAACTGAATCATT+TGG | - | chr6_4:88021136-88021155 | None:intergenic | 40.0% |
| TGATTCAGTTGCACCTCTTA+TGG | + | chr6_4:88021138-88021157 | Msa1002410:CDS | 40.0% | |
| GATTCAGTTGCACCTCTTAT+GGG | + | chr6_4:88021139-88021158 | Msa1002410:CDS | 40.0% | |
| CAATCCTCTTCAAAAACAGG+TGG | - | chr6_4:88021181-88021200 | None:intergenic | 40.0% | |
| GGGTTCAAAGGAACATAAGA+AGG | - | chr6_4:88021217-88021236 | None:intergenic | 40.0% | |
| GGACCAAGATAATTGCAAGA+AGG | - | chr6_4:88021247-88021266 | None:intergenic | 40.0% | |
| GCAGTAGTAAGAGAACCATT+AGG | - | chr6_4:88021292-88021311 | None:intergenic | 40.0% | |
| GCTTTGTCTACTGATAGTTC+TGG | + | chr6_4:88021310-88021329 | Msa1002410:CDS | 40.0% | |
| !! | GATAGTTCTGGTTTGTTTGG+TGG | + | chr6_4:88021322-88021341 | Msa1002410:CDS | 40.0% |
| ATTGTCCTGATCCTATTCAG+AGG | + | chr6_4:88021413-88021432 | Msa1002410:CDS | 40.0% | |
| TTGTCCTGATCCTATTCAGA+GGG | + | chr6_4:88021414-88021433 | Msa1002410:CDS | 40.0% | |
| GTTCAACTGATTGAATCGAG+TGG | - | chr6_4:88021622-88021641 | None:intergenic | 40.0% | |
| ! | CTTTTTGCAAAAGGTCATGG+TGG | + | chr6_4:88021892-88021911 | Msa1002410:intron | 40.0% |
| TATATTGGCCAGTAGCAGAA+AGG | + | chr6_4:88022042-88022061 | Msa1002410:intron | 40.0% | |
| TTGTGATTCCTTTCTGCTAC+TGG | - | chr6_4:88022053-88022072 | None:intergenic | 40.0% | |
| !! | GCTACTAGTTGTTGATTCTC+AGG | - | chr6_4:88022213-88022232 | None:intergenic | 40.0% |
| GAGAATCAACAACTAGTAGC+TGG | + | chr6_4:88022213-88022232 | Msa1002410:CDS | 40.0% | |
| GACACCAGAAATCTCAAACT+TGG | + | chr6_4:88022257-88022276 | Msa1002410:CDS | 40.0% | |
| CGGCATGCATACTACATATT+TGG | - | chr6_4:88022548-88022567 | None:intergenic | 40.0% | |
| GATGCAAATAGAACTGCTAG+TGG | + | chr6_4:88022632-88022651 | Msa1002410:CDS | 40.0% | |
| ACTACAGGTAGTTGTGAAAG+AGG | + | chr6_4:88022917-88022936 | Msa1002410:intron | 40.0% | |
| CAGAATTCTGCAAAGCTTCT+GGG | - | chr6_4:88020730-88020749 | None:intergenic | 40.0% | |
| TCAGAATTCTGCAAAGCTTC+TGG | - | chr6_4:88020731-88020750 | None:intergenic | 40.0% | |
| AGAAGCTTTGCAGAATTCTG+AGG | + | chr6_4:88020730-88020749 | Msa1002410:CDS | 40.0% | |
| ATACTGCGAAAACCCATCAA+CGG | - | chr6_4:88021107-88021126 | None:intergenic | 40.0% | |
| ! | AGAGGTGCAACTGAATCATT+TGG | - | chr6_4:88021136-88021155 | None:intergenic | 40.0% |
| TGATTCAGTTGCACCTCTTA+TGG | + | chr6_4:88021138-88021157 | Msa1002410:CDS | 40.0% | |
| GATTCAGTTGCACCTCTTAT+GGG | + | chr6_4:88021139-88021158 | Msa1002410:CDS | 40.0% | |
| CAATCCTCTTCAAAAACAGG+TGG | - | chr6_4:88021181-88021200 | None:intergenic | 40.0% | |
| GGGTTCAAAGGAACATAAGA+AGG | - | chr6_4:88021217-88021236 | None:intergenic | 40.0% | |
| GGACCAAGATAATTGCAAGA+AGG | - | chr6_4:88021247-88021266 | None:intergenic | 40.0% | |
| GCAGTAGTAAGAGAACCATT+AGG | - | chr6_4:88021292-88021311 | None:intergenic | 40.0% | |
| GCTTTGTCTACTGATAGTTC+TGG | + | chr6_4:88021310-88021329 | Msa1002410:CDS | 40.0% | |
| !! | GATAGTTCTGGTTTGTTTGG+TGG | + | chr6_4:88021322-88021341 | Msa1002410:CDS | 40.0% |
| ATTGTCCTGATCCTATTCAG+AGG | + | chr6_4:88021413-88021432 | Msa1002410:CDS | 40.0% | |
| TTGTCCTGATCCTATTCAGA+GGG | + | chr6_4:88021414-88021433 | Msa1002410:CDS | 40.0% | |
| GTTCAACTGATTGAATCGAG+TGG | - | chr6_4:88021622-88021641 | None:intergenic | 40.0% | |
| ! | CTTTTTGCAAAAGGTCATGG+TGG | + | chr6_4:88021892-88021911 | Msa1002410:intron | 40.0% |
| TATATTGGCCAGTAGCAGAA+AGG | + | chr6_4:88022042-88022061 | Msa1002410:intron | 40.0% | |
| TTGTGATTCCTTTCTGCTAC+TGG | - | chr6_4:88022053-88022072 | None:intergenic | 40.0% | |
| !! | GCTACTAGTTGTTGATTCTC+AGG | - | chr6_4:88022213-88022232 | None:intergenic | 40.0% |
| GAGAATCAACAACTAGTAGC+TGG | + | chr6_4:88022213-88022232 | Msa1002410:CDS | 40.0% | |
| GACACCAGAAATCTCAAACT+TGG | + | chr6_4:88022257-88022276 | Msa1002410:CDS | 40.0% | |
| CGGCATGCATACTACATATT+TGG | - | chr6_4:88022548-88022567 | None:intergenic | 40.0% | |
| GATGCAAATAGAACTGCTAG+TGG | + | chr6_4:88022632-88022651 | Msa1002410:CDS | 40.0% | |
| ACTACAGGTAGTTGTGAAAG+AGG | + | chr6_4:88022917-88022936 | Msa1002410:intron | 40.0% | |
| CGAAAATTCGAGCGCTAAGA+GGG | - | chr6_4:88020685-88020704 | None:intergenic | 45.0% | |
| TCGAAAATTCGAGCGCTAAG+AGG | - | chr6_4:88020686-88020705 | None:intergenic | 45.0% | |
| GATGTGACTGGAAGGAATGA+AGG | - | chr6_4:88021010-88021029 | None:intergenic | 45.0% | |
| !! | ACTTGCTGTGATGATGTGAC+TGG | - | chr6_4:88021022-88021041 | None:intergenic | 45.0% |
| ACAGCATGTTCATCCGTTGA+TGG | + | chr6_4:88021091-88021110 | Msa1002410:CDS | 45.0% | |
| CAGCATGTTCATCCGTTGAT+GGG | + | chr6_4:88021092-88021111 | Msa1002410:CDS | 45.0% | |
| GATAAAGGAGCTCCCATAAG+AGG | - | chr6_4:88021154-88021173 | None:intergenic | 45.0% | |
| GAAGGAGAAGAAGGGTTCAA+AGG | - | chr6_4:88021229-88021248 | None:intergenic | 45.0% | |
| TGCAATTATCTTGGTCCTGC+CGG | + | chr6_4:88021250-88021269 | Msa1002410:CDS | 45.0% | |
| AACACCCTCTGAATAGGATC+AGG | - | chr6_4:88021421-88021440 | None:intergenic | 45.0% | |
| GGGTTAAACACCCTCTGAAT+AGG | - | chr6_4:88021427-88021446 | None:intergenic | 45.0% | |
| TCAATACCTGAAGGTCAGGA+GGG | - | chr6_4:88021447-88021466 | None:intergenic | 45.0% | |
| ACAGTCAATACCTGAAGGTC+AGG | - | chr6_4:88021451-88021470 | None:intergenic | 45.0% | |
| GAACTGAGAATCGACCAGTT+TGG | + | chr6_4:88021638-88021657 | Msa1002410:intron | 45.0% | |
| GACAAAACCAACTGCCAAAC+TGG | - | chr6_4:88021655-88021674 | None:intergenic | 45.0% | |
| !! | TGAGATTTCTGGTGTCAGAG+TGG | - | chr6_4:88022253-88022272 | None:intergenic | 45.0% |
| CTTGGAAGACTCCACTTTCA+AGG | + | chr6_4:88022275-88022294 | Msa1002410:CDS | 45.0% | |
| GAAGACTCCACTTTCAAGGT+TGG | + | chr6_4:88022279-88022298 | Msa1002410:CDS | 45.0% | |
| TCTAACTCGAGGTCTGCTAT+CGG | - | chr6_4:88022582-88022601 | None:intergenic | 45.0% | |
| CGAAAATTCGAGCGCTAAGA+GGG | - | chr6_4:88020685-88020704 | None:intergenic | 45.0% | |
| TCGAAAATTCGAGCGCTAAG+AGG | - | chr6_4:88020686-88020705 | None:intergenic | 45.0% | |
| GATGTGACTGGAAGGAATGA+AGG | - | chr6_4:88021010-88021029 | None:intergenic | 45.0% | |
| !! | ACTTGCTGTGATGATGTGAC+TGG | - | chr6_4:88021022-88021041 | None:intergenic | 45.0% |
| ACAGCATGTTCATCCGTTGA+TGG | + | chr6_4:88021091-88021110 | Msa1002410:CDS | 45.0% | |
| CAGCATGTTCATCCGTTGAT+GGG | + | chr6_4:88021092-88021111 | Msa1002410:CDS | 45.0% | |
| GATAAAGGAGCTCCCATAAG+AGG | - | chr6_4:88021154-88021173 | None:intergenic | 45.0% | |
| GAAGGAGAAGAAGGGTTCAA+AGG | - | chr6_4:88021229-88021248 | None:intergenic | 45.0% | |
| TGCAATTATCTTGGTCCTGC+CGG | + | chr6_4:88021250-88021269 | Msa1002410:CDS | 45.0% | |
| AACACCCTCTGAATAGGATC+AGG | - | chr6_4:88021421-88021440 | None:intergenic | 45.0% | |
| GGGTTAAACACCCTCTGAAT+AGG | - | chr6_4:88021427-88021446 | None:intergenic | 45.0% | |
| TCAATACCTGAAGGTCAGGA+GGG | - | chr6_4:88021447-88021466 | None:intergenic | 45.0% | |
| ACAGTCAATACCTGAAGGTC+AGG | - | chr6_4:88021451-88021470 | None:intergenic | 45.0% | |
| GAACTGAGAATCGACCAGTT+TGG | + | chr6_4:88021638-88021657 | Msa1002410:intron | 45.0% | |
| GACAAAACCAACTGCCAAAC+TGG | - | chr6_4:88021655-88021674 | None:intergenic | 45.0% | |
| !! | TGAGATTTCTGGTGTCAGAG+TGG | - | chr6_4:88022253-88022272 | None:intergenic | 45.0% |
| CTTGGAAGACTCCACTTTCA+AGG | + | chr6_4:88022275-88022294 | Msa1002410:CDS | 45.0% | |
| GAAGACTCCACTTTCAAGGT+TGG | + | chr6_4:88022279-88022298 | Msa1002410:CDS | 45.0% | |
| TCTAACTCGAGGTCTGCTAT+CGG | - | chr6_4:88022582-88022601 | None:intergenic | 45.0% | |
| ! | GCTGTGATGATGTGACTGGA+AGG | - | chr6_4:88021018-88021037 | None:intergenic | 50.0% |
| TTATCTTGGTCCTGCCGGTA+TGG | + | chr6_4:88021255-88021274 | Msa1002410:CDS | 50.0% | |
| ATGGCGGCATACATGCCTAA+TGG | + | chr6_4:88021274-88021293 | Msa1002410:CDS | 50.0% | |
| GTTTAACCCTCCTGACCTTC+AGG | + | chr6_4:88021438-88021457 | Msa1002410:CDS | 50.0% | |
| GTCAATACCTGAAGGTCAGG+AGG | - | chr6_4:88021448-88021467 | None:intergenic | 50.0% | |
| GAATCGACCAGTTTGGCAGT+TGG | + | chr6_4:88021645-88021664 | Msa1002410:intron | 50.0% | |
| CAACAACTAGTAGCTGGTGC+TGG | + | chr6_4:88022219-88022238 | Msa1002410:CDS | 50.0% | |
| GTATGCATGCCGCAAAACTC+TGG | + | chr6_4:88022556-88022575 | Msa1002410:intron | 50.0% | |
| ! | TGCTATCGGCCAGAGTTTTG+CGG | - | chr6_4:88022568-88022587 | None:intergenic | 50.0% |
| GATAGCAGACCTCGAGTTAG+AGG | + | chr6_4:88022581-88022600 | Msa1002410:CDS | 50.0% | |
| GCAAATCGTCCTCTAACTCG+AGG | - | chr6_4:88022593-88022612 | None:intergenic | 50.0% | |
| AACTTGGCTACTGCACCGTT+TGG | + | chr6_4:88022752-88022771 | Msa1002410:intron | 50.0% | |
| ! | GCTGTGATGATGTGACTGGA+AGG | - | chr6_4:88021018-88021037 | None:intergenic | 50.0% |
| TTATCTTGGTCCTGCCGGTA+TGG | + | chr6_4:88021255-88021274 | Msa1002410:CDS | 50.0% | |
| ATGGCGGCATACATGCCTAA+TGG | + | chr6_4:88021274-88021293 | Msa1002410:CDS | 50.0% | |
| GTTTAACCCTCCTGACCTTC+AGG | + | chr6_4:88021438-88021457 | Msa1002410:CDS | 50.0% | |
| GTCAATACCTGAAGGTCAGG+AGG | - | chr6_4:88021448-88021467 | None:intergenic | 50.0% | |
| GAATCGACCAGTTTGGCAGT+TGG | + | chr6_4:88021645-88021664 | Msa1002410:intron | 50.0% | |
| CAACAACTAGTAGCTGGTGC+TGG | + | chr6_4:88022219-88022238 | Msa1002410:CDS | 50.0% | |
| GTATGCATGCCGCAAAACTC+TGG | + | chr6_4:88022556-88022575 | Msa1002410:intron | 50.0% | |
| ! | TGCTATCGGCCAGAGTTTTG+CGG | - | chr6_4:88022568-88022587 | None:intergenic | 50.0% |
| GATAGCAGACCTCGAGTTAG+AGG | + | chr6_4:88022581-88022600 | Msa1002410:CDS | 50.0% | |
| GCAAATCGTCCTCTAACTCG+AGG | - | chr6_4:88022593-88022612 | None:intergenic | 50.0% | |
| AACTTGGCTACTGCACCGTT+TGG | + | chr6_4:88022752-88022771 | Msa1002410:intron | 50.0% | |
| AGGCATGTATGCCGCCATAC+CGG | - | chr6_4:88021272-88021291 | None:intergenic | 55.0% | |
| AGGCATGTATGCCGCCATAC+CGG | - | chr6_4:88021272-88021291 | None:intergenic | 55.0% | |
| TCTTGGTCCTGCCGGTATGG+CGG | + | chr6_4:88021258-88021277 | Msa1002410:CDS | 60.0% | |
| ATGTATGCCGCCATACCGGC+AGG | - | chr6_4:88021268-88021287 | None:intergenic | 60.0% | |
| TCTTGGTCCTGCCGGTATGG+CGG | + | chr6_4:88021258-88021277 | Msa1002410:CDS | 60.0% | |
| ATGTATGCCGCCATACCGGC+AGG | - | chr6_4:88021268-88021287 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 88020632 | 88023031 | 88020632 | ID=Msa1002410;Name=Msa1002410 |
| chr6_4 | mRNA | 88020632 | 88023031 | 88020632 | ID=Msa1002410-mRNA-1;Parent=Msa1002410;Name=Msa1002410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|415 |
| chr6_4 | exon | 88020632 | 88021459 | 88020632 | ID=Msa1002410-mRNA-1:exon:17147;Parent=Msa1002410-mRNA-1 |
| chr6_4 | exon | 88022201 | 88022386 | 88022201 | ID=Msa1002410-mRNA-1:exon:17148;Parent=Msa1002410-mRNA-1 |
| chr6_4 | exon | 88022557 | 88022682 | 88022557 | ID=Msa1002410-mRNA-1:exon:17149;Parent=Msa1002410-mRNA-1 |
| chr6_4 | exon | 88022924 | 88023031 | 88022924 | ID=Msa1002410-mRNA-1:exon:17150;Parent=Msa1002410-mRNA-1 |
| chr6_4 | CDS | 88020632 | 88021459 | 88020632 | ID=Msa1002410-mRNA-1:cds;Parent=Msa1002410-mRNA-1 |
| chr6_4 | CDS | 88022201 | 88022386 | 88022201 | ID=Msa1002410-mRNA-1:cds;Parent=Msa1002410-mRNA-1 |
| chr6_4 | CDS | 88022557 | 88022682 | 88022557 | ID=Msa1002410-mRNA-1:cds;Parent=Msa1002410-mRNA-1 |
| chr6_4 | CDS | 88022924 | 88023031 | 88022924 | ID=Msa1002410-mRNA-1:cds;Parent=Msa1002410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
