Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029920 | sp|Q9SS87|SEOB_ARATH | 29.202 | 702 | 424 | 23 | 25 | 663 | 38 | 729 | 1.83e-87 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029920 | Msa0077110 | 0.966366 | 7.965699e-126 | -8.615850e-47 |
| Msa0029920 | Msa0125170 | 0.951575 | 1.527608e-109 | -8.615850e-47 |
| Msa0029920 | Msa0169910 | 0.925108 | 2.864674e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029920 | MtrunA17_Chr1g0186861 | 94.880 | 664 | 34 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1305 |
| Msa0029920 | MtrunA17_Chr1g0186851 | 86.145 | 664 | 90 | 1 | 1 | 664 | 1 | 662 | 0.0 | 1187 |
| Msa0029920 | MtrunA17_Chr1g0186911 | 96.797 | 562 | 18 | 0 | 103 | 664 | 1 | 562 | 0.0 | 1127 |
| Msa0029920 | MtrunA17_Chr1g0187041 | 73.684 | 665 | 171 | 2 | 1 | 663 | 1 | 663 | 0.0 | 981 |
| Msa0029920 | MtrunA17_Chr1g0186841 | 58.459 | 662 | 265 | 7 | 5 | 663 | 9 | 663 | 0.0 | 781 |
| Msa0029920 | MtrunA17_Chr1g0165791 | 35.347 | 662 | 402 | 11 | 20 | 663 | 25 | 678 | 1.81e-139 | 424 |
| Msa0029920 | MtrunA17_Chr7g0226571 | 32.184 | 696 | 407 | 19 | 24 | 663 | 25 | 711 | 4.84e-104 | 332 |
| Msa0029920 | MtrunA17_Chr1g0187001 | 31.784 | 667 | 389 | 16 | 20 | 662 | 11 | 635 | 1.36e-100 | 321 |
| Msa0029920 | MtrunA17_Chr3g0116601 | 30.825 | 691 | 413 | 19 | 23 | 661 | 27 | 704 | 1.26e-96 | 312 |
| Msa0029920 | MtrunA17_Chr8g0381301 | 31.223 | 695 | 416 | 24 | 22 | 662 | 17 | 703 | 1.23e-94 | 307 |
| Msa0029920 | MtrunA17_Chr1g0186991 | 30.299 | 670 | 406 | 18 | 20 | 662 | 31 | 666 | 1.05e-93 | 303 |
| Msa0029920 | MtrunA17_Chr1g0186981 | 29.685 | 667 | 407 | 14 | 20 | 662 | 34 | 662 | 4.17e-88 | 289 |
| Msa0029920 | MtrunA17_Chr1g0186901 | 92.233 | 103 | 8 | 0 | 1 | 103 | 1 | 103 | 2.67e-60 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029920 | AT3G01680.1 | 29.202 | 702 | 424 | 23 | 25 | 663 | 38 | 729 | 1.86e-88 | 292 |
| Msa0029920 | AT3G01670.2 | 26.891 | 595 | 375 | 13 | 116 | 661 | 261 | 844 | 1.60e-56 | 206 |
| Msa0029920 | AT3G01670.1 | 26.891 | 595 | 375 | 13 | 116 | 661 | 237 | 820 | 2.55e-56 | 205 |
| Msa0029920 | AT1G67790.1 | 23.770 | 610 | 393 | 19 | 98 | 659 | 79 | 664 | 2.66e-39 | 154 |
Find 148 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATTATGGAAGTGTTTA+AGG | 0.151408 | 1_1:+55730269 | Msa0029920:CDS |
| CATTGATTCTTCTTTGGTTT+TGG | 0.159114 | 1_1:-55730854 | None:intergenic |
| AAAACACCGCTATGCAATTT+TGG | 0.175126 | 1_1:+55729693 | Msa0029920:CDS |
| TCAAACCCCGACTGAAATTA+TGG | 0.226152 | 1_1:+55730257 | Msa0029920:CDS |
| AAAATGTGGTTAACACCTTT+TGG | 0.226558 | 1_1:+55731450 | Msa0029920:CDS |
| TTGGGTCATTGATTCTTCTT+TGG | 0.230123 | 1_1:-55730860 | None:intergenic |
| CAACAATTCACCAAGTATTA+TGG | 0.234260 | 1_1:+55731353 | Msa0029920:CDS |
| CATCACTTTGCAACCATAAA+AGG | 0.238124 | 1_1:+55730697 | Msa0029920:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.255879 | 1_1:+55729833 | Msa0029920:CDS |
| GGAGGTTAACAATCTGATTA+AGG | 0.259837 | 1_1:+55729714 | Msa0029920:CDS |
| TGTTCATCAGACATGGTTAA+AGG | 0.274935 | 1_1:-55727294 | None:intergenic |
| ATTACTCTTGTGGGTTACTA+TGG | 0.276653 | 1_1:-55727183 | None:intergenic |
| CTTGAGATTCCTAATGTTGA+TGG | 0.279806 | 1_1:+55731746 | Msa0029920:CDS |
| ATTTCATATGATTCATGTTT+GGG | 0.287513 | 1_1:+55730810 | Msa0029920:CDS |
| CTGCCTAATGCTAACCATTA+TGG | 0.297378 | 1_1:-55731841 | None:intergenic |
| CTTCATTATGGCCAATGATT+TGG | 0.299452 | 1_1:-55729635 | None:intergenic |
| CATGTCTGATGAACACATTT+TGG | 0.307791 | 1_1:+55727302 | Msa0029920:CDS |
| CTCTTGAATATGGTGAGTTC+TGG | 0.316509 | 1_1:+55729578 | Msa0029920:CDS |
| AGGCAGGACTTATCTCAATT+TGG | 0.322196 | 1_1:+55730048 | Msa0029920:CDS |
| GCCAGCTCTTGCACCAGCTT+TGG | 0.325831 | 1_1:+55729807 | Msa0029920:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.325968 | 1_1:+55729834 | Msa0029920:CDS |
| TTGAGGCACTCGCTTCATTA+TGG | 0.326662 | 1_1:-55729647 | None:intergenic |
| CATTTCATATGATTCATGTT+TGG | 0.344991 | 1_1:+55730809 | Msa0029920:CDS |
| AATCAACCCACATTAGTTCT+TGG | 0.350415 | 1_1:-55730879 | None:intergenic |
| ATTCATGTTTGGGGAGTAAA+GGG | 0.351683 | 1_1:+55730820 | Msa0029920:CDS |
| AATAGTGGCATCATTTACTA+TGG | 0.358093 | 1_1:-55731378 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359855 | 1_1:-55729838 | None:intergenic |
| TTTAGTGGAACCACAATAGA+TGG | 0.364875 | 1_1:-55730325 | None:intergenic |
| ACAAGCTGTCAAACTATTCA+TGG | 0.373229 | 1_1:+55729521 | Msa0029920:CDS |
| TCATAGTTGAGATGTCTTCT+TGG | 0.373232 | 1_1:-55730540 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1_1:-55731794 | None:intergenic |
| TACTATGGCGCCATAATACT+TGG | 0.395719 | 1_1:-55731363 | None:intergenic |
| GCATTTCAAGCTGAATCCTT+TGG | 0.400511 | 1_1:+55730744 | Msa0029920:CDS |
| TTCAATTGAGTTGATTTGCT+TGG | 0.402147 | 1_1:+55731415 | Msa0029920:CDS |
| TCAAGCAAGTGTGGAGCAAT+TGG | 0.404063 | 1_1:+55727546 | Msa0029920:CDS |
| TCTGGACACTCAATAAAGTC+TGG | 0.413591 | 1_1:-55731776 | None:intergenic |
| CAGACATGGTTAAAGGGTTA+TGG | 0.416704 | 1_1:-55727287 | None:intergenic |
| GTGGAGGAATGGAATGATAA+GGG | 0.417645 | 1_1:+55730625 | Msa0029920:CDS |
| AGCTACAGGTGCTGCCATAA+TGG | 0.418677 | 1_1:+55731827 | Msa0029920:CDS |
| CATCAAACTTAGTGTCACTA+TGG | 0.419012 | 1_1:-55727347 | None:intergenic |
| AGCAATCACAATAGAACCTT+TGG | 0.422723 | 1_1:-55731585 | None:intergenic |
| TATGATCATATCCAGAAAAC+AGG | 0.424006 | 1_1:+55730571 | Msa0029920:CDS |
| CTGCCATAATGGTTAGCATT+AGG | 0.426200 | 1_1:+55731838 | Msa0029920:exon |
| TGCACTAGAATTACTCTTGT+GGG | 0.428005 | 1_1:-55727192 | None:intergenic |
| CCATGGCATCTTAGACTTCA+AGG | 0.428095 | 1_1:-55730665 | None:intergenic |
| CCACAATAGATGGGTGTTTG+TGG | 0.437219 | 1_1:-55730315 | None:intergenic |
| ATCAACCCACATTAGTTCTT+GGG | 0.438934 | 1_1:-55730878 | None:intergenic |
| GATTCATGTTTGGGGAGTAA+AGG | 0.439109 | 1_1:+55730819 | Msa0029920:CDS |
| TTGTATGCAATTTCCTCACC+TGG | 0.440380 | 1_1:-55729478 | None:intergenic |
| AGTCTTTGTCTGCTTAATAG+TGG | 0.440642 | 1_1:-55731393 | None:intergenic |
| GTTAGCATTAGGCAGCTTCA+TGG | 0.445244 | 1_1:+55731849 | Msa0029920:exon |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_1:-55730619 | None:intergenic |
| GTTCATCAGACATGGTTAAA+GGG | 0.454129 | 1_1:-55727293 | None:intergenic |
| GCATTATCGTTGATCATAGT+AGG | 0.454901 | 1_1:+55732003 | Msa0029920:three_prime_UTR |
| CACAGTTTACATTATTCAGT+TGG | 0.458366 | 1_1:-55732163 | None:intergenic |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_1:-55727401 | None:intergenic |
| ACACTTCCATAATTTCAGTC+GGG | 0.466104 | 1_1:-55730263 | None:intergenic |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.469770 | 1_1:-55729808 | None:intergenic |
| ATTGTGATTGCTGTTGGTCA+TGG | 0.472155 | 1_1:+55731596 | Msa0029920:CDS |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1_1:+55729532 | Msa0029920:CDS |
| GTTCTTGTTCATTTCAACCT+TGG | 0.474812 | 1_1:+55730510 | Msa0029920:CDS |
| TTGCAACCATAAAAGGCATC+AGG | 0.479822 | 1_1:+55730704 | Msa0029920:CDS |
| TTGTGATTGCTGTTGGTCAT+GGG | 0.479882 | 1_1:+55731597 | Msa0029920:CDS |
| AGAACCACTTGCCAAATCAT+TGG | 0.480223 | 1_1:+55729624 | Msa0029920:CDS |
| TGTGGAGGAATGGAATGATA+AGG | 0.480677 | 1_1:+55730624 | Msa0029920:CDS |
| AGCGGTGAAGTGAAGTTAGC+AGG | 0.483068 | 1_1:-55727583 | None:intergenic |
| CATTTGCAGAGTTTGACAAA+TGG | 0.486055 | 1_1:+55731636 | Msa0029920:CDS |
| GATGACACTGTCATCATTTG+TGG | 0.486509 | 1_1:+55731308 | Msa0029920:CDS |
| TGTTTCCAGCAATGTTGAAA+AGG | 0.490292 | 1_1:-55727377 | None:intergenic |
| GCATTGATATAAAGATTAAG+TGG | 0.490685 | 1_1:+55730914 | Msa0029920:CDS |
| GATTGATATCATCATTGAGT+TGG | 0.493959 | 1_1:+55729750 | Msa0029920:CDS |
| CAGATGGCATGCAAGGCTCC+AGG | 0.494131 | 1_1:+55729460 | Msa0029920:intron |
| CAACGATAATGCATGACTCT+TGG | 0.494272 | 1_1:-55731992 | None:intergenic |
| GCAGAGTTAAAACTATCAAA+TGG | 0.503065 | 1_1:-55732108 | None:intergenic |
| GCTTCATGGGTCTTTAGCAT+TGG | 0.503598 | 1_1:+55731863 | Msa0029920:three_prime_UTR |
| ACTGGGAATTGCTCCAAAGC+TGG | 0.505702 | 1_1:-55729820 | None:intergenic |
| AACACTTCCATAATTTCAGT+CGG | 0.506807 | 1_1:-55730264 | None:intergenic |
| TGGAAGTGTTTATCAGCTAC+AGG | 0.511091 | 1_1:+55731813 | Msa0029920:CDS |
| CTGAGTAACAATTGCAACAA+TGG | 0.516089 | 1_1:-55729866 | None:intergenic |
| TCTTGGCTACATCACACAAA+GGG | 0.516576 | 1_1:-55731975 | None:intergenic |
| AAATGAGTATTCAAAGCCCT+TGG | 0.526373 | 1_1:-55731675 | None:intergenic |
| TTGTGGTTCCACTAAAACAC+TGG | 0.527106 | 1_1:+55730332 | Msa0029920:CDS |
| GGTTCTATTGTGATTGCTGT+TGG | 0.527999 | 1_1:+55731590 | Msa0029920:CDS |
| CAATGACCCAAGAACTAATG+TGG | 0.529258 | 1_1:+55730872 | Msa0029920:CDS |
| AGGCATCAGGTTCATAAAAG+AGG | 0.531058 | 1_1:+55730717 | Msa0029920:CDS |
| TCACAAATCACTATACAGAT+TGG | 0.534352 | 1_1:+55730114 | Msa0029920:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.536453 | 1_1:-55730620 | None:intergenic |
| GTGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_1:+55731327 | Msa0029920:CDS |
| CTGGACACTCAATAAAGTCT+GGG | 0.551291 | 1_1:-55731775 | None:intergenic |
| CAAAATGTGTTCATCAGACA+TGG | 0.554726 | 1_1:-55727301 | None:intergenic |
| GCGGTGAAGTGAAGTTAGCA+GGG | 0.555690 | 1_1:-55727582 | None:intergenic |
| ATGGCCAATGATTTGGCAAG+TGG | 0.556193 | 1_1:-55729628 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1_1:+55730082 | Msa0029920:CDS |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_1:+55730614 | Msa0029920:CDS |
| TTAGCATTAGGCAGCTTCAT+GGG | 0.566452 | 1_1:+55731850 | Msa0029920:exon |
| CAACTCACGTCACGACATCA+AGG | 0.567567 | 1_1:+55729780 | Msa0029920:CDS |
| CATTGATATAAAGATTAAGT+GGG | 0.567772 | 1_1:+55730915 | Msa0029920:CDS |
| AAAGATGTGGTGAGCACCAA+GGG | 0.568763 | 1_1:+55731659 | Msa0029920:CDS |
| TTTGAAGAAAATCAATTCTG+AGG | 0.569533 | 1_1:+55727612 | Msa0029920:CDS |
| GTGCACTAGAATTACTCTTG+TGG | 0.570358 | 1_1:-55727193 | None:intergenic |
| GTCTTCTTGGCAGATGTCCA+AGG | 0.571060 | 1_1:-55730527 | None:intergenic |
| CATCAACATTAGGAATCTCA+AGG | 0.576608 | 1_1:-55731745 | None:intergenic |
| CACTTCCATAATTTCAGTCG+GGG | 0.578548 | 1_1:-55730262 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1_1:-55727242 | None:intergenic |
| GATTCAGGTTTAGTGAGTTG+AGG | 0.580085 | 1_1:-55729664 | None:intergenic |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_1:-55730597 | None:intergenic |
| CATTTGTGGAGGTAAAGATA+AGG | 0.582924 | 1_1:+55731322 | Msa0029920:CDS |
| CCTTGAAGTCTAAGATGCCA+TGG | 0.584604 | 1_1:+55730665 | Msa0029920:CDS |
| CAAGCTGTCAAACTATTCAT+GGG | 0.585743 | 1_1:+55729522 | Msa0029920:CDS |
| TCACGAATGCAACTAAAAGA+AGG | 0.586356 | 1_1:+55732027 | Msa0029920:three_prime_UTR |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_1:+55730606 | Msa0029920:CDS |
| CACAAAGTTATCAACAACAT+GGG | 0.594338 | 1_1:-55727415 | None:intergenic |
| CCACAAACACCCATCTATTG+TGG | 0.594377 | 1_1:+55730315 | Msa0029920:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.596089 | 1_1:+55730593 | Msa0029920:CDS |
| AATGTGGGTTGATTCCGTGC+TGG | 0.599556 | 1_1:+55730888 | Msa0029920:CDS |
| GCACAAAGTTATCAACAACA+TGG | 0.600378 | 1_1:-55727416 | None:intergenic |
| TTAGTGGAACCACAATAGAT+GGG | 0.601002 | 1_1:-55730324 | None:intergenic |
| TGGGTTGATTCCGTGCTGGT+TGG | 0.605127 | 1_1:+55730892 | Msa0029920:CDS |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1_1:+55727246 | Msa0029920:CDS |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.610349 | 1_1:-55729619 | None:intergenic |
| CTCTTGGCTACATCACACAA+AGG | 0.612383 | 1_1:-55731976 | None:intergenic |
| GGAGTCTCAACAACAAAATG+TGG | 0.614411 | 1_1:+55731436 | Msa0029920:CDS |
| TATATCAATGCCAACCAGCA+CGG | 0.619216 | 1_1:-55730902 | None:intergenic |
| GGGTGGGCAATTGTAACCAA+AGG | 0.622664 | 1_1:+55731569 | Msa0029920:CDS |
| TTTCATATGATTCATGTTTG+GGG | 0.624357 | 1_1:+55730811 | Msa0029920:CDS |
| AATGACCCAAGAACTAATGT+GGG | 0.624567 | 1_1:+55730873 | Msa0029920:CDS |
| ACATGAATATCAAGCAAGTG+TGG | 0.629780 | 1_1:+55727537 | Msa0029920:CDS |
| GGCATGCAAGGCTCCAGGTG+AGG | 0.630978 | 1_1:+55729465 | Msa0029920:CDS |
| AGGAATGGAATGATAAGGGG+AGG | 0.635212 | 1_1:+55730629 | Msa0029920:CDS |
| ATGGTGGCAGATGGCATGCA+AGG | 0.637627 | 1_1:+55729453 | Msa0029920:intron |
| TGGAGGAATGGAATGATAAG+GGG | 0.637916 | 1_1:+55730626 | Msa0029920:CDS |
| ACAATCTGATTAAGGCAACA+TGG | 0.639246 | 1_1:+55729722 | Msa0029920:CDS |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1_1:+55731793 | Msa0029920:CDS |
| GAAAGATGTGGTGAGCACCA+AGG | 0.642800 | 1_1:+55731658 | Msa0029920:CDS |
| GACACTGTCATCATTTGTGG+AGG | 0.653594 | 1_1:+55731311 | Msa0029920:CDS |
| AAGTGATGCAACACATACCA+TGG | 0.654990 | 1_1:-55730682 | None:intergenic |
| CGGTGAAGTGAAGTTAGCAG+GGG | 0.658379 | 1_1:-55727581 | None:intergenic |
| GTTGTTGTGTTGAGTACACA+AGG | 0.659541 | 1_1:+55730766 | Msa0029920:CDS |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1_1:-55729837 | None:intergenic |
| GTACTCAACACAACAACCAA+AGG | 0.668954 | 1_1:-55730760 | None:intergenic |
| CTTGGCTACATCACACAAAG+GGG | 0.672326 | 1_1:-55731974 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.674200 | 1_1:+55730594 | Msa0029920:CDS |
| TGATAAACACTTCCATTGTG+CGG | 0.679237 | 1_1:-55731805 | None:intergenic |
| AAACTTACGAATCAGTAGTG+AGG | 0.684196 | 1_1:-55729897 | None:intergenic |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_1:+55730609 | Msa0029920:CDS |
| GTTTGACAAATGGAAAGATG+TGG | 0.704359 | 1_1:+55731646 | Msa0029920:CDS |
| GGTGAAGTGAAGTTAGCAGG+GGG | 0.723578 | 1_1:-55727580 | None:intergenic |
| TAACCTCCAAAATTGCATAG+CGG | 0.752415 | 1_1:-55729699 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACTATTACAAAA+TGG | - | chr1_1:55728111-55728130 | None:intergenic | 10.0% |
| !!! | CAAATTTTTTATTTTTCTTT+TGG | + | chr1_1:55728539-55728558 | Msa0029920:intron | 10.0% |
| !!! | TTACTAAAGATTTTTTTTTA+GGG | - | chr1_1:55728920-55728939 | None:intergenic | 10.0% |
| !! | ATAAAGTTAAAAATATTACA+GGG | - | chr1_1:55729389-55729408 | None:intergenic | 10.0% |
| !! | TATAAAGTTAAAAATATTAC+AGG | - | chr1_1:55729390-55729409 | None:intergenic | 10.0% |
| !! | TACTAAAGAAAAAAAGTTAT+GGG | - | chr1_1:55728896-55728915 | None:intergenic | 15.0% |
| !! | ATACTAAAGAAAAAAAGTTA+TGG | - | chr1_1:55728897-55728916 | None:intergenic | 15.0% |
| !!! | GTTACTAAAGATTTTTTTTT+AGG | - | chr1_1:55728921-55728940 | None:intergenic | 15.0% |
| !! | TTCCATAAAAATCATATAAA+TGG | + | chr1_1:55728963-55728982 | Msa0029920:intron | 15.0% |
| !!! | TTTTTTTAGAGGAATATAAA+TGG | + | chr1_1:55728991-55729010 | Msa0029920:intron | 15.0% |
| !!! | TTTTAATTATGTGCTTATTT+GGG | - | chr1_1:55729184-55729203 | None:intergenic | 15.0% |
| !!! | TTTTTAATTATGTGCTTATT+TGG | - | chr1_1:55729185-55729204 | None:intergenic | 15.0% |
| !! | AATGAATATTGGAAAATTAA+AGG | + | chr1_1:55729347-55729366 | Msa0029920:intron | 15.0% |
| !!! | TTTAACTTTATATAAAGGTT+TGG | + | chr1_1:55729398-55729417 | Msa0029920:intron | 15.0% |
| !!! | TGAATGTTTTATATTTAAAC+AGG | + | chr1_1:55730456-55730475 | Msa0029920:intron | 15.0% |
| !! | TTTATACTATTATTAGTACA+TGG | - | chr1_1:55731029-55731048 | None:intergenic | 15.0% |
| !! | AATATAGGTAAATATTACTT+TGG | - | chr1_1:55731119-55731138 | None:intergenic | 15.0% |
| !!! | TTAACTTGTTTGTTTATTAC+AGG | + | chr1_1:55727513-55727532 | Msa0029920:intron | 20.0% |
| !!! | TAACTTGTTTGTTTATTACA+GGG | + | chr1_1:55727514-55727533 | Msa0029920:intron | 20.0% |
| !!! | AAAATGTGTGTTTTATTTAG+AGG | + | chr1_1:55727854-55727873 | Msa0029920:intron | 20.0% |
| !!! | TCTTTTAAATTGTGATAAAC+AGG | - | chr1_1:55728184-55728203 | None:intergenic | 20.0% |
| !!! | AGAAAAACATTTTCTATAAC+TGG | + | chr1_1:55728274-55728293 | Msa0029920:intron | 20.0% |
| !!! | AAAAGAGCTTATATTCTTTT+TGG | - | chr1_1:55728443-55728462 | None:intergenic | 20.0% |
| !!! | CTCATTAACTTTTTTTCTTT+AGG | + | chr1_1:55728799-55728818 | Msa0029920:intron | 20.0% |
| !!! | GACCATTTATATGATTTTTA+TGG | - | chr1_1:55728968-55728987 | None:intergenic | 20.0% |
| !! | AGCTATTTATGTAATAACTT+AGG | + | chr1_1:55729024-55729043 | Msa0029920:intron | 20.0% |
| !!! | TTACTAACCTTTTTTTTAAC+AGG | + | chr1_1:55730019-55730038 | Msa0029920:intron | 20.0% |
| !!! | TACTAACCTTTTTTTTAACA+GGG | + | chr1_1:55730020-55730039 | Msa0029920:intron | 20.0% |
| !! | AAAATAATTTCCTTCAGTAT+GGG | - | chr1_1:55730190-55730209 | None:intergenic | 20.0% |
| !! | TAAAATAATTTCCTTCAGTA+TGG | - | chr1_1:55730191-55730210 | None:intergenic | 20.0% |
| !! | ATTTCATATGATTCATGTTT+GGG | + | chr1_1:55730810-55730829 | Msa0029920:CDS | 20.0% |
| !! | CATTGATATAAAGATTAAGT+GGG | + | chr1_1:55730915-55730934 | Msa0029920:CDS | 20.0% |
| !! | GTAAATATTACTTTGGATTT+AGG | - | chr1_1:55731112-55731131 | None:intergenic | 20.0% |
| !! | ATAATTATGTCTCACAATAT+AGG | - | chr1_1:55731134-55731153 | None:intergenic | 20.0% |
| !!! | CTTTTTTCTCTGAATCAATA+TGG | + | chr1_1:55727215-55727234 | Msa0029920:exon | 25.0% |
| ! | TAAAAAAAGAACGTAGAGAT+AGG | - | chr1_1:55727461-55727480 | None:intergenic | 25.0% |
| ! | TTTGAAGAAAATCAATTCTG+AGG | + | chr1_1:55727612-55727631 | Msa0029920:CDS | 25.0% |
| ! | TTTACATGTAGTTTAGCATA+TGG | - | chr1_1:55727660-55727679 | None:intergenic | 25.0% |
| !!! | TATTTTTGGTACAAATCATG+TGG | + | chr1_1:55727728-55727747 | Msa0029920:intron | 25.0% |
| !! | CTTTTTGGATAGATTAATCT+TGG | - | chr1_1:55728428-55728447 | None:intergenic | 25.0% |
| !!! | AGACACTCATGATTTTTTTT+TGG | - | chr1_1:55728626-55728645 | None:intergenic | 25.0% |
| ! | TAACAAACTCATGATTTACA+GGG | - | chr1_1:55728864-55728883 | None:intergenic | 25.0% |
| !!! | AAATGGTCGATTTTTTTTAG+AGG | + | chr1_1:55728980-55728999 | Msa0029920:intron | 25.0% |
| ! | TTGTTGTATACTTTATATGC+AGG | - | chr1_1:55729069-55729088 | None:intergenic | 25.0% |
| ! | TAATCCCACGAATATAATAT+TGG | + | chr1_1:55729215-55729234 | Msa0029920:intron | 25.0% |
| ! | TGACAATGTTGAATGAATAT+TGG | + | chr1_1:55729336-55729355 | Msa0029920:intron | 25.0% |
| ! | TGCACATTGTATATGAATAA+CGG | + | chr1_1:55729421-55729440 | Msa0029920:intron | 25.0% |
| !! | ACCTTTTACATAATCTAAGT+TGG | + | chr1_1:55729972-55729991 | Msa0029920:intron | 25.0% |
| !!! | TGAAATTATGGAAGTGTTTA+AGG | + | chr1_1:55730269-55730288 | Msa0029920:CDS | 25.0% |
| !!! | CTTCACTTTTTAATCTAGTT+TGG | + | chr1_1:55730431-55730450 | Msa0029920:intron | 25.0% |
| ! | CATTTCATATGATTCATGTT+TGG | + | chr1_1:55730809-55730828 | Msa0029920:CDS | 25.0% |
| ! | TTTCATATGATTCATGTTTG+GGG | + | chr1_1:55730811-55730830 | Msa0029920:CDS | 25.0% |
| !! | GCATTGATATAAAGATTAAG+TGG | + | chr1_1:55730914-55730933 | Msa0029920:CDS | 25.0% |
| ! | TCTGATAATATTACATCATG+TGG | + | chr1_1:55731077-55731096 | Msa0029920:intron | 25.0% |
| !! | ATTTCCTTTGAAAAATGAAG+AGG | + | chr1_1:55731282-55731301 | Msa0029920:intron | 25.0% |
| !! | TTTCCTTTGAAAAATGAAGA+GGG | + | chr1_1:55731283-55731302 | Msa0029920:intron | 25.0% |
| ! | TTTCATACAAAAATGAGTCA+GGG | + | chr1_1:55731549-55731568 | Msa0029920:CDS | 25.0% |
| ! | AAGATTTTGTGTGTTTTGTC+TGG | - | chr1_1:55727153-55727172 | None:intergenic | 30.0% |
| CACAAAGTTATCAACAACAT+GGG | - | chr1_1:55727418-55727437 | None:intergenic | 30.0% | |
| ! | ATTTTCTTCAAAGTACACAG+CGG | - | chr1_1:55727604-55727623 | None:intergenic | 30.0% |
| ! | AAAGAAAGTGTGTAACAAGT+AGG | + | chr1_1:55728067-55728086 | Msa0029920:intron | 30.0% |
| !! | AGAGAGATCAGTTTGTTATT+AGG | - | chr1_1:55728377-55728396 | None:intergenic | 30.0% |
| TGAGCTAAGAGAAAAAAAGT+TGG | - | chr1_1:55728725-55728744 | None:intergenic | 30.0% | |
| AACAAACTCATGGGATTATA+GGG | - | chr1_1:55728769-55728788 | None:intergenic | 30.0% | |
| TAACAAACTCATGGGATTAT+AGG | - | chr1_1:55728770-55728789 | None:intergenic | 30.0% | |
| CAATGTTGTAACAAACTCAT+GGG | - | chr1_1:55728778-55728797 | None:intergenic | 30.0% | |
| TCAATGTTGTAACAAACTCA+TGG | - | chr1_1:55728779-55728798 | None:intergenic | 30.0% | |
| GTAACAAACTCATGATTTAC+AGG | - | chr1_1:55728865-55728884 | None:intergenic | 30.0% | |
| !! | AGTGTTTGAAGTCATTTTGA+AGG | - | chr1_1:55729123-55729142 | None:intergenic | 30.0% |
| !! | TCAAAAGTGTTTGATGTCAT+GGG | - | chr1_1:55729156-55729175 | None:intergenic | 30.0% |
| !! | ATCAAAAGTGTTTGATGTCA+TGG | - | chr1_1:55729157-55729176 | None:intergenic | 30.0% |
| AATTATGTGCTTATTTGGGA+AGG | - | chr1_1:55729180-55729199 | None:intergenic | 30.0% | |
| GTGTCCAATATTATATTCGT+GGG | - | chr1_1:55729222-55729241 | None:intergenic | 30.0% | |
| AGTGTCCAATATTATATTCG+TGG | - | chr1_1:55729223-55729242 | None:intergenic | 30.0% | |
| TAGATAGTAATGTGCTAGAT+CGG | + | chr1_1:55729278-55729297 | Msa0029920:intron | 30.0% | |
| TGAATAACGGTATTGTATGA+TGG | + | chr1_1:55729434-55729453 | Msa0029920:intron | 30.0% | |
| GATTGATATCATCATTGAGT+TGG | + | chr1_1:55729750-55729769 | Msa0029920:CDS | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | + | chr1_1:55729833-55729852 | Msa0029920:CDS | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | + | chr1_1:55729834-55729853 | Msa0029920:CDS | 30.0% |
| TAACCCAATATACATCAACT+GGG | - | chr1_1:55729840-55729859 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | - | chr1_1:55729841-55729860 | None:intergenic | 30.0% | |
| GCCAACTTAGATTATGTAAA+AGG | - | chr1_1:55729976-55729995 | None:intergenic | 30.0% | |
| TCTCTTCCCTGTTAAAAAAA+AGG | - | chr1_1:55730029-55730048 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAACAGGGAAGAG+AGG | + | chr1_1:55730028-55730047 | Msa0029920:intron | 30.0% |
| ACATCATAATCAGCAAATTG+AGG | + | chr1_1:55730082-55730101 | Msa0029920:CDS | 30.0% | |
| TCACAAATCACTATACAGAT+TGG | + | chr1_1:55730114-55730133 | Msa0029920:CDS | 30.0% | |
| ! | ATATTTTCTTCCCATACTGA+AGG | + | chr1_1:55730177-55730196 | Msa0029920:intron | 30.0% |
| AACACTTCCATAATTTCAGT+CGG | - | chr1_1:55730267-55730286 | None:intergenic | 30.0% | |
| CATTGATGTGTTGAAAAAGA+AGG | + | chr1_1:55730483-55730502 | Msa0029920:CDS | 30.0% | |
| TATGATCATATCCAGAAAAC+AGG | + | chr1_1:55730571-55730590 | Msa0029920:CDS | 30.0% | |
| !!! | CATTGATTCTTCTTTGGTTT+TGG | - | chr1_1:55730857-55730876 | None:intergenic | 30.0% |
| CTAGTCAACAATAAAGAGAA+TGG | - | chr1_1:55731219-55731238 | None:intergenic | 30.0% | |
| CAACAATTCACCAAGTATTA+TGG | + | chr1_1:55731353-55731372 | Msa0029920:CDS | 30.0% | |
| AATAGTGGCATCATTTACTA+TGG | - | chr1_1:55731381-55731400 | None:intergenic | 30.0% | |
| !! | TTCAATTGAGTTGATTTGCT+TGG | + | chr1_1:55731415-55731434 | Msa0029920:CDS | 30.0% |
| ! | AAAATGTGGTTAACACCTTT+TGG | + | chr1_1:55731450-55731469 | Msa0029920:CDS | 30.0% |
| CTTTCATACAAAAATGAGTC+AGG | + | chr1_1:55731548-55731567 | Msa0029920:CDS | 30.0% | |
| GCAGAGTTAAAACTATCAAA+TGG | - | chr1_1:55732111-55732130 | None:intergenic | 30.0% | |
| ! | ATTACTCTTGTGGGTTACTA+TGG | - | chr1_1:55727186-55727205 | None:intergenic | 35.0% |
| TGCACTAGAATTACTCTTGT+GGG | - | chr1_1:55727195-55727214 | None:intergenic | 35.0% | |
| GTTCATCAGACATGGTTAAA+GGG | - | chr1_1:55727296-55727315 | None:intergenic | 35.0% | |
| TGTTCATCAGACATGGTTAA+AGG | - | chr1_1:55727297-55727316 | None:intergenic | 35.0% | |
| CAAAATGTGTTCATCAGACA+TGG | - | chr1_1:55727304-55727323 | None:intergenic | 35.0% | |
| ! | CATGTCTGATGAACACATTT+TGG | + | chr1_1:55727302-55727321 | Msa0029920:CDS | 35.0% |
| ! | CATCAAACTTAGTGTCACTA+TGG | - | chr1_1:55727350-55727369 | None:intergenic | 35.0% |
| ! | GAATACCTTTTCAACATTGC+TGG | + | chr1_1:55727372-55727391 | Msa0029920:CDS | 35.0% |
| TGTTTCCAGCAATGTTGAAA+AGG | - | chr1_1:55727380-55727399 | None:intergenic | 35.0% | |
| GCACAAAGTTATCAACAACA+TGG | - | chr1_1:55727419-55727438 | None:intergenic | 35.0% | |
| ACATGAATATCAAGCAAGTG+TGG | + | chr1_1:55727537-55727556 | Msa0029920:CDS | 35.0% | |
| ! | TTGTGACTGAAGAGAGATTT+TGG | + | chr1_1:55727769-55727788 | Msa0029920:intron | 35.0% |
| ! | TGTGACTGAAGAGAGATTTT+GGG | + | chr1_1:55727770-55727789 | Msa0029920:intron | 35.0% |
| AAAGTGTGTAACAAGTAGGA+CGG | + | chr1_1:55728071-55728090 | Msa0029920:intron | 35.0% | |
| !!! | GGTGGTTTTGAGTTCAAATT+TGG | - | chr1_1:55728704-55728723 | None:intergenic | 35.0% |
| GCTAAGAGAAAAAAAGTTGG+TGG | - | chr1_1:55728722-55728741 | None:intergenic | 35.0% | |
| ACAAACTCATGGGATTATAG+GGG | - | chr1_1:55728768-55728787 | None:intergenic | 35.0% | |
| !! | AGTCATTTTGAAGGAAAGAG+AGG | - | chr1_1:55729114-55729133 | None:intergenic | 35.0% |
| ! | CTATTTCTTTCTCTCTCAAG+AGG | - | chr1_1:55729261-55729280 | None:intergenic | 35.0% |
| ATAACGGTATTGTATGATGG+TGG | + | chr1_1:55729437-55729456 | Msa0029920:intron | 35.0% | |
| ACAAGCTGTCAAACTATTCA+TGG | + | chr1_1:55729521-55729540 | Msa0029920:CDS | 35.0% | |
| CAAGCTGTCAAACTATTCAT+GGG | + | chr1_1:55729522-55729541 | Msa0029920:CDS | 35.0% | |
| ! | AACTATTCATGGGTTGCAAA+AGG | + | chr1_1:55729532-55729551 | Msa0029920:CDS | 35.0% |
| !! | TCTGCTTTTGCTCTTGAATA+TGG | + | chr1_1:55729568-55729587 | Msa0029920:CDS | 35.0% |
| CTTCATTATGGCCAATGATT+TGG | - | chr1_1:55729638-55729657 | None:intergenic | 35.0% | |
| ! | AAAACACCGCTATGCAATTT+TGG | + | chr1_1:55729693-55729712 | Msa0029920:CDS | 35.0% |
| TAACCTCCAAAATTGCATAG+CGG | - | chr1_1:55729702-55729721 | None:intergenic | 35.0% | |
| GGAGGTTAACAATCTGATTA+AGG | + | chr1_1:55729714-55729733 | Msa0029920:CDS | 35.0% | |
| ACAATCTGATTAAGGCAACA+TGG | + | chr1_1:55729722-55729741 | Msa0029920:CDS | 35.0% | |
| CTGAGTAACAATTGCAACAA+TGG | - | chr1_1:55729869-55729888 | None:intergenic | 35.0% | |
| AAACTTACGAATCAGTAGTG+AGG | - | chr1_1:55729900-55729919 | None:intergenic | 35.0% | |
| ACACTTCCATAATTTCAGTC+GGG | - | chr1_1:55730266-55730285 | None:intergenic | 35.0% | |
| !!! | TGTTTAAGGTGCTGATTTTC+TGG | + | chr1_1:55730283-55730302 | Msa0029920:CDS | 35.0% |
| TTAGTGGAACCACAATAGAT+GGG | - | chr1_1:55730327-55730346 | None:intergenic | 35.0% | |
| TTTAGTGGAACCACAATAGA+TGG | - | chr1_1:55730328-55730347 | None:intergenic | 35.0% | |
| !! | AACACTAACCAGTGTTTTAG+TGG | - | chr1_1:55730343-55730362 | None:intergenic | 35.0% |
| GTTCTTGTTCATTTCAACCT+TGG | + | chr1_1:55730510-55730529 | Msa0029920:CDS | 35.0% | |
| TCATAGTTGAGATGTCTTCT+TGG | - | chr1_1:55730543-55730562 | None:intergenic | 35.0% | |
| CATCACTTTGCAACCATAAA+AGG | + | chr1_1:55730697-55730716 | Msa0029920:CDS | 35.0% | |
| ! | TATGAACCTGATGCCTTTTA+TGG | - | chr1_1:55730713-55730732 | None:intergenic | 35.0% |
| ATTCATGTTTGGGGAGTAAA+GGG | + | chr1_1:55730820-55730839 | Msa0029920:CDS | 35.0% | |
| !!! | CTTCTTTGGTTTTGGTGAAA+GGG | - | chr1_1:55730849-55730868 | None:intergenic | 35.0% |
| !!! | TCTTCTTTGGTTTTGGTGAA+AGG | - | chr1_1:55730850-55730869 | None:intergenic | 35.0% |
| !! | TTGGGTCATTGATTCTTCTT+TGG | - | chr1_1:55730863-55730882 | None:intergenic | 35.0% |
| AATGACCCAAGAACTAATGT+GGG | + | chr1_1:55730873-55730892 | Msa0029920:CDS | 35.0% | |
| ! | ATCAACCCACATTAGTTCTT+GGG | - | chr1_1:55730881-55730900 | None:intergenic | 35.0% |
| ! | AATCAACCCACATTAGTTCT+TGG | - | chr1_1:55730882-55730901 | None:intergenic | 35.0% |
| AGATTAAGTGGGTAAGTGTT+TGG | + | chr1_1:55730926-55730945 | Msa0029920:intron | 35.0% | |
| CATTTGTGGAGGTAAAGATA+AGG | + | chr1_1:55731322-55731341 | Msa0029920:CDS | 35.0% | |
| AGTCTTTGTCTGCTTAATAG+TGG | - | chr1_1:55731396-55731415 | None:intergenic | 35.0% | |
| !! | GGTTAACACCTTTTGGAAAA+AGG | + | chr1_1:55731457-55731476 | Msa0029920:CDS | 35.0% |
| ! | ACTCTCTACCTTTTTCCAAA+AGG | - | chr1_1:55731468-55731487 | None:intergenic | 35.0% |
| !! | GTTTGTTTTCTCATGCATCT+TGG | - | chr1_1:55731501-55731520 | None:intergenic | 35.0% |
| ATACAAAAATGAGTCAGGGT+GGG | + | chr1_1:55731553-55731572 | Msa0029920:CDS | 35.0% | |
| AGCAATCACAATAGAACCTT+TGG | - | chr1_1:55731588-55731607 | None:intergenic | 35.0% | |
| GTTTGACAAATGGAAAGATG+TGG | + | chr1_1:55731646-55731665 | Msa0029920:CDS | 35.0% | |
| AAATGAGTATTCAAAGCCCT+TGG | - | chr1_1:55731678-55731697 | None:intergenic | 35.0% | |
| CATCAACATTAGGAATCTCA+AGG | - | chr1_1:55731748-55731767 | None:intergenic | 35.0% | |
| CTTGAGATTCCTAATGTTGA+TGG | + | chr1_1:55731746-55731765 | Msa0029920:CDS | 35.0% | |
| ! | GGGATTTTTCCATCAACATT+AGG | - | chr1_1:55731758-55731777 | None:intergenic | 35.0% |
| TGATAAACACTTCCATTGTG+CGG | - | chr1_1:55731808-55731827 | None:intergenic | 35.0% | |
| ! | GCATTTTCTTCTAAGTTCTG+TGG | + | chr1_1:55731912-55731931 | Msa0029920:three_prime_UTR | 35.0% |
| GCATTATCGTTGATCATAGT+AGG | + | chr1_1:55732003-55732022 | Msa0029920:three_prime_UTR | 35.0% | |
| TCACGAATGCAACTAAAAGA+AGG | + | chr1_1:55732027-55732046 | Msa0029920:three_prime_UTR | 35.0% | |
| GTGCACTAGAATTACTCTTG+TGG | - | chr1_1:55727196-55727215 | None:intergenic | 40.0% | |
| TGTGAATAAGTGATCGCACT+AGG | - | chr1_1:55727245-55727264 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | + | chr1_1:55727246-55727265 | Msa0029920:CDS | 40.0% | |
| CAGACATGGTTAAAGGGTTA+TGG | - | chr1_1:55727290-55727309 | None:intergenic | 40.0% | |
| AAGTGTGTAACAAGTAGGAC+GGG | + | chr1_1:55728072-55728091 | Msa0029920:intron | 40.0% | |
| CAAACTCATGGGATTATAGG+GGG | - | chr1_1:55728767-55728786 | None:intergenic | 40.0% | |
| TGTGTAGCTCAAATGGTTTG+AGG | - | chr1_1:55728841-55728860 | None:intergenic | 40.0% | |
| !! | TATTGTATGATGGTGGCAGA+TGG | + | chr1_1:55729444-55729463 | Msa0029920:intron | 40.0% |
| TTGTATGCAATTTCCTCACC+TGG | - | chr1_1:55729481-55729500 | None:intergenic | 40.0% | |
| CTCTTGAATATGGTGAGTTC+TGG | + | chr1_1:55729578-55729597 | Msa0029920:CDS | 40.0% | |
| AGAACCACTTGCCAAATCAT+TGG | + | chr1_1:55729624-55729643 | Msa0029920:CDS | 40.0% | |
| ! | GATTCAGGTTTAGTGAGTTG+AGG | - | chr1_1:55729667-55729686 | None:intergenic | 40.0% |
| AGGCAGGACTTATCTCAATT+TGG | + | chr1_1:55730048-55730067 | Msa0029920:CDS | 40.0% | |
| TCAAACCCCGACTGAAATTA+TGG | + | chr1_1:55730257-55730276 | Msa0029920:CDS | 40.0% | |
| CACTTCCATAATTTCAGTCG+GGG | - | chr1_1:55730265-55730284 | None:intergenic | 40.0% | |
| TTGTGGTTCCACTAAAACAC+TGG | + | chr1_1:55730332-55730351 | Msa0029920:CDS | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | + | chr1_1:55730594-55730613 | Msa0029920:CDS | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | - | chr1_1:55730622-55730641 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | - | chr1_1:55730623-55730642 | None:intergenic | 40.0% | |
| TGTGGAGGAATGGAATGATA+AGG | + | chr1_1:55730624-55730643 | Msa0029920:CDS | 40.0% | |
| GTGGAGGAATGGAATGATAA+GGG | + | chr1_1:55730625-55730644 | Msa0029920:CDS | 40.0% | |
| TGGAGGAATGGAATGATAAG+GGG | + | chr1_1:55730626-55730645 | Msa0029920:CDS | 40.0% | |
| AAGTGATGCAACACATACCA+TGG | - | chr1_1:55730685-55730704 | None:intergenic | 40.0% | |
| !! | TTGCAACCATAAAAGGCATC+AGG | + | chr1_1:55730704-55730723 | Msa0029920:CDS | 40.0% |
| AGGCATCAGGTTCATAAAAG+AGG | + | chr1_1:55730717-55730736 | Msa0029920:CDS | 40.0% | |
| GCATTTCAAGCTGAATCCTT+TGG | + | chr1_1:55730744-55730763 | Msa0029920:CDS | 40.0% | |
| GTACTCAACACAACAACCAA+AGG | - | chr1_1:55730763-55730782 | None:intergenic | 40.0% | |
| GTTGTTGTGTTGAGTACACA+AGG | + | chr1_1:55730766-55730785 | Msa0029920:CDS | 40.0% | |
| GATTCATGTTTGGGGAGTAA+AGG | + | chr1_1:55730819-55730838 | Msa0029920:CDS | 40.0% | |
| CAATGACCCAAGAACTAATG+TGG | + | chr1_1:55730872-55730891 | Msa0029920:CDS | 40.0% | |
| TATATCAATGCCAACCAGCA+CGG | - | chr1_1:55730905-55730924 | None:intergenic | 40.0% | |
| TAAGTGGGTAAGTGTTTGGT+TGG | + | chr1_1:55730930-55730949 | Msa0029920:intron | 40.0% | |
| !! | CCTCCCTCTTCATTTTTCAA+AGG | - | chr1_1:55731289-55731308 | None:intergenic | 40.0% |
| ! | CCTTTGAAAAATGAAGAGGG+AGG | + | chr1_1:55731286-55731305 | Msa0029920:intron | 40.0% |
| GATGACACTGTCATCATTTG+TGG | + | chr1_1:55731308-55731327 | Msa0029920:CDS | 40.0% | |
| GTGGAGGTAAAGATAAGGAA+TGG | + | chr1_1:55731327-55731346 | Msa0029920:CDS | 40.0% | |
| TACTATGGCGCCATAATACT+TGG | - | chr1_1:55731366-55731385 | None:intergenic | 40.0% | |
| GGAGTCTCAACAACAAAATG+TGG | + | chr1_1:55731436-55731455 | Msa0029920:CDS | 40.0% | |
| CATACAAAAATGAGTCAGGG+TGG | + | chr1_1:55731552-55731571 | Msa0029920:CDS | 40.0% | |
| GGTTCTATTGTGATTGCTGT+TGG | + | chr1_1:55731590-55731609 | Msa0029920:CDS | 40.0% | |
| ! | ATTGTGATTGCTGTTGGTCA+TGG | + | chr1_1:55731596-55731615 | Msa0029920:CDS | 40.0% |
| ! | TTGTGATTGCTGTTGGTCAT+GGG | + | chr1_1:55731597-55731616 | Msa0029920:CDS | 40.0% |
| CTGGACACTCAATAAAGTCT+GGG | - | chr1_1:55731778-55731797 | None:intergenic | 40.0% | |
| TCTGGACACTCAATAAAGTC+TGG | - | chr1_1:55731779-55731798 | None:intergenic | 40.0% | |
| !! | TGGAAGTGTTTATCAGCTAC+AGG | + | chr1_1:55731813-55731832 | Msa0029920:CDS | 40.0% |
| CTGCCATAATGGTTAGCATT+AGG | + | chr1_1:55731838-55731857 | Msa0029920:exon | 40.0% | |
| CTGCCTAATGCTAACCATTA+TGG | - | chr1_1:55731844-55731863 | None:intergenic | 40.0% | |
| TTAGCATTAGGCAGCTTCAT+GGG | + | chr1_1:55731850-55731869 | Msa0029920:exon | 40.0% | |
| TCTTGGCTACATCACACAAA+GGG | - | chr1_1:55731978-55731997 | None:intergenic | 40.0% | |
| CAACGATAATGCATGACTCT+TGG | - | chr1_1:55731995-55732014 | None:intergenic | 40.0% | |
| ! | CAACATGGGTTGAACGTGTA+AGG | - | chr1_1:55727404-55727423 | None:intergenic | 45.0% |
| TCAAGCAAGTGTGGAGCAAT+TGG | + | chr1_1:55727546-55727565 | Msa0029920:CDS | 45.0% | |
| TACAGGGTGTGTAGCTCAAA+TGG | - | chr1_1:55728848-55728867 | None:intergenic | 45.0% | |
| TCTCTCTCAAGAGGCAGAAT+GGG | - | chr1_1:55729252-55729271 | None:intergenic | 45.0% | |
| TTCTCTCTCAAGAGGCAGAA+TGG | - | chr1_1:55729253-55729272 | None:intergenic | 45.0% | |
| TGCTAGATCGGTGATGTGAT+AGG | + | chr1_1:55729290-55729309 | Msa0029920:intron | 45.0% | |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | - | chr1_1:55729622-55729641 | None:intergenic | 45.0% |
| ! | ATGGCCAATGATTTGGCAAG+TGG | - | chr1_1:55729631-55729650 | None:intergenic | 45.0% |
| ! | TTGAGGCACTCGCTTCATTA+TGG | - | chr1_1:55729650-55729669 | None:intergenic | 45.0% |
| !!! | CGGTGTTTTTTGAGCGATTC+AGG | - | chr1_1:55729682-55729701 | None:intergenic | 45.0% |
| ! | ACACCGCTATGCAATTTTGG+AGG | + | chr1_1:55729696-55729715 | Msa0029920:CDS | 45.0% |
| ! | TTTTAACAGGGAAGAGAGGC+AGG | + | chr1_1:55730032-55730051 | Msa0029920:intron | 45.0% |
| CCACAATAGATGGGTGTTTG+TGG | - | chr1_1:55730318-55730337 | None:intergenic | 45.0% | |
| CCACAAACACCCATCTATTG+TGG | + | chr1_1:55730315-55730334 | Msa0029920:CDS | 45.0% | |
| !!! | TGTGTTGGCTTCCTGTTTTC+TGG | - | chr1_1:55730585-55730604 | None:intergenic | 45.0% |
| GAAGCCAACACAAGATTGTG+TGG | + | chr1_1:55730593-55730612 | Msa0029920:CDS | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | - | chr1_1:55730600-55730619 | None:intergenic | 45.0% | |
| AGGAATGGAATGATAAGGGG+AGG | + | chr1_1:55730629-55730648 | Msa0029920:CDS | 45.0% | |
| CCATGGCATCTTAGACTTCA+AGG | - | chr1_1:55730668-55730687 | None:intergenic | 45.0% | |
| ! | CCTTGAAGTCTAAGATGCCA+TGG | + | chr1_1:55730665-55730684 | Msa0029920:CDS | 45.0% |
| GACACTGTCATCATTTGTGG+AGG | + | chr1_1:55731311-55731330 | Msa0029920:CDS | 45.0% | |
| AAAGATGTGGTGAGCACCAA+GGG | + | chr1_1:55731659-55731678 | Msa0029920:CDS | 45.0% | |
| GTTAGCATTAGGCAGCTTCA+TGG | + | chr1_1:55731849-55731868 | Msa0029920:exon | 45.0% | |
| GCTTCATGGGTCTTTAGCAT+TGG | + | chr1_1:55731863-55731882 | Msa0029920:three_prime_UTR | 45.0% | |
| CTTGGCTACATCACACAAAG+GGG | - | chr1_1:55731977-55731996 | None:intergenic | 45.0% | |
| CTCTTGGCTACATCACACAA+AGG | - | chr1_1:55731979-55731998 | None:intergenic | 45.0% | |
| !!! | ATATTTTTAAGTAATATTTT+TGG | + | chr1_1:55727714-55727733 | Msa0029920:intron | 5.0% |
| !!! | TAAAAAATAAATTTTCATTA+TGG | - | chr1_1:55727967-55727986 | None:intergenic | 5.0% |
| !!! | ATATTTTTAACTTTATATAA+AGG | + | chr1_1:55729393-55729412 | Msa0029920:intron | 5.0% |
| GGTGAAGTGAAGTTAGCAGG+GGG | - | chr1_1:55727583-55727602 | None:intergenic | 50.0% | |
| CGGTGAAGTGAAGTTAGCAG+GGG | - | chr1_1:55727584-55727603 | None:intergenic | 50.0% | |
| GCGGTGAAGTGAAGTTAGCA+GGG | - | chr1_1:55727585-55727604 | None:intergenic | 50.0% | |
| AGCGGTGAAGTGAAGTTAGC+AGG | - | chr1_1:55727586-55727605 | None:intergenic | 50.0% | |
| GGGGGTTGTGTAGCTCAATT+GGG | - | chr1_1:55728749-55728768 | None:intergenic | 50.0% | |
| AGGGGGTTGTGTAGCTCAAT+TGG | - | chr1_1:55728750-55728769 | None:intergenic | 50.0% | |
| CAACTCACGTCACGACATCA+AGG | + | chr1_1:55729780-55729799 | Msa0029920:CDS | 50.0% | |
| ACTGGGAATTGCTCCAAAGC+TGG | - | chr1_1:55729823-55729842 | None:intergenic | 50.0% | |
| GTCTTCTTGGCAGATGTCCA+AGG | - | chr1_1:55730530-55730549 | None:intergenic | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | + | chr1_1:55730606-55730625 | Msa0029920:CDS | 50.0% | |
| !! | AATGTGGGTTGATTCCGTGC+TGG | + | chr1_1:55730888-55730907 | Msa0029920:CDS | 50.0% |
| GGGTGGGCAATTGTAACCAA+AGG | + | chr1_1:55731569-55731588 | Msa0029920:CDS | 50.0% | |
| GAAAGATGTGGTGAGCACCA+AGG | + | chr1_1:55731658-55731677 | Msa0029920:CDS | 50.0% | |
| TCCAGATTGTCACCGCACAA+TGG | + | chr1_1:55731793-55731812 | Msa0029920:CDS | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | - | chr1_1:55731797-55731816 | None:intergenic | 50.0% | |
| ! | AGCTACAGGTGCTGCCATAA+TGG | + | chr1_1:55731827-55731846 | Msa0029920:CDS | 50.0% |
| ATGGTGGCAGATGGCATGCA+AGG | + | chr1_1:55729453-55729472 | Msa0029920:intron | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | - | chr1_1:55729811-55729830 | None:intergenic | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | + | chr1_1:55730609-55730628 | Msa0029920:CDS | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | + | chr1_1:55730614-55730633 | Msa0029920:CDS | 55.0% | |
| !! | TGGGTTGATTCCGTGCTGGT+TGG | + | chr1_1:55730892-55730911 | Msa0029920:CDS | 55.0% |
| CAGATGGCATGCAAGGCTCC+AGG | + | chr1_1:55729460-55729479 | Msa0029920:intron | 60.0% | |
| GCCAGCTCTTGCACCAGCTT+TGG | + | chr1_1:55729807-55729826 | Msa0029920:CDS | 60.0% | |
| GGCATGCAAGGCTCCAGGTG+AGG | + | chr1_1:55729465-55729484 | Msa0029920:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 55727144 | 55732181 | 55727144 | ID=Msa0029920;Name=Msa0029920 |
| chr1_1 | mRNA | 55727144 | 55732181 | 55727144 | ID=Msa0029920-mRNA-1;Parent=Msa0029920;Name=Msa0029920-mRNA-1;_AED=0.08;_eAED=0.08;_QI=90|1|1|1|1|1|7|328|664 |
| chr1_1 | exon | 55727144 | 55727440 | 55727144 | ID=Msa0029920-mRNA-1:exon:16622;Parent=Msa0029920-mRNA-1 |
| chr1_1 | exon | 55727535 | 55727633 | 55727535 | ID=Msa0029920-mRNA-1:exon:16623;Parent=Msa0029920-mRNA-1 |
| chr1_1 | exon | 55729463 | 55729911 | 55729463 | ID=Msa0029920-mRNA-1:exon:16624;Parent=Msa0029920-mRNA-1 |
| chr1_1 | exon | 55730041 | 55730135 | 55730041 | ID=Msa0029920-mRNA-1:exon:16625;Parent=Msa0029920-mRNA-1 |
| chr1_1 | exon | 55730220 | 55730353 | 55730220 | ID=Msa0029920-mRNA-1:exon:16626;Parent=Msa0029920-mRNA-1 |
| chr1_1 | exon | 55730478 | 55730936 | 55730478 | ID=Msa0029920-mRNA-1:exon:16627;Parent=Msa0029920-mRNA-1 |
| chr1_1 | exon | 55731302 | 55732181 | 55731302 | ID=Msa0029920-mRNA-1:exon:16628;Parent=Msa0029920-mRNA-1 |
| chr1_1 | five_prime_UTR | 55727144 | 55727233 | 55727144 | ID=Msa0029920-mRNA-1:five_prime_utr;Parent=Msa0029920-mRNA-1 |
| chr1_1 | CDS | 55727234 | 55727440 | 55727234 | ID=Msa0029920-mRNA-1:cds;Parent=Msa0029920-mRNA-1 |
| chr1_1 | CDS | 55727535 | 55727633 | 55727535 | ID=Msa0029920-mRNA-1:cds;Parent=Msa0029920-mRNA-1 |
| chr1_1 | CDS | 55729463 | 55729911 | 55729463 | ID=Msa0029920-mRNA-1:cds;Parent=Msa0029920-mRNA-1 |
| chr1_1 | CDS | 55730041 | 55730135 | 55730041 | ID=Msa0029920-mRNA-1:cds;Parent=Msa0029920-mRNA-1 |
| chr1_1 | CDS | 55730220 | 55730353 | 55730220 | ID=Msa0029920-mRNA-1:cds;Parent=Msa0029920-mRNA-1 |
| chr1_1 | CDS | 55730478 | 55730936 | 55730478 | ID=Msa0029920-mRNA-1:cds;Parent=Msa0029920-mRNA-1 |
| chr1_1 | CDS | 55731302 | 55731853 | 55731302 | ID=Msa0029920-mRNA-1:cds;Parent=Msa0029920-mRNA-1 |
| chr1_1 | three_prime_UTR | 55731854 | 55732181 | 55731854 | ID=Msa0029920-mRNA-1:three_prime_utr;Parent=Msa0029920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
