Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125170 | XP_013468706.1 | 96.235 | 664 | 25 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125170 | sp|Q9SS87|SEOB_ARATH | 29.202 | 702 | 424 | 23 | 25 | 663 | 38 | 729 | 2.03e-87 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125170 | A0A072VMS7 | 96.235 | 664 | 25 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029920 | Msa0125170 | 0.951575 | 1.527608e-109 | -8.615850e-47 |
| Msa0074800 | Msa0125170 | 0.807355 | 5.264596e-50 | -8.615850e-47 |
| Msa0077110 | Msa0125170 | 0.917087 | 8.137009e-86 | -8.615850e-47 |
| Msa0125170 | Msa0169910 | 0.912246 | 2.425089e-83 | -8.615850e-47 |
| Msa0125170 | Msa0212150 | 0.801719 | 7.886267e-49 | -8.615850e-47 |
| Msa0125170 | Msa0406000 | 0.808942 | 2.417208e-50 | -8.615850e-47 |
| Msa0125170 | Msa0424340 | 0.803920 | 2.768594e-49 | -8.615850e-47 |
| Msa0125170 | Msa0739580 | 0.807222 | 5.617495e-50 | -8.615850e-47 |
| Msa0125170 | Msa1406780 | 0.806152 | 9.449913e-50 | -8.615850e-47 |
| Msa0125170 | Msa1431850 | 0.813138 | 2.978717e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125170 | MtrunA17_Chr1g0186861 | 94.880 | 664 | 34 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1303 |
| Msa0125170 | MtrunA17_Chr1g0186851 | 86.145 | 664 | 90 | 1 | 1 | 664 | 1 | 662 | 0.0 | 1186 |
| Msa0125170 | MtrunA17_Chr1g0186911 | 96.797 | 562 | 18 | 0 | 103 | 664 | 1 | 562 | 0.0 | 1125 |
| Msa0125170 | MtrunA17_Chr1g0187041 | 73.684 | 665 | 171 | 2 | 1 | 663 | 1 | 663 | 0.0 | 981 |
| Msa0125170 | MtrunA17_Chr1g0186841 | 58.459 | 662 | 265 | 7 | 5 | 663 | 9 | 663 | 0.0 | 781 |
| Msa0125170 | MtrunA17_Chr1g0165791 | 35.347 | 662 | 402 | 11 | 20 | 663 | 25 | 678 | 3.60e-139 | 423 |
| Msa0125170 | MtrunA17_Chr7g0226571 | 32.184 | 696 | 407 | 19 | 24 | 663 | 25 | 711 | 6.64e-104 | 332 |
| Msa0125170 | MtrunA17_Chr1g0187001 | 31.784 | 667 | 389 | 16 | 20 | 662 | 11 | 635 | 1.99e-100 | 320 |
| Msa0125170 | MtrunA17_Chr3g0116601 | 30.825 | 691 | 413 | 19 | 23 | 661 | 27 | 704 | 1.36e-96 | 312 |
| Msa0125170 | MtrunA17_Chr8g0381301 | 31.223 | 695 | 416 | 24 | 22 | 662 | 17 | 703 | 9.90e-95 | 307 |
| Msa0125170 | MtrunA17_Chr1g0186991 | 30.299 | 670 | 406 | 18 | 20 | 662 | 31 | 666 | 2.10e-93 | 303 |
| Msa0125170 | MtrunA17_Chr1g0186981 | 29.685 | 667 | 407 | 14 | 20 | 662 | 34 | 662 | 7.89e-88 | 288 |
| Msa0125170 | MtrunA17_Chr1g0186901 | 92.233 | 103 | 8 | 0 | 1 | 103 | 1 | 103 | 2.64e-60 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125170 | AT3G01680.1 | 29.202 | 702 | 424 | 23 | 25 | 663 | 38 | 729 | 2.07e-88 | 291 |
| Msa0125170 | AT3G01670.2 | 26.891 | 595 | 375 | 13 | 116 | 661 | 261 | 844 | 7.66e-56 | 204 |
| Msa0125170 | AT3G01670.1 | 26.891 | 595 | 375 | 13 | 116 | 661 | 237 | 820 | 1.12e-55 | 203 |
| Msa0125170 | AT1G67790.1 | 23.770 | 610 | 393 | 19 | 98 | 659 | 79 | 664 | 2.37e-39 | 154 |
Find 149 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATTATGGAAGTGTTTA+AGG | 0.151408 | 1_3:+53545014 | Msa0125170:CDS |
| CATTGATTCTTCTTTGGTTT+TGG | 0.159114 | 1_3:-53545599 | None:intergenic |
| AAAACACCGCTATGCAATTT+TGG | 0.175126 | 1_3:+53544429 | Msa0125170:CDS |
| TCAAACCCCGACTGAAATTA+TGG | 0.226152 | 1_3:+53545002 | Msa0125170:CDS |
| AAAATGTGGTTAACACCTTT+TGG | 0.226558 | 1_3:+53546191 | Msa0125170:CDS |
| TTGGGTCATTGATTCTTCTT+TGG | 0.230123 | 1_3:-53545605 | None:intergenic |
| CATCACTTTGCAACCATAAA+AGG | 0.238124 | 1_3:+53545442 | Msa0125170:CDS |
| GCCAGCTCTTGCACCGGCTT+TGG | 0.251692 | 1_3:+53544543 | Msa0125170:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.255879 | 1_3:+53544569 | Msa0125170:CDS |
| TGTTCATCAGACATGGTTAA+AGG | 0.274935 | 1_3:-53542026 | None:intergenic |
| ATTACTCTTGTGGGTTACTA+TGG | 0.276653 | 1_3:-53541915 | None:intergenic |
| CTTGAGATTCCTAATGTTGA+TGG | 0.279806 | 1_3:+53546487 | Msa0125170:CDS |
| ATTTCATATGATTCATGTTT+GGG | 0.287513 | 1_3:+53545555 | Msa0125170:CDS |
| CTGCCTAATGCTAACCATTA+TGG | 0.297378 | 1_3:-53546582 | None:intergenic |
| CTTCATTATGGCCAAAGATT+TGG | 0.304556 | 1_3:-53544371 | None:intergenic |
| CATGTCTGATGAACACATTT+TGG | 0.307791 | 1_3:+53542034 | Msa0125170:CDS |
| CTCTTGAATATGGTGAGTTC+TGG | 0.316509 | 1_3:+53544314 | Msa0125170:CDS |
| AGGCAGGACTTATCTCAATT+TGG | 0.322196 | 1_3:+53544793 | Msa0125170:CDS |
| AGAACCACTTGCCAAATCTT+TGG | 0.322840 | 1_3:+53544360 | Msa0125170:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.325968 | 1_3:+53544570 | Msa0125170:CDS |
| TTGAGGCACTCGCTTCATTA+TGG | 0.326662 | 1_3:-53544383 | None:intergenic |
| CATTTCATATGATTCATGTT+TGG | 0.344991 | 1_3:+53545554 | Msa0125170:CDS |
| AATCAACCCACATTAGTTCT+TGG | 0.350415 | 1_3:-53545624 | None:intergenic |
| ATTCATGTTTGGGGAGTAAA+GGG | 0.351683 | 1_3:+53545565 | Msa0125170:CDS |
| AATAGTGGCATCATTTACTA+TGG | 0.358093 | 1_3:-53546119 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359855 | 1_3:-53544574 | None:intergenic |
| TTTAGTGGAACCACAATAGA+TGG | 0.364875 | 1_3:-53545070 | None:intergenic |
| ACAAGCTGTCAAACTATTCA+TGG | 0.373229 | 1_3:+53544257 | Msa0125170:CDS |
| TCATAGTTGAGATGTCTTCT+TGG | 0.373232 | 1_3:-53545285 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1_3:-53546535 | None:intergenic |
| GCATTTCAAGCTGAATCCTT+TGG | 0.400511 | 1_3:+53545489 | Msa0125170:CDS |
| TTCAATTGAGTTGATTTGCT+TGG | 0.402147 | 1_3:+53546156 | Msa0125170:CDS |
| TCAAGCAAGTGTGGAGCAAT+TGG | 0.404063 | 1_3:+53542278 | Msa0125170:CDS |
| TACTATGGCGCCATGATACT+TGG | 0.408152 | 1_3:-53546104 | None:intergenic |
| TCTGGACACTCAATAAAGTC+TGG | 0.413591 | 1_3:-53546517 | None:intergenic |
| CAGACATGGTTAAAGGGTTA+TGG | 0.416704 | 1_3:-53542019 | None:intergenic |
| GTGGAGGAATGGAATGATAA+GGG | 0.417645 | 1_3:+53545370 | Msa0125170:CDS |
| AGCTACAGGTGCTGCCATAA+TGG | 0.418677 | 1_3:+53546568 | Msa0125170:CDS |
| CATCAAACTTAGTGTCACTA+TGG | 0.419012 | 1_3:-53542079 | None:intergenic |
| AGCAATCACAATAGAACCTT+TGG | 0.422723 | 1_3:-53546326 | None:intergenic |
| TATGATCATATCCAGAAAAC+AGG | 0.424006 | 1_3:+53545316 | Msa0125170:CDS |
| CTGCCATAATGGTTAGCATT+AGG | 0.426200 | 1_3:+53546579 | Msa0125170:exon |
| TGCACTAGAATTACTCTTGT+GGG | 0.428005 | 1_3:-53541924 | None:intergenic |
| CCATGGCATCTTAGACTTCA+AGG | 0.428095 | 1_3:-53545410 | None:intergenic |
| CCACAATAGATGGGTGTTTG+TGG | 0.437219 | 1_3:-53545060 | None:intergenic |
| ATCAACCCACATTAGTTCTT+GGG | 0.438934 | 1_3:-53545623 | None:intergenic |
| GATTCATGTTTGGGGAGTAA+AGG | 0.439109 | 1_3:+53545564 | Msa0125170:CDS |
| TTGTATGCAATTTCCTCACC+TGG | 0.440380 | 1_3:-53544214 | None:intergenic |
| AGTCTTTGTCTGCTTAATAG+TGG | 0.440642 | 1_3:-53546134 | None:intergenic |
| TCCAAAGCCGGTGCAAGAGC+TGG | 0.443444 | 1_3:-53544544 | None:intergenic |
| GTTAGCATTAGGCAGCTTCA+TGG | 0.445244 | 1_3:+53546590 | Msa0125170:exon |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_3:-53545364 | None:intergenic |
| GTTCATCAGACATGGTTAAA+GGG | 0.454129 | 1_3:-53542025 | None:intergenic |
| GCATTATCGTTGATCATAGT+AGG | 0.454901 | 1_3:+53546743 | Msa0125170:three_prime_UTR |
| CACAGTTTACATTATTCAGT+TGG | 0.458366 | 1_3:-53546903 | None:intergenic |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_3:-53542133 | None:intergenic |
| GTTCTTGTTCATTTCAACCT+TGG | 0.463498 | 1_3:+53545255 | Msa0125170:CDS |
| ACACTTCCATAATTTCAGTC+GGG | 0.466104 | 1_3:-53545008 | None:intergenic |
| ATTGTGATTGCTGTTGGTCA+TGG | 0.472155 | 1_3:+53546337 | Msa0125170:CDS |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1_3:+53544268 | Msa0125170:CDS |
| TTGCAACCATAAAAGGCATC+AGG | 0.479822 | 1_3:+53545449 | Msa0125170:CDS |
| TTGTGATTGCTGTTGGTCAT+GGG | 0.479882 | 1_3:+53546338 | Msa0125170:CDS |
| TGTGGAGGAATGGAATGATA+AGG | 0.480677 | 1_3:+53545369 | Msa0125170:CDS |
| GCTTCATGGGTCTTTAGCAT+TGG | 0.482494 | 1_3:+53546604 | Msa0125170:three_prime_UTR |
| AGCGGTGAAGTGAAGTTAGC+AGG | 0.483068 | 1_3:-53542315 | None:intergenic |
| CATTTGCAGAGTTTGACAAA+TGG | 0.486055 | 1_3:+53546377 | Msa0125170:CDS |
| GATGACACTGTCATCATTTG+TGG | 0.486509 | 1_3:+53546049 | Msa0125170:CDS |
| TGTTTCCAGCAATGTTGAAA+AGG | 0.490292 | 1_3:-53542109 | None:intergenic |
| GCATTGATATAAAGATTAAG+TGG | 0.490685 | 1_3:+53545659 | Msa0125170:CDS |
| CAACAATTCACCAAGTATCA+TGG | 0.491745 | 1_3:+53546094 | Msa0125170:CDS |
| GATTGATATCATCATTGAGT+TGG | 0.493959 | 1_3:+53544486 | Msa0125170:CDS |
| CAGATGGCATGCAAGGCTCC+AGG | 0.494131 | 1_3:+53544196 | Msa0125170:intron |
| CAACGATAATGCATGACTCT+TGG | 0.494272 | 1_3:-53546732 | None:intergenic |
| GCAGAGTTAAAACTATCAAA+TGG | 0.503065 | 1_3:-53546848 | None:intergenic |
| AACACTTCCATAATTTCAGT+CGG | 0.506807 | 1_3:-53545009 | None:intergenic |
| TGGAAGTGTTTATCAGCTAC+AGG | 0.511091 | 1_3:+53546554 | Msa0125170:CDS |
| GGAGGTGAACAATCTGATCA+AGG | 0.513901 | 1_3:+53544450 | Msa0125170:CDS |
| CTGAGTAACAATTGCAACAA+TGG | 0.516089 | 1_3:-53544602 | None:intergenic |
| AAATGAGTATTCAAAGCCCT+TGG | 0.526373 | 1_3:-53546416 | None:intergenic |
| TTGTGGTTCCACTAAAACAC+TGG | 0.527106 | 1_3:+53545077 | Msa0125170:CDS |
| GGTTCTATTGTGATTGCTGT+TGG | 0.527999 | 1_3:+53546331 | Msa0125170:CDS |
| CAATGACCCAAGAACTAATG+TGG | 0.529258 | 1_3:+53545617 | Msa0125170:CDS |
| AGGCATCAGGTTCATAAAAG+AGG | 0.531058 | 1_3:+53545462 | Msa0125170:CDS |
| TCACAAATCACTATACAGAT+TGG | 0.534352 | 1_3:+53544859 | Msa0125170:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.536453 | 1_3:-53545365 | None:intergenic |
| ACTGGGAATTGCTCCAAAGC+CGG | 0.544915 | 1_3:-53544556 | None:intergenic |
| GTGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_3:+53546068 | Msa0125170:CDS |
| CTGGACACTCAATAAAGTCT+GGG | 0.551291 | 1_3:-53546516 | None:intergenic |
| CAAAATGTGTTCATCAGACA+TGG | 0.554726 | 1_3:-53542033 | None:intergenic |
| GCGGTGAAGTGAAGTTAGCA+GGG | 0.555690 | 1_3:-53542314 | None:intergenic |
| GATTCAGGTTTGGTGAGTTG+AGG | 0.558486 | 1_3:-53544400 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1_3:+53544827 | Msa0125170:CDS |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.559865 | 1_3:-53544355 | None:intergenic |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_3:+53545359 | Msa0125170:CDS |
| TTAGCATTAGGCAGCTTCAT+GGG | 0.566452 | 1_3:+53546591 | Msa0125170:exon |
| CAACTCACGTCACGACATCA+AGG | 0.567567 | 1_3:+53544516 | Msa0125170:CDS |
| CATTGATATAAAGATTAAGT+GGG | 0.567772 | 1_3:+53545660 | Msa0125170:CDS |
| AAAGATGTGGTGAGCACCAA+GGG | 0.568763 | 1_3:+53546400 | Msa0125170:CDS |
| TTTGAAGAAAATCAATTCTG+AGG | 0.569533 | 1_3:+53542344 | Msa0125170:CDS |
| GTGCACTAGAATTACTCTTG+TGG | 0.570358 | 1_3:-53541925 | None:intergenic |
| GTCTTCTTGGCAGATGTCCA+AGG | 0.571060 | 1_3:-53545272 | None:intergenic |
| CATCAACATTAGGAATCTCA+AGG | 0.576608 | 1_3:-53546486 | None:intergenic |
| ATGGCCAAAGATTTGGCAAG+TGG | 0.577101 | 1_3:-53544364 | None:intergenic |
| CACTTCCATAATTTCAGTCG+GGG | 0.578548 | 1_3:-53545007 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1_3:-53541974 | None:intergenic |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_3:-53545342 | None:intergenic |
| CATTTGTGGAGGTAAAGATA+AGG | 0.582924 | 1_3:+53546063 | Msa0125170:CDS |
| CCTTGAAGTCTAAGATGCCA+TGG | 0.584604 | 1_3:+53545410 | Msa0125170:CDS |
| CAAGCTGTCAAACTATTCAT+GGG | 0.585743 | 1_3:+53544258 | Msa0125170:CDS |
| TCACGAATGCAACTAAAAGA+AGG | 0.586356 | 1_3:+53546767 | Msa0125170:three_prime_UTR |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_3:+53545351 | Msa0125170:CDS |
| CACAAAGTTATCAACAACAT+GGG | 0.594338 | 1_3:-53542147 | None:intergenic |
| CCACAAACACCCATCTATTG+TGG | 0.594377 | 1_3:+53545060 | Msa0125170:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.596089 | 1_3:+53545338 | Msa0125170:CDS |
| ACAATCTGATCAAGGCAACA+TGG | 0.598625 | 1_3:+53544458 | Msa0125170:CDS |
| AATGTGGGTTGATTCCGTGC+TGG | 0.599556 | 1_3:+53545633 | Msa0125170:CDS |
| GCACAAAGTTATCAACAACA+TGG | 0.600378 | 1_3:-53542148 | None:intergenic |
| TTAGTGGAACCACAATAGAT+GGG | 0.601002 | 1_3:-53545069 | None:intergenic |
| TGGGTTGATTCCGTGCTGGT+TGG | 0.605127 | 1_3:+53545637 | Msa0125170:CDS |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1_3:+53541978 | Msa0125170:CDS |
| GGAAGTGCCAGCTCTTGCAC+CGG | 0.610232 | 1_3:+53544537 | Msa0125170:CDS |
| GGAGTCTCAACAACAAAATG+TGG | 0.614411 | 1_3:+53546177 | Msa0125170:CDS |
| TATATCAATGCCAACCAGCA+CGG | 0.619216 | 1_3:-53545647 | None:intergenic |
| GGGTGGGCAATTGTAACCAA+AGG | 0.622664 | 1_3:+53546310 | Msa0125170:CDS |
| TTTCATATGATTCATGTTTG+GGG | 0.624357 | 1_3:+53545556 | Msa0125170:CDS |
| AATGACCCAAGAACTAATGT+GGG | 0.624567 | 1_3:+53545618 | Msa0125170:CDS |
| ACATGAATATCAAGCAAGTG+TGG | 0.629780 | 1_3:+53542269 | Msa0125170:CDS |
| GGCATGCAAGGCTCCAGGTG+AGG | 0.630978 | 1_3:+53544201 | Msa0125170:CDS |
| AGGAATGGAATGATAAGGGG+AGG | 0.635212 | 1_3:+53545374 | Msa0125170:CDS |
| ATGGTGGCAGATGGCATGCA+AGG | 0.637627 | 1_3:+53544189 | Msa0125170:intron |
| TGGAGGAATGGAATGATAAG+GGG | 0.637916 | 1_3:+53545371 | Msa0125170:CDS |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1_3:+53546534 | Msa0125170:CDS |
| ACTCTTGGCTACATCACACA+AGG | 0.640813 | 1_3:-53546717 | None:intergenic |
| GAAAGATGTGGTGAGCACCA+AGG | 0.642800 | 1_3:+53546399 | Msa0125170:CDS |
| GACACTGTCATCATTTGTGG+AGG | 0.653594 | 1_3:+53546052 | Msa0125170:CDS |
| AAGTGATGCAACACATACCA+TGG | 0.654990 | 1_3:-53545427 | None:intergenic |
| CGGTGAAGTGAAGTTAGCAG+GGG | 0.658379 | 1_3:-53542313 | None:intergenic |
| GTTGTTGTGTTGAGTACACA+AGG | 0.659541 | 1_3:+53545511 | Msa0125170:CDS |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1_3:-53544573 | None:intergenic |
| GTACTCAACACAACAACCAA+AGG | 0.668954 | 1_3:-53545505 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.674200 | 1_3:+53545339 | Msa0125170:CDS |
| TGATAAACACTTCCATTGTG+CGG | 0.679237 | 1_3:-53546546 | None:intergenic |
| AAACTTACGAATCAGTAGTG+AGG | 0.684196 | 1_3:-53544633 | None:intergenic |
| CTCTTGGCTACATCACACAA+GGG | 0.685376 | 1_3:-53546716 | None:intergenic |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_3:+53545354 | Msa0125170:CDS |
| TCTTGGCTACATCACACAAG+GGG | 0.703543 | 1_3:-53546715 | None:intergenic |
| GTTTGACAAATGGAAAGATG+TGG | 0.704359 | 1_3:+53546387 | Msa0125170:CDS |
| GGTGAAGTGAAGTTAGCAGG+GGG | 0.723578 | 1_3:-53542312 | None:intergenic |
| TCACCTCCAAAATTGCATAG+CGG | 0.754711 | 1_3:-53544435 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAGAAATTTTCATTA+TGG | - | chr1_3:53542701-53542720 | None:intergenic | 10.0% |
| !! | AAAAAAAAACTATTACAAAA+TGG | - | chr1_3:53542844-53542863 | None:intergenic | 10.0% |
| !!! | CAAATTTTTTATTTTTCTTT+TGG | + | chr1_3:53543275-53543294 | Msa0125170:intron | 10.0% |
| !!! | TTACTAAAGATTTTTTTTTA+GGG | - | chr1_3:53543656-53543675 | None:intergenic | 10.0% |
| !! | ATAAAGTTAAAAATATTACA+GGG | - | chr1_3:53544125-53544144 | None:intergenic | 10.0% |
| !! | TATAAAGTTAAAAATATTAC+AGG | - | chr1_3:53544126-53544145 | None:intergenic | 10.0% |
| !! | TACTAAAGAAAAAAAGTAAT+GGG | - | chr1_3:53543632-53543651 | None:intergenic | 15.0% |
| !! | ATACTAAAGAAAAAAAGTAA+TGG | - | chr1_3:53543633-53543652 | None:intergenic | 15.0% |
| !!! | GTTACTAAAGATTTTTTTTT+AGG | - | chr1_3:53543657-53543676 | None:intergenic | 15.0% |
| !! | TTCCATAAAAATCATATAAA+TGG | + | chr1_3:53543699-53543718 | Msa0125170:intron | 15.0% |
| !!! | TTTTTTTAGAGGAATATAAA+TGG | + | chr1_3:53543727-53543746 | Msa0125170:intron | 15.0% |
| !!! | TTTTAATTATGTGCTTATTT+GGG | - | chr1_3:53543920-53543939 | None:intergenic | 15.0% |
| !!! | TTTTTAATTATGTGCTTATT+TGG | - | chr1_3:53543921-53543940 | None:intergenic | 15.0% |
| !! | AATGAATATTGGAAAATTAA+AGG | + | chr1_3:53544083-53544102 | Msa0125170:intron | 15.0% |
| !!! | TTTAACTTTATATAAAGGTT+TGG | + | chr1_3:53544134-53544153 | Msa0125170:intron | 15.0% |
| !!! | TGAATGTTTTATATTTAAAC+AGG | + | chr1_3:53545201-53545220 | Msa0125170:intron | 15.0% |
| !! | AATATAGGTAAATATTACTT+TGG | - | chr1_3:53545860-53545879 | None:intergenic | 15.0% |
| !!! | TTAACTTGTTTGTTTATTAC+AGG | + | chr1_3:53542245-53542264 | Msa0125170:intron | 20.0% |
| !!! | TAACTTGTTTGTTTATTACA+GGG | + | chr1_3:53542246-53542265 | Msa0125170:intron | 20.0% |
| !!! | AAAATGTGTGTTTTATTTAG+AGG | + | chr1_3:53542587-53542606 | Msa0125170:intron | 20.0% |
| !!! | TCTTTTAAATTGTGATAAAC+AGG | - | chr1_3:53542917-53542936 | None:intergenic | 20.0% |
| !!! | AGAAAAACATTTTCTATAAC+TGG | + | chr1_3:53543007-53543026 | Msa0125170:intron | 20.0% |
| !!! | AAAAGAGCTTATATTCTTTT+TGG | - | chr1_3:53543179-53543198 | None:intergenic | 20.0% |
| !!! | CTCATTAACTTTTTTTCTTT+AGG | + | chr1_3:53543535-53543554 | Msa0125170:intron | 20.0% |
| !!! | GACCATTTATATGATTTTTA+TGG | - | chr1_3:53543704-53543723 | None:intergenic | 20.0% |
| !! | AGCTATTTATGTAATAACTT+AGG | + | chr1_3:53543760-53543779 | Msa0125170:intron | 20.0% |
| !!! | TTACTAACCTTTTTTTTAAC+AGG | + | chr1_3:53544764-53544783 | Msa0125170:intron | 20.0% |
| !!! | TACTAACCTTTTTTTTAACA+GGG | + | chr1_3:53544765-53544784 | Msa0125170:intron | 20.0% |
| !! | AAAATAATTTCCTTCAGTAT+GGG | - | chr1_3:53544935-53544954 | None:intergenic | 20.0% |
| !! | TAAAATAATTTCCTTCAGTA+TGG | - | chr1_3:53544936-53544955 | None:intergenic | 20.0% |
| !! | ATTTCATATGATTCATGTTT+GGG | + | chr1_3:53545555-53545574 | Msa0125170:CDS | 20.0% |
| !! | CATTGATATAAAGATTAAGT+GGG | + | chr1_3:53545660-53545679 | Msa0125170:CDS | 20.0% |
| !! | GTAAATATTACTTTGGATTT+AGG | - | chr1_3:53545853-53545872 | None:intergenic | 20.0% |
| !! | ATAATTATGTCTCACAATAT+AGG | - | chr1_3:53545875-53545894 | None:intergenic | 20.0% |
| !!! | CTTTTTTCTCTGAATCAATA+TGG | + | chr1_3:53541947-53541966 | Msa0125170:exon | 25.0% |
| ! | TAAAAAAAGAACGTAGAGAT+AGG | - | chr1_3:53542193-53542212 | None:intergenic | 25.0% |
| ! | TTTGAAGAAAATCAATTCTG+AGG | + | chr1_3:53542344-53542363 | Msa0125170:CDS | 25.0% |
| ! | TTTACATGTAGTTTAGCATA+TGG | - | chr1_3:53542392-53542411 | None:intergenic | 25.0% |
| !! | CTTTTTGGATAGATTAATCT+TGG | - | chr1_3:53543164-53543183 | None:intergenic | 25.0% |
| !!! | AGACACTCATGATTTTTTTT+TGG | - | chr1_3:53543362-53543381 | None:intergenic | 25.0% |
| ! | AACAAACTCATGGAATTATA+GGG | - | chr1_3:53543505-53543524 | None:intergenic | 25.0% |
| ! | TAACAAACTCATGGAATTAT+AGG | - | chr1_3:53543506-53543525 | None:intergenic | 25.0% |
| ! | TAACAAACTCATGATTTACA+GGG | - | chr1_3:53543600-53543619 | None:intergenic | 25.0% |
| !!! | AAATGGTCGATTTTTTTTAG+AGG | + | chr1_3:53543716-53543735 | Msa0125170:intron | 25.0% |
| ! | TTGTTGTATACTTTATATGC+AGG | - | chr1_3:53543805-53543824 | None:intergenic | 25.0% |
| ! | TAATCCCACGAATATAATAT+TGG | + | chr1_3:53543951-53543970 | Msa0125170:intron | 25.0% |
| ! | TGACAATGTTGAATGAATAT+TGG | + | chr1_3:53544072-53544091 | Msa0125170:intron | 25.0% |
| ! | TGCACATTGTATATGAATAA+CGG | + | chr1_3:53544157-53544176 | Msa0125170:intron | 25.0% |
| !! | ACCTTTTACATAATCTAAGT+TGG | + | chr1_3:53544717-53544736 | Msa0125170:intron | 25.0% |
| !!! | TGAAATTATGGAAGTGTTTA+AGG | + | chr1_3:53545014-53545033 | Msa0125170:CDS | 25.0% |
| !!! | CTTCACTTTTTAATCTAGTT+TGG | + | chr1_3:53545176-53545195 | Msa0125170:intron | 25.0% |
| ! | CATTTCATATGATTCATGTT+TGG | + | chr1_3:53545554-53545573 | Msa0125170:CDS | 25.0% |
| ! | TTTCATATGATTCATGTTTG+GGG | + | chr1_3:53545556-53545575 | Msa0125170:CDS | 25.0% |
| !! | GCATTGATATAAAGATTAAG+TGG | + | chr1_3:53545659-53545678 | Msa0125170:CDS | 25.0% |
| ! | TCTGATAATATTACATCATG+TGG | + | chr1_3:53545818-53545837 | Msa0125170:intron | 25.0% |
| !! | ATTTCCTTTGAAAAATGAAG+AGG | + | chr1_3:53546023-53546042 | Msa0125170:intron | 25.0% |
| !! | TTTCCTTTGAAAAATGAAGA+GGG | + | chr1_3:53546024-53546043 | Msa0125170:intron | 25.0% |
| ! | TTTCATACAAAAATGAGTCA+GGG | + | chr1_3:53546290-53546309 | Msa0125170:CDS | 25.0% |
| ! | AAGATTTTGTGTGTTTTGTC+TGG | - | chr1_3:53541885-53541904 | None:intergenic | 30.0% |
| CACAAAGTTATCAACAACAT+GGG | - | chr1_3:53542150-53542169 | None:intergenic | 30.0% | |
| ! | ATTTTCTTCAAAGTACACAG+CGG | - | chr1_3:53542336-53542355 | None:intergenic | 30.0% |
| ! | AAAGAAAGTGTGTAACAAGT+AGG | + | chr1_3:53542800-53542819 | Msa0125170:intron | 30.0% |
| TGAGCTAAGAGAAAAAAAGT+TGG | - | chr1_3:53543461-53543480 | None:intergenic | 30.0% | |
| ACAAACTCATGGAATTATAG+GGG | - | chr1_3:53543504-53543523 | None:intergenic | 30.0% | |
| TCAATGTTGTAACAAACTCA+TGG | - | chr1_3:53543515-53543534 | None:intergenic | 30.0% | |
| GTAACAAACTCATGATTTAC+AGG | - | chr1_3:53543601-53543620 | None:intergenic | 30.0% | |
| !! | AGTGTTTGAAGTCATTTTGA+AGG | - | chr1_3:53543859-53543878 | None:intergenic | 30.0% |
| !! | TCAAAAGTGTTTGATGTCAT+GGG | - | chr1_3:53543892-53543911 | None:intergenic | 30.0% |
| !! | ATCAAAAGTGTTTGATGTCA+TGG | - | chr1_3:53543893-53543912 | None:intergenic | 30.0% |
| AATTATGTGCTTATTTGGGA+AGG | - | chr1_3:53543916-53543935 | None:intergenic | 30.0% | |
| GTGTCCAATATTATATTCGT+GGG | - | chr1_3:53543958-53543977 | None:intergenic | 30.0% | |
| AGTGTCCAATATTATATTCG+TGG | - | chr1_3:53543959-53543978 | None:intergenic | 30.0% | |
| TAGATAGTAATGTGCTAGAT+CGG | + | chr1_3:53544014-53544033 | Msa0125170:intron | 30.0% | |
| TGAATAACGGTATTGTATGA+TGG | + | chr1_3:53544170-53544189 | Msa0125170:intron | 30.0% | |
| GATTGATATCATCATTGAGT+TGG | + | chr1_3:53544486-53544505 | Msa0125170:CDS | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | + | chr1_3:53544569-53544588 | Msa0125170:CDS | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | + | chr1_3:53544570-53544589 | Msa0125170:CDS | 30.0% |
| TAACCCAATATACATCAACT+GGG | - | chr1_3:53544576-53544595 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | - | chr1_3:53544577-53544596 | None:intergenic | 30.0% | |
| GCCAACTTAGATTATGTAAA+AGG | - | chr1_3:53544721-53544740 | None:intergenic | 30.0% | |
| TCTCTTCCCTGTTAAAAAAA+AGG | - | chr1_3:53544774-53544793 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAACAGGGAAGAG+AGG | + | chr1_3:53544773-53544792 | Msa0125170:intron | 30.0% |
| ACATCATAATCAGCAAATTG+AGG | + | chr1_3:53544827-53544846 | Msa0125170:CDS | 30.0% | |
| TCACAAATCACTATACAGAT+TGG | + | chr1_3:53544859-53544878 | Msa0125170:CDS | 30.0% | |
| ! | ATATTTTCTTCCCATACTGA+AGG | + | chr1_3:53544922-53544941 | Msa0125170:intron | 30.0% |
| AACACTTCCATAATTTCAGT+CGG | - | chr1_3:53545012-53545031 | None:intergenic | 30.0% | |
| CATTGATGTGTTGAAAAAGA+AGG | + | chr1_3:53545228-53545247 | Msa0125170:CDS | 30.0% | |
| TATGATCATATCCAGAAAAC+AGG | + | chr1_3:53545316-53545335 | Msa0125170:CDS | 30.0% | |
| !!! | CATTGATTCTTCTTTGGTTT+TGG | - | chr1_3:53545602-53545621 | None:intergenic | 30.0% |
| CTTGTCAACAATAAAGAGAA+TGG | - | chr1_3:53545960-53545979 | None:intergenic | 30.0% | |
| AATAGTGGCATCATTTACTA+TGG | - | chr1_3:53546122-53546141 | None:intergenic | 30.0% | |
| !! | TTCAATTGAGTTGATTTGCT+TGG | + | chr1_3:53546156-53546175 | Msa0125170:CDS | 30.0% |
| ! | AAAATGTGGTTAACACCTTT+TGG | + | chr1_3:53546191-53546210 | Msa0125170:CDS | 30.0% |
| CTTTCATACAAAAATGAGTC+AGG | + | chr1_3:53546289-53546308 | Msa0125170:CDS | 30.0% | |
| GCAGAGTTAAAACTATCAAA+TGG | - | chr1_3:53546851-53546870 | None:intergenic | 30.0% | |
| ! | ATTACTCTTGTGGGTTACTA+TGG | - | chr1_3:53541918-53541937 | None:intergenic | 35.0% |
| TGCACTAGAATTACTCTTGT+GGG | - | chr1_3:53541927-53541946 | None:intergenic | 35.0% | |
| GTTCATCAGACATGGTTAAA+GGG | - | chr1_3:53542028-53542047 | None:intergenic | 35.0% | |
| TGTTCATCAGACATGGTTAA+AGG | - | chr1_3:53542029-53542048 | None:intergenic | 35.0% | |
| CAAAATGTGTTCATCAGACA+TGG | - | chr1_3:53542036-53542055 | None:intergenic | 35.0% | |
| ! | CATGTCTGATGAACACATTT+TGG | + | chr1_3:53542034-53542053 | Msa0125170:CDS | 35.0% |
| ! | CATCAAACTTAGTGTCACTA+TGG | - | chr1_3:53542082-53542101 | None:intergenic | 35.0% |
| ! | GAATACCTTTTCAACATTGC+TGG | + | chr1_3:53542104-53542123 | Msa0125170:CDS | 35.0% |
| TGTTTCCAGCAATGTTGAAA+AGG | - | chr1_3:53542112-53542131 | None:intergenic | 35.0% | |
| GCACAAAGTTATCAACAACA+TGG | - | chr1_3:53542151-53542170 | None:intergenic | 35.0% | |
| ACATGAATATCAAGCAAGTG+TGG | + | chr1_3:53542269-53542288 | Msa0125170:CDS | 35.0% | |
| ! | TTGTGACTGAAGAGAGATTT+TGG | + | chr1_3:53542501-53542520 | Msa0125170:intron | 35.0% |
| ! | TGTGACTGAAGAGAGATTTT+GGG | + | chr1_3:53542502-53542521 | Msa0125170:intron | 35.0% |
| AAAGTGTGTAACAAGTAGGA+CGG | + | chr1_3:53542804-53542823 | Msa0125170:intron | 35.0% | |
| !!! | GGTGGTTTTGAGTTCAAATT+TGG | - | chr1_3:53543440-53543459 | None:intergenic | 35.0% |
| GCTAAGAGAAAAAAAGTTGG+TGG | - | chr1_3:53543458-53543477 | None:intergenic | 35.0% | |
| CAAACTCATGGAATTATAGG+GGG | - | chr1_3:53543503-53543522 | None:intergenic | 35.0% | |
| !! | AGTCATTTTGAAGGAAAGAG+AGG | - | chr1_3:53543850-53543869 | None:intergenic | 35.0% |
| ! | CTATTTCTTTCTCTCTCAAG+AGG | - | chr1_3:53543997-53544016 | None:intergenic | 35.0% |
| ATAACGGTATTGTATGATGG+TGG | + | chr1_3:53544173-53544192 | Msa0125170:intron | 35.0% | |
| ACAAGCTGTCAAACTATTCA+TGG | + | chr1_3:53544257-53544276 | Msa0125170:CDS | 35.0% | |
| CAAGCTGTCAAACTATTCAT+GGG | + | chr1_3:53544258-53544277 | Msa0125170:CDS | 35.0% | |
| ! | AACTATTCATGGGTTGCAAA+AGG | + | chr1_3:53544268-53544287 | Msa0125170:CDS | 35.0% |
| !! | TCTGCTTTTGCTCTTGAATA+TGG | + | chr1_3:53544304-53544323 | Msa0125170:CDS | 35.0% |
| CTTCATTATGGCCAAAGATT+TGG | - | chr1_3:53544374-53544393 | None:intergenic | 35.0% | |
| !!! | TTTTTTGAGCGATTCAGGTT+TGG | - | chr1_3:53544413-53544432 | None:intergenic | 35.0% |
| ! | AAAACACCGCTATGCAATTT+TGG | + | chr1_3:53544429-53544448 | Msa0125170:CDS | 35.0% |
| CTGAGTAACAATTGCAACAA+TGG | - | chr1_3:53544605-53544624 | None:intergenic | 35.0% | |
| AAACTTACGAATCAGTAGTG+AGG | - | chr1_3:53544636-53544655 | None:intergenic | 35.0% | |
| ACACTTCCATAATTTCAGTC+GGG | - | chr1_3:53545011-53545030 | None:intergenic | 35.0% | |
| !!! | TGTTTAAGGTGCTGATTTTC+TGG | + | chr1_3:53545028-53545047 | Msa0125170:CDS | 35.0% |
| TTAGTGGAACCACAATAGAT+GGG | - | chr1_3:53545072-53545091 | None:intergenic | 35.0% | |
| TTTAGTGGAACCACAATAGA+TGG | - | chr1_3:53545073-53545092 | None:intergenic | 35.0% | |
| !! | AACACTAACCAGTGTTTTAG+TGG | - | chr1_3:53545088-53545107 | None:intergenic | 35.0% |
| GTTCTTGTTCATTTCAACCT+TGG | + | chr1_3:53545255-53545274 | Msa0125170:CDS | 35.0% | |
| TCATAGTTGAGATGTCTTCT+TGG | - | chr1_3:53545288-53545307 | None:intergenic | 35.0% | |
| CATCACTTTGCAACCATAAA+AGG | + | chr1_3:53545442-53545461 | Msa0125170:CDS | 35.0% | |
| ! | TATGAACCTGATGCCTTTTA+TGG | - | chr1_3:53545458-53545477 | None:intergenic | 35.0% |
| ATTCATGTTTGGGGAGTAAA+GGG | + | chr1_3:53545565-53545584 | Msa0125170:CDS | 35.0% | |
| !!! | CTTCTTTGGTTTTGGTGAAA+GGG | - | chr1_3:53545594-53545613 | None:intergenic | 35.0% |
| !!! | TCTTCTTTGGTTTTGGTGAA+AGG | - | chr1_3:53545595-53545614 | None:intergenic | 35.0% |
| !! | TTGGGTCATTGATTCTTCTT+TGG | - | chr1_3:53545608-53545627 | None:intergenic | 35.0% |
| AATGACCCAAGAACTAATGT+GGG | + | chr1_3:53545618-53545637 | Msa0125170:CDS | 35.0% | |
| ! | ATCAACCCACATTAGTTCTT+GGG | - | chr1_3:53545626-53545645 | None:intergenic | 35.0% |
| ! | AATCAACCCACATTAGTTCT+TGG | - | chr1_3:53545627-53545646 | None:intergenic | 35.0% |
| AGATTAAGTGGGTAAGTGTT+TGG | + | chr1_3:53545671-53545690 | Msa0125170:intron | 35.0% | |
| CATTTGTGGAGGTAAAGATA+AGG | + | chr1_3:53546063-53546082 | Msa0125170:CDS | 35.0% | |
| CAACAATTCACCAAGTATCA+TGG | + | chr1_3:53546094-53546113 | Msa0125170:CDS | 35.0% | |
| AGTCTTTGTCTGCTTAATAG+TGG | - | chr1_3:53546137-53546156 | None:intergenic | 35.0% | |
| !! | GGTTAACACCTTTTGGAAAA+AGG | + | chr1_3:53546198-53546217 | Msa0125170:CDS | 35.0% |
| ! | ACTCTCTACCTTTTTCCAAA+AGG | - | chr1_3:53546209-53546228 | None:intergenic | 35.0% |
| !! | GTTTGTTTTCTCATGCATCT+TGG | - | chr1_3:53546242-53546261 | None:intergenic | 35.0% |
| ATACAAAAATGAGTCAGGGT+GGG | + | chr1_3:53546294-53546313 | Msa0125170:CDS | 35.0% | |
| AGCAATCACAATAGAACCTT+TGG | - | chr1_3:53546329-53546348 | None:intergenic | 35.0% | |
| CATTTGCAGAGTTTGACAAA+TGG | + | chr1_3:53546377-53546396 | Msa0125170:CDS | 35.0% | |
| GTTTGACAAATGGAAAGATG+TGG | + | chr1_3:53546387-53546406 | Msa0125170:CDS | 35.0% | |
| AAATGAGTATTCAAAGCCCT+TGG | - | chr1_3:53546419-53546438 | None:intergenic | 35.0% | |
| CATCAACATTAGGAATCTCA+AGG | - | chr1_3:53546489-53546508 | None:intergenic | 35.0% | |
| CTTGAGATTCCTAATGTTGA+TGG | + | chr1_3:53546487-53546506 | Msa0125170:CDS | 35.0% | |
| ! | GGGATTTTTCCATCAACATT+AGG | - | chr1_3:53546499-53546518 | None:intergenic | 35.0% |
| TGATAAACACTTCCATTGTG+CGG | - | chr1_3:53546549-53546568 | None:intergenic | 35.0% | |
| ! | GCATTTTCTTCTAAGTTCTG+TGG | + | chr1_3:53546653-53546672 | Msa0125170:three_prime_UTR | 35.0% |
| GCATTATCGTTGATCATAGT+AGG | + | chr1_3:53546743-53546762 | Msa0125170:three_prime_UTR | 35.0% | |
| TCACGAATGCAACTAAAAGA+AGG | + | chr1_3:53546767-53546786 | Msa0125170:three_prime_UTR | 35.0% | |
| GTGCACTAGAATTACTCTTG+TGG | - | chr1_3:53541928-53541947 | None:intergenic | 40.0% | |
| TGTGAATAAGTGATCGCACT+AGG | - | chr1_3:53541977-53541996 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | + | chr1_3:53541978-53541997 | Msa0125170:CDS | 40.0% | |
| CAGACATGGTTAAAGGGTTA+TGG | - | chr1_3:53542022-53542041 | None:intergenic | 40.0% | |
| AAGTGTGTAACAAGTAGGAC+GGG | + | chr1_3:53542805-53542824 | Msa0125170:intron | 40.0% | |
| TCTCTCTCAAGAGGTAGAAT+GGG | - | chr1_3:53543988-53544007 | None:intergenic | 40.0% | |
| TTCTCTCTCAAGAGGTAGAA+TGG | - | chr1_3:53543989-53544008 | None:intergenic | 40.0% | |
| !! | TATTGTATGATGGTGGCAGA+TGG | + | chr1_3:53544180-53544199 | Msa0125170:intron | 40.0% |
| TTGTATGCAATTTCCTCACC+TGG | - | chr1_3:53544217-53544236 | None:intergenic | 40.0% | |
| CTCTTGAATATGGTGAGTTC+TGG | + | chr1_3:53544314-53544333 | Msa0125170:CDS | 40.0% | |
| AGAACCACTTGCCAAATCTT+TGG | + | chr1_3:53544360-53544379 | Msa0125170:CDS | 40.0% | |
| TCACCTCCAAAATTGCATAG+CGG | - | chr1_3:53544438-53544457 | None:intergenic | 40.0% | |
| ACAATCTGATCAAGGCAACA+TGG | + | chr1_3:53544458-53544477 | Msa0125170:CDS | 40.0% | |
| AGGCAGGACTTATCTCAATT+TGG | + | chr1_3:53544793-53544812 | Msa0125170:CDS | 40.0% | |
| TCAAACCCCGACTGAAATTA+TGG | + | chr1_3:53545002-53545021 | Msa0125170:CDS | 40.0% | |
| CACTTCCATAATTTCAGTCG+GGG | - | chr1_3:53545010-53545029 | None:intergenic | 40.0% | |
| TTGTGGTTCCACTAAAACAC+TGG | + | chr1_3:53545077-53545096 | Msa0125170:CDS | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | + | chr1_3:53545339-53545358 | Msa0125170:CDS | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | - | chr1_3:53545367-53545386 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | - | chr1_3:53545368-53545387 | None:intergenic | 40.0% | |
| TGTGGAGGAATGGAATGATA+AGG | + | chr1_3:53545369-53545388 | Msa0125170:CDS | 40.0% | |
| GTGGAGGAATGGAATGATAA+GGG | + | chr1_3:53545370-53545389 | Msa0125170:CDS | 40.0% | |
| TGGAGGAATGGAATGATAAG+GGG | + | chr1_3:53545371-53545390 | Msa0125170:CDS | 40.0% | |
| AAGTGATGCAACACATACCA+TGG | - | chr1_3:53545430-53545449 | None:intergenic | 40.0% | |
| !! | TTGCAACCATAAAAGGCATC+AGG | + | chr1_3:53545449-53545468 | Msa0125170:CDS | 40.0% |
| AGGCATCAGGTTCATAAAAG+AGG | + | chr1_3:53545462-53545481 | Msa0125170:CDS | 40.0% | |
| GCATTTCAAGCTGAATCCTT+TGG | + | chr1_3:53545489-53545508 | Msa0125170:CDS | 40.0% | |
| GTACTCAACACAACAACCAA+AGG | - | chr1_3:53545508-53545527 | None:intergenic | 40.0% | |
| GTTGTTGTGTTGAGTACACA+AGG | + | chr1_3:53545511-53545530 | Msa0125170:CDS | 40.0% | |
| GATTCATGTTTGGGGAGTAA+AGG | + | chr1_3:53545564-53545583 | Msa0125170:CDS | 40.0% | |
| CAATGACCCAAGAACTAATG+TGG | + | chr1_3:53545617-53545636 | Msa0125170:CDS | 40.0% | |
| TATATCAATGCCAACCAGCA+CGG | - | chr1_3:53545650-53545669 | None:intergenic | 40.0% | |
| TAAGTGGGTAAGTGTTTGGT+TGG | + | chr1_3:53545675-53545694 | Msa0125170:intron | 40.0% | |
| !! | CCTCCCTCTTCATTTTTCAA+AGG | - | chr1_3:53546030-53546049 | None:intergenic | 40.0% |
| ! | CCTTTGAAAAATGAAGAGGG+AGG | + | chr1_3:53546027-53546046 | Msa0125170:intron | 40.0% |
| GATGACACTGTCATCATTTG+TGG | + | chr1_3:53546049-53546068 | Msa0125170:CDS | 40.0% | |
| GTGGAGGTAAAGATAAGGAA+TGG | + | chr1_3:53546068-53546087 | Msa0125170:CDS | 40.0% | |
| GGAGTCTCAACAACAAAATG+TGG | + | chr1_3:53546177-53546196 | Msa0125170:CDS | 40.0% | |
| CATACAAAAATGAGTCAGGG+TGG | + | chr1_3:53546293-53546312 | Msa0125170:CDS | 40.0% | |
| GGTTCTATTGTGATTGCTGT+TGG | + | chr1_3:53546331-53546350 | Msa0125170:CDS | 40.0% | |
| ! | ATTGTGATTGCTGTTGGTCA+TGG | + | chr1_3:53546337-53546356 | Msa0125170:CDS | 40.0% |
| ! | TTGTGATTGCTGTTGGTCAT+GGG | + | chr1_3:53546338-53546357 | Msa0125170:CDS | 40.0% |
| CTGGACACTCAATAAAGTCT+GGG | - | chr1_3:53546519-53546538 | None:intergenic | 40.0% | |
| TCTGGACACTCAATAAAGTC+TGG | - | chr1_3:53546520-53546539 | None:intergenic | 40.0% | |
| !! | TGGAAGTGTTTATCAGCTAC+AGG | + | chr1_3:53546554-53546573 | Msa0125170:CDS | 40.0% |
| CTGCCATAATGGTTAGCATT+AGG | + | chr1_3:53546579-53546598 | Msa0125170:exon | 40.0% | |
| CTGCCTAATGCTAACCATTA+TGG | - | chr1_3:53546585-53546604 | None:intergenic | 40.0% | |
| TTAGCATTAGGCAGCTTCAT+GGG | + | chr1_3:53546591-53546610 | Msa0125170:exon | 40.0% | |
| CAACGATAATGCATGACTCT+TGG | - | chr1_3:53546735-53546754 | None:intergenic | 40.0% | |
| ! | CAACATGGGTTGAACGTGTA+AGG | - | chr1_3:53542136-53542155 | None:intergenic | 45.0% |
| TCAAGCAAGTGTGGAGCAAT+TGG | + | chr1_3:53542278-53542297 | Msa0125170:CDS | 45.0% | |
| TGCTAGATCGGTGATGTGAT+AGG | + | chr1_3:53544026-53544045 | Msa0125170:intron | 45.0% | |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | - | chr1_3:53544358-53544377 | None:intergenic | 45.0% |
| ATGGCCAAAGATTTGGCAAG+TGG | - | chr1_3:53544367-53544386 | None:intergenic | 45.0% | |
| ! | TTGAGGCACTCGCTTCATTA+TGG | - | chr1_3:53544386-53544405 | None:intergenic | 45.0% |
| !! | GATTCAGGTTTGGTGAGTTG+AGG | - | chr1_3:53544403-53544422 | None:intergenic | 45.0% |
| !!! | CGGTGTTTTTTGAGCGATTC+AGG | - | chr1_3:53544418-53544437 | None:intergenic | 45.0% |
| ! | ACACCGCTATGCAATTTTGG+AGG | + | chr1_3:53544432-53544451 | Msa0125170:CDS | 45.0% |
| GGAGGTGAACAATCTGATCA+AGG | + | chr1_3:53544450-53544469 | Msa0125170:CDS | 45.0% | |
| ! | TTTTAACAGGGAAGAGAGGC+AGG | + | chr1_3:53544777-53544796 | Msa0125170:intron | 45.0% |
| CCACAATAGATGGGTGTTTG+TGG | - | chr1_3:53545063-53545082 | None:intergenic | 45.0% | |
| CCACAAACACCCATCTATTG+TGG | + | chr1_3:53545060-53545079 | Msa0125170:CDS | 45.0% | |
| !!! | TGTGTTGGCTTCCTGTTTTC+TGG | - | chr1_3:53545330-53545349 | None:intergenic | 45.0% |
| GAAGCCAACACAAGATTGTG+TGG | + | chr1_3:53545338-53545357 | Msa0125170:CDS | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | - | chr1_3:53545345-53545364 | None:intergenic | 45.0% | |
| AGGAATGGAATGATAAGGGG+AGG | + | chr1_3:53545374-53545393 | Msa0125170:CDS | 45.0% | |
| CCATGGCATCTTAGACTTCA+AGG | - | chr1_3:53545413-53545432 | None:intergenic | 45.0% | |
| ! | CCTTGAAGTCTAAGATGCCA+TGG | + | chr1_3:53545410-53545429 | Msa0125170:CDS | 45.0% |
| GACACTGTCATCATTTGTGG+AGG | + | chr1_3:53546052-53546071 | Msa0125170:CDS | 45.0% | |
| TACTATGGCGCCATGATACT+TGG | - | chr1_3:53546107-53546126 | None:intergenic | 45.0% | |
| AAAGATGTGGTGAGCACCAA+GGG | + | chr1_3:53546400-53546419 | Msa0125170:CDS | 45.0% | |
| GTTAGCATTAGGCAGCTTCA+TGG | + | chr1_3:53546590-53546609 | Msa0125170:exon | 45.0% | |
| GCTTCATGGGTCTTTAGCAT+TGG | + | chr1_3:53546604-53546623 | Msa0125170:three_prime_UTR | 45.0% | |
| TCTTGGCTACATCACACAAG+GGG | - | chr1_3:53546718-53546737 | None:intergenic | 45.0% | |
| CTCTTGGCTACATCACACAA+GGG | - | chr1_3:53546719-53546738 | None:intergenic | 45.0% | |
| ACTCTTGGCTACATCACACA+AGG | - | chr1_3:53546720-53546739 | None:intergenic | 45.0% | |
| !!! | ATATTTTTAAGTAATATTTT+TGG | + | chr1_3:53542446-53542465 | Msa0125170:intron | 5.0% |
| !!! | ATATTTTTAACTTTATATAA+AGG | + | chr1_3:53544129-53544148 | Msa0125170:intron | 5.0% |
| GGTGAAGTGAAGTTAGCAGG+GGG | - | chr1_3:53542315-53542334 | None:intergenic | 50.0% | |
| CGGTGAAGTGAAGTTAGCAG+GGG | - | chr1_3:53542316-53542335 | None:intergenic | 50.0% | |
| GCGGTGAAGTGAAGTTAGCA+GGG | - | chr1_3:53542317-53542336 | None:intergenic | 50.0% | |
| AGCGGTGAAGTGAAGTTAGC+AGG | - | chr1_3:53542318-53542337 | None:intergenic | 50.0% | |
| GGGGGTTGTGTAGCTCAATT+GGG | - | chr1_3:53543485-53543504 | None:intergenic | 50.0% | |
| AGGGGGTTGTGTAGCTCAAT+TGG | - | chr1_3:53543486-53543505 | None:intergenic | 50.0% | |
| TACAGGGCGTGTAGCTCAAA+TGG | - | chr1_3:53543584-53543603 | None:intergenic | 50.0% | |
| CAACTCACGTCACGACATCA+AGG | + | chr1_3:53544516-53544535 | Msa0125170:CDS | 50.0% | |
| ACTGGGAATTGCTCCAAAGC+CGG | - | chr1_3:53544559-53544578 | None:intergenic | 50.0% | |
| GTCTTCTTGGCAGATGTCCA+AGG | - | chr1_3:53545275-53545294 | None:intergenic | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | + | chr1_3:53545351-53545370 | Msa0125170:CDS | 50.0% | |
| !! | AATGTGGGTTGATTCCGTGC+TGG | + | chr1_3:53545633-53545652 | Msa0125170:CDS | 50.0% |
| GGGTGGGCAATTGTAACCAA+AGG | + | chr1_3:53546310-53546329 | Msa0125170:CDS | 50.0% | |
| GAAAGATGTGGTGAGCACCA+AGG | + | chr1_3:53546399-53546418 | Msa0125170:CDS | 50.0% | |
| TCCAGATTGTCACCGCACAA+TGG | + | chr1_3:53546534-53546553 | Msa0125170:CDS | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | - | chr1_3:53546538-53546557 | None:intergenic | 50.0% | |
| ! | AGCTACAGGTGCTGCCATAA+TGG | + | chr1_3:53546568-53546587 | Msa0125170:CDS | 50.0% |
| ATGGTGGCAGATGGCATGCA+AGG | + | chr1_3:53544189-53544208 | Msa0125170:intron | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | + | chr1_3:53545354-53545373 | Msa0125170:CDS | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | + | chr1_3:53545359-53545378 | Msa0125170:CDS | 55.0% | |
| !! | TGGGTTGATTCCGTGCTGGT+TGG | + | chr1_3:53545637-53545656 | Msa0125170:CDS | 55.0% |
| CAGATGGCATGCAAGGCTCC+AGG | + | chr1_3:53544196-53544215 | Msa0125170:intron | 60.0% | |
| !! | GGAAGTGCCAGCTCTTGCAC+CGG | + | chr1_3:53544537-53544556 | Msa0125170:CDS | 60.0% |
| TCCAAAGCCGGTGCAAGAGC+TGG | - | chr1_3:53544547-53544566 | None:intergenic | 60.0% | |
| GGCATGCAAGGCTCCAGGTG+AGG | + | chr1_3:53544201-53544220 | Msa0125170:CDS | 65.0% | |
| !! | GCCAGCTCTTGCACCGGCTT+TGG | + | chr1_3:53544543-53544562 | Msa0125170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 53541876 | 53546921 | 53541876 | ID=Msa0125170;Name=Msa0125170 |
| chr1_3 | mRNA | 53541876 | 53546921 | 53541876 | ID=Msa0125170-mRNA-1;Parent=Msa0125170;Name=Msa0125170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=90|1|1|1|1|1|7|327|664 |
| chr1_3 | exon | 53541876 | 53542172 | 53541876 | ID=Msa0125170-mRNA-1:exon:16375;Parent=Msa0125170-mRNA-1 |
| chr1_3 | exon | 53542267 | 53542365 | 53542267 | ID=Msa0125170-mRNA-1:exon:16376;Parent=Msa0125170-mRNA-1 |
| chr1_3 | exon | 53544199 | 53544647 | 53544199 | ID=Msa0125170-mRNA-1:exon:16377;Parent=Msa0125170-mRNA-1 |
| chr1_3 | exon | 53544786 | 53544880 | 53544786 | ID=Msa0125170-mRNA-1:exon:16378;Parent=Msa0125170-mRNA-1 |
| chr1_3 | exon | 53544965 | 53545098 | 53544965 | ID=Msa0125170-mRNA-1:exon:16379;Parent=Msa0125170-mRNA-1 |
| chr1_3 | exon | 53545223 | 53545681 | 53545223 | ID=Msa0125170-mRNA-1:exon:16380;Parent=Msa0125170-mRNA-1 |
| chr1_3 | exon | 53546043 | 53546921 | 53546043 | ID=Msa0125170-mRNA-1:exon:16381;Parent=Msa0125170-mRNA-1 |
| chr1_3 | five_prime_UTR | 53541876 | 53541965 | 53541876 | ID=Msa0125170-mRNA-1:five_prime_utr;Parent=Msa0125170-mRNA-1 |
| chr1_3 | CDS | 53541966 | 53542172 | 53541966 | ID=Msa0125170-mRNA-1:cds;Parent=Msa0125170-mRNA-1 |
| chr1_3 | CDS | 53542267 | 53542365 | 53542267 | ID=Msa0125170-mRNA-1:cds;Parent=Msa0125170-mRNA-1 |
| chr1_3 | CDS | 53544199 | 53544647 | 53544199 | ID=Msa0125170-mRNA-1:cds;Parent=Msa0125170-mRNA-1 |
| chr1_3 | CDS | 53544786 | 53544880 | 53544786 | ID=Msa0125170-mRNA-1:cds;Parent=Msa0125170-mRNA-1 |
| chr1_3 | CDS | 53544965 | 53545098 | 53544965 | ID=Msa0125170-mRNA-1:cds;Parent=Msa0125170-mRNA-1 |
| chr1_3 | CDS | 53545223 | 53545681 | 53545223 | ID=Msa0125170-mRNA-1:cds;Parent=Msa0125170-mRNA-1 |
| chr1_3 | CDS | 53546043 | 53546594 | 53546043 | ID=Msa0125170-mRNA-1:cds;Parent=Msa0125170-mRNA-1 |
| chr1_3 | three_prime_UTR | 53546595 | 53546921 | 53546595 | ID=Msa0125170-mRNA-1:three_prime_utr;Parent=Msa0125170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
