Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169910 | XP_013468706.1 | 96.235 | 664 | 25 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169910 | sp|Q9SS87|SEOB_ARATH | 29.202 | 702 | 424 | 23 | 25 | 663 | 38 | 729 | 1.83e-87 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169910 | A0A072VMS7 | 96.235 | 664 | 25 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1321 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029920 | Msa0169910 | 0.925108 | 2.864674e-90 | -8.615850e-47 |
| Msa0077110 | Msa0169910 | 0.933209 | 2.659863e-95 | -8.615850e-47 |
| Msa0125170 | Msa0169910 | 0.912246 | 2.425089e-83 | -8.615850e-47 |
| Msa0169910 | Msa0212150 | 0.811252 | 7.682711e-51 | -8.615850e-47 |
| Msa0169910 | Msa0289920 | 0.803281 | 3.757797e-49 | -8.615850e-47 |
| Msa0169910 | Msa1431850 | 0.805846 | 1.096032e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169910 | MtrunA17_Chr1g0186861 | 94.880 | 664 | 34 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1305 |
| Msa0169910 | MtrunA17_Chr1g0186851 | 86.145 | 664 | 90 | 1 | 1 | 664 | 1 | 662 | 0.0 | 1187 |
| Msa0169910 | MtrunA17_Chr1g0186911 | 96.797 | 562 | 18 | 0 | 103 | 664 | 1 | 562 | 0.0 | 1127 |
| Msa0169910 | MtrunA17_Chr1g0187041 | 73.684 | 665 | 171 | 2 | 1 | 663 | 1 | 663 | 0.0 | 981 |
| Msa0169910 | MtrunA17_Chr1g0186841 | 58.459 | 662 | 265 | 7 | 5 | 663 | 9 | 663 | 0.0 | 781 |
| Msa0169910 | MtrunA17_Chr1g0165791 | 35.347 | 662 | 402 | 11 | 20 | 663 | 25 | 678 | 1.81e-139 | 424 |
| Msa0169910 | MtrunA17_Chr7g0226571 | 32.184 | 696 | 407 | 19 | 24 | 663 | 25 | 711 | 4.84e-104 | 332 |
| Msa0169910 | MtrunA17_Chr1g0187001 | 31.784 | 667 | 389 | 16 | 20 | 662 | 11 | 635 | 1.36e-100 | 321 |
| Msa0169910 | MtrunA17_Chr3g0116601 | 30.825 | 691 | 413 | 19 | 23 | 661 | 27 | 704 | 1.26e-96 | 312 |
| Msa0169910 | MtrunA17_Chr8g0381301 | 31.223 | 695 | 416 | 24 | 22 | 662 | 17 | 703 | 1.23e-94 | 307 |
| Msa0169910 | MtrunA17_Chr1g0186991 | 30.299 | 670 | 406 | 18 | 20 | 662 | 31 | 666 | 1.05e-93 | 303 |
| Msa0169910 | MtrunA17_Chr1g0186981 | 29.685 | 667 | 407 | 14 | 20 | 662 | 34 | 662 | 4.17e-88 | 289 |
| Msa0169910 | MtrunA17_Chr1g0186901 | 92.233 | 103 | 8 | 0 | 1 | 103 | 1 | 103 | 2.67e-60 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169910 | AT3G01680.1 | 29.202 | 702 | 424 | 23 | 25 | 663 | 38 | 729 | 1.86e-88 | 292 |
| Msa0169910 | AT3G01670.2 | 26.891 | 595 | 375 | 13 | 116 | 661 | 261 | 844 | 1.60e-56 | 206 |
| Msa0169910 | AT3G01670.1 | 26.891 | 595 | 375 | 13 | 116 | 661 | 237 | 820 | 2.55e-56 | 205 |
| Msa0169910 | AT1G67790.1 | 23.770 | 610 | 393 | 19 | 98 | 659 | 79 | 664 | 2.66e-39 | 154 |
Find 149 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATTATGGAAGTGTTTA+AGG | 0.151408 | 1_4:-53409967 | Msa0169910:CDS |
| CATTGATTCTTCTTTGGTTT+TGG | 0.159114 | 1_4:+53409382 | None:intergenic |
| AAAACACCGCTATGCAATTT+TGG | 0.175126 | 1_4:-53410543 | Msa0169910:CDS |
| TCAAACCCCGACTGAAATTA+TGG | 0.226152 | 1_4:-53409979 | Msa0169910:CDS |
| AAAATGTGGTTAACACCTTT+TGG | 0.226558 | 1_4:-53408285 | Msa0169910:CDS |
| TTGGGTCATTGATTCTTCTT+TGG | 0.230123 | 1_4:+53409376 | None:intergenic |
| CAACAATTCACCAAGTATTA+TGG | 0.234260 | 1_4:-53408382 | Msa0169910:CDS |
| CATCACTTTGCAACCATAAA+AGG | 0.238124 | 1_4:-53409539 | Msa0169910:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.255879 | 1_4:-53410403 | Msa0169910:CDS |
| GGAGGTTAACAATCTGATTA+AGG | 0.259837 | 1_4:-53410522 | Msa0169910:CDS |
| TGTTCATCAGACATGGTTAA+AGG | 0.274935 | 1_4:+53415535 | None:intergenic |
| CTTGAGATTCCTAATGTTGA+TGG | 0.279806 | 1_4:-53407989 | Msa0169910:CDS |
| ATTACTCTTGTGGGTTACTA+TGG | 0.280083 | 1_4:+53415646 | None:intergenic |
| ATTTCATATGATTCATGTTT+GGG | 0.287513 | 1_4:-53409426 | Msa0169910:CDS |
| CTGCCTAATGCTAACCATTA+TGG | 0.297378 | 1_4:+53407894 | None:intergenic |
| CTTCATTATGGCCAAAGATT+TGG | 0.304556 | 1_4:+53410601 | None:intergenic |
| CATGTCTGATGAACACATTT+TGG | 0.307791 | 1_4:-53415527 | Msa0169910:CDS |
| CTCTTGAATATGGTGAGTTC+TGG | 0.316509 | 1_4:-53410658 | Msa0169910:CDS |
| AGGCAGGACTTATCTCAATT+TGG | 0.322196 | 1_4:-53410188 | Msa0169910:CDS |
| AGAACCACTTGCCAAATCTT+TGG | 0.322840 | 1_4:-53410612 | Msa0169910:CDS |
| GCCAGCTCTTGCACCAGCTT+TGG | 0.325831 | 1_4:-53410429 | Msa0169910:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.325968 | 1_4:-53410402 | Msa0169910:CDS |
| TTGAGGCACTCGCTTCATTA+TGG | 0.326662 | 1_4:+53410589 | None:intergenic |
| CATTTCATATGATTCATGTT+TGG | 0.344991 | 1_4:-53409427 | Msa0169910:CDS |
| AATCAACCCACATTAGTTCT+TGG | 0.350415 | 1_4:+53409357 | None:intergenic |
| ATTCATGTTTGGGGAGTAAA+GGG | 0.351683 | 1_4:-53409416 | Msa0169910:CDS |
| ACAAGTTGTCAAACTATTCA+TGG | 0.354895 | 1_4:-53410715 | Msa0169910:CDS |
| AATAGTGGCATCATTTACTA+TGG | 0.358093 | 1_4:+53408357 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359855 | 1_4:+53410398 | None:intergenic |
| TTTAGTGGAACCACAATAGA+TGG | 0.364875 | 1_4:+53409911 | None:intergenic |
| TCATAGTTGAGATGTCTTCT+TGG | 0.373232 | 1_4:+53409696 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1_4:+53407941 | None:intergenic |
| TACTATGGCGCCATAATACT+TGG | 0.395719 | 1_4:+53408372 | None:intergenic |
| GCATTTCAAGCTGAATCCTT+TGG | 0.400511 | 1_4:-53409492 | Msa0169910:CDS |
| TTCAATTGAGTTGATTTGCT+TGG | 0.402147 | 1_4:-53408320 | Msa0169910:CDS |
| TCAAGCAAGTGTGGAGCAAT+TGG | 0.404063 | 1_4:-53415283 | Msa0169910:CDS |
| TCTGGACACTCAATAAAGTC+TGG | 0.413591 | 1_4:+53407959 | None:intergenic |
| CAGACATGGTTAAAGGGTTA+TGG | 0.416704 | 1_4:+53415542 | None:intergenic |
| GTGGAGGAATGGAATGATAA+GGG | 0.417645 | 1_4:-53409611 | Msa0169910:CDS |
| AGCTACAGGTGCTGCCATAA+TGG | 0.418677 | 1_4:-53407908 | Msa0169910:CDS |
| CATCAAACTTAGTGTCACTA+TGG | 0.419012 | 1_4:+53415482 | None:intergenic |
| AGCAATGACAATAGAACCTT+TGG | 0.422723 | 1_4:+53408150 | None:intergenic |
| TATGATCATATCCAGAAAAC+AGG | 0.424006 | 1_4:-53409665 | Msa0169910:CDS |
| CTGCCATAATGGTTAGCATT+AGG | 0.426200 | 1_4:-53407897 | Msa0169910:exon |
| AAACAACTGACCACAGAACT+TGG | 0.426998 | 1_4:+53407813 | None:intergenic |
| CCATGGCATCTTAGACTTCA+AGG | 0.428095 | 1_4:+53409571 | None:intergenic |
| TGCACTATAATTACTCTTGT+GGG | 0.430109 | 1_4:+53415637 | None:intergenic |
| CCACAATAGATGGGTGTTTG+TGG | 0.437219 | 1_4:+53409921 | None:intergenic |
| ATCAACCCACATTAGTTCTT+GGG | 0.438934 | 1_4:+53409358 | None:intergenic |
| GATTCATGTTTGGGGAGTAA+AGG | 0.439109 | 1_4:-53409417 | Msa0169910:CDS |
| TTGTATGCAATTTCCTCACC+TGG | 0.440380 | 1_4:+53410758 | None:intergenic |
| AGTCTTTGTCTGCTTAATAG+TGG | 0.440642 | 1_4:+53408342 | None:intergenic |
| GTTAGCATTAGGCAGCTTCA+TGG | 0.445244 | 1_4:-53407886 | Msa0169910:exon |
| ATTGTCATTGCTGTTGGTCA+TGG | 0.450579 | 1_4:-53408139 | Msa0169910:CDS |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_4:+53409617 | None:intergenic |
| GTTCATCAGACATGGTTAAA+GGG | 0.454129 | 1_4:+53415536 | None:intergenic |
| GCATTATCGTTGATCATAGT+AGG | 0.454901 | 1_4:-53407732 | Msa0169910:three_prime_UTR |
| CACAGTTTACATTATTCAGT+TGG | 0.458366 | 1_4:+53407572 | None:intergenic |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_4:+53415428 | None:intergenic |
| ACACTTCCATAATTTCAGTC+GGG | 0.466104 | 1_4:+53409973 | None:intergenic |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.469770 | 1_4:+53410428 | None:intergenic |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1_4:-53410704 | Msa0169910:CDS |
| GTTCTTGTTCATTTCAACCT+TGG | 0.474812 | 1_4:-53409726 | Msa0169910:CDS |
| GTGCACTATAATTACTCTTG+TGG | 0.476203 | 1_4:+53415636 | None:intergenic |
| GGTTCTATTGTCATTGCTGT+TGG | 0.478659 | 1_4:-53408145 | Msa0169910:CDS |
| TTGCAACCATAAAAGGCATC+AGG | 0.479822 | 1_4:-53409532 | Msa0169910:CDS |
| TTGTCATTGCTGTTGGTCAT+GGG | 0.479882 | 1_4:-53408138 | Msa0169910:CDS |
| TGTGGAGGAATGGAATGATA+AGG | 0.480677 | 1_4:-53409612 | Msa0169910:CDS |
| AGCGGTGAAGTGAAGTTAGC+AGG | 0.483068 | 1_4:+53415246 | None:intergenic |
| CATTTGCAGAGTTTGACAAA+TGG | 0.486055 | 1_4:-53408099 | Msa0169910:CDS |
| GATGACACTGTCATCATTTG+TGG | 0.486509 | 1_4:-53408427 | Msa0169910:CDS |
| TGTTTCCAGCAATGTTGAAA+AGG | 0.490292 | 1_4:+53415452 | None:intergenic |
| GCATTGATATAAAGATTAAG+TGG | 0.490685 | 1_4:-53409322 | Msa0169910:CDS |
| GATTGATATCATCATTGAGT+TGG | 0.493959 | 1_4:-53410486 | Msa0169910:CDS |
| CAGATGGCATGCAAGGCTCC+AGG | 0.494131 | 1_4:-53410776 | Msa0169910:CDS |
| CAACGATAATGCATGACTCT+TGG | 0.494272 | 1_4:+53407743 | None:intergenic |
| GCAGAGTTAAAACTATCAAA+TGG | 0.503065 | 1_4:+53407627 | None:intergenic |
| GCTTCATGGGTCTTTAGCAT+TGG | 0.503598 | 1_4:-53407872 | Msa0169910:three_prime_UTR |
| ACTGGGAATTGCTCCAAAGC+TGG | 0.505702 | 1_4:+53410416 | None:intergenic |
| AACACTTCCATAATTTCAGT+CGG | 0.506807 | 1_4:+53409972 | None:intergenic |
| TGGAAGTGTTTATCAGCTAC+AGG | 0.511091 | 1_4:-53407922 | Msa0169910:CDS |
| CTGAGTAACAATTGCAACAA+TGG | 0.516089 | 1_4:+53410370 | None:intergenic |
| TCTTGGCTACATCACACAAA+GGG | 0.516576 | 1_4:+53407760 | None:intergenic |
| TTTGAAGAAAATTAATTCTG+AGG | 0.522629 | 1_4:-53415217 | Msa0169910:intron |
| AAATGAGTATTCAAAGCCCT+TGG | 0.526373 | 1_4:+53408060 | None:intergenic |
| TTGTGGTTCCACTAAAACAC+TGG | 0.527106 | 1_4:-53409904 | Msa0169910:intron |
| CAATGACCCAAGAACTAATG+TGG | 0.529258 | 1_4:-53409364 | Msa0169910:CDS |
| AGGCATCAGGTTCATAAAAG+AGG | 0.531058 | 1_4:-53409519 | Msa0169910:CDS |
| TCACAAATCACTATACAGAT+TGG | 0.534352 | 1_4:-53410122 | Msa0169910:intron |
| ATCATTCCATTCCTCCACAA+TGG | 0.536453 | 1_4:+53409616 | None:intergenic |
| CAAGTTGTCAAACTATTCAT+GGG | 0.542393 | 1_4:-53410714 | Msa0169910:CDS |
| GTGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_4:-53408408 | Msa0169910:CDS |
| CTGGACACTCAATAAAGTCT+GGG | 0.551291 | 1_4:+53407960 | None:intergenic |
| CAAAATGTGTTCATCAGACA+TGG | 0.554726 | 1_4:+53415528 | None:intergenic |
| GCGGTGAAGTGAAGTTAGCA+GGG | 0.555690 | 1_4:+53415247 | None:intergenic |
| GATTCAGGTTTGGTGAGTTG+AGG | 0.558486 | 1_4:+53410572 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1_4:-53410154 | Msa0169910:CDS |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.559865 | 1_4:+53410617 | None:intergenic |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_4:-53409622 | Msa0169910:CDS |
| TTAGCATTAGGCAGCTTCAT+GGG | 0.566452 | 1_4:-53407885 | Msa0169910:exon |
| CAACTCACGTCACGACATCA+AGG | 0.567567 | 1_4:-53410456 | Msa0169910:CDS |
| CATTGATATAAAGATTAAGT+GGG | 0.567772 | 1_4:-53409321 | Msa0169910:intron |
| AAAGATGTGGTGAGCACCAA+GGG | 0.568763 | 1_4:-53408076 | Msa0169910:CDS |
| GTCTTCTTGGCAGATGTCCA+AGG | 0.571060 | 1_4:+53409709 | None:intergenic |
| CATCAACATTAGGAATCTCA+AGG | 0.576608 | 1_4:+53407990 | None:intergenic |
| ATGGCCAAAGATTTGGCAAG+TGG | 0.577101 | 1_4:+53410608 | None:intergenic |
| CACTTCCATAATTTCAGTCG+GGG | 0.578548 | 1_4:+53409974 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1_4:+53415587 | None:intergenic |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_4:+53409639 | None:intergenic |
| CATTTGTGGAGGTAAAGATA+AGG | 0.582924 | 1_4:-53408413 | Msa0169910:CDS |
| CCTTGAAGTCTAAGATGCCA+TGG | 0.584604 | 1_4:-53409571 | Msa0169910:CDS |
| TCACGAATGCAACTAAAAGA+AGG | 0.586356 | 1_4:-53407708 | Msa0169910:three_prime_UTR |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_4:-53409630 | Msa0169910:CDS |
| CACAAAGTTATCAACAACAT+GGG | 0.594338 | 1_4:+53415414 | None:intergenic |
| CCACAAACACCCATCTATTG+TGG | 0.594377 | 1_4:-53409921 | Msa0169910:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.596089 | 1_4:-53409643 | Msa0169910:CDS |
| AATGTGGGTTGATTCCGTGC+TGG | 0.599556 | 1_4:-53409348 | Msa0169910:CDS |
| GCACAAAGTTATCAACAACA+TGG | 0.600378 | 1_4:+53415413 | None:intergenic |
| TTAGTGGAACCACAATAGAT+GGG | 0.601002 | 1_4:+53409912 | None:intergenic |
| TGGGTTGATTCCGTGCTGGT+TGG | 0.605127 | 1_4:-53409344 | Msa0169910:CDS |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1_4:-53415583 | Msa0169910:CDS |
| CTCTTGGCTACATCACACAA+AGG | 0.612383 | 1_4:+53407759 | None:intergenic |
| GGAGTCTCAACAACAAAATG+TGG | 0.614411 | 1_4:-53408299 | Msa0169910:CDS |
| TATATCAATGCCAACCAGCA+CGG | 0.619216 | 1_4:+53409334 | None:intergenic |
| GGGTGGGCAATTGTAACCAA+AGG | 0.622664 | 1_4:-53408166 | Msa0169910:CDS |
| TTTCATATGATTCATGTTTG+GGG | 0.624357 | 1_4:-53409425 | Msa0169910:CDS |
| AATGACCCAAGAACTAATGT+GGG | 0.624567 | 1_4:-53409363 | Msa0169910:CDS |
| ACATGAATATCAAGCAAGTG+TGG | 0.629780 | 1_4:-53415292 | Msa0169910:CDS |
| GGCATGCAAGGCTCCAGGTG+AGG | 0.630978 | 1_4:-53410771 | Msa0169910:CDS |
| AGGAATGGAATGATAAGGGG+AGG | 0.635212 | 1_4:-53409607 | Msa0169910:CDS |
| ATGGTGGCAGATGGCATGCA+AGG | 0.637627 | 1_4:-53410783 | Msa0169910:intron |
| TGGAGGAATGGAATGATAAG+GGG | 0.637916 | 1_4:-53409610 | Msa0169910:CDS |
| ACAATCTGATTAAGGCAACA+TGG | 0.639246 | 1_4:-53410514 | Msa0169910:CDS |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1_4:-53407942 | Msa0169910:CDS |
| GAAAGATGTGGTGAGCACCA+AGG | 0.642800 | 1_4:-53408077 | Msa0169910:CDS |
| GACACTGTCATCATTTGTGG+AGG | 0.653594 | 1_4:-53408424 | Msa0169910:CDS |
| AAGTGATGCAACACATACCA+TGG | 0.654990 | 1_4:+53409554 | None:intergenic |
| CGGTGAAGTGAAGTTAGCAG+GGG | 0.658379 | 1_4:+53415248 | None:intergenic |
| GTTGTTGTGTTGAGTACACA+AGG | 0.659541 | 1_4:-53409470 | Msa0169910:CDS |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1_4:+53410399 | None:intergenic |
| GTACTCAACACAACAACCAA+AGG | 0.668954 | 1_4:+53409476 | None:intergenic |
| CTTGGCTACATCACACAAAG+GGG | 0.672326 | 1_4:+53407761 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.674200 | 1_4:-53409642 | Msa0169910:CDS |
| TGATAAACACTTCCATTGTG+CGG | 0.679237 | 1_4:+53407930 | None:intergenic |
| AAACTTACGAATCAGTAGTG+AGG | 0.684196 | 1_4:+53410339 | None:intergenic |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_4:-53409627 | Msa0169910:CDS |
| GTTTGACAAATGGAAAGATG+TGG | 0.704359 | 1_4:-53408089 | Msa0169910:CDS |
| GGTGAAGTGAAGTTAGCAGG+GGG | 0.723578 | 1_4:+53415249 | None:intergenic |
| TAACCTCCAAAATTGCATAG+CGG | 0.752415 | 1_4:+53410537 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATAATAATTTTTTTA+AGG | + | chr1_4:53409457-53409476 | None:intergenic | 0.0% |
| !!! | TAAAAAAGAAATTTTCATTA+TGG | + | chr1_4:53408401-53408420 | None:intergenic | 10.0% |
| !!! | CAAATTTTTTATTTTTCTTT+TGG | - | chr1_4:53408990-53409009 | Msa0169910:intron | 10.0% |
| !! | AATAAAATGCAATATATAAT+TGG | - | chr1_4:53409634-53409653 | Msa0169910:CDS | 10.0% |
| !! | AAATATTATAAGAGAAAATT+CGG | - | chr1_4:53409732-53409751 | Msa0169910:CDS | 10.0% |
| !! | AAATATTGTCAAAAAAAAAA+AGG | - | chr1_4:53409818-53409837 | Msa0169910:intron | 10.0% |
| !! | AAAATATTGTCAAAAAATTA+AGG | - | chr1_4:53409887-53409906 | Msa0169910:intron | 10.0% |
| !! | AAAATATTGTCAAAAAAAAA+AGG | - | chr1_4:53409817-53409836 | Msa0169910:intron | 10.0% |
| !!! | ATTATGAATTAATTTAAAAC+GGG | + | chr1_4:53410265-53410284 | None:intergenic | 10.0% |
| !! | AAAATTTCTTAAAAGAAAAA+CGG | + | chr1_4:53410415-53410434 | None:intergenic | 10.0% |
| !! | TTATAATCAGATTTAATAAA+AGG | + | chr1_4:53411616-53411635 | None:intergenic | 10.0% |
| !! | TATACTATTAATTTAATGAA+TGG | + | chr1_4:53411716-53411735 | None:intergenic | 10.0% |
| !! | AAATTAATAGTATATCTAAA+TGG | - | chr1_4:53411722-53411741 | Msa0169910:intron | 10.0% |
| !!! | TTACTAAAGATTTTTTTTTT+AGG | + | chr1_4:53411944-53411963 | None:intergenic | 10.0% |
| !!! | TTTTAATTATGTACTTATTT+GGG | + | chr1_4:53412209-53412228 | None:intergenic | 10.0% |
| !!! | TTTTTAATTATGTACTTATT+TGG | + | chr1_4:53412210-53412229 | None:intergenic | 10.0% |
| !! | ATAAAGTTAAAAATATTACA+GGG | + | chr1_4:53412414-53412433 | None:intergenic | 10.0% |
| !! | TATAAAGTTAAAAATATTAC+AGG | + | chr1_4:53412415-53412434 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | - | chr1_4:53414404-53414423 | Msa0169910:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | - | chr1_4:53414405-53414424 | Msa0169910:intron | 10.0% |
| !!! | CTTTTTCAAAAAAAAAAAGA+AGG | + | chr1_4:53409333-53409352 | None:intergenic | 15.0% |
| !! | TGTAGCAAAATTAATAAATA+AGG | - | chr1_4:53410098-53410117 | Msa0169910:intron | 15.0% |
| !! | TAAATAAGGATGTAAAAAAA+AGG | - | chr1_4:53410112-53410131 | Msa0169910:intron | 15.0% |
| !!! | TCTTTTAAGAAATTTTGATT+TGG | - | chr1_4:53410419-53410438 | Msa0169910:CDS | 15.0% |
| !! | TTAAAGATAAAAATATGCAT+TGG | + | chr1_4:53410510-53410529 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTTACTTTTT+AGG | - | chr1_4:53410629-53410648 | Msa0169910:CDS | 15.0% |
| !! | TTTAGAAAATTCTCATATAA+TGG | - | chr1_4:53411446-53411465 | Msa0169910:intron | 15.0% |
| !!! | ATTTAATAAAAGGATGTTTT+CGG | + | chr1_4:53411606-53411625 | None:intergenic | 15.0% |
| !! | TTTAAAAATAAAATACTAGC+AGG | - | chr1_4:53411668-53411687 | Msa0169910:intron | 15.0% |
| !! | TACTAAAGAAAAAAAGTTAT+GGG | + | chr1_4:53411919-53411938 | None:intergenic | 15.0% |
| !! | ATACTAAAGAAAAAAAGTTA+TGG | + | chr1_4:53411920-53411939 | None:intergenic | 15.0% |
| !! | TTCCATAAAAATCATATAAA+TGG | - | chr1_4:53411987-53412006 | Msa0169910:intron | 15.0% |
| !!! | TTTTTTTAGAGGAATATAAA+TGG | - | chr1_4:53412016-53412035 | Msa0169910:intron | 15.0% |
| !! | AATGAATATTGGAAAATTAA+AGG | - | chr1_4:53412372-53412391 | Msa0169910:intron | 15.0% |
| !!! | TTTAACTTTATATAAAGGTT+TGG | - | chr1_4:53412423-53412442 | Msa0169910:intron | 15.0% |
| !!! | TGAATGTTTTATATTTAAAC+AGG | - | chr1_4:53413481-53413500 | Msa0169910:intron | 15.0% |
| !! | TTTATACTATTATTAGTACA+TGG | + | chr1_4:53414054-53414073 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | + | chr1_4:53414120-53414139 | None:intergenic | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr1_4:53414481-53414500 | Msa0169910:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | + | chr1_4:53414519-53414538 | None:intergenic | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | + | chr1_4:53414557-53414576 | None:intergenic | 15.0% |
| !! | AATATAGGTAAATATTACTT+TGG | + | chr1_4:53414645-53414664 | None:intergenic | 15.0% |
| !!! | TTAACTTGTTTGTTTATTAC+AGG | - | chr1_4:53407945-53407964 | Msa0169910:CDS | 20.0% |
| !!! | TAACTTGTTTGTTTATTACA+GGG | - | chr1_4:53407946-53407965 | Msa0169910:CDS | 20.0% |
| !! | TTTGAAGAAAATTAATTCTG+AGG | - | chr1_4:53408044-53408063 | Msa0169910:CDS | 20.0% |
| !!! | AAAATGTGTGTTTTATTTAG+AGG | - | chr1_4:53408287-53408306 | Msa0169910:CDS | 20.0% |
| !!! | TCTTTTAAATTGTGATAAAC+GGG | + | chr1_4:53408633-53408652 | None:intergenic | 20.0% |
| !!! | CTCTTTTAAATTGTGATAAA+CGG | + | chr1_4:53408634-53408653 | None:intergenic | 20.0% |
| !!! | AGAAAAACATTTTCTATAAC+TGG | - | chr1_4:53408724-53408743 | Msa0169910:intron | 20.0% |
| !!! | AAAAGAGCTTATATTCTTTT+TGG | + | chr1_4:53408895-53408914 | None:intergenic | 20.0% |
| !!! | CTCATTAACTTTTTTTCTTT+CGG | - | chr1_4:53409251-53409270 | Msa0169910:intron | 20.0% |
| !! | GCAAAAAAATAGAAATATGT+TGG | + | chr1_4:53409548-53409567 | None:intergenic | 20.0% |
| !! | TTATTTACCGAATTATTGAT+AGG | + | chr1_4:53409762-53409781 | None:intergenic | 20.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | - | chr1_4:53410012-53410031 | Msa0169910:CDS | 20.0% |
| !! | CAGAACAATTAATAAAAAAG+TGG | + | chr1_4:53410178-53410197 | None:intergenic | 20.0% |
| !!! | GTGTATTTTTATTCTTTTCT+TGG | + | chr1_4:53410238-53410257 | None:intergenic | 20.0% |
| !!! | TCTTTTTCATGTAAAACTAA+AGG | - | chr1_4:53410288-53410307 | Msa0169910:intron | 20.0% |
| !! | TCAACTAGATTATCTAATAA+GGG | + | chr1_4:53410473-53410492 | None:intergenic | 20.0% |
| !! | TATTCAAATAATGAAGTATG+TGG | - | chr1_4:53410654-53410673 | Msa0169910:CDS | 20.0% |
| !! | TAAAAGACTAATGATATATG+TGG | + | chr1_4:53410693-53410712 | None:intergenic | 20.0% |
| !!! | ATCTTCTAAAGATTAACTTT+CGG | + | chr1_4:53410730-53410749 | None:intergenic | 20.0% |
| !! | TTTGAATGATTCTTATAGAA+GGG | - | chr1_4:53410837-53410856 | Msa0169910:intron | 20.0% |
| !! | CATTATATGAGAATATTTCA+AGG | + | chr1_4:53410935-53410954 | None:intergenic | 20.0% |
| !!! | ATTTTATGAGAATGTTTCAA+AGG | + | chr1_4:53410966-53410985 | None:intergenic | 20.0% |
| !! | ATTCTATGAGAATATTCTAA+AGG | + | chr1_4:53411188-53411207 | None:intergenic | 20.0% |
| !!! | TTTAGAATATTCTCATAGAA+TGG | - | chr1_4:53411187-53411206 | Msa0169910:intron | 20.0% |
| !! | TTTGAATAATTCTCATAGAA+CGG | - | chr1_4:53411219-53411238 | Msa0169910:intron | 20.0% |
| !! | TTTAGAAGATTCTCATAAAA+CGG | - | chr1_4:53411382-53411401 | Msa0169910:intron | 20.0% |
| !!! | GACCATTTATATGATTTTTA+TGG | + | chr1_4:53411992-53412011 | None:intergenic | 20.0% |
| !! | AGCTATTTATGTAATAACTT+AGG | - | chr1_4:53412049-53412068 | Msa0169910:intron | 20.0% |
| !!! | TTACTAACCTTTTTTTTAAC+AGG | - | chr1_4:53413044-53413063 | Msa0169910:intron | 20.0% |
| !!! | TACTAACCTTTTTTTTAACA+GGG | - | chr1_4:53413045-53413064 | Msa0169910:intron | 20.0% |
| !! | AAAATAATTTCCTTCAGTAT+GGG | + | chr1_4:53413215-53413234 | None:intergenic | 20.0% |
| !! | TAAAATAATTTCCTTCAGTA+TGG | + | chr1_4:53413216-53413235 | None:intergenic | 20.0% |
| !! | ATTTCATATGATTCATGTTT+GGG | - | chr1_4:53413835-53413854 | Msa0169910:intron | 20.0% |
| !! | CATTGATATAAAGATTAAGT+GGG | - | chr1_4:53413940-53413959 | Msa0169910:intron | 20.0% |
| !! | TAAATTAATAATGTCAGAAC+CGG | - | chr1_4:53414098-53414117 | Msa0169910:intron | 20.0% |
| !!! | AGAGATCCATTTATAATTTT+TGG | + | chr1_4:53414432-53414451 | None:intergenic | 20.0% |
| !! | GTAAATATTACTTTGGATTT+AGG | + | chr1_4:53414638-53414657 | None:intergenic | 20.0% |
| !! | ATAATTATGTCTCACAATAT+AGG | + | chr1_4:53414660-53414679 | None:intergenic | 20.0% |
| !!! | CTTTTTTCTCTGAATCAATA+TGG | - | chr1_4:53407647-53407666 | Msa0169910:three_prime_UTR | 25.0% |
| ! | TAAAAAAAGAACGTAGAGAT+AGG | + | chr1_4:53407893-53407912 | None:intergenic | 25.0% |
| ! | TTTACATGTAGTTTAGCATA+TGG | + | chr1_4:53408092-53408111 | None:intergenic | 25.0% |
| !!! | TATTTTTGGTACAAATCATG+TGG | - | chr1_4:53408160-53408179 | Msa0169910:CDS | 25.0% |
| !! | CTTTTTGGATAGATTAATCT+TGG | + | chr1_4:53408880-53408899 | None:intergenic | 25.0% |
| !!! | GACACTCATGATTTTTTTTT+TGG | + | chr1_4:53409077-53409096 | None:intergenic | 25.0% |
| !!! | GTGTTTTATTTTGTCTACTA+CGG | + | chr1_4:53409689-53409708 | None:intergenic | 25.0% |
| ! | AACATAATAAAGCAAATGAG+AGG | - | chr1_4:53410048-53410067 | Msa0169910:intron | 25.0% |
| ! | ACATAATAAAGCAAATGAGA+GGG | - | chr1_4:53410049-53410068 | Msa0169910:intron | 25.0% |
| ! | AAATTAGGTTAAGTTATTGC+AGG | - | chr1_4:53410075-53410094 | Msa0169910:intron | 25.0% |
| !! | ATGAATTAATTTAAAACGGG+AGG | + | chr1_4:53410262-53410281 | None:intergenic | 25.0% |
| ! | TGTTATCGCAATAAAAATAG+CGG | + | chr1_4:53410377-53410396 | None:intergenic | 25.0% |
| ! | GTCAACTAGATTATCTAATA+AGG | + | chr1_4:53410474-53410493 | None:intergenic | 25.0% |
| ! | TGCTTATAATTAGAAACAGA+GGG | + | chr1_4:53410616-53410635 | None:intergenic | 25.0% |
| ! | TTGCTTATAATTAGAAACAG+AGG | + | chr1_4:53410617-53410636 | None:intergenic | 25.0% |
| ! | TTTGAAAGATTCTCATAGAA+CGG | - | chr1_4:53410772-53410791 | Msa0169910:CDS | 25.0% |
| ! | TTTAGAAGATTCTCATAGAA+CGG | - | chr1_4:53410805-53410824 | Msa0169910:intron | 25.0% |
| ! | CTTTGAATGATTCTTATAGA+AGG | - | chr1_4:53410836-53410855 | Msa0169910:intron | 25.0% |
| ! | TTTAGAAAAATCTCATTGAG+TGG | - | chr1_4:53410869-53410888 | Msa0169910:intron | 25.0% |
| ! | AAACATTCTCATAAAATGAG+AGG | - | chr1_4:53410969-53410988 | Msa0169910:intron | 25.0% |
| !! | CATTTTATGAGAATCTTTCA+AGG | + | chr1_4:53411124-53411143 | None:intergenic | 25.0% |
| ! | GTTCTATGAGAATTATTCAA+AGG | + | chr1_4:53411220-53411239 | None:intergenic | 25.0% |
| ! | TTTAGAAGATTCTCATAGAA+CGG | - | chr1_4:53410805-53410824 | Msa0169910:intron | 25.0% |
| !! | TAATCTTTGAAAGATTCTCA+TGG | - | chr1_4:53411310-53411329 | Msa0169910:intron | 25.0% |
| ! | TTTGAAAGATTCTCATAGAA+CGG | - | chr1_4:53410772-53410791 | Msa0169910:CDS | 25.0% |
| ! | GTTCTATCAGAATCATTTAA+AGG | + | chr1_4:53411415-53411434 | None:intergenic | 25.0% |
| ! | AATGATAGTTAATCCTTGAA+AGG | - | chr1_4:53411496-53411515 | Msa0169910:intron | 25.0% |
| !! | AATTTTCATTACACCTTTCA+AGG | + | chr1_4:53411512-53411531 | None:intergenic | 25.0% |
| ! | AGTTGGAAAAATTGTGAAAA+TGG | + | chr1_4:53411580-53411599 | None:intergenic | 25.0% |
| ! | AATAAAACAAAGATCATGCA+TGG | - | chr1_4:53411773-53411792 | Msa0169910:intron | 25.0% |
| ! | TAACAAACTCATGATTTACA+GGG | + | chr1_4:53411887-53411906 | None:intergenic | 25.0% |
| !!! | AATGGTCGTTTTTTTTTTAG+AGG | - | chr1_4:53412005-53412024 | Msa0169910:intron | 25.0% |
| ! | TTGTTGTATACTTTATATGC+AGG | + | chr1_4:53412094-53412113 | None:intergenic | 25.0% |
| ! | AATTATGTACTTATTTGGGA+AGG | + | chr1_4:53412205-53412224 | None:intergenic | 25.0% |
| ! | TAATCCCACGAATATAATAT+TGG | - | chr1_4:53412240-53412259 | Msa0169910:intron | 25.0% |
| ! | TGCACATTGTATATGAATAA+CGG | - | chr1_4:53412446-53412465 | Msa0169910:intron | 25.0% |
| !! | ACCTTTTACATAATCTAAGT+TGG | - | chr1_4:53412997-53413016 | Msa0169910:intron | 25.0% |
| !!! | TGAAATTATGGAAGTGTTTA+AGG | - | chr1_4:53413294-53413313 | Msa0169910:intron | 25.0% |
| !!! | CTTCACTTTTTAATCTAGTT+TGG | - | chr1_4:53413456-53413475 | Msa0169910:intron | 25.0% |
| ! | CATTTCATATGATTCATGTT+TGG | - | chr1_4:53413834-53413853 | Msa0169910:intron | 25.0% |
| ! | TTTCATATGATTCATGTTTG+GGG | - | chr1_4:53413836-53413855 | Msa0169910:intron | 25.0% |
| !! | GCATTGATATAAAGATTAAG+TGG | - | chr1_4:53413939-53413958 | Msa0169910:intron | 25.0% |
| ! | ACTATACATACCAAACAAAA+AGG | - | chr1_4:53414200-53414219 | Msa0169910:intron | 25.0% |
| ! | TTGGGACCAAAAATTATAAA+TGG | - | chr1_4:53414423-53414442 | Msa0169910:intron | 25.0% |
| ! | TCTGATAATATTACATCATG+TGG | - | chr1_4:53414603-53414622 | Msa0169910:intron | 25.0% |
| ! | ATTTCCATTGAAAAATGAAG+AGG | - | chr1_4:53414808-53414827 | Msa0169910:intron | 25.0% |
| ! | TTTCCATTGAAAAATGAAGA+GGG | - | chr1_4:53414809-53414828 | Msa0169910:intron | 25.0% |
| ! | TTTCATACAAAAATGAGTCA+GGG | - | chr1_4:53415075-53415094 | Msa0169910:intron | 25.0% |
| ! | AAGATTTTGTGTGTTTTGTC+TGG | + | chr1_4:53407585-53407604 | None:intergenic | 30.0% |
| TGCACTATAATTACTCTTGT+GGG | + | chr1_4:53407627-53407646 | None:intergenic | 30.0% | |
| CACAAAGTTATCAACAACAT+GGG | + | chr1_4:53407850-53407869 | None:intergenic | 30.0% | |
| ! | ATTTTCTTCAAAGTACACAG+CGG | + | chr1_4:53408036-53408055 | None:intergenic | 30.0% |
| ! | AAAGAAAGTGTGTAACAAGT+AGG | - | chr1_4:53408516-53408535 | Msa0169910:intron | 30.0% |
| !! | AGAGAGATCAGTTTGTTATT+AGG | + | chr1_4:53408829-53408848 | None:intergenic | 30.0% |
| ACTGATCTCTCTATTAAAGA+TGG | - | chr1_4:53408837-53408856 | Msa0169910:intron | 30.0% | |
| AACAAACTCATGGGATTATA+GGG | + | chr1_4:53409221-53409240 | None:intergenic | 30.0% | |
| TAACAAACTCATGGGATTAT+AGG | + | chr1_4:53409222-53409241 | None:intergenic | 30.0% | |
| CAATGTTGTAACAAACTCAT+GGG | + | chr1_4:53409230-53409249 | None:intergenic | 30.0% | |
| TCAATGTTGTAACAAACTCA+TGG | + | chr1_4:53409231-53409250 | None:intergenic | 30.0% | |
| TAGTTTAGTGAGCATAATTC+AGG | - | chr1_4:53409497-53409516 | Msa0169910:CDS | 30.0% | |
| CGGTAATCCTATCAATAATT+CGG | - | chr1_4:53409752-53409771 | Msa0169910:CDS | 30.0% | |
| GTCAAAAAAAAAAAGGCAAG+AGG | - | chr1_4:53409825-53409844 | Msa0169910:intron | 30.0% | |
| AAAAAAAAAGGCAAGAGGAT+AGG | - | chr1_4:53409830-53409849 | Msa0169910:intron | 30.0% | |
| TGTCAAAAAATTAAGGCAAG+AGG | - | chr1_4:53409894-53409913 | Msa0169910:intron | 30.0% | |
| TGTCAAAAAAAAAAGGCAAG+AGG | - | chr1_4:53409963-53409982 | Msa0169910:CDS | 30.0% | |
| AAAAAAAAAGGCAAGAGGAT+AGG | - | chr1_4:53409830-53409849 | Msa0169910:intron | 30.0% | |
| !!! | GTGTGATGCATTTTTTTAGA+TGG | - | chr1_4:53410001-53410020 | Msa0169910:CDS | 30.0% |
| CAAATGAGAGGGAAAAAATT+AGG | - | chr1_4:53410060-53410079 | Msa0169910:intron | 30.0% | |
| ATTGTTTAATAGCTATCGAC+CGG | + | chr1_4:53410144-53410163 | None:intergenic | 30.0% | |
| CTAGATTATCTAATAAGGGA+CGG | + | chr1_4:53410469-53410488 | None:intergenic | 30.0% | |
| TTGAAAGATTCTCATAGAAC+GGG | - | chr1_4:53410773-53410792 | Msa0169910:CDS | 30.0% | |
| ! | TAGTCTTTAGAAGATTCTCA+TGG | - | chr1_4:53410800-53410819 | Msa0169910:intron | 30.0% |
| TTTAGAAGATTCTCATGGAA+CGG | - | chr1_4:53410998-53411017 | Msa0169910:intron | 30.0% | |
| AAAGATTCTCATAGAATGAG+AGG | - | chr1_4:53411158-53411177 | Msa0169910:intron | 30.0% | |
| GTAACAAACTCATGATTTAC+AGG | + | chr1_4:53411888-53411907 | None:intergenic | 30.0% | |
| !! | AGTGTTTGAAGTCATTTTGA+AGG | + | chr1_4:53412148-53412167 | None:intergenic | 30.0% |
| !! | TCAAAAGTGTTTGATGTCAT+GGG | + | chr1_4:53412181-53412200 | None:intergenic | 30.0% |
| !! | ATCAAAAGTGTTTGATGTCA+TGG | + | chr1_4:53412182-53412201 | None:intergenic | 30.0% |
| GTGTCCAATATTATATTCGT+GGG | + | chr1_4:53412247-53412266 | None:intergenic | 30.0% | |
| AGTGTCCAATATTATATTCG+TGG | + | chr1_4:53412248-53412267 | None:intergenic | 30.0% | |
| AAGAGAGATAGAGAGAAAAT+AGG | - | chr1_4:53412340-53412359 | Msa0169910:intron | 30.0% | |
| GGACAATGTTGAATGAATAT+TGG | - | chr1_4:53412361-53412380 | Msa0169910:intron | 30.0% | |
| TGAATAACGGTATTGTATGA+TGG | - | chr1_4:53412459-53412478 | Msa0169910:intron | 30.0% | |
| ACAAGTTGTCAAACTATTCA+TGG | - | chr1_4:53412546-53412565 | Msa0169910:intron | 30.0% | |
| CAAGTTGTCAAACTATTCAT+GGG | - | chr1_4:53412547-53412566 | Msa0169910:intron | 30.0% | |
| GATTGATATCATCATTGAGT+TGG | - | chr1_4:53412775-53412794 | Msa0169910:intron | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | - | chr1_4:53412858-53412877 | Msa0169910:intron | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | - | chr1_4:53412859-53412878 | Msa0169910:intron | 30.0% |
| TAACCCAATATACATCAACT+GGG | + | chr1_4:53412865-53412884 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | + | chr1_4:53412866-53412885 | None:intergenic | 30.0% | |
| GCCAACTTAGATTATGTAAA+AGG | + | chr1_4:53413001-53413020 | None:intergenic | 30.0% | |
| TCTCTTCCCTGTTAAAAAAA+AGG | + | chr1_4:53413054-53413073 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAACAGGGAAGAG+AGG | - | chr1_4:53413053-53413072 | Msa0169910:intron | 30.0% |
| ACATCATAATCAGCAAATTG+AGG | - | chr1_4:53413107-53413126 | Msa0169910:intron | 30.0% | |
| TCACAAATCACTATACAGAT+TGG | - | chr1_4:53413139-53413158 | Msa0169910:intron | 30.0% | |
| ! | ATATTTTCTTCCCATACTGA+AGG | - | chr1_4:53413202-53413221 | Msa0169910:intron | 30.0% |
| AACACTTCCATAATTTCAGT+CGG | + | chr1_4:53413292-53413311 | None:intergenic | 30.0% | |
| CATTGATGTGTTGAAAAAGA+AGG | - | chr1_4:53413508-53413527 | Msa0169910:intron | 30.0% | |
| TATGATCATATCCAGAAAAC+AGG | - | chr1_4:53413596-53413615 | Msa0169910:intron | 30.0% | |
| !!! | CATTGATTCTTCTTTGGTTT+TGG | + | chr1_4:53413882-53413901 | None:intergenic | 30.0% |
| ! | GACTAATATGCCTTTTTGTT+TGG | + | chr1_4:53414213-53414232 | None:intergenic | 30.0% |
| CTTGTCAACAATAAAGAGAA+TGG | + | chr1_4:53414745-53414764 | None:intergenic | 30.0% | |
| CAACAATTCACCAAGTATTA+TGG | - | chr1_4:53414879-53414898 | Msa0169910:intron | 30.0% | |
| AATAGTGGCATCATTTACTA+TGG | + | chr1_4:53414907-53414926 | None:intergenic | 30.0% | |
| !! | TTCAATTGAGTTGATTTGCT+TGG | - | chr1_4:53414941-53414960 | Msa0169910:intron | 30.0% |
| ! | AAAATGTGGTTAACACCTTT+TGG | - | chr1_4:53414976-53414995 | Msa0169910:intron | 30.0% |
| CTTTCATACAAAAATGAGTC+AGG | - | chr1_4:53415074-53415093 | Msa0169910:intron | 30.0% | |
| GCAGAGTTAAAACTATCAAA+TGG | + | chr1_4:53415637-53415656 | None:intergenic | 30.0% | |
| ! | ATTACTCTTGTGGGTTACTA+TGG | + | chr1_4:53407618-53407637 | None:intergenic | 35.0% |
| GTGCACTATAATTACTCTTG+TGG | + | chr1_4:53407628-53407647 | None:intergenic | 35.0% | |
| GTTCATCAGACATGGTTAAA+GGG | + | chr1_4:53407728-53407747 | None:intergenic | 35.0% | |
| TGTTCATCAGACATGGTTAA+AGG | + | chr1_4:53407729-53407748 | None:intergenic | 35.0% | |
| CAAAATGTGTTCATCAGACA+TGG | + | chr1_4:53407736-53407755 | None:intergenic | 35.0% | |
| ! | CATGTCTGATGAACACATTT+TGG | - | chr1_4:53407734-53407753 | Msa0169910:three_prime_UTR | 35.0% |
| ! | CATCAAACTTAGTGTCACTA+TGG | + | chr1_4:53407782-53407801 | None:intergenic | 35.0% |
| ! | GAATACCTTTTCAACATTGC+TGG | - | chr1_4:53407804-53407823 | Msa0169910:three_prime_UTR | 35.0% |
| TGTTTCCAGCAATGTTGAAA+AGG | + | chr1_4:53407812-53407831 | None:intergenic | 35.0% | |
| GCACAAAGTTATCAACAACA+TGG | + | chr1_4:53407851-53407870 | None:intergenic | 35.0% | |
| ACATGAATATCAAGCAAGTG+TGG | - | chr1_4:53407969-53407988 | Msa0169910:CDS | 35.0% | |
| ! | TTGTGACTGAAGAGAGATTT+TGG | - | chr1_4:53408201-53408220 | Msa0169910:CDS | 35.0% |
| ! | TGTGACTGAAGAGAGATTTT+GGG | - | chr1_4:53408202-53408221 | Msa0169910:CDS | 35.0% |
| AAAGTGTGTAACAAGTAGGA+CGG | - | chr1_4:53408520-53408539 | Msa0169910:intron | 35.0% | |
| !!! | GGTGGTTTTGAGTTCAAATT+TGG | + | chr1_4:53409156-53409175 | None:intergenic | 35.0% |
| GCTAAGAGAAAAAAAGTTGG+TGG | + | chr1_4:53409174-53409193 | None:intergenic | 35.0% | |
| TGGGCTAAGAGAAAAAAAGT+TGG | + | chr1_4:53409177-53409196 | None:intergenic | 35.0% | |
| ACAAACTCATGGGATTATAG+GGG | + | chr1_4:53409220-53409239 | None:intergenic | 35.0% | |
| GTGATCTTACCTGTAATTGT+CGG | - | chr1_4:53409352-53409371 | Msa0169910:CDS | 35.0% | |
| TATGTCTTACACATAGCAGT+AGG | - | chr1_4:53409384-53409403 | Msa0169910:CDS | 35.0% | |
| TTTAGTGAGCATAATTCAGG+TGG | - | chr1_4:53409500-53409519 | Msa0169910:CDS | 35.0% | |
| CAAGAGGATAGGAATGAAAT+TGG | - | chr1_4:53409979-53409998 | Msa0169910:CDS | 35.0% | |
| ! | TGTAAAAAAAAGGCATGAGC+CGG | - | chr1_4:53410122-53410141 | Msa0169910:intron | 35.0% |
| ! | AAGGATGTTTTCGGTATAGT+TGG | + | chr1_4:53411597-53411616 | None:intergenic | 35.0% |
| GTGAGTTGTTCCTAAAGAAA+AGG | + | chr1_4:53411835-53411854 | None:intergenic | 35.0% | |
| !! | AGTCATTTTGAAGGAAAGAG+AGG | + | chr1_4:53412139-53412158 | None:intergenic | 35.0% |
| ! | CTATTTCTTACTCTCTCAAG+AGG | + | chr1_4:53412286-53412305 | None:intergenic | 35.0% |
| TAGAGAGTAATGTGCTAGAT+CGG | - | chr1_4:53412303-53412322 | Msa0169910:intron | 35.0% | |
| ATAACGGTATTGTATGATGG+TGG | - | chr1_4:53412462-53412481 | Msa0169910:intron | 35.0% | |
| !! | TCTGCTTTTGCTCTTGAATA+TGG | - | chr1_4:53412593-53412612 | Msa0169910:intron | 35.0% |
| CTTCATTATGGCCAAAGATT+TGG | + | chr1_4:53412663-53412682 | None:intergenic | 35.0% | |
| !!! | TTTTTTGAGCGATTCAGGTT+TGG | + | chr1_4:53412702-53412721 | None:intergenic | 35.0% |
| ! | AAAACACCGCTATGCAATTT+TGG | - | chr1_4:53412718-53412737 | Msa0169910:intron | 35.0% |
| TAACCTCCAAAATTGCATAG+CGG | + | chr1_4:53412727-53412746 | None:intergenic | 35.0% | |
| GGAGGTTAACAATCTGATTA+AGG | - | chr1_4:53412739-53412758 | Msa0169910:intron | 35.0% | |
| ACAATCTGATTAAGGCAACA+TGG | - | chr1_4:53412747-53412766 | Msa0169910:intron | 35.0% | |
| CTGAGTAACAATTGCAACAA+TGG | + | chr1_4:53412894-53412913 | None:intergenic | 35.0% | |
| AAACTTACGAATCAGTAGTG+AGG | + | chr1_4:53412925-53412944 | None:intergenic | 35.0% | |
| ACACTTCCATAATTTCAGTC+GGG | + | chr1_4:53413291-53413310 | None:intergenic | 35.0% | |
| !!! | TGTTTAAGGTGCTGATTTTC+TGG | - | chr1_4:53413308-53413327 | Msa0169910:intron | 35.0% |
| TTAGTGGAACCACAATAGAT+GGG | + | chr1_4:53413352-53413371 | None:intergenic | 35.0% | |
| TTTAGTGGAACCACAATAGA+TGG | + | chr1_4:53413353-53413372 | None:intergenic | 35.0% | |
| !! | AACACTAACCAGTGTTTTAG+TGG | + | chr1_4:53413368-53413387 | None:intergenic | 35.0% |
| GTTCTTGTTCATTTCAACCT+TGG | - | chr1_4:53413535-53413554 | Msa0169910:intron | 35.0% | |
| TCATAGTTGAGATGTCTTCT+TGG | + | chr1_4:53413568-53413587 | None:intergenic | 35.0% | |
| CATCACTTTGCAACCATAAA+AGG | - | chr1_4:53413722-53413741 | Msa0169910:intron | 35.0% | |
| ! | TATGAACCTGATGCCTTTTA+TGG | + | chr1_4:53413738-53413757 | None:intergenic | 35.0% |
| ATTCATGTTTGGGGAGTAAA+GGG | - | chr1_4:53413845-53413864 | Msa0169910:intron | 35.0% | |
| !!! | CTTCTTTGGTTTTGGTGAAA+GGG | + | chr1_4:53413874-53413893 | None:intergenic | 35.0% |
| !!! | TCTTCTTTGGTTTTGGTGAA+AGG | + | chr1_4:53413875-53413894 | None:intergenic | 35.0% |
| !! | TTGGGTCATTGATTCTTCTT+TGG | + | chr1_4:53413888-53413907 | None:intergenic | 35.0% |
| AATGACCCAAGAACTAATGT+GGG | - | chr1_4:53413898-53413917 | Msa0169910:intron | 35.0% | |
| ! | ATCAACCCACATTAGTTCTT+GGG | + | chr1_4:53413906-53413925 | None:intergenic | 35.0% |
| ! | AATCAACCCACATTAGTTCT+TGG | + | chr1_4:53413907-53413926 | None:intergenic | 35.0% |
| AGATTAAGTGGGTAAGTGTT+TGG | - | chr1_4:53413951-53413970 | Msa0169910:intron | 35.0% | |
| CTAATTTACGTTGAGTTCCA+AGG | + | chr1_4:53414265-53414284 | None:intergenic | 35.0% | |
| GTGCAGTAAATGTAAACAAG+AGG | - | chr1_4:53414331-53414350 | Msa0169910:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | - | chr1_4:53414491-53414510 | Msa0169910:intron | 35.0% |
| CATTTGTGGAGGTAAAGATA+AGG | - | chr1_4:53414848-53414867 | Msa0169910:intron | 35.0% | |
| AGTCTTTGTCTGCTTAATAG+TGG | + | chr1_4:53414922-53414941 | None:intergenic | 35.0% | |
| !! | GGTTAACACCTTTTGGAAAA+AGG | - | chr1_4:53414983-53415002 | Msa0169910:intron | 35.0% |
| ! | ACTCTCTACCTTTTTCCAAA+AGG | + | chr1_4:53414994-53415013 | None:intergenic | 35.0% |
| !! | GTTTGTTTTCTCATGCATCT+TGG | + | chr1_4:53415027-53415046 | None:intergenic | 35.0% |
| ATACAAAAATGAGTCAGGGT+GGG | - | chr1_4:53415079-53415098 | Msa0169910:intron | 35.0% | |
| AGCAATGACAATAGAACCTT+TGG | + | chr1_4:53415114-53415133 | None:intergenic | 35.0% | |
| CATTTGCAGAGTTTGACAAA+TGG | - | chr1_4:53415162-53415181 | Msa0169910:intron | 35.0% | |
| GTTTGACAAATGGAAAGATG+TGG | - | chr1_4:53415172-53415191 | Msa0169910:intron | 35.0% | |
| AAATGAGTATTCAAAGCCCT+TGG | + | chr1_4:53415204-53415223 | None:intergenic | 35.0% | |
| CATCAACATTAGGAATCTCA+AGG | + | chr1_4:53415274-53415293 | None:intergenic | 35.0% | |
| CTTGAGATTCCTAATGTTGA+TGG | - | chr1_4:53415272-53415291 | Msa0169910:CDS | 35.0% | |
| ! | GGGATTTTTCCATCAACATT+AGG | + | chr1_4:53415284-53415303 | None:intergenic | 35.0% |
| TGATAAACACTTCCATTGTG+CGG | + | chr1_4:53415334-53415353 | None:intergenic | 35.0% | |
| GCATTATCGTTGATCATAGT+AGG | - | chr1_4:53415529-53415548 | Msa0169910:CDS | 35.0% | |
| TCACGAATGCAACTAAAAGA+AGG | - | chr1_4:53415553-53415572 | Msa0169910:CDS | 35.0% | |
| TGTGAATAAGTGATCGCACT+AGG | + | chr1_4:53407677-53407696 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | - | chr1_4:53407678-53407697 | Msa0169910:three_prime_UTR | 40.0% | |
| CAGACATGGTTAAAGGGTTA+TGG | + | chr1_4:53407722-53407741 | None:intergenic | 40.0% | |
| AAGTGTGTAACAAGTAGGAC+GGG | - | chr1_4:53408521-53408540 | Msa0169910:intron | 40.0% | |
| TTGTGTAGCTCAATTGGGTT+GGG | + | chr1_4:53409196-53409215 | None:intergenic | 40.0% | |
| CAAACTCATGGGATTATAGG+GGG | + | chr1_4:53409219-53409238 | None:intergenic | 40.0% | |
| GTACATGAACCGACAATTAC+AGG | + | chr1_4:53409364-53409383 | None:intergenic | 40.0% | |
| TGAGCATAATTCAGGTGGTA+GGG | - | chr1_4:53409505-53409524 | Msa0169910:CDS | 40.0% | |
| ! | TAAAGAAAAGGCTCTGGCTA+CGG | + | chr1_4:53411823-53411842 | None:intergenic | 40.0% |
| TGTTCCTAAAGAAAAGGCTC+TGG | + | chr1_4:53411829-53411848 | None:intergenic | 40.0% | |
| ACTCTCTCAAGAGGTAGAAT+GGG | + | chr1_4:53412277-53412296 | None:intergenic | 40.0% | |
| TACTCTCTCAAGAGGTAGAA+TGG | + | chr1_4:53412278-53412297 | None:intergenic | 40.0% | |
| !! | TATTGTATGATGGTGGCAGA+TGG | - | chr1_4:53412469-53412488 | Msa0169910:intron | 40.0% |
| TTGTATGCAATTTCCTCACC+TGG | + | chr1_4:53412506-53412525 | None:intergenic | 40.0% | |
| CTCTTGAATATGGTGAGTTC+TGG | - | chr1_4:53412603-53412622 | Msa0169910:intron | 40.0% | |
| AGAACCACTTGCCAAATCTT+TGG | - | chr1_4:53412649-53412668 | Msa0169910:intron | 40.0% | |
| AGGCAGGACTTATCTCAATT+TGG | - | chr1_4:53413073-53413092 | Msa0169910:intron | 40.0% | |
| TCAAACCCCGACTGAAATTA+TGG | - | chr1_4:53413282-53413301 | Msa0169910:intron | 40.0% | |
| CACTTCCATAATTTCAGTCG+GGG | + | chr1_4:53413290-53413309 | None:intergenic | 40.0% | |
| TTGTGGTTCCACTAAAACAC+TGG | - | chr1_4:53413357-53413376 | Msa0169910:intron | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | - | chr1_4:53413619-53413638 | Msa0169910:intron | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | + | chr1_4:53413647-53413666 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | + | chr1_4:53413648-53413667 | None:intergenic | 40.0% | |
| TGTGGAGGAATGGAATGATA+AGG | - | chr1_4:53413649-53413668 | Msa0169910:intron | 40.0% | |
| GTGGAGGAATGGAATGATAA+GGG | - | chr1_4:53413650-53413669 | Msa0169910:intron | 40.0% | |
| TGGAGGAATGGAATGATAAG+GGG | - | chr1_4:53413651-53413670 | Msa0169910:intron | 40.0% | |
| AAGTGATGCAACACATACCA+TGG | + | chr1_4:53413710-53413729 | None:intergenic | 40.0% | |
| !! | TTGCAACCATAAAAGGCATC+AGG | - | chr1_4:53413729-53413748 | Msa0169910:intron | 40.0% |
| AGGCATCAGGTTCATAAAAG+AGG | - | chr1_4:53413742-53413761 | Msa0169910:intron | 40.0% | |
| GCATTTCAAGCTGAATCCTT+TGG | - | chr1_4:53413769-53413788 | Msa0169910:intron | 40.0% | |
| GTACTCAACACAACAACCAA+AGG | + | chr1_4:53413788-53413807 | None:intergenic | 40.0% | |
| GTTGTTGTGTTGAGTACACA+AGG | - | chr1_4:53413791-53413810 | Msa0169910:intron | 40.0% | |
| GATTCATGTTTGGGGAGTAA+AGG | - | chr1_4:53413844-53413863 | Msa0169910:intron | 40.0% | |
| CAATGACCCAAGAACTAATG+TGG | - | chr1_4:53413897-53413916 | Msa0169910:intron | 40.0% | |
| TATATCAATGCCAACCAGCA+CGG | + | chr1_4:53413930-53413949 | None:intergenic | 40.0% | |
| TAAGTGGGTAAGTGTTTGGT+TGG | - | chr1_4:53413955-53413974 | Msa0169910:intron | 40.0% | |
| ACTACTGTGTTCATATGCAC+TGG | - | chr1_4:53414287-53414306 | Msa0169910:intron | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | - | chr1_4:53414492-53414511 | Msa0169910:intron | 40.0% |
| !! | CCTCCCTCTTCATTTTTCAA+TGG | + | chr1_4:53414815-53414834 | None:intergenic | 40.0% |
| CCATTGAAAAATGAAGAGGG+AGG | - | chr1_4:53414812-53414831 | Msa0169910:intron | 40.0% | |
| GATGACACTGTCATCATTTG+TGG | - | chr1_4:53414834-53414853 | Msa0169910:intron | 40.0% | |
| GTGGAGGTAAAGATAAGGAA+TGG | - | chr1_4:53414853-53414872 | Msa0169910:intron | 40.0% | |
| TACTATGGCGCCATAATACT+TGG | + | chr1_4:53414892-53414911 | None:intergenic | 40.0% | |
| GGAGTCTCAACAACAAAATG+TGG | - | chr1_4:53414962-53414981 | Msa0169910:intron | 40.0% | |
| CATACAAAAATGAGTCAGGG+TGG | - | chr1_4:53415078-53415097 | Msa0169910:intron | 40.0% | |
| GGTTCTATTGTCATTGCTGT+TGG | - | chr1_4:53415116-53415135 | Msa0169910:intron | 40.0% | |
| ! | ATTGTCATTGCTGTTGGTCA+TGG | - | chr1_4:53415122-53415141 | Msa0169910:intron | 40.0% |
| ! | TTGTCATTGCTGTTGGTCAT+GGG | - | chr1_4:53415123-53415142 | Msa0169910:intron | 40.0% |
| CTGGACACTCAATAAAGTCT+GGG | + | chr1_4:53415304-53415323 | None:intergenic | 40.0% | |
| TCTGGACACTCAATAAAGTC+TGG | + | chr1_4:53415305-53415324 | None:intergenic | 40.0% | |
| !! | TGGAAGTGTTTATCAGCTAC+AGG | - | chr1_4:53415339-53415358 | Msa0169910:intron | 40.0% |
| CTGCCATAATGGTTAGCATT+AGG | - | chr1_4:53415364-53415383 | Msa0169910:intron | 40.0% | |
| CTGCCTAATGCTAACCATTA+TGG | + | chr1_4:53415370-53415389 | None:intergenic | 40.0% | |
| TTAGCATTAGGCAGCTTCAT+GGG | - | chr1_4:53415376-53415395 | Msa0169910:intron | 40.0% | |
| ! | GCATTTTCTTCCAAGTTCTG+TGG | - | chr1_4:53415438-53415457 | Msa0169910:CDS | 40.0% |
| AAACAACTGACCACAGAACT+TGG | + | chr1_4:53415451-53415470 | None:intergenic | 40.0% | |
| TCTTGGCTACATCACACAAA+GGG | + | chr1_4:53415504-53415523 | None:intergenic | 40.0% | |
| CAACGATAATGCATGACTCT+TGG | + | chr1_4:53415521-53415540 | None:intergenic | 40.0% | |
| ! | CAACATGGGTTGAACGTGTA+AGG | + | chr1_4:53407836-53407855 | None:intergenic | 45.0% |
| TCAAGCAAGTGTGGAGCAAT+TGG | - | chr1_4:53407978-53407997 | Msa0169910:CDS | 45.0% | |
| GTTGTGTAGCTCAATTGGGT+TGG | + | chr1_4:53409197-53409216 | None:intergenic | 45.0% | |
| GTGAGCATAATTCAGGTGGT+AGG | - | chr1_4:53409504-53409523 | Msa0169910:CDS | 45.0% | |
| ! | GTAGCCAGAGCCTTTTCTTT+AGG | - | chr1_4:53411822-53411841 | Msa0169910:intron | 45.0% |
| TACAGGGTGTGTAGCTCAAA+TGG | + | chr1_4:53411871-53411890 | None:intergenic | 45.0% | |
| TGCTAGATCGGTGATGTGAT+AGG | - | chr1_4:53412315-53412334 | Msa0169910:intron | 45.0% | |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | + | chr1_4:53412647-53412666 | None:intergenic | 45.0% |
| ATGGCCAAAGATTTGGCAAG+TGG | + | chr1_4:53412656-53412675 | None:intergenic | 45.0% | |
| ! | TTGAGGCACTCGCTTCATTA+TGG | + | chr1_4:53412675-53412694 | None:intergenic | 45.0% |
| !! | GATTCAGGTTTGGTGAGTTG+AGG | + | chr1_4:53412692-53412711 | None:intergenic | 45.0% |
| !!! | CGGTGTTTTTTGAGCGATTC+AGG | + | chr1_4:53412707-53412726 | None:intergenic | 45.0% |
| ! | ACACCGCTATGCAATTTTGG+AGG | - | chr1_4:53412721-53412740 | Msa0169910:intron | 45.0% |
| ! | TTTTAACAGGGAAGAGAGGC+AGG | - | chr1_4:53413057-53413076 | Msa0169910:intron | 45.0% |
| CCACAATAGATGGGTGTTTG+TGG | + | chr1_4:53413343-53413362 | None:intergenic | 45.0% | |
| CCACAAACACCCATCTATTG+TGG | - | chr1_4:53413340-53413359 | Msa0169910:intron | 45.0% | |
| !!! | TGTGTTGGCTTCCTGTTTTC+TGG | + | chr1_4:53413610-53413629 | None:intergenic | 45.0% |
| GAAGCCAACACAAGATTGTG+TGG | - | chr1_4:53413618-53413637 | Msa0169910:intron | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | + | chr1_4:53413625-53413644 | None:intergenic | 45.0% | |
| AGGAATGGAATGATAAGGGG+AGG | - | chr1_4:53413654-53413673 | Msa0169910:intron | 45.0% | |
| CCATGGCATCTTAGACTTCA+AGG | + | chr1_4:53413693-53413712 | None:intergenic | 45.0% | |
| ! | CCTTGAAGTCTAAGATGCCA+TGG | - | chr1_4:53413690-53413709 | Msa0169910:intron | 45.0% |
| CGCTGCAACGTAATTCTAAG+AGG | + | chr1_4:53414240-53414259 | None:intergenic | 45.0% | |
| AATTACGTTGCAGCGAACCT+TGG | - | chr1_4:53414245-53414264 | Msa0169910:intron | 45.0% | |
| GACACTGTCATCATTTGTGG+AGG | - | chr1_4:53414837-53414856 | Msa0169910:intron | 45.0% | |
| AAAGATGTGGTGAGCACCAA+GGG | - | chr1_4:53415185-53415204 | Msa0169910:intron | 45.0% | |
| GTTAGCATTAGGCAGCTTCA+TGG | - | chr1_4:53415375-53415394 | Msa0169910:intron | 45.0% | |
| GCTTCATGGGTCTTTAGCAT+TGG | - | chr1_4:53415389-53415408 | Msa0169910:intron | 45.0% | |
| CTTGGCTACATCACACAAAG+GGG | + | chr1_4:53415503-53415522 | None:intergenic | 45.0% | |
| CTCTTGGCTACATCACACAA+AGG | + | chr1_4:53415505-53415524 | None:intergenic | 45.0% | |
| !!! | ATATTTTTAAGTAATATTTT+TGG | - | chr1_4:53408146-53408165 | Msa0169910:CDS | 5.0% |
| !! | AAAAAAAAATTATTACAAAA+TGG | + | chr1_4:53408560-53408579 | None:intergenic | 5.0% |
| !!! | TTATTATAATACTTTTTTTA+AGG | + | chr1_4:53409430-53409449 | None:intergenic | 5.0% |
| !! | TATTATGAATTAATTTAAAA+CGG | + | chr1_4:53410266-53410285 | None:intergenic | 5.0% |
| !!! | TTTCATATTTTTTTTTAAAT+AGG | + | chr1_4:53410536-53410555 | None:intergenic | 5.0% |
| !!! | TTTGAAATATTTTTATAAAA+CGG | - | chr1_4:53411283-53411302 | Msa0169910:intron | 5.0% |
| !!! | ATATTTTTAACTTTATATAA+AGG | - | chr1_4:53412418-53412437 | Msa0169910:intron | 5.0% |
| GGTGAAGTGAAGTTAGCAGG+GGG | + | chr1_4:53408015-53408034 | None:intergenic | 50.0% | |
| CGGTGAAGTGAAGTTAGCAG+GGG | + | chr1_4:53408016-53408035 | None:intergenic | 50.0% | |
| GCGGTGAAGTGAAGTTAGCA+GGG | + | chr1_4:53408017-53408036 | None:intergenic | 50.0% | |
| AGCGGTGAAGTGAAGTTAGC+AGG | + | chr1_4:53408018-53408037 | None:intergenic | 50.0% | |
| GGGGGTTGTGTAGCTCAATT+GGG | + | chr1_4:53409201-53409220 | None:intergenic | 50.0% | |
| AGGGGGTTGTGTAGCTCAAT+TGG | + | chr1_4:53409202-53409221 | None:intergenic | 50.0% | |
| CAAGGCTAGTAGGTCATGCA+CGG | - | chr1_4:53409290-53409309 | Msa0169910:intron | 50.0% | |
| CAACTCACGTCACGACATCA+AGG | - | chr1_4:53412805-53412824 | Msa0169910:intron | 50.0% | |
| ACTGGGAATTGCTCCAAAGC+TGG | + | chr1_4:53412848-53412867 | None:intergenic | 50.0% | |
| GTCTTCTTGGCAGATGTCCA+AGG | + | chr1_4:53413555-53413574 | None:intergenic | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | - | chr1_4:53413631-53413650 | Msa0169910:intron | 50.0% | |
| !! | AATGTGGGTTGATTCCGTGC+TGG | - | chr1_4:53413913-53413932 | Msa0169910:intron | 50.0% |
| AATTTGTCCGGTCCCGACTT+GGG | + | chr1_4:53414507-53414526 | None:intergenic | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | + | chr1_4:53414508-53414527 | None:intergenic | 50.0% | |
| GGGTGGGCAATTGTAACCAA+AGG | - | chr1_4:53415095-53415114 | Msa0169910:intron | 50.0% | |
| GAAAGATGTGGTGAGCACCA+AGG | - | chr1_4:53415184-53415203 | Msa0169910:intron | 50.0% | |
| TCCAGATTGTCACCGCACAA+TGG | - | chr1_4:53415319-53415338 | Msa0169910:intron | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | + | chr1_4:53415323-53415342 | None:intergenic | 50.0% | |
| ! | AGCTACAGGTGCTGCCATAA+TGG | - | chr1_4:53415353-53415372 | Msa0169910:intron | 50.0% |
| !! | CTAGCCTTGCGCACGCTAAA+CGG | + | chr1_4:53409279-53409298 | None:intergenic | 55.0% |
| TTAGCGTGCGCAAGGCTAGT+AGG | - | chr1_4:53409280-53409299 | Msa0169910:intron | 55.0% | |
| ! | GAAAAGGCTCTGGCTACGGT+AGG | + | chr1_4:53411819-53411838 | None:intergenic | 55.0% |
| ATGGTGGCAGATGGCATGCA+AGG | - | chr1_4:53412478-53412497 | Msa0169910:intron | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | + | chr1_4:53412836-53412855 | None:intergenic | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | - | chr1_4:53413634-53413653 | Msa0169910:intron | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | - | chr1_4:53413639-53413658 | Msa0169910:intron | 55.0% | |
| !! | TGGGTTGATTCCGTGCTGGT+TGG | - | chr1_4:53413917-53413936 | Msa0169910:intron | 55.0% |
| CTACGGTAGGCGAGCTGCAT+GGG | + | chr1_4:53411806-53411825 | None:intergenic | 60.0% | |
| CAGATGGCATGCAAGGCTCC+AGG | - | chr1_4:53412485-53412504 | Msa0169910:intron | 60.0% | |
| GCCAGCTCTTGCACCAGCTT+TGG | - | chr1_4:53412832-53412851 | Msa0169910:intron | 60.0% | |
| ACATTGGCCCAAGTCGGGAC+CGG | - | chr1_4:53414497-53414516 | Msa0169910:intron | 60.0% | |
| GCTACGGTAGGCGAGCTGCA+TGG | + | chr1_4:53411807-53411826 | None:intergenic | 65.0% | |
| GGCATGCAAGGCTCCAGGTG+AGG | - | chr1_4:53412490-53412509 | Msa0169910:intron | 65.0% | |
| GGCGCCGTTTAGCGTGCGCA+AGG | - | chr1_4:53409272-53409291 | Msa0169910:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53407576 | 53415707 | 53407576 | ID=Msa0169910;Name=Msa0169910 |
| chr1_4 | mRNA | 53407576 | 53415707 | 53407576 | ID=Msa0169910-mRNA-1;Parent=Msa0169910;Name=Msa0169910-mRNA-1;_AED=0.07;_eAED=0.07;_QI=90|1|1|1|1|1|7|328|664 |
| chr1_4 | exon | 53407576 | 53408455 | 53407576 | ID=Msa0169910-mRNA-1:exon:15898;Parent=Msa0169910-mRNA-1 |
| chr1_4 | exon | 53409322 | 53409780 | 53409322 | ID=Msa0169910-mRNA-1:exon:15897;Parent=Msa0169910-mRNA-1 |
| chr1_4 | exon | 53409905 | 53410038 | 53409905 | ID=Msa0169910-mRNA-1:exon:15896;Parent=Msa0169910-mRNA-1 |
| chr1_4 | exon | 53410123 | 53410217 | 53410123 | ID=Msa0169910-mRNA-1:exon:15895;Parent=Msa0169910-mRNA-1 |
| chr1_4 | exon | 53410347 | 53410795 | 53410347 | ID=Msa0169910-mRNA-1:exon:15894;Parent=Msa0169910-mRNA-1 |
| chr1_4 | exon | 53415218 | 53415316 | 53415218 | ID=Msa0169910-mRNA-1:exon:15893;Parent=Msa0169910-mRNA-1 |
| chr1_4 | exon | 53415411 | 53415707 | 53415411 | ID=Msa0169910-mRNA-1:exon:15892;Parent=Msa0169910-mRNA-1 |
| chr1_4 | five_prime_UTR | 53415618 | 53415707 | 53415618 | ID=Msa0169910-mRNA-1:five_prime_utr;Parent=Msa0169910-mRNA-1 |
| chr1_4 | CDS | 53415411 | 53415617 | 53415411 | ID=Msa0169910-mRNA-1:cds;Parent=Msa0169910-mRNA-1 |
| chr1_4 | CDS | 53415218 | 53415316 | 53415218 | ID=Msa0169910-mRNA-1:cds;Parent=Msa0169910-mRNA-1 |
| chr1_4 | CDS | 53410347 | 53410795 | 53410347 | ID=Msa0169910-mRNA-1:cds;Parent=Msa0169910-mRNA-1 |
| chr1_4 | CDS | 53410123 | 53410217 | 53410123 | ID=Msa0169910-mRNA-1:cds;Parent=Msa0169910-mRNA-1 |
| chr1_4 | CDS | 53409905 | 53410038 | 53409905 | ID=Msa0169910-mRNA-1:cds;Parent=Msa0169910-mRNA-1 |
| chr1_4 | CDS | 53409322 | 53409780 | 53409322 | ID=Msa0169910-mRNA-1:cds;Parent=Msa0169910-mRNA-1 |
| chr1_4 | CDS | 53407904 | 53408455 | 53407904 | ID=Msa0169910-mRNA-1:cds;Parent=Msa0169910-mRNA-1 |
| chr1_4 | three_prime_UTR | 53407576 | 53407903 | 53407576 | ID=Msa0169910-mRNA-1:three_prime_utr;Parent=Msa0169910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
