Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077110 | XP_013468706.1 | 96.084 | 664 | 26 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077110 | sp|Q9SS87|SEOB_ARATH | 29.060 | 702 | 425 | 23 | 25 | 663 | 38 | 729 | 5.87e-87 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077110 | A0A072VMS7 | 96.084 | 664 | 26 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029920 | Msa0077110 | 0.966366 | 7.965699e-126 | -8.615850e-47 |
| Msa0077110 | Msa0125170 | 0.917087 | 8.137009e-86 | -8.615850e-47 |
| Msa0077110 | Msa0169910 | 0.933209 | 2.659863e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077110 | MtrunA17_Chr1g0186861 | 94.729 | 664 | 35 | 0 | 1 | 664 | 1 | 664 | 0.0 | 1303 |
| Msa0077110 | MtrunA17_Chr1g0186851 | 86.145 | 664 | 90 | 1 | 1 | 664 | 1 | 662 | 0.0 | 1186 |
| Msa0077110 | MtrunA17_Chr1g0186911 | 96.619 | 562 | 19 | 0 | 103 | 664 | 1 | 562 | 0.0 | 1126 |
| Msa0077110 | MtrunA17_Chr1g0187041 | 73.684 | 665 | 171 | 2 | 1 | 663 | 1 | 663 | 0.0 | 981 |
| Msa0077110 | MtrunA17_Chr1g0186841 | 58.459 | 662 | 265 | 7 | 5 | 663 | 9 | 663 | 0.0 | 781 |
| Msa0077110 | MtrunA17_Chr1g0165791 | 35.347 | 662 | 402 | 11 | 20 | 663 | 25 | 678 | 1.51e-139 | 424 |
| Msa0077110 | MtrunA17_Chr7g0226571 | 32.184 | 696 | 407 | 19 | 24 | 663 | 25 | 711 | 4.84e-104 | 332 |
| Msa0077110 | MtrunA17_Chr1g0187001 | 31.784 | 667 | 389 | 16 | 20 | 662 | 11 | 635 | 1.14e-100 | 321 |
| Msa0077110 | MtrunA17_Chr3g0116601 | 30.825 | 691 | 413 | 19 | 23 | 661 | 27 | 704 | 1.22e-96 | 312 |
| Msa0077110 | MtrunA17_Chr8g0381301 | 31.223 | 695 | 416 | 24 | 22 | 662 | 17 | 703 | 1.04e-94 | 307 |
| Msa0077110 | MtrunA17_Chr1g0186991 | 30.299 | 670 | 406 | 18 | 20 | 662 | 31 | 666 | 8.88e-94 | 304 |
| Msa0077110 | MtrunA17_Chr1g0186981 | 29.685 | 667 | 407 | 14 | 20 | 662 | 34 | 662 | 3.38e-88 | 289 |
| Msa0077110 | MtrunA17_Chr1g0186901 | 92.233 | 103 | 8 | 0 | 1 | 103 | 1 | 103 | 2.64e-60 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077110 | AT3G01680.1 | 29.060 | 702 | 425 | 23 | 25 | 663 | 38 | 729 | 5.97e-88 | 290 |
| Msa0077110 | AT3G01670.2 | 26.723 | 595 | 376 | 13 | 116 | 661 | 261 | 844 | 4.33e-56 | 205 |
| Msa0077110 | AT3G01670.1 | 26.723 | 595 | 376 | 13 | 116 | 661 | 237 | 820 | 7.87e-56 | 204 |
| Msa0077110 | AT1G67790.1 | 23.770 | 610 | 393 | 19 | 98 | 659 | 79 | 664 | 2.04e-39 | 154 |
Find 147 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATTATGGAAGTGTTTA+AGG | 0.151408 | 1_2:-53554693 | Msa0077110:CDS |
| CATTGATTCTTCTTTGGTTT+TGG | 0.159114 | 1_2:+53554108 | None:intergenic |
| AAAACACCGCTATGCAATTT+TGG | 0.175126 | 1_2:-53555269 | Msa0077110:CDS |
| TCAAACCCCGACTGAAATTA+TGG | 0.226152 | 1_2:-53554705 | Msa0077110:CDS |
| AAAATGTGGTTAACACCTTT+TGG | 0.226558 | 1_2:-53553512 | Msa0077110:CDS |
| TTGGGTCATTGATTCTTCTT+TGG | 0.230123 | 1_2:+53554102 | None:intergenic |
| CAACAATTCACCAAGTATTA+TGG | 0.234260 | 1_2:-53553609 | Msa0077110:CDS |
| CATCACTTTGCAACCATAAA+AGG | 0.238124 | 1_2:-53554265 | Msa0077110:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.255879 | 1_2:-53555129 | Msa0077110:CDS |
| GGAGGTTAACAATCTGATTA+AGG | 0.259837 | 1_2:-53555248 | Msa0077110:CDS |
| TGTTCATCAGACATGGTTAA+AGG | 0.274935 | 1_2:+53557667 | None:intergenic |
| ATTACTCTTGTGGGTTACTA+TGG | 0.276653 | 1_2:+53557778 | None:intergenic |
| CTTGAGATTCCTAATGTTGA+TGG | 0.279806 | 1_2:-53553216 | Msa0077110:CDS |
| ATTTCATATGATTCATGTTT+GGG | 0.287513 | 1_2:-53554152 | Msa0077110:CDS |
| CTGCCTAATGCTAACCATTA+TGG | 0.297378 | 1_2:+53553121 | None:intergenic |
| CTTCATTATGGCCAATGATT+TGG | 0.299452 | 1_2:+53555327 | None:intergenic |
| CATGTCTGATGAACACATTT+TGG | 0.307791 | 1_2:-53557659 | Msa0077110:CDS |
| CTCTTGAATATGGTGAGTTC+TGG | 0.316509 | 1_2:-53555384 | Msa0077110:CDS |
| AGGCAGGACTTATCTCAATT+TGG | 0.322196 | 1_2:-53554914 | Msa0077110:CDS |
| GCCAGCTCTTGCACCAGCTT+TGG | 0.325831 | 1_2:-53555155 | Msa0077110:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.325968 | 1_2:-53555128 | Msa0077110:CDS |
| TTGAGGCACTCGCTTCATTA+TGG | 0.326662 | 1_2:+53555315 | None:intergenic |
| GTGGGTTACTATGGTTTAGA+AGG | 0.343543 | 1_2:+53557787 | None:intergenic |
| CATTTCATATGATTCATGTT+TGG | 0.344991 | 1_2:-53554153 | Msa0077110:CDS |
| AATCAACCCACATTAGTTCT+TGG | 0.350415 | 1_2:+53554083 | None:intergenic |
| ATTCATGTTTGGGGAGTAAA+GGG | 0.351683 | 1_2:-53554142 | Msa0077110:CDS |
| AATAGTGGCATCATTTACTA+TGG | 0.358093 | 1_2:+53553584 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359855 | 1_2:+53555124 | None:intergenic |
| TTTAGTGGAACCACAATAGA+TGG | 0.364875 | 1_2:+53554637 | None:intergenic |
| ACAAGCTGTCAAACTATTCA+TGG | 0.373229 | 1_2:-53555441 | Msa0077110:CDS |
| TCATAGTTGAGATGTCTTCT+TGG | 0.373232 | 1_2:+53554422 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1_2:+53553168 | None:intergenic |
| TACTATGGCGCCATAATACT+TGG | 0.395719 | 1_2:+53553599 | None:intergenic |
| GCATTTCAAGCTGAATCCTT+TGG | 0.400511 | 1_2:-53554218 | Msa0077110:CDS |
| TTCAATTGAGTTGATTTGCT+TGG | 0.402147 | 1_2:-53553547 | Msa0077110:CDS |
| TCAAGCAAGTGTGGAGCAAT+TGG | 0.404063 | 1_2:-53557415 | Msa0077110:CDS |
| TCTGGACACTCAATAAAGTC+TGG | 0.413591 | 1_2:+53553186 | None:intergenic |
| CAGACATGGTTAAAGGGTTA+TGG | 0.416704 | 1_2:+53557674 | None:intergenic |
| GTGGAGGAATGGAATGATAA+GGG | 0.417645 | 1_2:-53554337 | Msa0077110:CDS |
| AGCTACAGGTGCTGCCATAA+TGG | 0.418677 | 1_2:-53553135 | Msa0077110:CDS |
| CATCAAACTTAGTGTCACTA+TGG | 0.419012 | 1_2:+53557614 | None:intergenic |
| AGCAATCACAATAGAACCTT+TGG | 0.422723 | 1_2:+53553377 | None:intergenic |
| TATGATCATATCCAGAAAAC+AGG | 0.424006 | 1_2:-53554391 | Msa0077110:CDS |
| CTGCCATAATGGTTAGCATT+AGG | 0.426200 | 1_2:-53553124 | Msa0077110:exon |
| TGCACTAGAATTACTCTTGT+GGG | 0.428005 | 1_2:+53557769 | None:intergenic |
| CCATGGCATCTTAGACTTCA+AGG | 0.428095 | 1_2:+53554297 | None:intergenic |
| CCACAATAGATGGGTGTTTG+TGG | 0.437219 | 1_2:+53554647 | None:intergenic |
| ATCAACCCACATTAGTTCTT+GGG | 0.438934 | 1_2:+53554084 | None:intergenic |
| GATTCATGTTTGGGGAGTAA+AGG | 0.439109 | 1_2:-53554143 | Msa0077110:CDS |
| TTGTATGCAATTTCCTCACC+TGG | 0.440380 | 1_2:+53555484 | None:intergenic |
| AGTCTTTGTCTGCTTAATAG+TGG | 0.440642 | 1_2:+53553569 | None:intergenic |
| GTTAGCATTAGGCAGCTTCA+TGG | 0.445244 | 1_2:-53553113 | Msa0077110:exon |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_2:+53554343 | None:intergenic |
| GTTCATCAGACATGGTTAAA+GGG | 0.454129 | 1_2:+53557668 | None:intergenic |
| GCATTATCGTTGATCATAGT+AGG | 0.454901 | 1_2:-53552959 | Msa0077110:three_prime_UTR |
| CACAGTTTACATTATTCAGT+TGG | 0.458366 | 1_2:+53552799 | None:intergenic |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_2:+53557560 | None:intergenic |
| ACACTTCCATAATTTCAGTC+GGG | 0.466104 | 1_2:+53554699 | None:intergenic |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.469770 | 1_2:+53555154 | None:intergenic |
| ATTGTGATTGCTGTTGGTCA+TGG | 0.472155 | 1_2:-53553366 | Msa0077110:CDS |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1_2:-53555430 | Msa0077110:CDS |
| GTTCTTGTTCATTTCAACCT+TGG | 0.474812 | 1_2:-53554452 | Msa0077110:CDS |
| TTGCAACCATAAAAGGCATC+AGG | 0.479822 | 1_2:-53554258 | Msa0077110:CDS |
| TTGTGATTGCTGTTGGTCAT+GGG | 0.479882 | 1_2:-53553365 | Msa0077110:CDS |
| AGAACCACTTGCCAAATCAT+TGG | 0.480223 | 1_2:-53555338 | Msa0077110:CDS |
| TGTGGAGGAATGGAATGATA+AGG | 0.480677 | 1_2:-53554338 | Msa0077110:CDS |
| AGCGGTGAAGTGAAGTTAGC+AGG | 0.483068 | 1_2:+53557378 | None:intergenic |
| CATTTGCAGAGTTTGACAAA+TGG | 0.486055 | 1_2:-53553326 | Msa0077110:CDS |
| GATGACACTGTCATCATTTG+TGG | 0.486509 | 1_2:-53553654 | Msa0077110:CDS |
| TGTTTCCAGCAATGTTGAAA+AGG | 0.490292 | 1_2:+53557584 | None:intergenic |
| GCATTGATATAAAGATTAAG+TGG | 0.490685 | 1_2:-53554048 | Msa0077110:CDS |
| GATTGATATCATCATTGAGT+TGG | 0.493959 | 1_2:-53555212 | Msa0077110:CDS |
| CAGATGGCATGCAAGGCTCC+AGG | 0.494131 | 1_2:-53555502 | Msa0077110:CDS |
| CAACGATAATGCATGACTCT+TGG | 0.494272 | 1_2:+53552970 | None:intergenic |
| GCAGAGTTAAAACTATCAAA+TGG | 0.503065 | 1_2:+53552854 | None:intergenic |
| ACTGGGAATTGCTCCAAAGC+TGG | 0.505702 | 1_2:+53555142 | None:intergenic |
| AACACTTCCATAATTTCAGT+CGG | 0.506807 | 1_2:+53554698 | None:intergenic |
| TGGAAGTGTTTATCAGCTAC+AGG | 0.511091 | 1_2:-53553149 | Msa0077110:CDS |
| CTGAGTAACAATTGCAACAA+TGG | 0.516089 | 1_2:+53555096 | None:intergenic |
| TCTTGGCTACATCACACAAA+GGG | 0.516576 | 1_2:+53552987 | None:intergenic |
| TTGTGGTTCCACTAAAACAC+TGG | 0.527106 | 1_2:-53554630 | Msa0077110:intron |
| GGTTCTATTGTGATTGCTGT+TGG | 0.527999 | 1_2:-53553372 | Msa0077110:CDS |
| CAATGACCCAAGAACTAATG+TGG | 0.529258 | 1_2:-53554090 | Msa0077110:CDS |
| AGGCATCAGGTTCATAAAAG+AGG | 0.531058 | 1_2:-53554245 | Msa0077110:CDS |
| TCACAAATCACTATACAGAT+TGG | 0.534352 | 1_2:-53554848 | Msa0077110:intron |
| ATCATTCCATTCCTCCACAA+TGG | 0.536453 | 1_2:+53554342 | None:intergenic |
| GTGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_2:-53553635 | Msa0077110:CDS |
| CTGGACACTCAATAAAGTCT+GGG | 0.551291 | 1_2:+53553187 | None:intergenic |
| AAAGATGTGGTGAGCAGCAA+GGG | 0.553956 | 1_2:-53553303 | Msa0077110:CDS |
| CAAAATGTGTTCATCAGACA+TGG | 0.554726 | 1_2:+53557660 | None:intergenic |
| GCGGTGAAGTGAAGTTAGCA+GGG | 0.555690 | 1_2:+53557379 | None:intergenic |
| ATGGCCAATGATTTGGCAAG+TGG | 0.556193 | 1_2:+53555334 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1_2:-53554880 | Msa0077110:CDS |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_2:-53554348 | Msa0077110:CDS |
| TTAGCATTAGGCAGCTTCAT+GGG | 0.566452 | 1_2:-53553112 | Msa0077110:exon |
| CAACTCACGTCACGACATCA+AGG | 0.567567 | 1_2:-53555182 | Msa0077110:CDS |
| CATTGATATAAAGATTAAGT+GGG | 0.567772 | 1_2:-53554047 | Msa0077110:intron |
| TTTGAAGAAAATCAATTCTG+AGG | 0.569533 | 1_2:-53557349 | Msa0077110:intron |
| GTGCACTAGAATTACTCTTG+TGG | 0.570358 | 1_2:+53557768 | None:intergenic |
| GTCTTCTTGGCAGATGTCCA+AGG | 0.571060 | 1_2:+53554435 | None:intergenic |
| CATCAACATTAGGAATCTCA+AGG | 0.576608 | 1_2:+53553217 | None:intergenic |
| CACTTCCATAATTTCAGTCG+GGG | 0.578548 | 1_2:+53554700 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1_2:+53557719 | None:intergenic |
| GATTCAGGTTTAGTGAGTTG+AGG | 0.580085 | 1_2:+53555298 | None:intergenic |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_2:+53554365 | None:intergenic |
| CATTTGTGGAGGTAAAGATA+AGG | 0.582924 | 1_2:-53553640 | Msa0077110:CDS |
| CCTTGAAGTCTAAGATGCCA+TGG | 0.584604 | 1_2:-53554297 | Msa0077110:CDS |
| CAAGCTGTCAAACTATTCAT+GGG | 0.585743 | 1_2:-53555440 | Msa0077110:CDS |
| TCACGAATGCAACTAAAAGA+AGG | 0.586356 | 1_2:-53552935 | Msa0077110:three_prime_UTR |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_2:-53554356 | Msa0077110:CDS |
| CACAAAGTTATCAACAACAT+GGG | 0.594338 | 1_2:+53557546 | None:intergenic |
| CCACAAACACCCATCTATTG+TGG | 0.594377 | 1_2:-53554647 | Msa0077110:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.596089 | 1_2:-53554369 | Msa0077110:CDS |
| GAAAGATGTGGTGAGCAGCA+AGG | 0.596633 | 1_2:-53553304 | Msa0077110:CDS |
| AATGTGGGTTGATTCCGTGC+TGG | 0.599556 | 1_2:-53554074 | Msa0077110:CDS |
| GCACAAAGTTATCAACAACA+TGG | 0.600378 | 1_2:+53557545 | None:intergenic |
| TTAGTGGAACCACAATAGAT+GGG | 0.601002 | 1_2:+53554638 | None:intergenic |
| TGGGTTGATTCCGTGCTGGT+TGG | 0.605127 | 1_2:-53554070 | Msa0077110:CDS |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1_2:-53557715 | Msa0077110:CDS |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.610349 | 1_2:+53555343 | None:intergenic |
| CTCTTGGCTACATCACACAA+AGG | 0.612383 | 1_2:+53552986 | None:intergenic |
| GGAGTCTCAACAACAAAATG+TGG | 0.614411 | 1_2:-53553526 | Msa0077110:CDS |
| TATATCAATGCCAACCAGCA+CGG | 0.619216 | 1_2:+53554060 | None:intergenic |
| GGGTGGGCAATTGTAACCAA+AGG | 0.622664 | 1_2:-53553393 | Msa0077110:CDS |
| TTTCATATGATTCATGTTTG+GGG | 0.624357 | 1_2:-53554151 | Msa0077110:CDS |
| AATGACCCAAGAACTAATGT+GGG | 0.624567 | 1_2:-53554089 | Msa0077110:CDS |
| ACATGAATATCAAGCAAGTG+TGG | 0.629780 | 1_2:-53557424 | Msa0077110:CDS |
| GGCATGCAAGGCTCCAGGTG+AGG | 0.630978 | 1_2:-53555497 | Msa0077110:CDS |
| AGGAATGGAATGATAAGGGG+AGG | 0.635212 | 1_2:-53554333 | Msa0077110:CDS |
| ATGGTGGCAGATGGCATGCA+AGG | 0.637627 | 1_2:-53555509 | Msa0077110:intron |
| TGGAGGAATGGAATGATAAG+GGG | 0.637916 | 1_2:-53554336 | Msa0077110:CDS |
| ACAATCTGATTAAGGCAACA+TGG | 0.639246 | 1_2:-53555240 | Msa0077110:CDS |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1_2:-53553169 | Msa0077110:CDS |
| GACACTGTCATCATTTGTGG+AGG | 0.653594 | 1_2:-53553651 | Msa0077110:CDS |
| AAGTGATGCAACACATACCA+TGG | 0.654990 | 1_2:+53554280 | None:intergenic |
| CGGTGAAGTGAAGTTAGCAG+GGG | 0.658379 | 1_2:+53557380 | None:intergenic |
| GTTGTTGTGTTGAGTACACA+AGG | 0.659541 | 1_2:-53554196 | Msa0077110:CDS |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1_2:+53555125 | None:intergenic |
| GTACTCAACACAACAACCAA+AGG | 0.668954 | 1_2:+53554202 | None:intergenic |
| CTTGGCTACATCACACAAAG+GGG | 0.672326 | 1_2:+53552988 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.674200 | 1_2:-53554368 | Msa0077110:CDS |
| TGATAAACACTTCCATTGTG+CGG | 0.679237 | 1_2:+53553157 | None:intergenic |
| AAACTTACGAATCAGTAGTG+AGG | 0.684196 | 1_2:+53555065 | None:intergenic |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_2:-53554353 | Msa0077110:CDS |
| GTTTGACAAATGGAAAGATG+TGG | 0.704359 | 1_2:-53553316 | Msa0077110:CDS |
| GGTGAAGTGAAGTTAGCAGG+GGG | 0.723578 | 1_2:+53557381 | None:intergenic |
| TAACCTCCAAAATTGCATAG+CGG | 0.752415 | 1_2:+53555263 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACTATTACAAAA+TGG | + | chr1_2:53553770-53553789 | None:intergenic | 10.0% |
| !!! | CAAATTTTTTATTTTTCTTT+TGG | - | chr1_2:53554197-53554216 | Msa0077110:CDS | 10.0% |
| !!! | TTACTAAAGATTTTTTTTTA+GGG | + | chr1_2:53554578-53554597 | None:intergenic | 10.0% |
| !! | ATAAAGTTAAAAATATTACA+GGG | + | chr1_2:53555047-53555066 | None:intergenic | 10.0% |
| !! | TATAAAGTTAAAAATATTAC+AGG | + | chr1_2:53555048-53555067 | None:intergenic | 10.0% |
| !! | TACTAAAGAAAAAAAGTTAT+GGG | + | chr1_2:53554554-53554573 | None:intergenic | 15.0% |
| !! | ATACTAAAGAAAAAAAGTTA+TGG | + | chr1_2:53554555-53554574 | None:intergenic | 15.0% |
| !!! | GTTACTAAAGATTTTTTTTT+AGG | + | chr1_2:53554579-53554598 | None:intergenic | 15.0% |
| !! | TTCCATAAAAATCATATAAA+TGG | - | chr1_2:53554621-53554640 | Msa0077110:intron | 15.0% |
| !!! | TTTTTTTAGAGGAATATAAA+TGG | - | chr1_2:53554649-53554668 | Msa0077110:CDS | 15.0% |
| !!! | TTTTAATTATGTGCTTATTT+GGG | + | chr1_2:53554842-53554861 | None:intergenic | 15.0% |
| !!! | TTTTTAATTATGTGCTTATT+TGG | + | chr1_2:53554843-53554862 | None:intergenic | 15.0% |
| !! | AATGAATATTGGAAAATTAA+AGG | - | chr1_2:53555005-53555024 | Msa0077110:intron | 15.0% |
| !!! | TTTAACTTTATATAAAGGTT+TGG | - | chr1_2:53555056-53555075 | Msa0077110:intron | 15.0% |
| !!! | TGAATGTTTTATATTTAAAC+AGG | - | chr1_2:53556114-53556133 | Msa0077110:intron | 15.0% |
| !! | TTTATACTATTATTAGTACA+TGG | + | chr1_2:53556687-53556706 | None:intergenic | 15.0% |
| !! | AATATAGGTAAATATTACTT+TGG | + | chr1_2:53556777-53556796 | None:intergenic | 15.0% |
| !!! | TTAACTTGTTTGTTTATTAC+AGG | - | chr1_2:53553172-53553191 | Msa0077110:CDS | 20.0% |
| !!! | TAACTTGTTTGTTTATTACA+GGG | - | chr1_2:53553173-53553192 | Msa0077110:CDS | 20.0% |
| !!! | AAAATGTGTGTTTTATTTAG+AGG | - | chr1_2:53553514-53553533 | Msa0077110:CDS | 20.0% |
| !!! | TCTTTTAAATTGTGATAAAC+AGG | + | chr1_2:53553843-53553862 | None:intergenic | 20.0% |
| !!! | AGAAAAACATTTTCTATAAC+TGG | - | chr1_2:53553932-53553951 | Msa0077110:intron | 20.0% |
| !!! | AAAAGAGCTTATATTCTTTT+TGG | + | chr1_2:53554103-53554122 | None:intergenic | 20.0% |
| !! | CTAAAGAAAAAAAGTTAATG+AGG | + | chr1_2:53554459-53554478 | None:intergenic | 20.0% |
| !!! | CTCATTAACTTTTTTTCTTT+AGG | - | chr1_2:53554457-53554476 | Msa0077110:CDS | 20.0% |
| !!! | GACCATTTATATGATTTTTA+TGG | + | chr1_2:53554626-53554645 | None:intergenic | 20.0% |
| !! | AGCTATTTATGTAATAACTT+AGG | - | chr1_2:53554682-53554701 | Msa0077110:CDS | 20.0% |
| !!! | TTACTAACCTTTTTTTTAAC+AGG | - | chr1_2:53555677-53555696 | Msa0077110:intron | 20.0% |
| !!! | TACTAACCTTTTTTTTAACA+GGG | - | chr1_2:53555678-53555697 | Msa0077110:intron | 20.0% |
| !! | AAAATAATTTCCTTCAGTAT+GGG | + | chr1_2:53555848-53555867 | None:intergenic | 20.0% |
| !! | TAAAATAATTTCCTTCAGTA+TGG | + | chr1_2:53555849-53555868 | None:intergenic | 20.0% |
| !! | ATTTCATATGATTCATGTTT+GGG | - | chr1_2:53556468-53556487 | Msa0077110:intron | 20.0% |
| !! | CATTGATATAAAGATTAAGT+GGG | - | chr1_2:53556573-53556592 | Msa0077110:intron | 20.0% |
| !! | GTAAATATTACTTTGGATTT+AGG | + | chr1_2:53556770-53556789 | None:intergenic | 20.0% |
| !! | ATAATTATGTCTCACAATAT+AGG | + | chr1_2:53556792-53556811 | None:intergenic | 20.0% |
| !!! | CTTTTTTCTCTGAATCAATA+TGG | - | chr1_2:53552874-53552893 | Msa0077110:three_prime_UTR | 25.0% |
| ! | TAAAAAAAGAACGTAGAGAT+AGG | + | chr1_2:53553120-53553139 | None:intergenic | 25.0% |
| ! | TTTGAAGAAAATCAATTCTG+AGG | - | chr1_2:53553271-53553290 | Msa0077110:CDS | 25.0% |
| ! | TTTACATGTAGTTTAGCATA+TGG | + | chr1_2:53553319-53553338 | None:intergenic | 25.0% |
| !!! | TATTTTTGGTACAAATCATG+TGG | - | chr1_2:53553387-53553406 | Msa0077110:CDS | 25.0% |
| !!! | AGAGAGATCAGTTTTTTATT+AGG | + | chr1_2:53554037-53554056 | None:intergenic | 25.0% |
| !! | CTTTTTGGATAGATTAATCT+TGG | + | chr1_2:53554088-53554107 | None:intergenic | 25.0% |
| !!! | AGACACTCATGATTTTTTTT+TGG | + | chr1_2:53554284-53554303 | None:intergenic | 25.0% |
| ! | TAACAAACTCATGATTTACA+GGG | + | chr1_2:53554522-53554541 | None:intergenic | 25.0% |
| !!! | AAATGGTCGATTTTTTTTAG+AGG | - | chr1_2:53554638-53554657 | Msa0077110:CDS | 25.0% |
| ! | TTGTTGTATACTTTATATGC+AGG | + | chr1_2:53554727-53554746 | None:intergenic | 25.0% |
| ! | TAATCCCACGAATATAATAT+TGG | - | chr1_2:53554873-53554892 | Msa0077110:CDS | 25.0% |
| ! | TGACAATGTTGAATGAATAT+TGG | - | chr1_2:53554994-53555013 | Msa0077110:intron | 25.0% |
| ! | TGCACATTGTATATGAATAA+CGG | - | chr1_2:53555079-53555098 | Msa0077110:CDS | 25.0% |
| !! | ACCTTTTACATAATCTAAGT+TGG | - | chr1_2:53555630-53555649 | Msa0077110:intron | 25.0% |
| !!! | TGAAATTATGGAAGTGTTTA+AGG | - | chr1_2:53555927-53555946 | Msa0077110:intron | 25.0% |
| !!! | CTTCACTTTTTAATCTAGTT+TGG | - | chr1_2:53556089-53556108 | Msa0077110:intron | 25.0% |
| ! | CATTTCATATGATTCATGTT+TGG | - | chr1_2:53556467-53556486 | Msa0077110:intron | 25.0% |
| ! | TTTCATATGATTCATGTTTG+GGG | - | chr1_2:53556469-53556488 | Msa0077110:intron | 25.0% |
| !! | GCATTGATATAAAGATTAAG+TGG | - | chr1_2:53556572-53556591 | Msa0077110:intron | 25.0% |
| ! | TCTGATAATATTACATCATG+TGG | - | chr1_2:53556735-53556754 | Msa0077110:intron | 25.0% |
| !! | ATTTCCTTTGAAAAATGAAG+AGG | - | chr1_2:53556940-53556959 | Msa0077110:intron | 25.0% |
| !! | TTTCCTTTGAAAAATGAAGA+GGG | - | chr1_2:53556941-53556960 | Msa0077110:intron | 25.0% |
| ! | TTTCATACAAAAATGAGTCA+GGG | - | chr1_2:53557207-53557226 | Msa0077110:intron | 25.0% |
| ! | AAGATTTTGTGTGTTTTGTC+TGG | + | chr1_2:53552812-53552831 | None:intergenic | 30.0% |
| CACAAAGTTATCAACAACAT+GGG | + | chr1_2:53553077-53553096 | None:intergenic | 30.0% | |
| ! | ATTTTCTTCAAAGTACACAG+CGG | + | chr1_2:53553263-53553282 | None:intergenic | 30.0% |
| ! | AAAGAAAGTGTGTAACAAGT+AGG | - | chr1_2:53553726-53553745 | Msa0077110:intron | 30.0% |
| TGAGCTAAGAGAAAAAAAGT+TGG | + | chr1_2:53554383-53554402 | None:intergenic | 30.0% | |
| AACAAACTCATGGGATTATA+GGG | + | chr1_2:53554427-53554446 | None:intergenic | 30.0% | |
| TAACAAACTCATGGGATTAT+AGG | + | chr1_2:53554428-53554447 | None:intergenic | 30.0% | |
| CAATGTTGTAACAAACTCAT+GGG | + | chr1_2:53554436-53554455 | None:intergenic | 30.0% | |
| GTAACAAACTCATGATTTAC+AGG | + | chr1_2:53554523-53554542 | None:intergenic | 30.0% | |
| !! | AGTGTTTGAAGTCATTTTGA+AGG | + | chr1_2:53554781-53554800 | None:intergenic | 30.0% |
| !! | TCAAAAGTGTTTGATGTCAT+GGG | + | chr1_2:53554814-53554833 | None:intergenic | 30.0% |
| !! | ATCAAAAGTGTTTGATGTCA+TGG | + | chr1_2:53554815-53554834 | None:intergenic | 30.0% |
| AATTATGTGCTTATTTGGGA+AGG | + | chr1_2:53554838-53554857 | None:intergenic | 30.0% | |
| GTGTCCAATATTATATTCGT+GGG | + | chr1_2:53554880-53554899 | None:intergenic | 30.0% | |
| AGTGTCCAATATTATATTCG+TGG | + | chr1_2:53554881-53554900 | None:intergenic | 30.0% | |
| TAGATAGTAATGTGCTAGAT+CGG | - | chr1_2:53554936-53554955 | Msa0077110:intron | 30.0% | |
| TGAATAACGGTATTGTATGA+TGG | - | chr1_2:53555092-53555111 | Msa0077110:CDS | 30.0% | |
| GATTGATATCATCATTGAGT+TGG | - | chr1_2:53555408-53555427 | Msa0077110:CDS | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | - | chr1_2:53555491-53555510 | Msa0077110:CDS | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | - | chr1_2:53555492-53555511 | Msa0077110:CDS | 30.0% |
| TAACCCAATATACATCAACT+GGG | + | chr1_2:53555498-53555517 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | + | chr1_2:53555499-53555518 | None:intergenic | 30.0% | |
| GCCAACTTAGATTATGTAAA+AGG | + | chr1_2:53555634-53555653 | None:intergenic | 30.0% | |
| TCTCTTCCCTGTTAAAAAAA+AGG | + | chr1_2:53555687-53555706 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAACAGGGAAGAG+AGG | - | chr1_2:53555686-53555705 | Msa0077110:intron | 30.0% |
| ACATCATAATCAGCAAATTG+AGG | - | chr1_2:53555740-53555759 | Msa0077110:intron | 30.0% | |
| TCACAAATCACTATACAGAT+TGG | - | chr1_2:53555772-53555791 | Msa0077110:intron | 30.0% | |
| ! | ATATTTTCTTCCCATACTGA+AGG | - | chr1_2:53555835-53555854 | Msa0077110:intron | 30.0% |
| AACACTTCCATAATTTCAGT+CGG | + | chr1_2:53555925-53555944 | None:intergenic | 30.0% | |
| CATTGATGTGTTGAAAAAGA+AGG | - | chr1_2:53556141-53556160 | Msa0077110:intron | 30.0% | |
| TATGATCATATCCAGAAAAC+AGG | - | chr1_2:53556229-53556248 | Msa0077110:intron | 30.0% | |
| !!! | CATTGATTCTTCTTTGGTTT+TGG | + | chr1_2:53556515-53556534 | None:intergenic | 30.0% |
| CTTGTCAACAATAAAGAGAA+TGG | + | chr1_2:53556877-53556896 | None:intergenic | 30.0% | |
| CAACAATTCACCAAGTATTA+TGG | - | chr1_2:53557011-53557030 | Msa0077110:intron | 30.0% | |
| AATAGTGGCATCATTTACTA+TGG | + | chr1_2:53557039-53557058 | None:intergenic | 30.0% | |
| !! | TTCAATTGAGTTGATTTGCT+TGG | - | chr1_2:53557073-53557092 | Msa0077110:intron | 30.0% |
| ! | AAAATGTGGTTAACACCTTT+TGG | - | chr1_2:53557108-53557127 | Msa0077110:intron | 30.0% |
| CTTTCATACAAAAATGAGTC+AGG | - | chr1_2:53557206-53557225 | Msa0077110:intron | 30.0% | |
| GCAGAGTTAAAACTATCAAA+TGG | + | chr1_2:53557769-53557788 | None:intergenic | 30.0% | |
| ! | ATTACTCTTGTGGGTTACTA+TGG | + | chr1_2:53552845-53552864 | None:intergenic | 35.0% |
| TGCACTAGAATTACTCTTGT+GGG | + | chr1_2:53552854-53552873 | None:intergenic | 35.0% | |
| GTTCATCAGACATGGTTAAA+GGG | + | chr1_2:53552955-53552974 | None:intergenic | 35.0% | |
| TGTTCATCAGACATGGTTAA+AGG | + | chr1_2:53552956-53552975 | None:intergenic | 35.0% | |
| CAAAATGTGTTCATCAGACA+TGG | + | chr1_2:53552963-53552982 | None:intergenic | 35.0% | |
| ! | CATGTCTGATGAACACATTT+TGG | - | chr1_2:53552961-53552980 | Msa0077110:three_prime_UTR | 35.0% |
| ! | CATCAAACTTAGTGTCACTA+TGG | + | chr1_2:53553009-53553028 | None:intergenic | 35.0% |
| ! | GAATACCTTTTCAACATTGC+TGG | - | chr1_2:53553031-53553050 | Msa0077110:three_prime_UTR | 35.0% |
| TGTTTCCAGCAATGTTGAAA+AGG | + | chr1_2:53553039-53553058 | None:intergenic | 35.0% | |
| GCACAAAGTTATCAACAACA+TGG | + | chr1_2:53553078-53553097 | None:intergenic | 35.0% | |
| ACATGAATATCAAGCAAGTG+TGG | - | chr1_2:53553196-53553215 | Msa0077110:CDS | 35.0% | |
| ! | TTGTGACTGAAGAGAGATTT+TGG | - | chr1_2:53553428-53553447 | Msa0077110:CDS | 35.0% |
| ! | TGTGACTGAAGAGAGATTTT+GGG | - | chr1_2:53553429-53553448 | Msa0077110:CDS | 35.0% |
| AAAGTGTGTAACAAGTAGGA+CGG | - | chr1_2:53553730-53553749 | Msa0077110:intron | 35.0% | |
| !!! | GGTGGTTTTGAGTTCAAATT+TGG | + | chr1_2:53554362-53554381 | None:intergenic | 35.0% |
| GCTAAGAGAAAAAAAGTTGG+TGG | + | chr1_2:53554380-53554399 | None:intergenic | 35.0% | |
| ACAAACTCATGGGATTATAG+GGG | + | chr1_2:53554426-53554445 | None:intergenic | 35.0% | |
| GCAATGTTGTAACAAACTCA+TGG | + | chr1_2:53554437-53554456 | None:intergenic | 35.0% | |
| !! | AGTCATTTTGAAGGAAAGAG+AGG | + | chr1_2:53554772-53554791 | None:intergenic | 35.0% |
| ! | CTATTTCTTTCTCTCTCAAG+AGG | + | chr1_2:53554919-53554938 | None:intergenic | 35.0% |
| ATAACGGTATTGTATGATGG+TGG | - | chr1_2:53555095-53555114 | Msa0077110:CDS | 35.0% | |
| ACAAGCTGTCAAACTATTCA+TGG | - | chr1_2:53555179-53555198 | Msa0077110:CDS | 35.0% | |
| CAAGCTGTCAAACTATTCAT+GGG | - | chr1_2:53555180-53555199 | Msa0077110:CDS | 35.0% | |
| ! | AACTATTCATGGGTTGCAAA+AGG | - | chr1_2:53555190-53555209 | Msa0077110:CDS | 35.0% |
| !! | TCTGCTTTTGCTCTTGAATA+TGG | - | chr1_2:53555226-53555245 | Msa0077110:CDS | 35.0% |
| CTTCATTATGGCCAATGATT+TGG | + | chr1_2:53555296-53555315 | None:intergenic | 35.0% | |
| ! | AAAACACCGCTATGCAATTT+TGG | - | chr1_2:53555351-53555370 | Msa0077110:CDS | 35.0% |
| TAACCTCCAAAATTGCATAG+CGG | + | chr1_2:53555360-53555379 | None:intergenic | 35.0% | |
| GGAGGTTAACAATCTGATTA+AGG | - | chr1_2:53555372-53555391 | Msa0077110:CDS | 35.0% | |
| ACAATCTGATTAAGGCAACA+TGG | - | chr1_2:53555380-53555399 | Msa0077110:CDS | 35.0% | |
| CTGAGTAACAATTGCAACAA+TGG | + | chr1_2:53555527-53555546 | None:intergenic | 35.0% | |
| AAACTTACGAATCAGTAGTG+AGG | + | chr1_2:53555558-53555577 | None:intergenic | 35.0% | |
| ACACTTCCATAATTTCAGTC+GGG | + | chr1_2:53555924-53555943 | None:intergenic | 35.0% | |
| !!! | TGTTTAAGGTGCTGATTTTC+TGG | - | chr1_2:53555941-53555960 | Msa0077110:intron | 35.0% |
| TTAGTGGAACCACAATAGAT+GGG | + | chr1_2:53555985-53556004 | None:intergenic | 35.0% | |
| TTTAGTGGAACCACAATAGA+TGG | + | chr1_2:53555986-53556005 | None:intergenic | 35.0% | |
| !! | AACACTAACCAGTGTTTTAG+TGG | + | chr1_2:53556001-53556020 | None:intergenic | 35.0% |
| GTTCTTGTTCATTTCAACCT+TGG | - | chr1_2:53556168-53556187 | Msa0077110:intron | 35.0% | |
| TCATAGTTGAGATGTCTTCT+TGG | + | chr1_2:53556201-53556220 | None:intergenic | 35.0% | |
| CATCACTTTGCAACCATAAA+AGG | - | chr1_2:53556355-53556374 | Msa0077110:intron | 35.0% | |
| ! | TATGAACCTGATGCCTTTTA+TGG | + | chr1_2:53556371-53556390 | None:intergenic | 35.0% |
| ATTCATGTTTGGGGAGTAAA+GGG | - | chr1_2:53556478-53556497 | Msa0077110:intron | 35.0% | |
| !!! | CTTCTTTGGTTTTGGTGAAA+GGG | + | chr1_2:53556507-53556526 | None:intergenic | 35.0% |
| !!! | TCTTCTTTGGTTTTGGTGAA+AGG | + | chr1_2:53556508-53556527 | None:intergenic | 35.0% |
| !! | TTGGGTCATTGATTCTTCTT+TGG | + | chr1_2:53556521-53556540 | None:intergenic | 35.0% |
| AATGACCCAAGAACTAATGT+GGG | - | chr1_2:53556531-53556550 | Msa0077110:intron | 35.0% | |
| ! | ATCAACCCACATTAGTTCTT+GGG | + | chr1_2:53556539-53556558 | None:intergenic | 35.0% |
| ! | AATCAACCCACATTAGTTCT+TGG | + | chr1_2:53556540-53556559 | None:intergenic | 35.0% |
| AGATTAAGTGGGTAAGTGTT+TGG | - | chr1_2:53556584-53556603 | Msa0077110:intron | 35.0% | |
| CATTTGTGGAGGTAAAGATA+AGG | - | chr1_2:53556980-53556999 | Msa0077110:intron | 35.0% | |
| AGTCTTTGTCTGCTTAATAG+TGG | + | chr1_2:53557054-53557073 | None:intergenic | 35.0% | |
| !! | GGTTAACACCTTTTGGAAAA+AGG | - | chr1_2:53557115-53557134 | Msa0077110:intron | 35.0% |
| ! | ACTCTCTACCTTTTTCCAAA+AGG | + | chr1_2:53557126-53557145 | None:intergenic | 35.0% |
| !! | GTTTGTTTTCTCATGCATCT+TGG | + | chr1_2:53557159-53557178 | None:intergenic | 35.0% |
| ATACAAAAATGAGTCAGGGT+GGG | - | chr1_2:53557211-53557230 | Msa0077110:intron | 35.0% | |
| AGCAATCACAATAGAACCTT+TGG | + | chr1_2:53557246-53557265 | None:intergenic | 35.0% | |
| GTTTGACAAATGGAAAGATG+TGG | - | chr1_2:53557304-53557323 | Msa0077110:intron | 35.0% | |
| CATCAACATTAGGAATCTCA+AGG | + | chr1_2:53557406-53557425 | None:intergenic | 35.0% | |
| CTTGAGATTCCTAATGTTGA+TGG | - | chr1_2:53557404-53557423 | Msa0077110:CDS | 35.0% | |
| ! | GGGATTTTTCCATCAACATT+AGG | + | chr1_2:53557416-53557435 | None:intergenic | 35.0% |
| TGATAAACACTTCCATTGTG+CGG | + | chr1_2:53557466-53557485 | None:intergenic | 35.0% | |
| ! | GCATTTTCTTCTAAGTTCTG+TGG | - | chr1_2:53557570-53557589 | Msa0077110:CDS | 35.0% |
| GCATTATCGTTGATCATAGT+AGG | - | chr1_2:53557661-53557680 | Msa0077110:CDS | 35.0% | |
| TCACGAATGCAACTAAAAGA+AGG | - | chr1_2:53557685-53557704 | Msa0077110:CDS | 35.0% | |
| ! | GTGGGTTACTATGGTTTAGA+AGG | + | chr1_2:53552836-53552855 | None:intergenic | 40.0% |
| GTGCACTAGAATTACTCTTG+TGG | + | chr1_2:53552855-53552874 | None:intergenic | 40.0% | |
| TGTGAATAAGTGATCGCACT+AGG | + | chr1_2:53552904-53552923 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | - | chr1_2:53552905-53552924 | Msa0077110:three_prime_UTR | 40.0% | |
| CAGACATGGTTAAAGGGTTA+TGG | + | chr1_2:53552949-53552968 | None:intergenic | 40.0% | |
| AAGTGTGTAACAAGTAGGAC+GGG | - | chr1_2:53553731-53553750 | Msa0077110:intron | 40.0% | |
| CAAACTCATGGGATTATAGG+GGG | + | chr1_2:53554425-53554444 | None:intergenic | 40.0% | |
| TGTGTAGCTCAAATGGTTTG+AGG | + | chr1_2:53554499-53554518 | None:intergenic | 40.0% | |
| TCTCTCTCAAGAGGTAGAAT+GGG | + | chr1_2:53554910-53554929 | None:intergenic | 40.0% | |
| TTCTCTCTCAAGAGGTAGAA+TGG | + | chr1_2:53554911-53554930 | None:intergenic | 40.0% | |
| !! | TATTGTATGATGGTGGCAGA+TGG | - | chr1_2:53555102-53555121 | Msa0077110:CDS | 40.0% |
| TTGTATGCAATTTCCTCACC+TGG | + | chr1_2:53555139-53555158 | None:intergenic | 40.0% | |
| CTCTTGAATATGGTGAGTTC+TGG | - | chr1_2:53555236-53555255 | Msa0077110:CDS | 40.0% | |
| AGAACCACTTGCCAAATCAT+TGG | - | chr1_2:53555282-53555301 | Msa0077110:CDS | 40.0% | |
| ! | GATTCAGGTTTAGTGAGTTG+AGG | + | chr1_2:53555325-53555344 | None:intergenic | 40.0% |
| AGGCAGGACTTATCTCAATT+TGG | - | chr1_2:53555706-53555725 | Msa0077110:intron | 40.0% | |
| TCAAACCCCGACTGAAATTA+TGG | - | chr1_2:53555915-53555934 | Msa0077110:intron | 40.0% | |
| CACTTCCATAATTTCAGTCG+GGG | + | chr1_2:53555923-53555942 | None:intergenic | 40.0% | |
| TTGTGGTTCCACTAAAACAC+TGG | - | chr1_2:53555990-53556009 | Msa0077110:intron | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | - | chr1_2:53556252-53556271 | Msa0077110:intron | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | + | chr1_2:53556280-53556299 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | + | chr1_2:53556281-53556300 | None:intergenic | 40.0% | |
| TGTGGAGGAATGGAATGATA+AGG | - | chr1_2:53556282-53556301 | Msa0077110:intron | 40.0% | |
| GTGGAGGAATGGAATGATAA+GGG | - | chr1_2:53556283-53556302 | Msa0077110:intron | 40.0% | |
| TGGAGGAATGGAATGATAAG+GGG | - | chr1_2:53556284-53556303 | Msa0077110:intron | 40.0% | |
| AAGTGATGCAACACATACCA+TGG | + | chr1_2:53556343-53556362 | None:intergenic | 40.0% | |
| !! | TTGCAACCATAAAAGGCATC+AGG | - | chr1_2:53556362-53556381 | Msa0077110:intron | 40.0% |
| AGGCATCAGGTTCATAAAAG+AGG | - | chr1_2:53556375-53556394 | Msa0077110:intron | 40.0% | |
| GCATTTCAAGCTGAATCCTT+TGG | - | chr1_2:53556402-53556421 | Msa0077110:intron | 40.0% | |
| GTACTCAACACAACAACCAA+AGG | + | chr1_2:53556421-53556440 | None:intergenic | 40.0% | |
| GTTGTTGTGTTGAGTACACA+AGG | - | chr1_2:53556424-53556443 | Msa0077110:intron | 40.0% | |
| GATTCATGTTTGGGGAGTAA+AGG | - | chr1_2:53556477-53556496 | Msa0077110:intron | 40.0% | |
| CAATGACCCAAGAACTAATG+TGG | - | chr1_2:53556530-53556549 | Msa0077110:intron | 40.0% | |
| TATATCAATGCCAACCAGCA+CGG | + | chr1_2:53556563-53556582 | None:intergenic | 40.0% | |
| TAAGTGGGTAAGTGTTTGGT+TGG | - | chr1_2:53556588-53556607 | Msa0077110:intron | 40.0% | |
| !! | CCTCCCTCTTCATTTTTCAA+AGG | + | chr1_2:53556947-53556966 | None:intergenic | 40.0% |
| ! | CCTTTGAAAAATGAAGAGGG+AGG | - | chr1_2:53556944-53556963 | Msa0077110:intron | 40.0% |
| GATGACACTGTCATCATTTG+TGG | - | chr1_2:53556966-53556985 | Msa0077110:intron | 40.0% | |
| GTGGAGGTAAAGATAAGGAA+TGG | - | chr1_2:53556985-53557004 | Msa0077110:intron | 40.0% | |
| TACTATGGCGCCATAATACT+TGG | + | chr1_2:53557024-53557043 | None:intergenic | 40.0% | |
| GGAGTCTCAACAACAAAATG+TGG | - | chr1_2:53557094-53557113 | Msa0077110:intron | 40.0% | |
| CATACAAAAATGAGTCAGGG+TGG | - | chr1_2:53557210-53557229 | Msa0077110:intron | 40.0% | |
| GGTTCTATTGTGATTGCTGT+TGG | - | chr1_2:53557248-53557267 | Msa0077110:intron | 40.0% | |
| ! | ATTGTGATTGCTGTTGGTCA+TGG | - | chr1_2:53557254-53557273 | Msa0077110:intron | 40.0% |
| ! | TTGTGATTGCTGTTGGTCAT+GGG | - | chr1_2:53557255-53557274 | Msa0077110:intron | 40.0% |
| CTGGACACTCAATAAAGTCT+GGG | + | chr1_2:53557436-53557455 | None:intergenic | 40.0% | |
| TCTGGACACTCAATAAAGTC+TGG | + | chr1_2:53557437-53557456 | None:intergenic | 40.0% | |
| !! | TGGAAGTGTTTATCAGCTAC+AGG | - | chr1_2:53557471-53557490 | Msa0077110:intron | 40.0% |
| CTGCCATAATGGTTAGCATT+AGG | - | chr1_2:53557496-53557515 | Msa0077110:intron | 40.0% | |
| CTGCCTAATGCTAACCATTA+TGG | + | chr1_2:53557502-53557521 | None:intergenic | 40.0% | |
| TTAGCATTAGGCAGCTTCAT+GGG | - | chr1_2:53557508-53557527 | Msa0077110:intron | 40.0% | |
| TCTTGGCTACATCACACAAA+GGG | + | chr1_2:53557636-53557655 | None:intergenic | 40.0% | |
| CAACGATAATGCATGACTCT+TGG | + | chr1_2:53557653-53557672 | None:intergenic | 40.0% | |
| ! | CAACATGGGTTGAACGTGTA+AGG | + | chr1_2:53553063-53553082 | None:intergenic | 45.0% |
| TCAAGCAAGTGTGGAGCAAT+TGG | - | chr1_2:53553205-53553224 | Msa0077110:CDS | 45.0% | |
| TACAGGGTGTGTAGCTCAAA+TGG | + | chr1_2:53554506-53554525 | None:intergenic | 45.0% | |
| TGCTAGATCGGTGATGTGAT+AGG | - | chr1_2:53554948-53554967 | Msa0077110:intron | 45.0% | |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | + | chr1_2:53555280-53555299 | None:intergenic | 45.0% |
| ! | ATGGCCAATGATTTGGCAAG+TGG | + | chr1_2:53555289-53555308 | None:intergenic | 45.0% |
| ! | TTGAGGCACTCGCTTCATTA+TGG | + | chr1_2:53555308-53555327 | None:intergenic | 45.0% |
| !!! | CGGTGTTTTTTGAGCGATTC+AGG | + | chr1_2:53555340-53555359 | None:intergenic | 45.0% |
| ! | ACACCGCTATGCAATTTTGG+AGG | - | chr1_2:53555354-53555373 | Msa0077110:CDS | 45.0% |
| ! | TTTTAACAGGGAAGAGAGGC+AGG | - | chr1_2:53555690-53555709 | Msa0077110:intron | 45.0% |
| CCACAATAGATGGGTGTTTG+TGG | + | chr1_2:53555976-53555995 | None:intergenic | 45.0% | |
| CCACAAACACCCATCTATTG+TGG | - | chr1_2:53555973-53555992 | Msa0077110:intron | 45.0% | |
| !!! | TGTGTTGGCTTCCTGTTTTC+TGG | + | chr1_2:53556243-53556262 | None:intergenic | 45.0% |
| GAAGCCAACACAAGATTGTG+TGG | - | chr1_2:53556251-53556270 | Msa0077110:intron | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | + | chr1_2:53556258-53556277 | None:intergenic | 45.0% | |
| AGGAATGGAATGATAAGGGG+AGG | - | chr1_2:53556287-53556306 | Msa0077110:intron | 45.0% | |
| CCATGGCATCTTAGACTTCA+AGG | + | chr1_2:53556326-53556345 | None:intergenic | 45.0% | |
| ! | CCTTGAAGTCTAAGATGCCA+TGG | - | chr1_2:53556323-53556342 | Msa0077110:intron | 45.0% |
| GACACTGTCATCATTTGTGG+AGG | - | chr1_2:53556969-53556988 | Msa0077110:intron | 45.0% | |
| AAAGATGTGGTGAGCAGCAA+GGG | - | chr1_2:53557317-53557336 | Msa0077110:intron | 45.0% | |
| GTTAGCATTAGGCAGCTTCA+TGG | - | chr1_2:53557507-53557526 | Msa0077110:intron | 45.0% | |
| CTTGGCTACATCACACAAAG+GGG | + | chr1_2:53557635-53557654 | None:intergenic | 45.0% | |
| CTCTTGGCTACATCACACAA+AGG | + | chr1_2:53557637-53557656 | None:intergenic | 45.0% | |
| !!! | ATATTTTTAAGTAATATTTT+TGG | - | chr1_2:53553373-53553392 | Msa0077110:CDS | 5.0% |
| !!! | TAAAAAATAAATTTTCATTA+TGG | + | chr1_2:53553627-53553646 | None:intergenic | 5.0% |
| !!! | ATATTTTTAACTTTATATAA+AGG | - | chr1_2:53555051-53555070 | Msa0077110:intron | 5.0% |
| GGTGAAGTGAAGTTAGCAGG+GGG | + | chr1_2:53553242-53553261 | None:intergenic | 50.0% | |
| CGGTGAAGTGAAGTTAGCAG+GGG | + | chr1_2:53553243-53553262 | None:intergenic | 50.0% | |
| GCGGTGAAGTGAAGTTAGCA+GGG | + | chr1_2:53553244-53553263 | None:intergenic | 50.0% | |
| AGCGGTGAAGTGAAGTTAGC+AGG | + | chr1_2:53553245-53553264 | None:intergenic | 50.0% | |
| GGGGGTTGTGTAGCTCAATT+GGG | + | chr1_2:53554407-53554426 | None:intergenic | 50.0% | |
| AGGGGGTTGTGTAGCTCAAT+TGG | + | chr1_2:53554408-53554427 | None:intergenic | 50.0% | |
| CAACTCACGTCACGACATCA+AGG | - | chr1_2:53555438-53555457 | Msa0077110:CDS | 50.0% | |
| ACTGGGAATTGCTCCAAAGC+TGG | + | chr1_2:53555481-53555500 | None:intergenic | 50.0% | |
| GTCTTCTTGGCAGATGTCCA+AGG | + | chr1_2:53556188-53556207 | None:intergenic | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | - | chr1_2:53556264-53556283 | Msa0077110:intron | 50.0% | |
| !! | AATGTGGGTTGATTCCGTGC+TGG | - | chr1_2:53556546-53556565 | Msa0077110:intron | 50.0% |
| GGGTGGGCAATTGTAACCAA+AGG | - | chr1_2:53557227-53557246 | Msa0077110:intron | 50.0% | |
| GAAAGATGTGGTGAGCAGCA+AGG | - | chr1_2:53557316-53557335 | Msa0077110:intron | 50.0% | |
| TCCAGATTGTCACCGCACAA+TGG | - | chr1_2:53557451-53557470 | Msa0077110:intron | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | + | chr1_2:53557455-53557474 | None:intergenic | 50.0% | |
| ! | AGCTACAGGTGCTGCCATAA+TGG | - | chr1_2:53557485-53557504 | Msa0077110:intron | 50.0% |
| ATGGTGGCAGATGGCATGCA+AGG | - | chr1_2:53555111-53555130 | Msa0077110:CDS | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | + | chr1_2:53555469-53555488 | None:intergenic | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | - | chr1_2:53556267-53556286 | Msa0077110:intron | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | - | chr1_2:53556272-53556291 | Msa0077110:intron | 55.0% | |
| !! | TGGGTTGATTCCGTGCTGGT+TGG | - | chr1_2:53556550-53556569 | Msa0077110:intron | 55.0% |
| CAGATGGCATGCAAGGCTCC+AGG | - | chr1_2:53555118-53555137 | Msa0077110:CDS | 60.0% | |
| GCCAGCTCTTGCACCAGCTT+TGG | - | chr1_2:53555465-53555484 | Msa0077110:CDS | 60.0% | |
| GGCATGCAAGGCTCCAGGTG+AGG | - | chr1_2:53555123-53555142 | Msa0077110:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 53552803 | 53557839 | 53552803 | ID=Msa0077110;Name=Msa0077110 |
| chr1_2 | mRNA | 53552803 | 53557839 | 53552803 | ID=Msa0077110-mRNA-1;Parent=Msa0077110;Name=Msa0077110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=90|1|1|1|1|1|7|328|664 |
| chr1_2 | exon | 53552803 | 53553682 | 53552803 | ID=Msa0077110-mRNA-1:exon:16612;Parent=Msa0077110-mRNA-1 |
| chr1_2 | exon | 53554048 | 53554506 | 53554048 | ID=Msa0077110-mRNA-1:exon:16611;Parent=Msa0077110-mRNA-1 |
| chr1_2 | exon | 53554631 | 53554764 | 53554631 | ID=Msa0077110-mRNA-1:exon:16610;Parent=Msa0077110-mRNA-1 |
| chr1_2 | exon | 53554849 | 53554943 | 53554849 | ID=Msa0077110-mRNA-1:exon:16609;Parent=Msa0077110-mRNA-1 |
| chr1_2 | exon | 53555073 | 53555521 | 53555073 | ID=Msa0077110-mRNA-1:exon:16608;Parent=Msa0077110-mRNA-1 |
| chr1_2 | exon | 53557350 | 53557448 | 53557350 | ID=Msa0077110-mRNA-1:exon:16607;Parent=Msa0077110-mRNA-1 |
| chr1_2 | exon | 53557543 | 53557839 | 53557543 | ID=Msa0077110-mRNA-1:exon:16606;Parent=Msa0077110-mRNA-1 |
| chr1_2 | five_prime_UTR | 53557750 | 53557839 | 53557750 | ID=Msa0077110-mRNA-1:five_prime_utr;Parent=Msa0077110-mRNA-1 |
| chr1_2 | CDS | 53557543 | 53557749 | 53557543 | ID=Msa0077110-mRNA-1:cds;Parent=Msa0077110-mRNA-1 |
| chr1_2 | CDS | 53557350 | 53557448 | 53557350 | ID=Msa0077110-mRNA-1:cds;Parent=Msa0077110-mRNA-1 |
| chr1_2 | CDS | 53555073 | 53555521 | 53555073 | ID=Msa0077110-mRNA-1:cds;Parent=Msa0077110-mRNA-1 |
| chr1_2 | CDS | 53554849 | 53554943 | 53554849 | ID=Msa0077110-mRNA-1:cds;Parent=Msa0077110-mRNA-1 |
| chr1_2 | CDS | 53554631 | 53554764 | 53554631 | ID=Msa0077110-mRNA-1:cds;Parent=Msa0077110-mRNA-1 |
| chr1_2 | CDS | 53554048 | 53554506 | 53554048 | ID=Msa0077110-mRNA-1:cds;Parent=Msa0077110-mRNA-1 |
| chr1_2 | CDS | 53553131 | 53553682 | 53553131 | ID=Msa0077110-mRNA-1:cds;Parent=Msa0077110-mRNA-1 |
| chr1_2 | three_prime_UTR | 53552803 | 53553130 | 53552803 | ID=Msa0077110-mRNA-1:three_prime_utr;Parent=Msa0077110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
