Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030930 | sp|P14749|AGAL_CYATE | 80.835 | 407 | 75 | 1 | 6 | 412 | 7 | 410 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030930 | Msa0074550 | 0.924910 | 3.744205e-90 | -8.615850e-47 |
| Msa0030930 | Msa0125970 | 0.923511 | 2.412284e-89 | -8.615850e-47 |
| Msa0030930 | Msa0170940 | 0.998971 | 4.181096e-284 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030930 | MtrunA17_Chr1g0188751 | 98.309 | 414 | 7 | 0 | 1 | 414 | 1 | 414 | 0.0 | 840 |
| Msa0030930 | MtrunA17_Chr1g0188761 | 80.440 | 409 | 75 | 3 | 3 | 411 | 4 | 407 | 0.0 | 697 |
| Msa0030930 | MtrunA17_Chr6g0478231 | 77.062 | 388 | 88 | 1 | 24 | 411 | 33 | 419 | 0.0 | 636 |
| Msa0030930 | MtrunA17_Chr7g0245111 | 63.660 | 377 | 135 | 2 | 37 | 411 | 31 | 407 | 0.0 | 519 |
| Msa0030930 | MtrunA17_Chr7g0245121 | 64.151 | 371 | 131 | 2 | 43 | 411 | 36 | 406 | 0.0 | 515 |
| Msa0030930 | MtrunA17_Chr3g0128871 | 56.802 | 419 | 170 | 5 | 3 | 411 | 8 | 425 | 1.74e-175 | 496 |
| Msa0030930 | MtrunA17_Chr6g0485451 | 90.455 | 220 | 21 | 0 | 195 | 414 | 1 | 220 | 5.41e-145 | 411 |
| Msa0030930 | MtrunA17_Chr8g0381411 | 24.204 | 471 | 238 | 15 | 58 | 412 | 38 | 505 | 2.14e-25 | 108 |
| Msa0030930 | MtrunA17_Chr2g0327891 | 27.221 | 349 | 164 | 12 | 58 | 319 | 42 | 387 | 5.13e-22 | 98.6 |
| Msa0030930 | MtrunA17_Chr3g0123531 | 26.611 | 357 | 168 | 12 | 54 | 319 | 36 | 389 | 5.26e-22 | 98.6 |
| Msa0030930 | MtrunA17_Chr8g0381441 | 26.000 | 350 | 169 | 11 | 58 | 320 | 49 | 395 | 1.27e-21 | 95.9 |
| Msa0030930 | MtrunA17_Chr8g0381461 | 26.039 | 361 | 175 | 13 | 46 | 320 | 29 | 383 | 3.75e-20 | 92.8 |
| Msa0030930 | MtrunA17_Chr8g0381451 | 26.243 | 362 | 174 | 13 | 46 | 320 | 29 | 384 | 4.37e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030930 | AT5G08370.1 | 69.388 | 392 | 119 | 1 | 24 | 414 | 5 | 396 | 0.0 | 588 |
| Msa0030930 | AT5G08370.2 | 72.951 | 366 | 99 | 0 | 49 | 414 | 5 | 370 | 0.0 | 585 |
| Msa0030930 | AT5G08380.1 | 59.124 | 411 | 160 | 4 | 3 | 411 | 4 | 408 | 0.0 | 511 |
| Msa0030930 | AT3G56310.1 | 58.810 | 420 | 160 | 7 | 4 | 412 | 13 | 430 | 6.25e-176 | 498 |
| Msa0030930 | AT3G56310.2 | 55.238 | 420 | 151 | 8 | 4 | 412 | 13 | 406 | 1.37e-157 | 451 |
| Msa0030930 | AT5G08380.2 | 60.063 | 318 | 122 | 2 | 3 | 320 | 4 | 316 | 1.53e-143 | 411 |
| Msa0030930 | AT3G26380.2 | 25.788 | 349 | 169 | 12 | 58 | 319 | 42 | 387 | 3.91e-22 | 98.6 |
| Msa0030930 | AT3G26380.1 | 25.788 | 349 | 169 | 12 | 58 | 319 | 42 | 387 | 8.76e-22 | 98.2 |
Find 130 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTGGCCTTGCTGCTTT+AGG | 0.151894 | 1_1:-57440053 | Msa0030930:CDS |
| GGGTACAAATATATTAATTT+AGG | 0.200247 | 1_1:-57440032 | Msa0030930:intron |
| TCTACAGCTGCTCGTTTATT+AGG | 0.206786 | 1_1:-57441856 | Msa0030930:CDS |
| CTTGCATCAACTATAGTTTC+TGG | 0.211985 | 1_1:+57437767 | None:intergenic |
| TTTATTTGTCGCTCCTCTTT+AGG | 0.219151 | 1_1:+57437463 | None:intergenic |
| TAGTTGATGCAAGAGATTTA+TGG | 0.246206 | 1_1:-57437757 | Msa0030930:CDS |
| CAACTGGCCTTGCTGCTTTA+GGG | 0.247842 | 1_1:-57440052 | Msa0030930:CDS |
| ATGCCAAAACATTTGCTTCT+TGG | 0.258381 | 1_1:-57439409 | Msa0030930:CDS |
| CCAACTATTTCCCACACTTT+TGG | 0.260055 | 1_1:+57438943 | None:intergenic |
| TGGAATAGCTGGAACCATTT+TGG | 0.262090 | 1_1:-57440218 | Msa0030930:CDS |
| ATTGCATTTGCATGGATCTT+TGG | 0.270136 | 1_1:-57442033 | Msa0030930:five_prime_UTR |
| ACAAAGTAGCAGTGGTCTTA+TGG | 0.272566 | 1_1:-57437847 | Msa0030930:CDS |
| CATTGATATCACAACCAAAA+TGG | 0.277961 | 1_1:+57440204 | None:intergenic |
| ATCGTGCCCATTTCAGCATT+TGG | 0.278804 | 1_1:-57438475 | Msa0030930:CDS |
| TTCAAAATGGAATTCAGTTT+TGG | 0.279781 | 1_1:+57442157 | None:intergenic |
| TGCCAAAACATTTGCTTCTT+GGG | 0.296895 | 1_1:-57439408 | Msa0030930:intron |
| CAGGCGATATAGAAGATAAT+TGG | 0.322906 | 1_1:-57438913 | Msa0030930:CDS |
| TCAACACAATCATTGGTTTC+GGG | 0.344023 | 1_1:-57437638 | Msa0030930:CDS |
| CTCAACACAATCATTGGTTT+CGG | 0.346117 | 1_1:-57437639 | Msa0030930:CDS |
| AATTTGATGAATGGATGATA+TGG | 0.349429 | 1_1:+57442053 | None:intergenic |
| CTAATGCCCAAATGCTGAAA+TGG | 0.353093 | 1_1:+57438468 | None:intergenic |
| TATATACTAGTGTTTGCTTC+AGG | 0.361288 | 1_1:+57442009 | None:intergenic |
| AGTTGATGCAAGAGATTTAT+GGG | 0.361924 | 1_1:-57437756 | Msa0030930:CDS |
| TCGTGCCCATTTCAGCATTT+GGG | 0.362441 | 1_1:-57438474 | Msa0030930:CDS |
| TTTAATAAAGCTTCACTCAT+TGG | 0.363260 | 1_1:+57439112 | None:intergenic |
| ACAATGATATTAGGGGAATA+TGG | 0.364125 | 1_1:-57439662 | Msa0030930:intron |
| CAAACCATTCACCCATTCAT+TGG | 0.368983 | 1_1:-57437487 | Msa0030930:three_prime_UTR |
| GAAAAGCAACAATGATTTAG+AGG | 0.374068 | 1_1:-57438134 | Msa0030930:intron |
| TACCCAAGAAGCAAATGTTT+TGG | 0.374219 | 1_1:+57439406 | None:intergenic |
| AAGAGTTATATGCTGCAAAA+TGG | 0.375191 | 1_1:-57441790 | Msa0030930:CDS |
| TAAACGTATGCCTGGATCAT+TGG | 0.378772 | 1_1:-57439447 | Msa0030930:CDS |
| CAACTATAGTTTCTGGTTCA+AGG | 0.392974 | 1_1:+57437774 | None:intergenic |
| TAAAGAGGAGCGACAAATAA+AGG | 0.397492 | 1_1:-57437461 | Msa0030930:three_prime_UTR |
| TGTATGTTCTGACACCAAAA+AGG | 0.398154 | 1_1:-57437577 | Msa0030930:CDS |
| AAATAGGCTCCTCTATTAGT+TGG | 0.398912 | 1_1:-57438353 | Msa0030930:intron |
| TGAAGGAAACGTTGAAGCCT+TGG | 0.402252 | 1_1:+57439636 | None:intergenic |
| AGAGAAGAAGATCGGCCTTC+GGG | 0.403250 | 1_1:+57439087 | None:intergenic |
| GCAGATAAACTTGGAGTTCA+AGG | 0.405868 | 1_1:-57438166 | Msa0030930:intron |
| AACGTTTCCTTCAGGAATCA+AGG | 0.411562 | 1_1:-57439626 | Msa0030930:CDS |
| TTATAGATGCAAACGACAAA+TGG | 0.414952 | 1_1:-57438689 | Msa0030930:CDS |
| GAAAGTTTAATCCGAGATAC+AGG | 0.426792 | 1_1:-57440182 | Msa0030930:intron |
| AATGGATGATATGGGTGAAC+AGG | 0.430167 | 1_1:+57442062 | None:intergenic |
| GTAGCACTCAACACAATCAT+TGG | 0.438786 | 1_1:-57437645 | Msa0030930:intron |
| TGATCATCAGATGGAATAGC+TGG | 0.439537 | 1_1:-57440229 | Msa0030930:intron |
| CATAGGAAAGGCTTGAAGTT+GGG | 0.440372 | 1_1:-57439586 | Msa0030930:CDS |
| TCCTCTTTAGGACCAATGAA+TGG | 0.444599 | 1_1:+57437475 | None:intergenic |
| CTCTAGCTCATTATATTCAT+AGG | 0.449054 | 1_1:-57439603 | Msa0030930:CDS |
| AGGACCAATGAATGGGTGAA+TGG | 0.449575 | 1_1:+57437483 | None:intergenic |
| TTCATCAAATTGCATTTGCA+TGG | 0.450766 | 1_1:-57442041 | Msa0030930:five_prime_UTR |
| GCCGACGCAATGGTGTCAAC+TGG | 0.451138 | 1_1:-57440068 | Msa0030930:CDS |
| TTTCCAACTTCAAGCATGTC+AGG | 0.457946 | 1_1:+57438521 | None:intergenic |
| TTTGGTCATGCAGATAAACT+TGG | 0.458528 | 1_1:-57438175 | Msa0030930:intron |
| AAACGTATGCCTGGATCATT+GGG | 0.461695 | 1_1:-57439446 | Msa0030930:CDS |
| TGCAAATGCAATTTGATGAA+TGG | 0.461865 | 1_1:+57442044 | None:intergenic |
| TAGAGAAGAAGATCGGCCTT+CGG | 0.463522 | 1_1:+57439086 | None:intergenic |
| GACAAATGGGCATCTTATGC+TGG | 0.464580 | 1_1:-57438675 | Msa0030930:CDS |
| CCCATTCATTGGTCCTAAAG+AGG | 0.466998 | 1_1:-57437476 | Msa0030930:three_prime_UTR |
| GATCCTGACATGCTTGAAGT+TGG | 0.469508 | 1_1:-57438524 | Msa0030930:CDS |
| TAATGCCCAAATGCTGAAAT+GGG | 0.470549 | 1_1:+57438469 | None:intergenic |
| GGAAATAGTTGGAGAACAAC+AGG | 0.473859 | 1_1:-57438932 | Msa0030930:CDS |
| GACATGCTTGAAGTTGGAAA+TGG | 0.481080 | 1_1:-57438518 | Msa0030930:CDS |
| TTGGGAGTTTATTCAGATGC+CGG | 0.485209 | 1_1:-57439568 | Msa0030930:CDS |
| CAATATTTATGAACACTACA+AGG | 0.489847 | 1_1:+57441893 | None:intergenic |
| CAGCATTTGGGCATTAGCTA+AGG | 0.494033 | 1_1:-57438462 | Msa0030930:intron |
| GGACAATTGATGATATAGAT+TGG | 0.494395 | 1_1:-57442189 | Msa0030930:five_prime_UTR |
| TATGATAATTGTGAAAATAA+CGG | 0.494743 | 1_1:-57439257 | Msa0030930:CDS |
| AAGGCTTCAACGTTTCCTTC+AGG | 0.495513 | 1_1:-57439634 | Msa0030930:CDS |
| GAAGTTATTGCAGTAAATCA+AGG | 0.496776 | 1_1:-57438278 | Msa0030930:intron |
| TATAGATGCAAACGACAAAT+GGG | 0.498323 | 1_1:-57438688 | Msa0030930:CDS |
| TCATAGGAAAGGCTTGAAGT+TGG | 0.501081 | 1_1:-57439587 | Msa0030930:CDS |
| TGTATCCACTCTAGAGAAGA+AGG | 0.502090 | 1_1:-57441815 | Msa0030930:CDS |
| GAAGGAAACGTTGAAGCCTT+GGG | 0.511297 | 1_1:+57439637 | None:intergenic |
| CTTCTCTAGAGTGGATACAT+TGG | 0.511662 | 1_1:+57441819 | None:intergenic |
| TATATGCTGCAAAATGGACT+TGG | 0.511789 | 1_1:-57441784 | Msa0030930:CDS |
| ATGGGAAGATCCTGCAACGT+GGG | 0.517774 | 1_1:-57438966 | Msa0030930:CDS |
| ATGCAACAGTTACTGCGTCT+TGG | 0.519706 | 1_1:-57437808 | Msa0030930:CDS |
| ATTTCATGTCCCAATGATCC+AGG | 0.521509 | 1_1:+57439437 | None:intergenic |
| AATAAAGCTTCACTCATTGG+TGG | 0.521866 | 1_1:+57439115 | None:intergenic |
| AAACGAGCAGCTGTAGATGA+TGG | 0.525810 | 1_1:+57441862 | None:intergenic |
| GACAATTGATGATATAGATT+GGG | 0.525933 | 1_1:-57442188 | Msa0030930:five_prime_UTR |
| CCAAAAGTGTGGGAAATAGT+TGG | 0.526021 | 1_1:-57438943 | Msa0030930:CDS |
| ACTTGTAGTAAACGTATGCC+TGG | 0.526377 | 1_1:-57439455 | Msa0030930:CDS |
| TTGCACTTTCAATGAACTTG+AGG | 0.526529 | 1_1:+57441947 | None:intergenic |
| CTTAACCTTCTTCTCTAGAG+TGG | 0.530979 | 1_1:+57441810 | None:intergenic |
| CCTCTTTAGGACCAATGAAT+GGG | 0.532659 | 1_1:+57437476 | None:intergenic |
| ACTTGGACGTACTCCTCCCA+TGG | 0.536006 | 1_1:-57441767 | Msa0030930:CDS |
| ATATTACATCCAACTAATAG+AGG | 0.536794 | 1_1:+57438344 | None:intergenic |
| ACGGAATAAGCGTTCGCGAA+AGG | 0.537756 | 1_1:-57439238 | Msa0030930:intron |
| TGGGAGTTTATTCAGATGCC+GGG | 0.538487 | 1_1:-57439567 | Msa0030930:intron |
| TCTTCTTCTCTATGTGTGAA+TGG | 0.540517 | 1_1:-57439075 | Msa0030930:intron |
| TAATTACCATTCCATCCTCC+AGG | 0.541589 | 1_1:+57438651 | None:intergenic |
| GTTGCTTATCAATTCATATG+TGG | 0.544672 | 1_1:+57438304 | None:intergenic |
| CTTATGCTGGACCTGGAGGA+TGG | 0.545149 | 1_1:-57438662 | Msa0030930:CDS |
| TGGGCATCTTATGCTGGACC+TGG | 0.550800 | 1_1:-57438669 | Msa0030930:CDS |
| TGCAACGTGGGCCAAAAGTG+TGG | 0.554880 | 1_1:-57438954 | Msa0030930:CDS |
| ATTTGATGAATGGATGATAT+GGG | 0.556106 | 1_1:+57442054 | None:intergenic |
| CCTATTGCAGTAAAATCAAG+TGG | 0.558926 | 1_1:+57437340 | None:intergenic |
| AAGCTCTAGCTAGCACAAGA+AGG | 0.559064 | 1_1:-57437283 | Msa0030930:three_prime_UTR |
| TGATAATGATACCTGTATCT+CGG | 0.559350 | 1_1:+57440171 | None:intergenic |
| CTACGGTGACAGGTATGGGC+AGG | 0.562492 | 1_1:-57437884 | Msa0030930:intron |
| TATTATTTCAGCCGACGCAA+TGG | 0.564004 | 1_1:-57440078 | Msa0030930:intron |
| GCTCATTATATTCATAGGAA+AGG | 0.565444 | 1_1:-57439598 | Msa0030930:CDS |
| TGGATGTAATATTCAAGCAA+TGG | 0.566327 | 1_1:-57438333 | Msa0030930:CDS |
| AATTGATGATATAGATTGGG+TGG | 0.573963 | 1_1:-57442185 | Msa0030930:five_prime_UTR |
| TTAGGGGAATATGGTTCCCA+AGG | 0.579443 | 1_1:-57439653 | Msa0030930:intron |
| CTTGGACGTACTCCTCCCAT+GGG | 0.579757 | 1_1:-57441766 | Msa0030930:CDS |
| GCCAGTTGACACCATTGCGT+CGG | 0.584197 | 1_1:+57440067 | None:intergenic |
| ACTGCGTCTTGGTCTGACAT+AGG | 0.588981 | 1_1:-57437797 | Msa0030930:CDS |
| GGAACTTAATCGAGACTCAA+AGG | 0.593389 | 1_1:-57439868 | Msa0030930:intron |
| AAGTGCAATGGCAAAGATGA+TGG | 0.594220 | 1_1:-57441932 | Msa0030930:exon |
| AATAACAATAAAAGTCACAT+AGG | 0.596393 | 1_1:-57442136 | Msa0030930:five_prime_UTR |
| ATATAGAAGATAATTGGAAG+AGG | 0.597307 | 1_1:-57438907 | Msa0030930:intron |
| GCTGGACCTGGAGGATGGAA+TGG | 0.600529 | 1_1:-57438657 | Msa0030930:intron |
| GCAACGTGGGCCAAAAGTGT+GGG | 0.604665 | 1_1:-57438953 | Msa0030930:CDS |
| CAAGTTCATTGAAAGTGCAA+TGG | 0.605661 | 1_1:-57441944 | Msa0030930:exon |
| GCTAGAGCCTTGATTCCTGA+AGG | 0.622037 | 1_1:+57439619 | None:intergenic |
| ATGAGGGTAGCTTACCCCAT+GGG | 0.623626 | 1_1:+57441751 | None:intergenic |
| ATGCTTGAAGTTGGAAATGG+AGG | 0.629089 | 1_1:-57438515 | Msa0030930:CDS |
| TCACACATAGAGAAGAAGAT+CGG | 0.630428 | 1_1:+57439079 | None:intergenic |
| GATGGGAAGATCCTGCAACG+TGG | 0.636522 | 1_1:-57438967 | Msa0030930:CDS |
| GCATCTTATGCTGGACCTGG+AGG | 0.645529 | 1_1:-57438666 | Msa0030930:CDS |
| AAGCTTTATTAAACTCCCGA+AGG | 0.659088 | 1_1:-57439102 | Msa0030930:CDS |
| GATGAGTATTTGCATAACCA+TGG | 0.669872 | 1_1:+57441979 | None:intergenic |
| ATTTGTACCCTAAAGCAGCA+AGG | 0.672262 | 1_1:+57440045 | None:intergenic |
| AGGGTAGCTTACCCCATGGG+AGG | 0.673038 | 1_1:+57441754 | None:intergenic |
| TGATGCAAGAGATTTATGGG+AGG | 0.716729 | 1_1:-57437753 | Msa0030930:intron |
| CTAGTATATATATAGCACCA+TGG | 0.723625 | 1_1:-57441996 | Msa0030930:five_prime_UTR |
| ATGGGCACGATATTCCTCTG+TGG | 0.732691 | 1_1:+57438487 | None:intergenic |
| AAATGGAGGCATGACCACAG+AGG | 0.748734 | 1_1:-57438501 | Msa0030930:CDS |
| TTGGACGTACTCCTCCCATG+GGG | 0.779061 | 1_1:-57441765 | Msa0030930:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGAAACTAAAAAAAAAT+TGG | + | chr1_1:57437769-57437788 | None:intergenic | 10.0% |
| !!! | TAACTTTTTAAAAAAAGAAA+AGG | - | chr1_1:57438262-57438281 | Msa0030930:intron | 10.0% |
| !! | TATAATTTGAAAAAATGAAT+GGG | + | chr1_1:57438709-57438728 | None:intergenic | 10.0% |
| !!! | AAATTATGTTTTTTTATTAG+TGG | + | chr1_1:57438843-57438862 | None:intergenic | 10.0% |
| !!! | AGGTTAATTTTATTTTAAAA+GGG | + | chr1_1:57438886-57438905 | None:intergenic | 10.0% |
| !!! | AAGGTTAATTTTATTTTAAA+AGG | + | chr1_1:57438887-57438906 | None:intergenic | 10.0% |
| !! | TATATAAATTGAAAATTCTA+AGG | + | chr1_1:57438906-57438925 | None:intergenic | 10.0% |
| !!! | ATAAAATTGGTTTTTTATTA+AGG | - | chr1_1:57439017-57439036 | Msa0030930:intron | 10.0% |
| !!! | AATTATTCTTTATTCTTTTA+TGG | - | chr1_1:57439487-57439506 | Msa0030930:intron | 10.0% |
| !! | AAGAAATTAAACAAATAAAT+GGG | + | chr1_1:57439661-57439680 | None:intergenic | 10.0% |
| !! | AAACATTGAAATATAAAAAT+AGG | + | chr1_1:57440693-57440712 | None:intergenic | 10.0% |
| !!! | ACTTTTATTGTTATTCAAAA+TGG | + | chr1_1:57437326-57437345 | None:intergenic | 15.0% |
| !!! | AATGTTTTAAGAAACAAAAT+CGG | - | chr1_1:57437824-57437843 | Msa0030930:CDS | 15.0% |
| !! | TATTATAATTTAAATCTACG+TGG | - | chr1_1:57437955-57437974 | Msa0030930:intron | 15.0% |
| !!! | TTTTTCATGAAAATAATTTG+AGG | + | chr1_1:57438319-57438338 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGCAAAGAAATA+TGG | - | chr1_1:57438666-57438685 | Msa0030930:CDS | 15.0% |
| !! | CTATAATTTGAAAAAATGAA+TGG | + | chr1_1:57438710-57438729 | None:intergenic | 15.0% |
| !!! | AAAAAACCAATTTTATCATT+CGG | + | chr1_1:57439013-57439032 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTAGATGATTGT+TGG | - | chr1_1:57439574-57439593 | Msa0030930:CDS | 15.0% |
| !!! | TTTTTTTTTAGATGATTGTT+GGG | - | chr1_1:57439575-57439594 | Msa0030930:CDS | 15.0% |
| !! | AGAAATTAAACAAATAAATG+GGG | + | chr1_1:57439660-57439679 | None:intergenic | 15.0% |
| !! | GAAGAAATTAAACAAATAAA+TGG | + | chr1_1:57439662-57439681 | None:intergenic | 15.0% |
| !! | TATATCATATATATAATCCT+AGG | - | chr1_1:57440135-57440154 | Msa0030930:intron | 15.0% |
| !! | TATGATAATTGTGAAAATAA+CGG | - | chr1_1:57440210-57440229 | Msa0030930:CDS | 15.0% |
| !!! | TTAATTCTTTTCTAAAATGA+AGG | - | chr1_1:57440476-57440495 | Msa0030930:intron | 15.0% |
| !!! | TAATTCTTTTCTAAAATGAA+GGG | - | chr1_1:57440477-57440496 | Msa0030930:intron | 15.0% |
| !! | TTGAAATATAAAAATAGGAA+AGG | + | chr1_1:57440688-57440707 | None:intergenic | 15.0% |
| !! | TCAAACAGAATAAAATATAA+AGG | + | chr1_1:57441376-57441395 | None:intergenic | 15.0% |
| !! | GAAGTATGAAAAAAAAAATT+AGG | + | chr1_1:57441427-57441446 | None:intergenic | 15.0% |
| !! | AATAACAATAAAAGTCACAT+AGG | - | chr1_1:57437331-57437350 | Msa0030930:three_prime_UTR | 20.0% |
| !! | TGAAAAATAGATAAGAATGA+GGG | + | chr1_1:57437735-57437754 | None:intergenic | 20.0% |
| !! | ATGAAAAATAGATAAGAATG+AGG | + | chr1_1:57437736-57437755 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAGAAACAAAATC+GGG | - | chr1_1:57437825-57437844 | Msa0030930:CDS | 20.0% |
| !! | TATCATTACTCCTATAATTT+AGG | + | chr1_1:57438133-57438152 | None:intergenic | 20.0% |
| !! | AATTATAGGAGTAATGATAA+TGG | - | chr1_1:57438134-57438153 | Msa0030930:intron | 20.0% |
| !!! | AATTATTTTCATGAAAAACG+AGG | - | chr1_1:57438321-57438340 | Msa0030930:CDS | 20.0% |
| !!! | AGAATTTTTCAAGAAATAGT+TGG | - | chr1_1:57438462-57438481 | Msa0030930:intron | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | - | chr1_1:57438476-57438495 | Msa0030930:CDS | 20.0% |
| !! | GTCAAAGTGATTTATAATTT+AGG | - | chr1_1:57438931-57438950 | Msa0030930:CDS | 20.0% |
| !! | AAAGTGATTTATAATTTAGG+TGG | - | chr1_1:57438934-57438953 | Msa0030930:CDS | 20.0% |
| !!! | TTTTTTATTAAGGAGAATGA+TGG | - | chr1_1:57439027-57439046 | Msa0030930:intron | 20.0% |
| !!! | TACTTTTCTTTTTTGTTGAA+AGG | - | chr1_1:57439074-57439093 | Msa0030930:intron | 20.0% |
| !! | ATCTAAGTTGTAAACATAAT+AGG | + | chr1_1:57439335-57439354 | None:intergenic | 20.0% |
| !! | GGGTACAAATATATTAATTT+AGG | - | chr1_1:57439435-57439454 | Msa0030930:CDS | 20.0% |
| !! | GAAATTAAACAAATAAATGG+GGG | + | chr1_1:57439659-57439678 | None:intergenic | 20.0% |
| !! | CTTCGTATGTATTAAAAATT+AGG | - | chr1_1:57440326-57440345 | Msa0030930:intron | 20.0% |
| !!! | AATTCTTTTCTAAAATGAAG+GGG | - | chr1_1:57440478-57440497 | Msa0030930:intron | 20.0% |
| !!! | TAGATTTTGCTATAAATGTA+AGG | + | chr1_1:57440883-57440902 | None:intergenic | 20.0% |
| !! | TTATAGCAAAATCTAGTATT+AGG | - | chr1_1:57440888-57440907 | Msa0030930:intron | 20.0% |
| !! | TTATATGTGTAACTGTTATT+TGG | - | chr1_1:57440914-57440933 | Msa0030930:intron | 20.0% |
| !!! | CTATTTGTATTGGTTTAAAT+AGG | - | chr1_1:57441098-57441117 | Msa0030930:intron | 20.0% |
| !!! | TAAAAATCATATGCTTCTTT+TGG | - | chr1_1:57441274-57441293 | Msa0030930:intron | 20.0% |
| !!! | AGAGTTTTTTACAACTTATA+AGG | - | chr1_1:57441399-57441418 | Msa0030930:intron | 20.0% |
| !! | TCATACTTCAATTAAAAAGA+TGG | - | chr1_1:57441438-57441457 | Msa0030930:intron | 20.0% |
| !! | GACAATTGATGATATAGATT+GGG | - | chr1_1:57437279-57437298 | Msa0030930:three_prime_UTR | 25.0% |
| !! | TTCAAAATGGAATTCAGTTT+TGG | + | chr1_1:57437313-57437332 | None:intergenic | 25.0% |
| ! | ATTTGATGAATGGATGATAT+GGG | + | chr1_1:57437416-57437435 | None:intergenic | 25.0% |
| ! | AATTTGATGAATGGATGATA+TGG | + | chr1_1:57437417-57437436 | None:intergenic | 25.0% |
| ! | CAATATTTATGAACACTACA+AGG | + | chr1_1:57437577-57437596 | None:intergenic | 25.0% |
| ! | TAGACTTACTATCAATTCAA+TGG | + | chr1_1:57437985-57438004 | None:intergenic | 25.0% |
| !! | ATTGAATTGATAGTAAGTCT+AGG | - | chr1_1:57437984-57438003 | Msa0030930:intron | 25.0% |
| !! | ACTTTCCTAAAGATTTCTTT+TGG | - | chr1_1:57438084-57438103 | Msa0030930:intron | 25.0% |
| !!! | ATGGAGTACTGTTTTTTTTA+AGG | + | chr1_1:57438110-57438129 | None:intergenic | 25.0% |
| ! | ATTACTCCTATAATTTAGGA+TGG | + | chr1_1:57438129-57438148 | None:intergenic | 25.0% |
| !! | TTGATTTTGTCCGTTAATAT+TGG | - | chr1_1:57438170-57438189 | Msa0030930:intron | 25.0% |
| ! | AAAAGAAAAGGAAAATTGCA+TGG | - | chr1_1:57438274-57438293 | Msa0030930:intron | 25.0% |
| ! | TTTGAGGAACAAATGTTATA+TGG | + | chr1_1:57438303-57438322 | None:intergenic | 25.0% |
| !!! | GTTTTAACATTTTTTTCGCT+TGG | + | chr1_1:57438347-57438366 | None:intergenic | 25.0% |
| !!! | GTTTTTTTATTAGTGGTATG+AGG | + | chr1_1:57438836-57438855 | None:intergenic | 25.0% |
| ! | AGATAGTATAAGATAAGATG+TGG | - | chr1_1:57438957-57438976 | Msa0030930:CDS | 25.0% |
| ! | TTATACATATGATCATCAGA+TGG | - | chr1_1:57439229-57439248 | Msa0030930:intron | 25.0% |
| ! | AAGTTGTAAACATAATAGGT+CGG | + | chr1_1:57439331-57439350 | None:intergenic | 25.0% |
| ! | TCAAAATCATATCATTGACA+TGG | + | chr1_1:57439555-57439574 | None:intergenic | 25.0% |
| !!! | CAACAATCATAATTTTTCAG+AGG | + | chr1_1:57439767-57439786 | None:intergenic | 25.0% |
| ! | TTAACGCATTAAATTGTACT+TGG | - | chr1_1:57439925-57439944 | Msa0030930:intron | 25.0% |
| !! | TAAATATTGGTTAACAACCT+AGG | + | chr1_1:57440155-57440174 | None:intergenic | 25.0% |
| ! | TTTAATAAAGCTTCACTCAT+TGG | + | chr1_1:57440358-57440377 | None:intergenic | 25.0% |
| ! | ATATAGAAGATAATTGGAAG+AGG | - | chr1_1:57440560-57440579 | Msa0030930:intron | 25.0% |
| ! | GTTAAAAGAGACATTGTAAA+AGG | + | chr1_1:57440625-57440644 | None:intergenic | 25.0% |
| !! | CTCTTTTAACAACATAATTG+AGG | - | chr1_1:57440635-57440654 | Msa0030930:intron | 25.0% |
| !! | TGTCGTTTAACTATTTGTAT+TGG | - | chr1_1:57441088-57441107 | Msa0030930:intron | 25.0% |
| ! | ATATTACATCCAACTAATAG+AGG | + | chr1_1:57441126-57441145 | None:intergenic | 25.0% |
| ! | TTCAATTAAAAAGATGGATC+TGG | - | chr1_1:57441444-57441463 | Msa0030930:intron | 25.0% |
| !!! | TTGCAATAGTTTCCATTTTT+TGG | + | chr1_1:57441475-57441494 | None:intergenic | 25.0% |
| ! | CACAACTTAATATAAAGCTA+CGG | - | chr1_1:57441566-57441585 | Msa0030930:intron | 25.0% |
| !!! | TGCTACTTTGTTTTTACTAA+GGG | + | chr1_1:57441611-57441630 | None:intergenic | 25.0% |
| ! | TTTCACATAATCAAAACCTT+AGG | + | chr1_1:57441794-57441813 | None:intergenic | 25.0% |
| ! | GGACAATTGATGATATAGAT+TGG | - | chr1_1:57437278-57437297 | Msa0030930:three_prime_UTR | 30.0% |
| ! | AATTGATGATATAGATTGGG+TGG | - | chr1_1:57437282-57437301 | Msa0030930:three_prime_UTR | 30.0% |
| TGCAAATGCAATTTGATGAA+TGG | + | chr1_1:57437426-57437445 | None:intergenic | 30.0% | |
| TTCATCAAATTGCATTTGCA+TGG | - | chr1_1:57437426-57437445 | Msa0030930:three_prime_UTR | 30.0% | |
| TATATACTAGTGTTTGCTTC+AGG | + | chr1_1:57437461-57437480 | None:intergenic | 30.0% | |
| CTAGTATATATATAGCACCA+TGG | - | chr1_1:57437471-57437490 | Msa0030930:three_prime_UTR | 30.0% | |
| AAGAGTTATATGCTGCAAAA+TGG | - | chr1_1:57437677-57437696 | Msa0030930:intron | 30.0% | |
| TTAAGAAACAAAATCGGGTA+TGG | - | chr1_1:57437830-57437849 | Msa0030930:CDS | 30.0% | |
| TAGTACGTAATTTATGTGCA+AGG | - | chr1_1:57437858-57437877 | Msa0030930:CDS | 30.0% | |
| TAAGGCCAAAAGAAATCTTT+AGG | + | chr1_1:57438092-57438111 | None:intergenic | 30.0% | |
| AGTACTCCATCCTAAATTAT+AGG | - | chr1_1:57438120-57438139 | Msa0030930:intron | 30.0% | |
| ! | TATTAACGGACAAAATCAAG+TGG | + | chr1_1:57438169-57438188 | None:intergenic | 30.0% |
| ! | TTTGTCCGTTAATATTGGTT+TGG | - | chr1_1:57438175-57438194 | Msa0030930:intron | 30.0% |
| !! | TTGTCCGTTAATATTGGTTT+GGG | - | chr1_1:57438176-57438195 | Msa0030930:intron | 30.0% |
| AGATCCCAAACCAATATTAA+CGG | + | chr1_1:57438183-57438202 | None:intergenic | 30.0% | |
| !! | TTAATATTGGTTTGGGATCT+TGG | - | chr1_1:57438183-57438202 | Msa0030930:intron | 30.0% |
| GTCTCAAATTTGATTCTTCT+CGG | - | chr1_1:57438217-57438236 | Msa0030930:intron | 30.0% | |
| GTGTGAAAGAAAAAGAAAGA+TGG | + | chr1_1:57438771-57438790 | None:intergenic | 30.0% | |
| GATGTTCACAAAAGCAAAAT+GGG | + | chr1_1:57438986-57439005 | None:intergenic | 30.0% | |
| AGATGTTCACAAAAGCAAAA+TGG | + | chr1_1:57438987-57439006 | None:intergenic | 30.0% | |
| TCTTGACCGAATGATAAAAT+TGG | - | chr1_1:57439004-57439023 | Msa0030930:intron | 30.0% | |
| AAGTATATATCTCCTCACTA+TGG | + | chr1_1:57439059-57439078 | None:intergenic | 30.0% | |
| CATTGATATCACAACCAAAA+TGG | + | chr1_1:57439266-57439285 | None:intergenic | 30.0% | |
| ! | TGATAATGATACCTGTATCT+CGG | + | chr1_1:57439299-57439318 | None:intergenic | 30.0% |
| AGTTGTAAACATAATAGGTC+GGG | + | chr1_1:57439330-57439349 | None:intergenic | 30.0% | |
| ATATCATTGACATGGTAATC+TGG | + | chr1_1:57439547-57439566 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGATGATTGTTGGG+CGG | - | chr1_1:57439578-57439597 | Msa0030930:CDS | 30.0% |
| ! | CTTTTCCTTCGTTGTTTAAA+AGG | - | chr1_1:57439690-57439709 | Msa0030930:intron | 30.0% |
| ! | CTATACCTTTTAAACAACGA+AGG | + | chr1_1:57439698-57439717 | None:intergenic | 30.0% |
| ! | CTTCGTTGTTTAAAAGGTAT+AGG | - | chr1_1:57439696-57439715 | Msa0030930:intron | 30.0% |
| ! | TGGTTTGTGACAATGATATT+AGG | - | chr1_1:57439796-57439815 | Msa0030930:intron | 30.0% |
| GGTTTGTGACAATGATATTA+GGG | - | chr1_1:57439797-57439816 | Msa0030930:intron | 30.0% | |
| GTTTGTGACAATGATATTAG+GGG | - | chr1_1:57439798-57439817 | Msa0030930:intron | 30.0% | |
| ACAATGATATTAGGGGAATA+TGG | - | chr1_1:57439805-57439824 | Msa0030930:intron | 30.0% | |
| ! | CTCTAGCTCATTATATTCAT+AGG | - | chr1_1:57439864-57439883 | Msa0030930:intron | 30.0% |
| GCTCATTATATTCATAGGAA+AGG | - | chr1_1:57439869-57439888 | Msa0030930:CDS | 30.0% | |
| CAATTTAATGCGTTAATACC+CGG | + | chr1_1:57439921-57439940 | None:intergenic | 30.0% | |
| !! | CGCGAAAGGTATTTAATATA+TGG | - | chr1_1:57440243-57440262 | Msa0030930:intron | 30.0% |
| !!! | TTTTCTAAAATGAAGGGGAT+GGG | - | chr1_1:57440483-57440502 | Msa0030930:intron | 30.0% |
| AAATAGGAAAGGAATTCTTG+AGG | + | chr1_1:57440677-57440696 | None:intergenic | 30.0% | |
| TTATAGATGCAAACGACAAA+TGG | - | chr1_1:57440778-57440797 | Msa0030930:intron | 30.0% | |
| TATAGATGCAAACGACAAAT+GGG | - | chr1_1:57440779-57440798 | Msa0030930:intron | 30.0% | |
| TGGATGTAATATTCAAGCAA+TGG | - | chr1_1:57441134-57441153 | Msa0030930:intron | 30.0% | |
| GTTGCTTATCAATTCATATG+TGG | + | chr1_1:57441166-57441185 | None:intergenic | 30.0% | |
| GAAGTTATTGCAGTAAATCA+AGG | - | chr1_1:57441189-57441208 | Msa0030930:intron | 30.0% | |
| GAAAAGCAACAATGATTTAG+AGG | - | chr1_1:57441333-57441352 | Msa0030930:intron | 30.0% | |
| GCATGTATATAGTACAGAAA+TGG | + | chr1_1:57441512-57441531 | None:intergenic | 30.0% | |
| !!! | CTACTTTGTTTTTACTAAGG+GGG | + | chr1_1:57441609-57441628 | None:intergenic | 30.0% |
| !!! | GCTACTTTGTTTTTACTAAG+GGG | + | chr1_1:57441610-57441629 | None:intergenic | 30.0% |
| !!! | CTGCTACTTTGTTTTTACTA+AGG | + | chr1_1:57441612-57441631 | None:intergenic | 30.0% |
| TAGTAAAAACAAAGTAGCAG+TGG | - | chr1_1:57441612-57441631 | Msa0030930:intron | 30.0% | |
| ! | TAGTTGATGCAAGAGATTTA+TGG | - | chr1_1:57441710-57441729 | Msa0030930:intron | 30.0% |
| ! | AGTTGATGCAAGAGATTTAT+GGG | - | chr1_1:57441711-57441730 | Msa0030930:intron | 30.0% |
| ! | CAAAGTCATTTAAGTTCCTA+AGG | - | chr1_1:57441775-57441794 | Msa0030930:CDS | 30.0% |
| ! | ATCGAAGATTAACTCCTTTT+TGG | + | chr1_1:57441907-57441926 | None:intergenic | 30.0% |
| ATTGCATTTGCATGGATCTT+TGG | - | chr1_1:57437434-57437453 | Msa0030930:three_prime_UTR | 35.0% | |
| GATGAGTATTTGCATAACCA+TGG | + | chr1_1:57437491-57437510 | None:intergenic | 35.0% | |
| TTGCACTTTCAATGAACTTG+AGG | + | chr1_1:57437523-57437542 | None:intergenic | 35.0% | |
| ! | CAAGTTCATTGAAAGTGCAA+TGG | - | chr1_1:57437523-57437542 | Msa0030930:three_prime_UTR | 35.0% |
| ! | TATATGCTGCAAAATGGACT+TGG | - | chr1_1:57437683-57437702 | Msa0030930:intron | 35.0% |
| TATAGTACTCCATCCTAATG+TGG | - | chr1_1:57438055-57438074 | Msa0030930:intron | 35.0% | |
| ! | AGTATTTTGCCACATTAGGA+TGG | + | chr1_1:57438067-57438086 | None:intergenic | 35.0% |
| !!! | GGAAAGTATTTTGCCACATT+AGG | + | chr1_1:57438071-57438090 | None:intergenic | 35.0% |
| AAAAATGTATCCCGACCATA+TGG | - | chr1_1:57438372-57438391 | Msa0030930:intron | 35.0% | |
| AAAGCCACCATATTTCCATA+TGG | + | chr1_1:57438390-57438409 | None:intergenic | 35.0% | |
| TGATGGAATTATCCATAGTG+AGG | - | chr1_1:57439044-57439063 | Msa0030930:intron | 35.0% | |
| GAAAGTTTAATCCGAGATAC+AGG | - | chr1_1:57439285-57439304 | Msa0030930:intron | 35.0% | |
| GTTGTAAACATAATAGGTCG+GGG | + | chr1_1:57439329-57439348 | None:intergenic | 35.0% | |
| TATGATTGTTGACACCTGAT+TGG | - | chr1_1:57439776-57439795 | Msa0030930:intron | 35.0% | |
| ATCATTGTCACAAACCAATC+AGG | + | chr1_1:57439793-57439812 | None:intergenic | 35.0% | |
| ATGCCAAAACATTTGCTTCT+TGG | - | chr1_1:57440058-57440077 | Msa0030930:CDS | 35.0% | |
| TGCCAAAACATTTGCTTCTT+GGG | - | chr1_1:57440059-57440078 | Msa0030930:CDS | 35.0% | |
| ! | TACCCAAGAAGCAAATGTTT+TGG | + | chr1_1:57440064-57440083 | None:intergenic | 35.0% |
| CATACGAAGCATGTAAGTAT+TGG | + | chr1_1:57440315-57440334 | None:intergenic | 35.0% | |
| AATAAAGCTTCACTCATTGG+TGG | + | chr1_1:57440355-57440374 | None:intergenic | 35.0% | |
| !! | AAGCTTTATTAAACTCCCGA+AGG | - | chr1_1:57440365-57440384 | Msa0030930:intron | 35.0% |
| TCACACATAGAGAAGAAGAT+CGG | + | chr1_1:57440391-57440410 | None:intergenic | 35.0% | |
| TCTTCTTCTCTATGTGTGAA+TGG | - | chr1_1:57440392-57440411 | Msa0030930:intron | 35.0% | |
| ! | ATGGTGAGTTGAATTGATCA+TGG | - | chr1_1:57440411-57440430 | Msa0030930:intron | 35.0% |
| !!! | CTTTTCTAAAATGAAGGGGA+TGG | - | chr1_1:57440482-57440501 | Msa0030930:intron | 35.0% |
| CAGGCGATATAGAAGATAAT+TGG | - | chr1_1:57440554-57440573 | Msa0030930:intron | 35.0% | |
| CTATAATAGAAGTCATGCTG+AGG | + | chr1_1:57440764-57440783 | None:intergenic | 35.0% | |
| TAATGCCCAAATGCTGAAAT+GGG | + | chr1_1:57441001-57441020 | None:intergenic | 35.0% | |
| AAATAGGCTCCTCTATTAGT+TGG | - | chr1_1:57441114-57441133 | Msa0030930:intron | 35.0% | |
| TTTGGTCATGCAGATAAACT+TGG | - | chr1_1:57441292-57441311 | Msa0030930:intron | 35.0% | |
| ! | GATCTGGAACAACCAAAAAA+TGG | - | chr1_1:57441460-57441479 | Msa0030930:intron | 35.0% |
| TAATATAAAGCTACGGTGAC+AGG | - | chr1_1:57441573-57441592 | Msa0030930:intron | 35.0% | |
| !! | CAACTATAGTTTCTGGTTCA+AGG | + | chr1_1:57441696-57441715 | None:intergenic | 35.0% |
| CTTGCATCAACTATAGTTTC+TGG | + | chr1_1:57441703-57441722 | None:intergenic | 35.0% | |
| !! | CTCAACACAATCATTGGTTT+CGG | - | chr1_1:57441828-57441847 | Msa0030930:CDS | 35.0% |
| !! | TCAACACAATCATTGGTTTC+GGG | - | chr1_1:57441829-57441848 | Msa0030930:CDS | 35.0% |
| TGTATGTTCTGACACCAAAA+AGG | - | chr1_1:57441890-57441909 | Msa0030930:CDS | 35.0% | |
| ! | GTTTTTGACACGTACTGTAT+TGG | - | chr1_1:57441957-57441976 | Msa0030930:five_prime_UTR | 35.0% |
| TTTATTTGTCGCTCCTCTTT+AGG | + | chr1_1:57442007-57442026 | None:intergenic | 35.0% | |
| TAAAGAGGAGCGACAAATAA+AGG | - | chr1_1:57442006-57442025 | Msa0030930:five_prime_UTR | 35.0% | |
| CCTATTGCAGTAAAATCAAG+TGG | + | chr1_1:57442130-57442149 | None:intergenic | 35.0% | |
| ! | CCACTTGATTTTACTGCAAT+AGG | - | chr1_1:57442127-57442146 | Msa0030930:five_prime_UTR | 35.0% |
| AATGGATGATATGGGTGAAC+AGG | + | chr1_1:57437408-57437427 | None:intergenic | 40.0% | |
| AAGTGCAATGGCAAAGATGA+TGG | - | chr1_1:57437535-57437554 | Msa0030930:three_prime_UTR | 40.0% | |
| TCTACAGCTGCTCGTTTATT+AGG | - | chr1_1:57437611-57437630 | Msa0030930:CDS | 40.0% | |
| !! | CTTCTCTAGAGTGGATACAT+TGG | + | chr1_1:57437651-57437670 | None:intergenic | 40.0% |
| ! | TGTATCCACTCTAGAGAAGA+AGG | - | chr1_1:57437652-57437671 | Msa0030930:intron | 40.0% |
| ! | CTTAACCTTCTTCTCTAGAG+TGG | + | chr1_1:57437660-57437679 | None:intergenic | 40.0% |
| TAAATAAGTGACCGTTCTCG+TGG | - | chr1_1:57438007-57438026 | Msa0030930:intron | 40.0% | |
| ATCCCGACCATATGGAAATA+TGG | - | chr1_1:57438380-57438399 | Msa0030930:intron | 40.0% | |
| CACCATATTTCCATATGGTC+GGG | + | chr1_1:57438385-57438404 | None:intergenic | 40.0% | |
| CCACCATATTTCCATATGGT+CGG | + | chr1_1:57438386-57438405 | None:intergenic | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr1_1:57438515-57438534 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr1_1:57438538-57438557 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr1_1:57438541-57438560 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | - | chr1_1:57438549-57438568 | Msa0030930:intron | 40.0% | |
| TGATCATCAGATGGAATAGC+TGG | - | chr1_1:57439238-57439257 | Msa0030930:intron | 40.0% | |
| ! | TGGAATAGCTGGAACCATTT+TGG | - | chr1_1:57439249-57439268 | Msa0030930:CDS | 40.0% |
| TATTATTTCAGCCGACGCAA+TGG | - | chr1_1:57439389-57439408 | Msa0030930:intron | 40.0% | |
| ATTTGTACCCTAAAGCAGCA+AGG | + | chr1_1:57439425-57439444 | None:intergenic | 40.0% | |
| GGAACTTAATCGAGACTCAA+AGG | - | chr1_1:57439599-57439618 | Msa0030930:CDS | 40.0% | |
| AACGTTTCCTTCAGGAATCA+AGG | - | chr1_1:57439841-57439860 | Msa0030930:intron | 40.0% | |
| TCATAGGAAAGGCTTGAAGT+TGG | - | chr1_1:57439880-57439899 | Msa0030930:CDS | 40.0% | |
| CATAGGAAAGGCTTGAAGTT+GGG | - | chr1_1:57439881-57439900 | Msa0030930:CDS | 40.0% | |
| TTGGGAGTTTATTCAGATGC+CGG | - | chr1_1:57439899-57439918 | Msa0030930:intron | 40.0% | |
| ACTTGTAGTAAACGTATGCC+TGG | - | chr1_1:57440012-57440031 | Msa0030930:intron | 40.0% | |
| TAAACGTATGCCTGGATCAT+TGG | - | chr1_1:57440020-57440039 | Msa0030930:intron | 40.0% | |
| AAACGTATGCCTGGATCATT+GGG | - | chr1_1:57440021-57440040 | Msa0030930:intron | 40.0% | |
| ATTTCATGTCCCAATGATCC+AGG | + | chr1_1:57440033-57440052 | None:intergenic | 40.0% | |
| ! | CCAACTATTTCCCACACTTT+TGG | + | chr1_1:57440527-57440546 | None:intergenic | 40.0% |
| ! | CCAAAAGTGTGGGAAATAGT+TGG | - | chr1_1:57440524-57440543 | Msa0030930:intron | 40.0% |
| GGAAATAGTTGGAGAACAAC+AGG | - | chr1_1:57440535-57440554 | Msa0030930:intron | 40.0% | |
| TAATTACCATTCCATCCTCC+AGG | + | chr1_1:57440819-57440838 | None:intergenic | 40.0% | |
| TTTCCAACTTCAAGCATGTC+AGG | + | chr1_1:57440949-57440968 | None:intergenic | 40.0% | |
| GACATGCTTGAAGTTGGAAA+TGG | - | chr1_1:57440949-57440968 | Msa0030930:intron | 40.0% | |
| ATGCTTGAAGTTGGAAATGG+AGG | - | chr1_1:57440952-57440971 | Msa0030930:intron | 40.0% | |
| CTAATGCCCAAATGCTGAAA+TGG | + | chr1_1:57441002-57441021 | None:intergenic | 40.0% | |
| GCAGATAAACTTGGAGTTCA+AGG | - | chr1_1:57441301-57441320 | Msa0030930:intron | 40.0% | |
| TGCACGTACACATTATGCTA+TGG | - | chr1_1:57441535-57441554 | Msa0030930:intron | 40.0% | |
| ! | ACAAAGTAGCAGTGGTCTTA+TGG | - | chr1_1:57441620-57441639 | Msa0030930:intron | 40.0% |
| TGATGCAAGAGATTTATGGG+AGG | - | chr1_1:57441714-57441733 | Msa0030930:intron | 40.0% | |
| GTAGCACTCAACACAATCAT+TGG | - | chr1_1:57441822-57441841 | Msa0030930:CDS | 40.0% | |
| CAAACCATTCACCCATTCAT+TGG | - | chr1_1:57441980-57441999 | Msa0030930:five_prime_UTR | 40.0% | |
| !! | CCTCTTTAGGACCAATGAAT+GGG | + | chr1_1:57441994-57442013 | None:intergenic | 40.0% |
| !! | TCCTCTTTAGGACCAATGAA+TGG | + | chr1_1:57441995-57442014 | None:intergenic | 40.0% |
| AAACGAGCAGCTGTAGATGA+TGG | + | chr1_1:57437608-57437627 | None:intergenic | 45.0% | |
| CCGACCATATGGAAATATGG+TGG | - | chr1_1:57438383-57438402 | Msa0030930:intron | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr1_1:57438521-57438540 | None:intergenic | 45.0% |
| TTAGGGGAATATGGTTCCCA+AGG | - | chr1_1:57439814-57439833 | Msa0030930:intron | 45.0% | |
| GAAGGAAACGTTGAAGCCTT+GGG | + | chr1_1:57439833-57439852 | None:intergenic | 45.0% | |
| TGAAGGAAACGTTGAAGCCT+TGG | + | chr1_1:57439834-57439853 | None:intergenic | 45.0% | |
| AAGGCTTCAACGTTTCCTTC+AGG | - | chr1_1:57439833-57439852 | Msa0030930:intron | 45.0% | |
| TGGGAGTTTATTCAGATGCC+GGG | - | chr1_1:57439900-57439919 | Msa0030930:intron | 45.0% | |
| TAGAGAAGAAGATCGGCCTT+CGG | + | chr1_1:57440384-57440403 | None:intergenic | 45.0% | |
| GACAAATGGGCATCTTATGC+TGG | - | chr1_1:57440792-57440811 | Msa0030930:intron | 45.0% | |
| GATCCTGACATGCTTGAAGT+TGG | - | chr1_1:57440943-57440962 | Msa0030930:intron | 45.0% | |
| ATCGTGCCCATTTCAGCATT+TGG | - | chr1_1:57440992-57441011 | Msa0030930:intron | 45.0% | |
| TCGTGCCCATTTCAGCATTT+GGG | - | chr1_1:57440993-57441012 | Msa0030930:intron | 45.0% | |
| CAGCATTTGGGCATTAGCTA+AGG | - | chr1_1:57441005-57441024 | Msa0030930:intron | 45.0% | |
| TAAAGCTACGGTGACAGGTA+TGG | - | chr1_1:57441578-57441597 | Msa0030930:intron | 45.0% | |
| AAAGCTACGGTGACAGGTAT+GGG | - | chr1_1:57441579-57441598 | Msa0030930:intron | 45.0% | |
| ATGCAACAGTTACTGCGTCT+TGG | - | chr1_1:57441659-57441678 | Msa0030930:intron | 45.0% | |
| AGGACCAATGAATGGGTGAA+TGG | + | chr1_1:57441987-57442006 | None:intergenic | 45.0% | |
| CCCATTCATTGGTCCTAAAG+AGG | - | chr1_1:57441991-57442010 | Msa0030930:five_prime_UTR | 45.0% | |
| ! | AAGCTCTAGCTAGCACAAGA+AGG | - | chr1_1:57442184-57442203 | Msa0030930:five_prime_UTR | 45.0% |
| !!! | TTTTTTCTTTTTTTTTTTTT+TGG | - | chr1_1:57438408-57438427 | Msa0030930:intron | 5.0% |
| !! | AGAAAAATTTAAATAAATAT+TGG | + | chr1_1:57440168-57440187 | None:intergenic | 5.0% |
| !!! | ATTTATTTAAATTTTTCTTT+AGG | - | chr1_1:57440170-57440189 | Msa0030930:intron | 5.0% |
| !!! | TTTATTTAAATTTTTCTTTA+GGG | - | chr1_1:57440171-57440190 | Msa0030930:intron | 5.0% |
| ATGAGGGTAGCTTACCCCAT+GGG | + | chr1_1:57437719-57437738 | None:intergenic | 50.0% | |
| AATGAGGGTAGCTTACCCCA+TGG | + | chr1_1:57437720-57437739 | None:intergenic | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr1_1:57438528-57438547 | Msa0030930:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr1_1:57438533-57438552 | None:intergenic | 50.0% | |
| !! | TCAACTGGCCTTGCTGCTTT+AGG | - | chr1_1:57439414-57439433 | Msa0030930:CDS | 50.0% |
| !! | CAACTGGCCTTGCTGCTTTA+GGG | - | chr1_1:57439415-57439434 | Msa0030930:CDS | 50.0% |
| GCTAGAGCCTTGATTCCTGA+AGG | + | chr1_1:57439851-57439870 | None:intergenic | 50.0% | |
| ACGGAATAAGCGTTCGCGAA+AGG | - | chr1_1:57440229-57440248 | Msa0030930:intron | 50.0% | |
| AGAGAAGAAGATCGGCCTTC+GGG | + | chr1_1:57440383-57440402 | None:intergenic | 50.0% | |
| ATGGGAAGATCCTGCAACGT+GGG | - | chr1_1:57440501-57440520 | Msa0030930:intron | 50.0% | |
| ! | AAATGGAGGCATGACCACAG+AGG | - | chr1_1:57440966-57440985 | Msa0030930:intron | 50.0% |
| ATGGGCACGATATTCCTCTG+TGG | + | chr1_1:57440983-57441002 | None:intergenic | 50.0% | |
| ACTGCGTCTTGGTCTGACAT+AGG | - | chr1_1:57441670-57441689 | Msa0030930:intron | 50.0% | |
| ACTTGGACGTACTCCTCCCA+TGG | - | chr1_1:57437700-57437719 | Msa0030930:intron | 55.0% | |
| CTTGGACGTACTCCTCCCAT+GGG | - | chr1_1:57437701-57437720 | Msa0030930:intron | 55.0% | |
| TTGGACGTACTCCTCCCATG+GGG | - | chr1_1:57437702-57437721 | Msa0030930:intron | 55.0% | |
| GGCTGACTGAGGGTGGAATT+TGG | - | chr1_1:57438028-57438047 | Msa0030930:intron | 55.0% | |
| GCCAGTTGACACCATTGCGT+CGG | + | chr1_1:57439403-57439422 | None:intergenic | 55.0% | |
| GATGGGAAGATCCTGCAACG+TGG | - | chr1_1:57440500-57440519 | Msa0030930:intron | 55.0% | |
| ! | ACACTTTTGGCCCACGTTGC+AGG | + | chr1_1:57440514-57440533 | None:intergenic | 55.0% |
| TGCAACGTGGGCCAAAAGTG+TGG | - | chr1_1:57440513-57440532 | Msa0030930:intron | 55.0% | |
| ! | GCAACGTGGGCCAAAAGTGT+GGG | - | chr1_1:57440514-57440533 | Msa0030930:intron | 55.0% |
| TGGGCATCTTATGCTGGACC+TGG | - | chr1_1:57440798-57440817 | Msa0030930:intron | 55.0% | |
| GCATCTTATGCTGGACCTGG+AGG | - | chr1_1:57440801-57440820 | Msa0030930:intron | 55.0% | |
| CTTATGCTGGACCTGGAGGA+TGG | - | chr1_1:57440805-57440824 | Msa0030930:intron | 55.0% | |
| AGGGTAGCTTACCCCATGGG+AGG | + | chr1_1:57437716-57437735 | None:intergenic | 60.0% | |
| ACCGTTCTCGTGGCTGACTG+AGG | - | chr1_1:57438017-57438036 | Msa0030930:intron | 60.0% | |
| CCCTCAGTCAGCCACGAGAA+CGG | + | chr1_1:57438021-57438040 | None:intergenic | 60.0% | |
| CCGTTCTCGTGGCTGACTGA+GGG | - | chr1_1:57438018-57438037 | Msa0030930:intron | 60.0% | |
| TTCTCGTGGCTGACTGAGGG+TGG | - | chr1_1:57438021-57438040 | Msa0030930:intron | 60.0% | |
| ! | GCCGACGCAATGGTGTCAAC+TGG | - | chr1_1:57439399-57439418 | Msa0030930:intron | 60.0% |
| GCTGGACCTGGAGGATGGAA+TGG | - | chr1_1:57440810-57440829 | Msa0030930:intron | 60.0% | |
| CTACGGTGACAGGTATGGGC+AGG | - | chr1_1:57441583-57441602 | Msa0030930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57437278 | 57442211 | 57437278 | ID=Msa0030930;Name=Msa0030930 |
| chr1_1 | mRNA | 57437278 | 57442211 | 57437278 | ID=Msa0030930-mRNA-1;Parent=Msa0030930;Name=Msa0030930-mRNA-1;_AED=0.17;_eAED=0.17;_QI=264|1|1|1|1|1|15|293|414 |
| chr1_1 | exon | 57437278 | 57437663 | 57437278 | ID=Msa0030930-mRNA-1:exon:17367;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57437754 | 57437894 | 57437754 | ID=Msa0030930-mRNA-1:exon:17366;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57438135 | 57438184 | 57438135 | ID=Msa0030930-mRNA-1:exon:17365;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57438279 | 57438369 | 57438279 | ID=Msa0030930-mRNA-1:exon:17364;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57438463 | 57438545 | 57438463 | ID=Msa0030930-mRNA-1:exon:17363;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57438658 | 57438722 | 57438658 | ID=Msa0030930-mRNA-1:exon:17362;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57438908 | 57438991 | 57438908 | ID=Msa0030930-mRNA-1:exon:17361;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57439076 | 57439141 | 57439076 | ID=Msa0030930-mRNA-1:exon:17360;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57439239 | 57439297 | 57439239 | ID=Msa0030930-mRNA-1:exon:17359;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57439409 | 57439484 | 57439409 | ID=Msa0030930-mRNA-1:exon:17358;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57439568 | 57439671 | 57439568 | ID=Msa0030930-mRNA-1:exon:17357;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57439869 | 57439903 | 57439869 | ID=Msa0030930-mRNA-1:exon:17356;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57440033 | 57440089 | 57440033 | ID=Msa0030930-mRNA-1:exon:17355;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57440183 | 57440241 | 57440183 | ID=Msa0030930-mRNA-1:exon:17354;Parent=Msa0030930-mRNA-1 |
| chr1_1 | exon | 57441766 | 57442211 | 57441766 | ID=Msa0030930-mRNA-1:exon:17353;Parent=Msa0030930-mRNA-1 |
| chr1_1 | five_prime_UTR | 57441948 | 57442211 | 57441948 | ID=Msa0030930-mRNA-1:five_prime_utr;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57441766 | 57441947 | 57441766 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57440183 | 57440241 | 57440183 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57440033 | 57440089 | 57440033 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57439869 | 57439903 | 57439869 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57439568 | 57439671 | 57439568 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57439409 | 57439484 | 57439409 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57439239 | 57439297 | 57439239 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57439076 | 57439141 | 57439076 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57438908 | 57438991 | 57438908 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57438658 | 57438722 | 57438658 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57438463 | 57438545 | 57438463 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57438279 | 57438369 | 57438279 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57438135 | 57438184 | 57438135 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57437754 | 57437894 | 57437754 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | CDS | 57437571 | 57437663 | 57437571 | ID=Msa0030930-mRNA-1:cds;Parent=Msa0030930-mRNA-1 |
| chr1_1 | three_prime_UTR | 57437278 | 57437570 | 57437278 | ID=Msa0030930-mRNA-1:three_prime_utr;Parent=Msa0030930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
