Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170940 | sp|P14749|AGAL_CYATE | 80.835 | 407 | 75 | 1 | 6 | 412 | 7 | 410 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170940 | A0A072VXV5 | 98.309 | 414 | 7 | 0 | 1 | 414 | 1 | 414 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030930 | Msa0170940 | 0.998971 | 4.181096e-284 | -8.615850e-47 |
| Msa0074550 | Msa0170940 | 0.923797 | 1.653229e-89 | -8.615850e-47 |
| Msa0125970 | Msa0170940 | 0.921408 | 3.715514e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170940 | MtrunA17_Chr1g0188751 | 98.309 | 414 | 7 | 0 | 1 | 414 | 1 | 414 | 0.0 | 840 |
| Msa0170940 | MtrunA17_Chr1g0188761 | 80.440 | 409 | 75 | 3 | 3 | 411 | 4 | 407 | 0.0 | 697 |
| Msa0170940 | MtrunA17_Chr6g0478231 | 77.062 | 388 | 88 | 1 | 24 | 411 | 33 | 419 | 0.0 | 636 |
| Msa0170940 | MtrunA17_Chr7g0245111 | 63.660 | 377 | 135 | 2 | 37 | 411 | 31 | 407 | 0.0 | 519 |
| Msa0170940 | MtrunA17_Chr7g0245121 | 64.151 | 371 | 131 | 2 | 43 | 411 | 36 | 406 | 0.0 | 515 |
| Msa0170940 | MtrunA17_Chr3g0128871 | 56.802 | 419 | 170 | 5 | 3 | 411 | 8 | 425 | 1.74e-175 | 496 |
| Msa0170940 | MtrunA17_Chr6g0485451 | 90.455 | 220 | 21 | 0 | 195 | 414 | 1 | 220 | 5.41e-145 | 411 |
| Msa0170940 | MtrunA17_Chr8g0381411 | 24.204 | 471 | 238 | 15 | 58 | 412 | 38 | 505 | 2.14e-25 | 108 |
| Msa0170940 | MtrunA17_Chr2g0327891 | 27.221 | 349 | 164 | 12 | 58 | 319 | 42 | 387 | 5.13e-22 | 98.6 |
| Msa0170940 | MtrunA17_Chr3g0123531 | 26.611 | 357 | 168 | 12 | 54 | 319 | 36 | 389 | 5.26e-22 | 98.6 |
| Msa0170940 | MtrunA17_Chr8g0381441 | 26.000 | 350 | 169 | 11 | 58 | 320 | 49 | 395 | 1.27e-21 | 95.9 |
| Msa0170940 | MtrunA17_Chr8g0381461 | 26.039 | 361 | 175 | 13 | 46 | 320 | 29 | 383 | 3.75e-20 | 92.8 |
| Msa0170940 | MtrunA17_Chr8g0381451 | 26.243 | 362 | 174 | 13 | 46 | 320 | 29 | 384 | 4.37e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170940 | AT5G08370.1 | 69.388 | 392 | 119 | 1 | 24 | 414 | 5 | 396 | 0.0 | 588 |
| Msa0170940 | AT5G08370.2 | 72.951 | 366 | 99 | 0 | 49 | 414 | 5 | 370 | 0.0 | 585 |
| Msa0170940 | AT5G08380.1 | 59.124 | 411 | 160 | 4 | 3 | 411 | 4 | 408 | 0.0 | 511 |
| Msa0170940 | AT3G56310.1 | 58.810 | 420 | 160 | 7 | 4 | 412 | 13 | 430 | 6.25e-176 | 498 |
| Msa0170940 | AT3G56310.2 | 55.238 | 420 | 151 | 8 | 4 | 412 | 13 | 406 | 1.37e-157 | 451 |
| Msa0170940 | AT5G08380.2 | 60.063 | 318 | 122 | 2 | 3 | 320 | 4 | 316 | 1.53e-143 | 411 |
| Msa0170940 | AT3G26380.2 | 25.788 | 349 | 169 | 12 | 58 | 319 | 42 | 387 | 3.91e-22 | 98.6 |
| Msa0170940 | AT3G26380.1 | 25.788 | 349 | 169 | 12 | 58 | 319 | 42 | 387 | 8.76e-22 | 98.2 |
Find 130 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTGGCCTTGCTGCTTT+AGG | 0.151894 | 1_4:-55416953 | Msa0170940:CDS |
| GGGTACAAATATATTAATTT+AGG | 0.200247 | 1_4:-55416932 | Msa0170940:intron |
| TCTACAGCTGCTCGTTTATT+AGG | 0.206786 | 1_4:-55418754 | Msa0170940:CDS |
| CTTGCATCAACTATAGTTTC+TGG | 0.211985 | 1_4:+55414667 | None:intergenic |
| TTTATTTGTCGCTCCTCTTT+AGG | 0.219151 | 1_4:+55414363 | None:intergenic |
| TAGTTGATGCAAGAGATTTA+TGG | 0.246206 | 1_4:-55414657 | Msa0170940:CDS |
| CAACTGGCCTTGCTGCTTTA+GGG | 0.247842 | 1_4:-55416952 | Msa0170940:CDS |
| ATGCCAAAACATTTGCTTCT+TGG | 0.258381 | 1_4:-55416309 | Msa0170940:CDS |
| CCAACTATTTCCCACACTTT+TGG | 0.260055 | 1_4:+55415843 | None:intergenic |
| TGGAATAGCTGGAACCATTT+TGG | 0.262090 | 1_4:-55417118 | Msa0170940:CDS |
| ATTGCATTTGCATGGATCTT+TGG | 0.270136 | 1_4:-55418931 | Msa0170940:five_prime_UTR |
| ACAAAGTAGCAGTGGTCTTA+TGG | 0.272566 | 1_4:-55414747 | Msa0170940:CDS |
| CATTGATATCACAACCAAAA+TGG | 0.277961 | 1_4:+55417104 | None:intergenic |
| ATCGTGCCCATTTCAGCATT+TGG | 0.278804 | 1_4:-55415375 | Msa0170940:CDS |
| TTCAAAATGGAATTCAGTTT+TGG | 0.279781 | 1_4:+55419055 | None:intergenic |
| TGCCAAAACATTTGCTTCTT+GGG | 0.296895 | 1_4:-55416308 | Msa0170940:intron |
| CAGGCGATATAGAAGATAAT+TGG | 0.322906 | 1_4:-55415813 | Msa0170940:CDS |
| TCAACACAATCATTGGTTTC+GGG | 0.344023 | 1_4:-55414538 | Msa0170940:CDS |
| CTCAACACAATCATTGGTTT+CGG | 0.346117 | 1_4:-55414539 | Msa0170940:CDS |
| AATTTGATGAATGGATGATA+TGG | 0.349429 | 1_4:+55418951 | None:intergenic |
| CTAATGCCCAAATGCTGAAA+TGG | 0.353093 | 1_4:+55415368 | None:intergenic |
| TATATACTAGTGTTTGCTTC+AGG | 0.361288 | 1_4:+55418907 | None:intergenic |
| AGTTGATGCAAGAGATTTAT+GGG | 0.361924 | 1_4:-55414656 | Msa0170940:CDS |
| TCGTGCCCATTTCAGCATTT+GGG | 0.362441 | 1_4:-55415374 | Msa0170940:CDS |
| TTTAATAAAGCTTCACTCAT+TGG | 0.363260 | 1_4:+55416012 | None:intergenic |
| ACAATGATATTAGGGGAATA+TGG | 0.364125 | 1_4:-55416562 | Msa0170940:intron |
| CAAACCATTCACCCATTCAT+TGG | 0.368983 | 1_4:-55414387 | Msa0170940:three_prime_UTR |
| GAAAAGCAACAATGATTTAG+AGG | 0.374068 | 1_4:-55415034 | Msa0170940:intron |
| TACCCAAGAAGCAAATGTTT+TGG | 0.374219 | 1_4:+55416306 | None:intergenic |
| AAGAGTTATATGCTGCAAAA+TGG | 0.375191 | 1_4:-55418688 | Msa0170940:CDS |
| TAAACGTATGCCTGGATCAT+TGG | 0.378772 | 1_4:-55416347 | Msa0170940:CDS |
| CAACTATAGTTTCTGGTTCA+AGG | 0.392974 | 1_4:+55414674 | None:intergenic |
| TAAAGAGGAGCGACAAATAA+AGG | 0.397492 | 1_4:-55414361 | Msa0170940:three_prime_UTR |
| TGTATGTTCTGACACCAAAA+AGG | 0.398154 | 1_4:-55414477 | Msa0170940:CDS |
| AAATAGGCTCCTCTATTAGT+TGG | 0.398912 | 1_4:-55415253 | Msa0170940:intron |
| TGAAGGAAACGTTGAAGCCT+TGG | 0.402252 | 1_4:+55416536 | None:intergenic |
| AGAGAAGAAGATCGGCCTTC+GGG | 0.403250 | 1_4:+55415987 | None:intergenic |
| GCAGATAAACTTGGAGTTCA+AGG | 0.405868 | 1_4:-55415066 | Msa0170940:intron |
| AACGTTTCCTTCAGGAATCA+AGG | 0.411562 | 1_4:-55416526 | Msa0170940:CDS |
| TTATAGATGCAAACGACAAA+TGG | 0.414952 | 1_4:-55415589 | Msa0170940:CDS |
| GAAAGTTTAATCCGAGATAC+AGG | 0.426792 | 1_4:-55417082 | Msa0170940:intron |
| AATGGATGATATGGGTGAAC+AGG | 0.430167 | 1_4:+55418960 | None:intergenic |
| GTAGCACTCAACACAATCAT+TGG | 0.438786 | 1_4:-55414545 | Msa0170940:intron |
| TGATCATCAGATGGAATAGC+TGG | 0.439537 | 1_4:-55417129 | Msa0170940:intron |
| CATAGGAAAGGCTTGAAGTT+GGG | 0.440372 | 1_4:-55416486 | Msa0170940:CDS |
| TCCTCTTTAGGACCAATGAA+TGG | 0.444599 | 1_4:+55414375 | None:intergenic |
| CTCTAGCTCATTATATTCAT+AGG | 0.449054 | 1_4:-55416503 | Msa0170940:CDS |
| AGGACCAATGAATGGGTGAA+TGG | 0.449575 | 1_4:+55414383 | None:intergenic |
| TTCATCAAATTGCATTTGCA+TGG | 0.450766 | 1_4:-55418939 | Msa0170940:five_prime_UTR |
| GCCGACGCAATGGTGTCAAC+TGG | 0.451138 | 1_4:-55416968 | Msa0170940:CDS |
| TTTCCAACTTCAAGCATGTC+AGG | 0.457946 | 1_4:+55415421 | None:intergenic |
| TTTGGTCATGCAGATAAACT+TGG | 0.458528 | 1_4:-55415075 | Msa0170940:intron |
| AAACGTATGCCTGGATCATT+GGG | 0.461695 | 1_4:-55416346 | Msa0170940:CDS |
| TGCAAATGCAATTTGATGAA+TGG | 0.461865 | 1_4:+55418942 | None:intergenic |
| TAGAGAAGAAGATCGGCCTT+CGG | 0.463522 | 1_4:+55415986 | None:intergenic |
| GACAAATGGGCATCTTATGC+TGG | 0.464580 | 1_4:-55415575 | Msa0170940:CDS |
| CCCATTCATTGGTCCTAAAG+AGG | 0.466998 | 1_4:-55414376 | Msa0170940:three_prime_UTR |
| GATCCTGACATGCTTGAAGT+TGG | 0.469508 | 1_4:-55415424 | Msa0170940:CDS |
| TAATGCCCAAATGCTGAAAT+GGG | 0.470549 | 1_4:+55415369 | None:intergenic |
| GGAAATAGTTGGAGAACAAC+AGG | 0.473859 | 1_4:-55415832 | Msa0170940:CDS |
| GACATGCTTGAAGTTGGAAA+TGG | 0.481080 | 1_4:-55415418 | Msa0170940:CDS |
| TTGGGAGTTTATTCAGATGC+CGG | 0.485209 | 1_4:-55416468 | Msa0170940:CDS |
| CAATATTTATGAACACTACA+AGG | 0.489847 | 1_4:+55418791 | None:intergenic |
| CAGCATTTGGGCATTAGCTA+AGG | 0.494033 | 1_4:-55415362 | Msa0170940:intron |
| GGACAATTGATGATATAGAT+TGG | 0.494395 | 1_4:-55419087 | Msa0170940:five_prime_UTR |
| TATGATAATTGTGAAAATAA+CGG | 0.494743 | 1_4:-55416157 | Msa0170940:CDS |
| AAGGCTTCAACGTTTCCTTC+AGG | 0.495513 | 1_4:-55416534 | Msa0170940:CDS |
| GAAGTTATTGCAGTAAATCA+AGG | 0.496776 | 1_4:-55415178 | Msa0170940:intron |
| TATAGATGCAAACGACAAAT+GGG | 0.498323 | 1_4:-55415588 | Msa0170940:CDS |
| TCATAGGAAAGGCTTGAAGT+TGG | 0.501081 | 1_4:-55416487 | Msa0170940:CDS |
| TGTATCCACTCTAGAGAAGA+AGG | 0.502090 | 1_4:-55418713 | Msa0170940:CDS |
| GAAGGAAACGTTGAAGCCTT+GGG | 0.511297 | 1_4:+55416537 | None:intergenic |
| CTTCTCTAGAGTGGATACAT+TGG | 0.511662 | 1_4:+55418717 | None:intergenic |
| TATATGCTGCAAAATGGACT+TGG | 0.511789 | 1_4:-55418682 | Msa0170940:CDS |
| ATGGGAAGATCCTGCAACGT+GGG | 0.517774 | 1_4:-55415866 | Msa0170940:CDS |
| ATGCAACAGTTACTGCGTCT+TGG | 0.519706 | 1_4:-55414708 | Msa0170940:CDS |
| ATTTCATGTCCCAATGATCC+AGG | 0.521509 | 1_4:+55416337 | None:intergenic |
| AATAAAGCTTCACTCATTGG+TGG | 0.521866 | 1_4:+55416015 | None:intergenic |
| AAACGAGCAGCTGTAGATGA+TGG | 0.525810 | 1_4:+55418760 | None:intergenic |
| GACAATTGATGATATAGATT+GGG | 0.525933 | 1_4:-55419086 | Msa0170940:five_prime_UTR |
| CCAAAAGTGTGGGAAATAGT+TGG | 0.526021 | 1_4:-55415843 | Msa0170940:CDS |
| ACTTGTAGTAAACGTATGCC+TGG | 0.526377 | 1_4:-55416355 | Msa0170940:CDS |
| TTGCACTTTCAATGAACTTG+AGG | 0.526529 | 1_4:+55418845 | None:intergenic |
| CTTAACCTTCTTCTCTAGAG+TGG | 0.530979 | 1_4:+55418708 | None:intergenic |
| CCTCTTTAGGACCAATGAAT+GGG | 0.532659 | 1_4:+55414376 | None:intergenic |
| ACTTGGACGTACTCCTCCCA+TGG | 0.536006 | 1_4:-55418665 | Msa0170940:CDS |
| ATATTACATCCAACTAATAG+AGG | 0.536794 | 1_4:+55415244 | None:intergenic |
| ACGGAATAAGCGTTCGCGAA+AGG | 0.537756 | 1_4:-55416138 | Msa0170940:intron |
| TGGGAGTTTATTCAGATGCC+GGG | 0.538487 | 1_4:-55416467 | Msa0170940:intron |
| TCTTCTTCTCTATGTGTGAA+TGG | 0.540517 | 1_4:-55415975 | Msa0170940:intron |
| TAATTACCATTCCATCCTCC+AGG | 0.541589 | 1_4:+55415551 | None:intergenic |
| GTTGCTTATCAATTCATATG+TGG | 0.544672 | 1_4:+55415204 | None:intergenic |
| CTTATGCTGGACCTGGAGGA+TGG | 0.545149 | 1_4:-55415562 | Msa0170940:CDS |
| TGGGCATCTTATGCTGGACC+TGG | 0.550800 | 1_4:-55415569 | Msa0170940:CDS |
| TGCAACGTGGGCCAAAAGTG+TGG | 0.554880 | 1_4:-55415854 | Msa0170940:CDS |
| ATTTGATGAATGGATGATAT+GGG | 0.556106 | 1_4:+55418952 | None:intergenic |
| CCTATTGCAGTAAAATCAAG+TGG | 0.558926 | 1_4:+55414240 | None:intergenic |
| AAGCTCTAGCTAGCACAAGA+AGG | 0.559064 | 1_4:-55414183 | Msa0170940:three_prime_UTR |
| TGATAATGATACCTGTATCT+CGG | 0.559350 | 1_4:+55417071 | None:intergenic |
| CTACGGTGACAGGTATGGGC+AGG | 0.562492 | 1_4:-55414784 | Msa0170940:intron |
| TATTATTTCAGCCGACGCAA+TGG | 0.564004 | 1_4:-55416978 | Msa0170940:intron |
| GCTCATTATATTCATAGGAA+AGG | 0.565444 | 1_4:-55416498 | Msa0170940:CDS |
| TGGATGTAATATTCAAGCAA+TGG | 0.566327 | 1_4:-55415233 | Msa0170940:CDS |
| AATTGATGATATAGATTGGG+TGG | 0.573963 | 1_4:-55419083 | Msa0170940:five_prime_UTR |
| TTAGGGGAATATGGTTCCCA+AGG | 0.579443 | 1_4:-55416553 | Msa0170940:intron |
| CTTGGACGTACTCCTCCCAT+GGG | 0.579757 | 1_4:-55418664 | Msa0170940:CDS |
| GCCAGTTGACACCATTGCGT+CGG | 0.584197 | 1_4:+55416967 | None:intergenic |
| ACTGCGTCTTGGTCTGACAT+AGG | 0.588981 | 1_4:-55414697 | Msa0170940:CDS |
| GGAACTTAATCGAGACTCAA+AGG | 0.593389 | 1_4:-55416768 | Msa0170940:intron |
| AAGTGCAATGGCAAAGATGA+TGG | 0.594220 | 1_4:-55418830 | Msa0170940:exon |
| AATAACAATAAAAGTCACAT+AGG | 0.596393 | 1_4:-55419034 | Msa0170940:five_prime_UTR |
| ATATAGAAGATAATTGGAAG+AGG | 0.597307 | 1_4:-55415807 | Msa0170940:intron |
| GCTGGACCTGGAGGATGGAA+TGG | 0.600529 | 1_4:-55415557 | Msa0170940:intron |
| GCAACGTGGGCCAAAAGTGT+GGG | 0.604665 | 1_4:-55415853 | Msa0170940:CDS |
| CAAGTTCATTGAAAGTGCAA+TGG | 0.605661 | 1_4:-55418842 | Msa0170940:exon |
| GCTAGAGCCTTGATTCCTGA+AGG | 0.622037 | 1_4:+55416519 | None:intergenic |
| ATGAGGGTAGCTTACCCCAT+GGG | 0.623626 | 1_4:+55418649 | None:intergenic |
| ATGCTTGAAGTTGGAAATGG+AGG | 0.629089 | 1_4:-55415415 | Msa0170940:CDS |
| TCACACATAGAGAAGAAGAT+CGG | 0.630428 | 1_4:+55415979 | None:intergenic |
| GATGGGAAGATCCTGCAACG+TGG | 0.636522 | 1_4:-55415867 | Msa0170940:CDS |
| GCATCTTATGCTGGACCTGG+AGG | 0.645529 | 1_4:-55415566 | Msa0170940:CDS |
| AAGCTTTATTAAACTCCCGA+AGG | 0.659088 | 1_4:-55416002 | Msa0170940:CDS |
| GATGAGTATTTGCATAACCA+TGG | 0.669872 | 1_4:+55418877 | None:intergenic |
| ATTTGTACCCTAAAGCAGCA+AGG | 0.672262 | 1_4:+55416945 | None:intergenic |
| AGGGTAGCTTACCCCATGGG+AGG | 0.673038 | 1_4:+55418652 | None:intergenic |
| TGATGCAAGAGATTTATGGG+AGG | 0.716729 | 1_4:-55414653 | Msa0170940:intron |
| CTAGTATATATATAGCACCA+TGG | 0.723625 | 1_4:-55418894 | Msa0170940:five_prime_UTR |
| ATGGGCACGATATTCCTCTG+TGG | 0.732691 | 1_4:+55415387 | None:intergenic |
| AAATGGAGGCATGACCACAG+AGG | 0.748734 | 1_4:-55415401 | Msa0170940:CDS |
| TTGGACGTACTCCTCCCATG+GGG | 0.779061 | 1_4:-55418663 | Msa0170940:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGAAACTAAAAAAAAAT+TGG | + | chr1_4:55414669-55414688 | None:intergenic | 10.0% |
| !! | TATAATTTGAAAAAATGAAT+GGG | + | chr1_4:55415607-55415626 | None:intergenic | 10.0% |
| !!! | AAATTATGTTTTTTTATTAG+TGG | + | chr1_4:55415741-55415760 | None:intergenic | 10.0% |
| !!! | AGGTTAATTTTATTTTAAAA+GGG | + | chr1_4:55415784-55415803 | None:intergenic | 10.0% |
| !!! | AAGGTTAATTTTATTTTAAA+AGG | + | chr1_4:55415785-55415804 | None:intergenic | 10.0% |
| !! | TATATAAATTGAAAATTCTA+AGG | + | chr1_4:55415804-55415823 | None:intergenic | 10.0% |
| !!! | ATAAAATTGGTTTTTTATTA+AGG | - | chr1_4:55415915-55415934 | Msa0170940:intron | 10.0% |
| !!! | AATTATTCTTTATTCTTTTA+TGG | - | chr1_4:55416385-55416404 | Msa0170940:intron | 10.0% |
| !! | AAGAAATTAAACAAATAAAT+GGG | + | chr1_4:55416559-55416578 | None:intergenic | 10.0% |
| !! | AAACATTGAAATATAAAAAT+AGG | + | chr1_4:55417591-55417610 | None:intergenic | 10.0% |
| !!! | ACTTTTATTGTTATTCAAAA+TGG | + | chr1_4:55414226-55414245 | None:intergenic | 15.0% |
| !!! | AATGTTTTAAGAAACAAAAT+CGG | - | chr1_4:55414724-55414743 | Msa0170940:CDS | 15.0% |
| !! | TATTATAATTTAAATCTACG+TGG | - | chr1_4:55414855-55414874 | Msa0170940:intron | 15.0% |
| !!! | TTTTTCATGAAAATAATTTG+AGG | + | chr1_4:55415217-55415236 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGCAAAGAAATA+TGG | - | chr1_4:55415564-55415583 | Msa0170940:CDS | 15.0% |
| !! | CTATAATTTGAAAAAATGAA+TGG | + | chr1_4:55415608-55415627 | None:intergenic | 15.0% |
| !!! | AAAAAACCAATTTTATCATT+CGG | + | chr1_4:55415911-55415930 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTAGATGATTGT+TGG | - | chr1_4:55416472-55416491 | Msa0170940:CDS | 15.0% |
| !!! | TTTTTTTTTAGATGATTGTT+GGG | - | chr1_4:55416473-55416492 | Msa0170940:CDS | 15.0% |
| !! | AGAAATTAAACAAATAAATG+GGG | + | chr1_4:55416558-55416577 | None:intergenic | 15.0% |
| !! | GAAGAAATTAAACAAATAAA+TGG | + | chr1_4:55416560-55416579 | None:intergenic | 15.0% |
| !! | TATATCATATATATAATCCT+AGG | - | chr1_4:55417033-55417052 | Msa0170940:intron | 15.0% |
| !! | TATGATAATTGTGAAAATAA+CGG | - | chr1_4:55417108-55417127 | Msa0170940:CDS | 15.0% |
| !!! | TTAATTCTTTTCTAAAATGA+AGG | - | chr1_4:55417374-55417393 | Msa0170940:intron | 15.0% |
| !!! | TAATTCTTTTCTAAAATGAA+GGG | - | chr1_4:55417375-55417394 | Msa0170940:intron | 15.0% |
| !! | TTGAAATATAAAAATAGGAA+AGG | + | chr1_4:55417586-55417605 | None:intergenic | 15.0% |
| !! | TCAAACAGAATAAAATATAA+AGG | + | chr1_4:55418274-55418293 | None:intergenic | 15.0% |
| !! | GAAGTATGAAAAAAAAAATT+AGG | + | chr1_4:55418325-55418344 | None:intergenic | 15.0% |
| !! | AATAACAATAAAAGTCACAT+AGG | - | chr1_4:55414231-55414250 | Msa0170940:three_prime_UTR | 20.0% |
| !! | TGAAAAATAGATAAGAATGA+GGG | + | chr1_4:55414635-55414654 | None:intergenic | 20.0% |
| !! | ATGAAAAATAGATAAGAATG+AGG | + | chr1_4:55414636-55414655 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAGAAACAAAATC+GGG | - | chr1_4:55414725-55414744 | Msa0170940:CDS | 20.0% |
| !! | TATCATTACTCCTATAATTT+AGG | + | chr1_4:55415033-55415052 | None:intergenic | 20.0% |
| !! | AATTATAGGAGTAATGATAA+TGG | - | chr1_4:55415034-55415053 | Msa0170940:intron | 20.0% |
| !! | AAAAAAAAAGGAAAATTGCA+TGG | - | chr1_4:55415172-55415191 | Msa0170940:intron | 20.0% |
| !!! | AATTATTTTCATGAAAAACG+AGG | - | chr1_4:55415219-55415238 | Msa0170940:CDS | 20.0% |
| !!! | AGAATTTTTCAAGAAATAGT+TGG | - | chr1_4:55415360-55415379 | Msa0170940:intron | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | - | chr1_4:55415374-55415393 | Msa0170940:CDS | 20.0% |
| !! | GTCAAAGTGATTTATAATTT+AGG | - | chr1_4:55415829-55415848 | Msa0170940:CDS | 20.0% |
| !! | AAAGTGATTTATAATTTAGG+TGG | - | chr1_4:55415832-55415851 | Msa0170940:CDS | 20.0% |
| !!! | TTTTTTATTAAGGAGAATGA+TGG | - | chr1_4:55415925-55415944 | Msa0170940:intron | 20.0% |
| !!! | TACTTTTCTTTTTTGTTGAA+AGG | - | chr1_4:55415972-55415991 | Msa0170940:intron | 20.0% |
| !! | ATCTAAGTTGTAAACATAAT+AGG | + | chr1_4:55416233-55416252 | None:intergenic | 20.0% |
| !! | GGGTACAAATATATTAATTT+AGG | - | chr1_4:55416333-55416352 | Msa0170940:CDS | 20.0% |
| !! | GAAATTAAACAAATAAATGG+GGG | + | chr1_4:55416557-55416576 | None:intergenic | 20.0% |
| !! | CTTCGTATGTATTAAAAATT+AGG | - | chr1_4:55417224-55417243 | Msa0170940:intron | 20.0% |
| !!! | AATTCTTTTCTAAAATGAAG+GGG | - | chr1_4:55417376-55417395 | Msa0170940:intron | 20.0% |
| !!! | TAGATTTTGCTATAAATGTA+AGG | + | chr1_4:55417781-55417800 | None:intergenic | 20.0% |
| !! | TTATAGCAAAATCTAGTATT+AGG | - | chr1_4:55417786-55417805 | Msa0170940:intron | 20.0% |
| !! | TTATATGTGTAACTGTTATT+TGG | - | chr1_4:55417812-55417831 | Msa0170940:intron | 20.0% |
| !!! | CTATTTGTATTGGTTTAAAT+AGG | - | chr1_4:55417996-55418015 | Msa0170940:intron | 20.0% |
| !!! | TAAAAATCATATGCTTCTTT+TGG | - | chr1_4:55418172-55418191 | Msa0170940:intron | 20.0% |
| !!! | AGAGTTTTTTACAACTTATA+AGG | - | chr1_4:55418297-55418316 | Msa0170940:intron | 20.0% |
| !! | TCATACTTCAATTAAAAAGA+TGG | - | chr1_4:55418336-55418355 | Msa0170940:intron | 20.0% |
| !! | GACAATTGATGATATAGATT+GGG | - | chr1_4:55414179-55414198 | Msa0170940:three_prime_UTR | 25.0% |
| !! | TTCAAAATGGAATTCAGTTT+TGG | + | chr1_4:55414213-55414232 | None:intergenic | 25.0% |
| ! | ATTTGATGAATGGATGATAT+GGG | + | chr1_4:55414316-55414335 | None:intergenic | 25.0% |
| ! | AATTTGATGAATGGATGATA+TGG | + | chr1_4:55414317-55414336 | None:intergenic | 25.0% |
| ! | CAATATTTATGAACACTACA+AGG | + | chr1_4:55414477-55414496 | None:intergenic | 25.0% |
| ! | TAGACTTACTATCAATTCAA+TGG | + | chr1_4:55414885-55414904 | None:intergenic | 25.0% |
| !! | ATTGAATTGATAGTAAGTCT+AGG | - | chr1_4:55414884-55414903 | Msa0170940:intron | 25.0% |
| !! | ACTTTCCTAAAGATTTCTTT+TGG | - | chr1_4:55414984-55415003 | Msa0170940:intron | 25.0% |
| !!! | ATGGAGTACTGTTTTTTTTA+AGG | + | chr1_4:55415010-55415029 | None:intergenic | 25.0% |
| ! | ATTACTCCTATAATTTAGGA+TGG | + | chr1_4:55415029-55415048 | None:intergenic | 25.0% |
| !! | TTGATTTTGTCCGTTAATAT+TGG | - | chr1_4:55415070-55415089 | Msa0170940:intron | 25.0% |
| ! | TTTGAGGAACAAATGTTATA+TGG | + | chr1_4:55415201-55415220 | None:intergenic | 25.0% |
| !!! | GTTTTAACATTTTTTTCGCT+TGG | + | chr1_4:55415245-55415264 | None:intergenic | 25.0% |
| !!! | GTTTTTTTATTAGTGGTATG+AGG | + | chr1_4:55415734-55415753 | None:intergenic | 25.0% |
| ! | AGATAGTATAAGATAAGATG+TGG | - | chr1_4:55415855-55415874 | Msa0170940:CDS | 25.0% |
| ! | TTATACATATGATCATCAGA+TGG | - | chr1_4:55416127-55416146 | Msa0170940:intron | 25.0% |
| ! | AAGTTGTAAACATAATAGGT+CGG | + | chr1_4:55416229-55416248 | None:intergenic | 25.0% |
| ! | TCAAAATCATATCATTGACA+TGG | + | chr1_4:55416453-55416472 | None:intergenic | 25.0% |
| !!! | CAACAATCATAATTTTTCAG+AGG | + | chr1_4:55416665-55416684 | None:intergenic | 25.0% |
| ! | TTAACGCATTAAATTGTACT+TGG | - | chr1_4:55416823-55416842 | Msa0170940:intron | 25.0% |
| !! | TAAATATTGGTTAACAACCT+AGG | + | chr1_4:55417053-55417072 | None:intergenic | 25.0% |
| ! | TTTAATAAAGCTTCACTCAT+TGG | + | chr1_4:55417256-55417275 | None:intergenic | 25.0% |
| ! | ATATAGAAGATAATTGGAAG+AGG | - | chr1_4:55417458-55417477 | Msa0170940:intron | 25.0% |
| ! | GTTAAAAGAGACATTGTAAA+AGG | + | chr1_4:55417523-55417542 | None:intergenic | 25.0% |
| !! | CTCTTTTAACAACATAATTG+AGG | - | chr1_4:55417533-55417552 | Msa0170940:intron | 25.0% |
| !! | TGTCGTTTAACTATTTGTAT+TGG | - | chr1_4:55417986-55418005 | Msa0170940:intron | 25.0% |
| ! | ATATTACATCCAACTAATAG+AGG | + | chr1_4:55418024-55418043 | None:intergenic | 25.0% |
| ! | TTCAATTAAAAAGATGGATC+TGG | - | chr1_4:55418342-55418361 | Msa0170940:intron | 25.0% |
| !!! | TTGCAATAGTTTCCATTTTT+TGG | + | chr1_4:55418373-55418392 | None:intergenic | 25.0% |
| ! | CACAACTTAATATAAAGCTA+CGG | - | chr1_4:55418464-55418483 | Msa0170940:intron | 25.0% |
| !!! | TGCTACTTTGTTTTTACTAA+GGG | + | chr1_4:55418509-55418528 | None:intergenic | 25.0% |
| ! | TTTCACATAATCAAAACCTT+AGG | + | chr1_4:55418692-55418711 | None:intergenic | 25.0% |
| ! | GGACAATTGATGATATAGAT+TGG | - | chr1_4:55414178-55414197 | Msa0170940:three_prime_UTR | 30.0% |
| ! | AATTGATGATATAGATTGGG+TGG | - | chr1_4:55414182-55414201 | Msa0170940:three_prime_UTR | 30.0% |
| TGCAAATGCAATTTGATGAA+TGG | + | chr1_4:55414326-55414345 | None:intergenic | 30.0% | |
| TTCATCAAATTGCATTTGCA+TGG | - | chr1_4:55414326-55414345 | Msa0170940:three_prime_UTR | 30.0% | |
| TATATACTAGTGTTTGCTTC+AGG | + | chr1_4:55414361-55414380 | None:intergenic | 30.0% | |
| CTAGTATATATATAGCACCA+TGG | - | chr1_4:55414371-55414390 | Msa0170940:three_prime_UTR | 30.0% | |
| AAGAGTTATATGCTGCAAAA+TGG | - | chr1_4:55414577-55414596 | Msa0170940:intron | 30.0% | |
| TTAAGAAACAAAATCGGGTA+TGG | - | chr1_4:55414730-55414749 | Msa0170940:CDS | 30.0% | |
| TAGTACGTAATTTATGTGCA+AGG | - | chr1_4:55414758-55414777 | Msa0170940:CDS | 30.0% | |
| TAAGGCCAAAAGAAATCTTT+AGG | + | chr1_4:55414992-55415011 | None:intergenic | 30.0% | |
| AGTACTCCATCCTAAATTAT+AGG | - | chr1_4:55415020-55415039 | Msa0170940:intron | 30.0% | |
| ! | TATTAACGGACAAAATCAAG+TGG | + | chr1_4:55415069-55415088 | None:intergenic | 30.0% |
| ! | TTTGTCCGTTAATATTGGTT+TGG | - | chr1_4:55415075-55415094 | Msa0170940:intron | 30.0% |
| !! | TTGTCCGTTAATATTGGTTT+GGG | - | chr1_4:55415076-55415095 | Msa0170940:intron | 30.0% |
| AGATCCCAAACCAATATTAA+CGG | + | chr1_4:55415083-55415102 | None:intergenic | 30.0% | |
| !! | TTAATATTGGTTTGGGATCT+TGG | - | chr1_4:55415083-55415102 | Msa0170940:intron | 30.0% |
| GTCTCAAATTTGATTCTTCT+CGG | - | chr1_4:55415117-55415136 | Msa0170940:intron | 30.0% | |
| GTGTGAAAGAAAAAGAAAGA+TGG | + | chr1_4:55415669-55415688 | None:intergenic | 30.0% | |
| GATGTTCACAAAAGCAAAAT+GGG | + | chr1_4:55415884-55415903 | None:intergenic | 30.0% | |
| AGATGTTCACAAAAGCAAAA+TGG | + | chr1_4:55415885-55415904 | None:intergenic | 30.0% | |
| TCTTGACCGAATGATAAAAT+TGG | - | chr1_4:55415902-55415921 | Msa0170940:intron | 30.0% | |
| AAGTATATATCTCCTCACTA+TGG | + | chr1_4:55415957-55415976 | None:intergenic | 30.0% | |
| CATTGATATCACAACCAAAA+TGG | + | chr1_4:55416164-55416183 | None:intergenic | 30.0% | |
| ! | TGATAATGATACCTGTATCT+CGG | + | chr1_4:55416197-55416216 | None:intergenic | 30.0% |
| AGTTGTAAACATAATAGGTC+GGG | + | chr1_4:55416228-55416247 | None:intergenic | 30.0% | |
| ATATCATTGACATGGTAATC+TGG | + | chr1_4:55416445-55416464 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGATGATTGTTGGG+CGG | - | chr1_4:55416476-55416495 | Msa0170940:CDS | 30.0% |
| ! | CTTTTCCTTCGTTGTTTAAA+AGG | - | chr1_4:55416588-55416607 | Msa0170940:intron | 30.0% |
| ! | CTATACCTTTTAAACAACGA+AGG | + | chr1_4:55416596-55416615 | None:intergenic | 30.0% |
| ! | CTTCGTTGTTTAAAAGGTAT+AGG | - | chr1_4:55416594-55416613 | Msa0170940:intron | 30.0% |
| ! | TGGTTTGTGACAATGATATT+AGG | - | chr1_4:55416694-55416713 | Msa0170940:intron | 30.0% |
| GGTTTGTGACAATGATATTA+GGG | - | chr1_4:55416695-55416714 | Msa0170940:intron | 30.0% | |
| GTTTGTGACAATGATATTAG+GGG | - | chr1_4:55416696-55416715 | Msa0170940:intron | 30.0% | |
| ACAATGATATTAGGGGAATA+TGG | - | chr1_4:55416703-55416722 | Msa0170940:intron | 30.0% | |
| ! | CTCTAGCTCATTATATTCAT+AGG | - | chr1_4:55416762-55416781 | Msa0170940:intron | 30.0% |
| GCTCATTATATTCATAGGAA+AGG | - | chr1_4:55416767-55416786 | Msa0170940:intron | 30.0% | |
| CAATTTAATGCGTTAATACC+CGG | + | chr1_4:55416819-55416838 | None:intergenic | 30.0% | |
| !! | CGCGAAAGGTATTTAATATA+TGG | - | chr1_4:55417141-55417160 | Msa0170940:intron | 30.0% |
| !!! | TTTTCTAAAATGAAGGGGAT+GGG | - | chr1_4:55417381-55417400 | Msa0170940:intron | 30.0% |
| AAATAGGAAAGGAATTCTTG+AGG | + | chr1_4:55417575-55417594 | None:intergenic | 30.0% | |
| TTATAGATGCAAACGACAAA+TGG | - | chr1_4:55417676-55417695 | Msa0170940:intron | 30.0% | |
| TATAGATGCAAACGACAAAT+GGG | - | chr1_4:55417677-55417696 | Msa0170940:intron | 30.0% | |
| TGGATGTAATATTCAAGCAA+TGG | - | chr1_4:55418032-55418051 | Msa0170940:intron | 30.0% | |
| GTTGCTTATCAATTCATATG+TGG | + | chr1_4:55418064-55418083 | None:intergenic | 30.0% | |
| GAAGTTATTGCAGTAAATCA+AGG | - | chr1_4:55418087-55418106 | Msa0170940:intron | 30.0% | |
| GAAAAGCAACAATGATTTAG+AGG | - | chr1_4:55418231-55418250 | Msa0170940:intron | 30.0% | |
| GCATGTATATAGTACAGAAA+TGG | + | chr1_4:55418410-55418429 | None:intergenic | 30.0% | |
| !!! | CTACTTTGTTTTTACTAAGG+GGG | + | chr1_4:55418507-55418526 | None:intergenic | 30.0% |
| !!! | GCTACTTTGTTTTTACTAAG+GGG | + | chr1_4:55418508-55418527 | None:intergenic | 30.0% |
| !!! | CTGCTACTTTGTTTTTACTA+AGG | + | chr1_4:55418510-55418529 | None:intergenic | 30.0% |
| TAGTAAAAACAAAGTAGCAG+TGG | - | chr1_4:55418510-55418529 | Msa0170940:intron | 30.0% | |
| ! | TAGTTGATGCAAGAGATTTA+TGG | - | chr1_4:55418608-55418627 | Msa0170940:intron | 30.0% |
| ! | AGTTGATGCAAGAGATTTAT+GGG | - | chr1_4:55418609-55418628 | Msa0170940:intron | 30.0% |
| ! | CAAAGTCATTTAAGTTCCTA+AGG | - | chr1_4:55418673-55418692 | Msa0170940:CDS | 30.0% |
| ! | ATCGAAGATTAACTCCTTTT+TGG | + | chr1_4:55418805-55418824 | None:intergenic | 30.0% |
| ATTGCATTTGCATGGATCTT+TGG | - | chr1_4:55414334-55414353 | Msa0170940:three_prime_UTR | 35.0% | |
| GATGAGTATTTGCATAACCA+TGG | + | chr1_4:55414391-55414410 | None:intergenic | 35.0% | |
| TTGCACTTTCAATGAACTTG+AGG | + | chr1_4:55414423-55414442 | None:intergenic | 35.0% | |
| ! | CAAGTTCATTGAAAGTGCAA+TGG | - | chr1_4:55414423-55414442 | Msa0170940:three_prime_UTR | 35.0% |
| ! | TATATGCTGCAAAATGGACT+TGG | - | chr1_4:55414583-55414602 | Msa0170940:intron | 35.0% |
| TATAGTACTCCATCCTAATG+TGG | - | chr1_4:55414955-55414974 | Msa0170940:intron | 35.0% | |
| ! | AGTATTTTGCCACATTAGGA+TGG | + | chr1_4:55414967-55414986 | None:intergenic | 35.0% |
| !!! | GGAAAGTATTTTGCCACATT+AGG | + | chr1_4:55414971-55414990 | None:intergenic | 35.0% |
| AAAAATGTATCCCGACCATA+TGG | - | chr1_4:55415270-55415289 | Msa0170940:intron | 35.0% | |
| AAAGCCACCATATTTCCATA+TGG | + | chr1_4:55415288-55415307 | None:intergenic | 35.0% | |
| TGATGGAATTATCCATAGTG+AGG | - | chr1_4:55415942-55415961 | Msa0170940:intron | 35.0% | |
| GAAAGTTTAATCCGAGATAC+AGG | - | chr1_4:55416183-55416202 | Msa0170940:intron | 35.0% | |
| GTTGTAAACATAATAGGTCG+GGG | + | chr1_4:55416227-55416246 | None:intergenic | 35.0% | |
| TATGATTGTTGACACCTGAT+TGG | - | chr1_4:55416674-55416693 | Msa0170940:intron | 35.0% | |
| ATCATTGTCACAAACCAATC+AGG | + | chr1_4:55416691-55416710 | None:intergenic | 35.0% | |
| ATGCCAAAACATTTGCTTCT+TGG | - | chr1_4:55416956-55416975 | Msa0170940:CDS | 35.0% | |
| TGCCAAAACATTTGCTTCTT+GGG | - | chr1_4:55416957-55416976 | Msa0170940:CDS | 35.0% | |
| ! | TACCCAAGAAGCAAATGTTT+TGG | + | chr1_4:55416962-55416981 | None:intergenic | 35.0% |
| CATACGAAGCATGTAAGTAT+TGG | + | chr1_4:55417213-55417232 | None:intergenic | 35.0% | |
| AATAAAGCTTCACTCATTGG+TGG | + | chr1_4:55417253-55417272 | None:intergenic | 35.0% | |
| !! | AAGCTTTATTAAACTCCCGA+AGG | - | chr1_4:55417263-55417282 | Msa0170940:intron | 35.0% |
| TCACACATAGAGAAGAAGAT+CGG | + | chr1_4:55417289-55417308 | None:intergenic | 35.0% | |
| TCTTCTTCTCTATGTGTGAA+TGG | - | chr1_4:55417290-55417309 | Msa0170940:intron | 35.0% | |
| ! | ATGGTGAGTTGAATTGATCA+TGG | - | chr1_4:55417309-55417328 | Msa0170940:intron | 35.0% |
| !!! | CTTTTCTAAAATGAAGGGGA+TGG | - | chr1_4:55417380-55417399 | Msa0170940:intron | 35.0% |
| CAGGCGATATAGAAGATAAT+TGG | - | chr1_4:55417452-55417471 | Msa0170940:intron | 35.0% | |
| CTATAATAGAAGTCATGCTG+AGG | + | chr1_4:55417662-55417681 | None:intergenic | 35.0% | |
| TAATGCCCAAATGCTGAAAT+GGG | + | chr1_4:55417899-55417918 | None:intergenic | 35.0% | |
| AAATAGGCTCCTCTATTAGT+TGG | - | chr1_4:55418012-55418031 | Msa0170940:intron | 35.0% | |
| TTTGGTCATGCAGATAAACT+TGG | - | chr1_4:55418190-55418209 | Msa0170940:intron | 35.0% | |
| ! | GATCTGGAACAACCAAAAAA+TGG | - | chr1_4:55418358-55418377 | Msa0170940:intron | 35.0% |
| TAATATAAAGCTACGGTGAC+AGG | - | chr1_4:55418471-55418490 | Msa0170940:intron | 35.0% | |
| !! | CAACTATAGTTTCTGGTTCA+AGG | + | chr1_4:55418594-55418613 | None:intergenic | 35.0% |
| CTTGCATCAACTATAGTTTC+TGG | + | chr1_4:55418601-55418620 | None:intergenic | 35.0% | |
| !! | CTCAACACAATCATTGGTTT+CGG | - | chr1_4:55418726-55418745 | Msa0170940:CDS | 35.0% |
| !! | TCAACACAATCATTGGTTTC+GGG | - | chr1_4:55418727-55418746 | Msa0170940:CDS | 35.0% |
| TGTATGTTCTGACACCAAAA+AGG | - | chr1_4:55418788-55418807 | Msa0170940:CDS | 35.0% | |
| ! | GTTTTTGACACGTACTGTAT+TGG | - | chr1_4:55418855-55418874 | Msa0170940:five_prime_UTR | 35.0% |
| TTTATTTGTCGCTCCTCTTT+AGG | + | chr1_4:55418905-55418924 | None:intergenic | 35.0% | |
| TAAAGAGGAGCGACAAATAA+AGG | - | chr1_4:55418904-55418923 | Msa0170940:five_prime_UTR | 35.0% | |
| CCTATTGCAGTAAAATCAAG+TGG | + | chr1_4:55419028-55419047 | None:intergenic | 35.0% | |
| ! | CCACTTGATTTTACTGCAAT+AGG | - | chr1_4:55419025-55419044 | Msa0170940:five_prime_UTR | 35.0% |
| AATGGATGATATGGGTGAAC+AGG | + | chr1_4:55414308-55414327 | None:intergenic | 40.0% | |
| AAGTGCAATGGCAAAGATGA+TGG | - | chr1_4:55414435-55414454 | Msa0170940:three_prime_UTR | 40.0% | |
| TCTACAGCTGCTCGTTTATT+AGG | - | chr1_4:55414511-55414530 | Msa0170940:CDS | 40.0% | |
| !! | CTTCTCTAGAGTGGATACAT+TGG | + | chr1_4:55414551-55414570 | None:intergenic | 40.0% |
| ! | TGTATCCACTCTAGAGAAGA+AGG | - | chr1_4:55414552-55414571 | Msa0170940:intron | 40.0% |
| ! | CTTAACCTTCTTCTCTAGAG+TGG | + | chr1_4:55414560-55414579 | None:intergenic | 40.0% |
| TAAATAAGTGACCGTTCTCG+TGG | - | chr1_4:55414907-55414926 | Msa0170940:intron | 40.0% | |
| ATCCCGACCATATGGAAATA+TGG | - | chr1_4:55415278-55415297 | Msa0170940:intron | 40.0% | |
| CACCATATTTCCATATGGTC+GGG | + | chr1_4:55415283-55415302 | None:intergenic | 40.0% | |
| CCACCATATTTCCATATGGT+CGG | + | chr1_4:55415284-55415303 | None:intergenic | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr1_4:55415413-55415432 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr1_4:55415436-55415455 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr1_4:55415439-55415458 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | - | chr1_4:55415447-55415466 | Msa0170940:intron | 40.0% | |
| TGATCATCAGATGGAATAGC+TGG | - | chr1_4:55416136-55416155 | Msa0170940:intron | 40.0% | |
| ! | TGGAATAGCTGGAACCATTT+TGG | - | chr1_4:55416147-55416166 | Msa0170940:CDS | 40.0% |
| TATTATTTCAGCCGACGCAA+TGG | - | chr1_4:55416287-55416306 | Msa0170940:intron | 40.0% | |
| ATTTGTACCCTAAAGCAGCA+AGG | + | chr1_4:55416323-55416342 | None:intergenic | 40.0% | |
| GGAACTTAATCGAGACTCAA+AGG | - | chr1_4:55416497-55416516 | Msa0170940:CDS | 40.0% | |
| AACGTTTCCTTCAGGAATCA+AGG | - | chr1_4:55416739-55416758 | Msa0170940:intron | 40.0% | |
| TCATAGGAAAGGCTTGAAGT+TGG | - | chr1_4:55416778-55416797 | Msa0170940:CDS | 40.0% | |
| CATAGGAAAGGCTTGAAGTT+GGG | - | chr1_4:55416779-55416798 | Msa0170940:CDS | 40.0% | |
| TTGGGAGTTTATTCAGATGC+CGG | - | chr1_4:55416797-55416816 | Msa0170940:intron | 40.0% | |
| ACTTGTAGTAAACGTATGCC+TGG | - | chr1_4:55416910-55416929 | Msa0170940:intron | 40.0% | |
| TAAACGTATGCCTGGATCAT+TGG | - | chr1_4:55416918-55416937 | Msa0170940:intron | 40.0% | |
| AAACGTATGCCTGGATCATT+GGG | - | chr1_4:55416919-55416938 | Msa0170940:intron | 40.0% | |
| ATTTCATGTCCCAATGATCC+AGG | + | chr1_4:55416931-55416950 | None:intergenic | 40.0% | |
| ! | CCAACTATTTCCCACACTTT+TGG | + | chr1_4:55417425-55417444 | None:intergenic | 40.0% |
| ! | CCAAAAGTGTGGGAAATAGT+TGG | - | chr1_4:55417422-55417441 | Msa0170940:intron | 40.0% |
| GGAAATAGTTGGAGAACAAC+AGG | - | chr1_4:55417433-55417452 | Msa0170940:intron | 40.0% | |
| TAATTACCATTCCATCCTCC+AGG | + | chr1_4:55417717-55417736 | None:intergenic | 40.0% | |
| TTTCCAACTTCAAGCATGTC+AGG | + | chr1_4:55417847-55417866 | None:intergenic | 40.0% | |
| GACATGCTTGAAGTTGGAAA+TGG | - | chr1_4:55417847-55417866 | Msa0170940:intron | 40.0% | |
| ATGCTTGAAGTTGGAAATGG+AGG | - | chr1_4:55417850-55417869 | Msa0170940:intron | 40.0% | |
| CTAATGCCCAAATGCTGAAA+TGG | + | chr1_4:55417900-55417919 | None:intergenic | 40.0% | |
| GCAGATAAACTTGGAGTTCA+AGG | - | chr1_4:55418199-55418218 | Msa0170940:intron | 40.0% | |
| TGCACGTACACATTATGCTA+TGG | - | chr1_4:55418433-55418452 | Msa0170940:intron | 40.0% | |
| ! | ACAAAGTAGCAGTGGTCTTA+TGG | - | chr1_4:55418518-55418537 | Msa0170940:intron | 40.0% |
| TGATGCAAGAGATTTATGGG+AGG | - | chr1_4:55418612-55418631 | Msa0170940:intron | 40.0% | |
| GTAGCACTCAACACAATCAT+TGG | - | chr1_4:55418720-55418739 | Msa0170940:CDS | 40.0% | |
| CAAACCATTCACCCATTCAT+TGG | - | chr1_4:55418878-55418897 | Msa0170940:five_prime_UTR | 40.0% | |
| !! | CCTCTTTAGGACCAATGAAT+GGG | + | chr1_4:55418892-55418911 | None:intergenic | 40.0% |
| !! | TCCTCTTTAGGACCAATGAA+TGG | + | chr1_4:55418893-55418912 | None:intergenic | 40.0% |
| AAACGAGCAGCTGTAGATGA+TGG | + | chr1_4:55414508-55414527 | None:intergenic | 45.0% | |
| CCGACCATATGGAAATATGG+TGG | - | chr1_4:55415281-55415300 | Msa0170940:intron | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr1_4:55415419-55415438 | None:intergenic | 45.0% |
| TTAGGGGAATATGGTTCCCA+AGG | - | chr1_4:55416712-55416731 | Msa0170940:intron | 45.0% | |
| GAAGGAAACGTTGAAGCCTT+GGG | + | chr1_4:55416731-55416750 | None:intergenic | 45.0% | |
| TGAAGGAAACGTTGAAGCCT+TGG | + | chr1_4:55416732-55416751 | None:intergenic | 45.0% | |
| AAGGCTTCAACGTTTCCTTC+AGG | - | chr1_4:55416731-55416750 | Msa0170940:intron | 45.0% | |
| TGGGAGTTTATTCAGATGCC+GGG | - | chr1_4:55416798-55416817 | Msa0170940:intron | 45.0% | |
| TAGAGAAGAAGATCGGCCTT+CGG | + | chr1_4:55417282-55417301 | None:intergenic | 45.0% | |
| GACAAATGGGCATCTTATGC+TGG | - | chr1_4:55417690-55417709 | Msa0170940:intron | 45.0% | |
| GATCCTGACATGCTTGAAGT+TGG | - | chr1_4:55417841-55417860 | Msa0170940:intron | 45.0% | |
| ATCGTGCCCATTTCAGCATT+TGG | - | chr1_4:55417890-55417909 | Msa0170940:intron | 45.0% | |
| TCGTGCCCATTTCAGCATTT+GGG | - | chr1_4:55417891-55417910 | Msa0170940:intron | 45.0% | |
| CAGCATTTGGGCATTAGCTA+AGG | - | chr1_4:55417903-55417922 | Msa0170940:intron | 45.0% | |
| TAAAGCTACGGTGACAGGTA+TGG | - | chr1_4:55418476-55418495 | Msa0170940:intron | 45.0% | |
| AAAGCTACGGTGACAGGTAT+GGG | - | chr1_4:55418477-55418496 | Msa0170940:intron | 45.0% | |
| ATGCAACAGTTACTGCGTCT+TGG | - | chr1_4:55418557-55418576 | Msa0170940:intron | 45.0% | |
| AGGACCAATGAATGGGTGAA+TGG | + | chr1_4:55418885-55418904 | None:intergenic | 45.0% | |
| CCCATTCATTGGTCCTAAAG+AGG | - | chr1_4:55418889-55418908 | Msa0170940:five_prime_UTR | 45.0% | |
| ! | AAGCTCTAGCTAGCACAAGA+AGG | - | chr1_4:55419082-55419101 | Msa0170940:five_prime_UTR | 45.0% |
| !!! | TTTAACTTTTTAAAAAAAAA+AGG | - | chr1_4:55415160-55415179 | Msa0170940:intron | 5.0% |
| !!! | TTTTTTCTTTTTTTTTTTTT+TGG | - | chr1_4:55415306-55415325 | Msa0170940:intron | 5.0% |
| !! | AGAAAAATTTAAATAAATAT+TGG | + | chr1_4:55417066-55417085 | None:intergenic | 5.0% |
| !!! | ATTTATTTAAATTTTTCTTT+AGG | - | chr1_4:55417068-55417087 | Msa0170940:intron | 5.0% |
| !!! | TTTATTTAAATTTTTCTTTA+GGG | - | chr1_4:55417069-55417088 | Msa0170940:intron | 5.0% |
| ATGAGGGTAGCTTACCCCAT+GGG | + | chr1_4:55414619-55414638 | None:intergenic | 50.0% | |
| AATGAGGGTAGCTTACCCCA+TGG | + | chr1_4:55414620-55414639 | None:intergenic | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr1_4:55415426-55415445 | Msa0170940:CDS | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr1_4:55415431-55415450 | None:intergenic | 50.0% | |
| !! | TCAACTGGCCTTGCTGCTTT+AGG | - | chr1_4:55416312-55416331 | Msa0170940:CDS | 50.0% |
| !! | CAACTGGCCTTGCTGCTTTA+GGG | - | chr1_4:55416313-55416332 | Msa0170940:CDS | 50.0% |
| GCTAGAGCCTTGATTCCTGA+AGG | + | chr1_4:55416749-55416768 | None:intergenic | 50.0% | |
| ACGGAATAAGCGTTCGCGAA+AGG | - | chr1_4:55417127-55417146 | Msa0170940:intron | 50.0% | |
| AGAGAAGAAGATCGGCCTTC+GGG | + | chr1_4:55417281-55417300 | None:intergenic | 50.0% | |
| ATGGGAAGATCCTGCAACGT+GGG | - | chr1_4:55417399-55417418 | Msa0170940:intron | 50.0% | |
| ! | AAATGGAGGCATGACCACAG+AGG | - | chr1_4:55417864-55417883 | Msa0170940:intron | 50.0% |
| ATGGGCACGATATTCCTCTG+TGG | + | chr1_4:55417881-55417900 | None:intergenic | 50.0% | |
| ACTGCGTCTTGGTCTGACAT+AGG | - | chr1_4:55418568-55418587 | Msa0170940:intron | 50.0% | |
| ACTTGGACGTACTCCTCCCA+TGG | - | chr1_4:55414600-55414619 | Msa0170940:intron | 55.0% | |
| CTTGGACGTACTCCTCCCAT+GGG | - | chr1_4:55414601-55414620 | Msa0170940:intron | 55.0% | |
| TTGGACGTACTCCTCCCATG+GGG | - | chr1_4:55414602-55414621 | Msa0170940:intron | 55.0% | |
| GGCTGACTGAGGGTGGAATT+TGG | - | chr1_4:55414928-55414947 | Msa0170940:intron | 55.0% | |
| GCCAGTTGACACCATTGCGT+CGG | + | chr1_4:55416301-55416320 | None:intergenic | 55.0% | |
| GATGGGAAGATCCTGCAACG+TGG | - | chr1_4:55417398-55417417 | Msa0170940:intron | 55.0% | |
| ! | ACACTTTTGGCCCACGTTGC+AGG | + | chr1_4:55417412-55417431 | None:intergenic | 55.0% |
| TGCAACGTGGGCCAAAAGTG+TGG | - | chr1_4:55417411-55417430 | Msa0170940:intron | 55.0% | |
| ! | GCAACGTGGGCCAAAAGTGT+GGG | - | chr1_4:55417412-55417431 | Msa0170940:intron | 55.0% |
| TGGGCATCTTATGCTGGACC+TGG | - | chr1_4:55417696-55417715 | Msa0170940:intron | 55.0% | |
| GCATCTTATGCTGGACCTGG+AGG | - | chr1_4:55417699-55417718 | Msa0170940:intron | 55.0% | |
| CTTATGCTGGACCTGGAGGA+TGG | - | chr1_4:55417703-55417722 | Msa0170940:intron | 55.0% | |
| AGGGTAGCTTACCCCATGGG+AGG | + | chr1_4:55414616-55414635 | None:intergenic | 60.0% | |
| ACCGTTCTCGTGGCTGACTG+AGG | - | chr1_4:55414917-55414936 | Msa0170940:intron | 60.0% | |
| CCCTCAGTCAGCCACGAGAA+CGG | + | chr1_4:55414921-55414940 | None:intergenic | 60.0% | |
| CCGTTCTCGTGGCTGACTGA+GGG | - | chr1_4:55414918-55414937 | Msa0170940:intron | 60.0% | |
| TTCTCGTGGCTGACTGAGGG+TGG | - | chr1_4:55414921-55414940 | Msa0170940:intron | 60.0% | |
| ! | GCCGACGCAATGGTGTCAAC+TGG | - | chr1_4:55416297-55416316 | Msa0170940:intron | 60.0% |
| GCTGGACCTGGAGGATGGAA+TGG | - | chr1_4:55417708-55417727 | Msa0170940:intron | 60.0% | |
| CTACGGTGACAGGTATGGGC+AGG | - | chr1_4:55418481-55418500 | Msa0170940:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 55414178 | 55419109 | 55414178 | ID=Msa0170940;Name=Msa0170940 |
| chr1_4 | mRNA | 55414178 | 55419109 | 55414178 | ID=Msa0170940-mRNA-1;Parent=Msa0170940;Name=Msa0170940-mRNA-1;_AED=0.17;_eAED=0.17;_QI=264|1|1|1|1|1|15|293|414 |
| chr1_4 | exon | 55414178 | 55414563 | 55414178 | ID=Msa0170940-mRNA-1:exon:16591;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55414654 | 55414794 | 55414654 | ID=Msa0170940-mRNA-1:exon:16590;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55415035 | 55415084 | 55415035 | ID=Msa0170940-mRNA-1:exon:16589;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55415179 | 55415269 | 55415179 | ID=Msa0170940-mRNA-1:exon:16588;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55415363 | 55415445 | 55415363 | ID=Msa0170940-mRNA-1:exon:16587;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55415558 | 55415622 | 55415558 | ID=Msa0170940-mRNA-1:exon:16586;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55415808 | 55415891 | 55415808 | ID=Msa0170940-mRNA-1:exon:16585;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55415976 | 55416041 | 55415976 | ID=Msa0170940-mRNA-1:exon:16584;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55416139 | 55416197 | 55416139 | ID=Msa0170940-mRNA-1:exon:16583;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55416309 | 55416384 | 55416309 | ID=Msa0170940-mRNA-1:exon:16582;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55416468 | 55416571 | 55416468 | ID=Msa0170940-mRNA-1:exon:16581;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55416769 | 55416803 | 55416769 | ID=Msa0170940-mRNA-1:exon:16580;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55416933 | 55416989 | 55416933 | ID=Msa0170940-mRNA-1:exon:16579;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55417083 | 55417141 | 55417083 | ID=Msa0170940-mRNA-1:exon:16578;Parent=Msa0170940-mRNA-1 |
| chr1_4 | exon | 55418664 | 55419109 | 55418664 | ID=Msa0170940-mRNA-1:exon:16577;Parent=Msa0170940-mRNA-1 |
| chr1_4 | five_prime_UTR | 55418846 | 55419109 | 55418846 | ID=Msa0170940-mRNA-1:five_prime_utr;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55418664 | 55418845 | 55418664 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55417083 | 55417141 | 55417083 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55416933 | 55416989 | 55416933 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55416769 | 55416803 | 55416769 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55416468 | 55416571 | 55416468 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55416309 | 55416384 | 55416309 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55416139 | 55416197 | 55416139 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55415976 | 55416041 | 55415976 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55415808 | 55415891 | 55415808 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55415558 | 55415622 | 55415558 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55415363 | 55415445 | 55415363 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55415179 | 55415269 | 55415179 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55415035 | 55415084 | 55415035 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55414654 | 55414794 | 55414654 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | CDS | 55414471 | 55414563 | 55414471 | ID=Msa0170940-mRNA-1:cds;Parent=Msa0170940-mRNA-1 |
| chr1_4 | three_prime_UTR | 55414178 | 55414470 | 55414178 | ID=Msa0170940-mRNA-1:three_prime_utr;Parent=Msa0170940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
