Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125970 | XP_013468838.1 | 98.068 | 414 | 8 | 0 | 1 | 414 | 1 | 414 | 0.0 | 841 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125970 | sp|P14749|AGAL_CYATE | 81.327 | 407 | 73 | 1 | 6 | 412 | 7 | 410 | 0.0 | 698 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125970 | A0A072VXV5 | 98.068 | 414 | 8 | 0 | 1 | 414 | 1 | 414 | 0.0 | 841 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030930 | Msa0125970 | 0.923511 | 2.412284e-89 | -8.615850e-47 |
| Msa0074550 | Msa0125970 | 0.954688 | 1.681363e-112 | -8.615850e-47 |
| Msa0125970 | Msa0170940 | 0.921408 | 3.715514e-88 | -8.615850e-47 |
| Msa0125970 | Msa1215530 | 0.811640 | 6.327648e-51 | -8.615850e-47 |
| Msa0125970 | Msa1404790 | 0.807305 | 5.393394e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125970 | MtrunA17_Chr1g0188751 | 98.068 | 414 | 8 | 0 | 1 | 414 | 1 | 414 | 0.0 | 841 |
| Msa0125970 | MtrunA17_Chr1g0188761 | 80.440 | 409 | 75 | 3 | 3 | 411 | 4 | 407 | 0.0 | 697 |
| Msa0125970 | MtrunA17_Chr6g0478231 | 76.276 | 392 | 92 | 1 | 20 | 411 | 29 | 419 | 0.0 | 637 |
| Msa0125970 | MtrunA17_Chr7g0245111 | 60.048 | 413 | 152 | 4 | 1 | 411 | 6 | 407 | 0.0 | 520 |
| Msa0125970 | MtrunA17_Chr7g0245121 | 64.151 | 371 | 131 | 2 | 43 | 411 | 36 | 406 | 0.0 | 516 |
| Msa0125970 | MtrunA17_Chr3g0128871 | 57.518 | 419 | 167 | 5 | 3 | 411 | 8 | 425 | 2.27e-177 | 501 |
| Msa0125970 | MtrunA17_Chr6g0485451 | 90.000 | 220 | 22 | 0 | 195 | 414 | 1 | 220 | 4.30e-145 | 411 |
| Msa0125970 | MtrunA17_Chr8g0381411 | 24.841 | 471 | 235 | 17 | 58 | 412 | 38 | 505 | 2.20e-25 | 107 |
| Msa0125970 | MtrunA17_Chr3g0123531 | 26.611 | 357 | 168 | 12 | 54 | 319 | 36 | 389 | 4.11e-22 | 99.0 |
| Msa0125970 | MtrunA17_Chr2g0327891 | 27.221 | 349 | 164 | 12 | 58 | 319 | 42 | 387 | 4.39e-22 | 98.6 |
| Msa0125970 | MtrunA17_Chr8g0381441 | 26.000 | 350 | 169 | 11 | 58 | 320 | 49 | 395 | 1.47e-21 | 95.9 |
| Msa0125970 | MtrunA17_Chr8g0381461 | 26.039 | 361 | 175 | 13 | 46 | 320 | 29 | 383 | 2.83e-20 | 93.2 |
| Msa0125970 | MtrunA17_Chr8g0381451 | 26.243 | 362 | 174 | 13 | 46 | 320 | 29 | 384 | 3.01e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125970 | AT5G08370.1 | 69.388 | 392 | 119 | 1 | 24 | 414 | 5 | 396 | 0.0 | 588 |
| Msa0125970 | AT5G08370.2 | 72.951 | 366 | 99 | 0 | 49 | 414 | 5 | 370 | 0.0 | 587 |
| Msa0125970 | AT5G08380.1 | 58.495 | 412 | 161 | 4 | 3 | 411 | 4 | 408 | 1.06e-180 | 509 |
| Msa0125970 | AT3G56310.1 | 64.305 | 367 | 126 | 4 | 50 | 412 | 65 | 430 | 5.97e-177 | 501 |
| Msa0125970 | AT3G56310.2 | 60.218 | 367 | 117 | 5 | 50 | 412 | 65 | 406 | 1.64e-158 | 453 |
| Msa0125970 | AT5G08380.2 | 59.561 | 319 | 122 | 2 | 3 | 320 | 4 | 316 | 1.36e-143 | 412 |
| Msa0125970 | AT3G26380.2 | 25.788 | 349 | 169 | 12 | 58 | 319 | 42 | 387 | 3.46e-22 | 98.6 |
| Msa0125970 | AT3G26380.1 | 25.788 | 349 | 169 | 12 | 58 | 319 | 42 | 387 | 7.10e-22 | 98.6 |
Find 130 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTGGCCTTGCTGCTTT+AGG | 0.151894 | 1_3:-54826551 | Msa0125970:CDS |
| GGGTACAAATATATTAATTT+AGG | 0.200247 | 1_3:-54826530 | Msa0125970:intron |
| TCTACAGCTGCTCGTTTATT+AGG | 0.206786 | 1_3:-54828128 | Msa0125970:CDS |
| CTTGCATCAACTATAGTTTC+TGG | 0.211985 | 1_3:+54824272 | None:intergenic |
| TTTATTTGTCGCTCCTCTTT+AGG | 0.219151 | 1_3:+54823968 | None:intergenic |
| TAGTTGATGCAAGAGATTTA+TGG | 0.246206 | 1_3:-54824262 | Msa0125970:CDS |
| CAACTGGCCTTGCTGCTTTA+GGG | 0.247842 | 1_3:-54826550 | Msa0125970:CDS |
| ATGCCAAAACATTTGCTTCT+TGG | 0.258381 | 1_3:-54825908 | Msa0125970:CDS |
| CCAACTATTTCCCACACTTT+TGG | 0.260055 | 1_3:+54825442 | None:intergenic |
| TGGAATAGCTGGAACCATTT+TGG | 0.262090 | 1_3:-54826716 | Msa0125970:CDS |
| ATTGCATTTGCATGGATCTT+TGG | 0.270841 | 1_3:-54828305 | Msa0125970:five_prime_UTR |
| CATTGATATCACAACCAAAA+TGG | 0.277961 | 1_3:+54826702 | None:intergenic |
| ATCGTGCCCATTTCAGCATT+TGG | 0.278804 | 1_3:-54824974 | Msa0125970:CDS |
| TTCAAAATGGAATTCAGTTT+TGG | 0.279781 | 1_3:+54828429 | None:intergenic |
| ACAAAGTAACAGTGGTCTTA+TGG | 0.285095 | 1_3:-54824352 | Msa0125970:CDS |
| TGCCAAAACATTTGCTTCTT+GGG | 0.296895 | 1_3:-54825907 | Msa0125970:intron |
| GAGAATGTGTGATGAGTATT+TGG | 0.309539 | 1_3:+54828241 | None:intergenic |
| CAGGCGATATAGAAGATAAT+TGG | 0.322906 | 1_3:-54825412 | Msa0125970:CDS |
| AAGAGTTATATGTTGCAAAA+TGG | 0.327186 | 1_3:-54828062 | Msa0125970:CDS |
| TCAACACAATCATTGGTTTC+GGG | 0.344023 | 1_3:-54824143 | Msa0125970:CDS |
| CTCAACACAATCATTGGTTT+CGG | 0.346117 | 1_3:-54824144 | Msa0125970:CDS |
| AATTTGATGAATGGATGATA+TGG | 0.349429 | 1_3:+54828325 | None:intergenic |
| CTAATGCCCAAATGCTGAAA+TGG | 0.353093 | 1_3:+54824967 | None:intergenic |
| AGTTGATGCAAGAGATTTAT+GGG | 0.361924 | 1_3:-54824261 | Msa0125970:CDS |
| TCGTGCCCATTTCAGCATTT+GGG | 0.362441 | 1_3:-54824973 | Msa0125970:CDS |
| TTTAATAAAGCTTCACTCAT+TGG | 0.363260 | 1_3:+54825611 | None:intergenic |
| ACAATGATATTAGGGGAATA+TGG | 0.364125 | 1_3:-54826161 | Msa0125970:intron |
| CAAACCATTCACCCATTCAT+TGG | 0.368983 | 1_3:-54823992 | Msa0125970:three_prime_UTR |
| GAAAAGCAACAATGATTTAG+AGG | 0.374068 | 1_3:-54824637 | Msa0125970:intron |
| TACCCAAGAAGCAAATGTTT+TGG | 0.374219 | 1_3:+54825905 | None:intergenic |
| TAAACGTATGCCTGGATCAT+TGG | 0.378772 | 1_3:-54825946 | Msa0125970:CDS |
| CAACTATAGTTTCTGGTTCA+AGG | 0.392974 | 1_3:+54824279 | None:intergenic |
| TAAAGAGGAGCGACAAATAA+AGG | 0.397492 | 1_3:-54823966 | Msa0125970:three_prime_UTR |
| TGTATGTTCTGACACCAAAA+AGG | 0.398154 | 1_3:-54824082 | Msa0125970:CDS |
| AAATAGGCTCCTCTATTAGT+TGG | 0.398912 | 1_3:-54824852 | Msa0125970:intron |
| TGAAGGAAACGTTGAAGCCT+TGG | 0.402252 | 1_3:+54826135 | None:intergenic |
| GCAGATAAACTTGGAGTTCA+AGG | 0.405868 | 1_3:-54824669 | Msa0125970:intron |
| AGAGAAGAAGATCGGCCTTC+CGG | 0.409581 | 1_3:+54825586 | None:intergenic |
| AACGTTTCCTTCAGGAATCA+AGG | 0.411562 | 1_3:-54826125 | Msa0125970:CDS |
| TTATAGATGCAAACGACAAA+TGG | 0.414952 | 1_3:-54825188 | Msa0125970:CDS |
| GAAAGTTTAATCCGAGATAC+AGG | 0.426792 | 1_3:-54826680 | Msa0125970:intron |
| AATGGATGATATGGGTGAAC+AGG | 0.430167 | 1_3:+54828334 | None:intergenic |
| GTAGCACTCAACACAATCAT+TGG | 0.438786 | 1_3:-54824150 | Msa0125970:intron |
| CATAGGAAAGGCTTGAAGTT+GGG | 0.440372 | 1_3:-54826085 | Msa0125970:CDS |
| TCCTCTTTAGGACCAATGAA+TGG | 0.444599 | 1_3:+54823980 | None:intergenic |
| CTCTAGCTCATTATATTCAT+AGG | 0.449054 | 1_3:-54826102 | Msa0125970:CDS |
| TGATGATCAGATGGAATAGC+TGG | 0.449121 | 1_3:-54826727 | Msa0125970:intron |
| AGGACCAATGAATGGGTGAA+TGG | 0.449575 | 1_3:+54823988 | None:intergenic |
| TTCATCAAATTGCATTTGCA+TGG | 0.450766 | 1_3:-54828313 | Msa0125970:five_prime_UTR |
| GCCGACGCAATGGTGTCAAC+TGG | 0.451138 | 1_3:-54826566 | Msa0125970:CDS |
| TTTCCAACTTCAAGCATGTC+AGG | 0.457946 | 1_3:+54825020 | None:intergenic |
| TTTGGTCATGCAGATAAACT+TGG | 0.458528 | 1_3:-54824678 | Msa0125970:intron |
| AAACGTATGCCTGGATCATT+GGG | 0.461695 | 1_3:-54825945 | Msa0125970:CDS |
| TGCAAATGCAATTTGATGAA+TGG | 0.461865 | 1_3:+54828316 | None:intergenic |
| GACAAATGGGCATCTTATGC+TGG | 0.464580 | 1_3:-54825174 | Msa0125970:CDS |
| CCCATTCATTGGTCCTAAAG+AGG | 0.466998 | 1_3:-54823981 | Msa0125970:three_prime_UTR |
| GATCCTGACATGCTTGAAGT+TGG | 0.469508 | 1_3:-54825023 | Msa0125970:CDS |
| TAATGCCCAAATGCTGAAAT+GGG | 0.470549 | 1_3:+54824968 | None:intergenic |
| GGAAATAGTTGGAGAACAAC+AGG | 0.473859 | 1_3:-54825431 | Msa0125970:CDS |
| GACATGCTTGAAGTTGGAAA+TGG | 0.481080 | 1_3:-54825017 | Msa0125970:CDS |
| TTGGGAGTTTATTCAGATGC+CGG | 0.485209 | 1_3:-54826067 | Msa0125970:CDS |
| TATATGTTGCAAAATGGACT+TGG | 0.490268 | 1_3:-54828056 | Msa0125970:CDS |
| CAGCATTTGGGCATTAGCTA+AGG | 0.494033 | 1_3:-54824961 | Msa0125970:intron |
| TATGATAATTGTGAAAATAA+CGG | 0.494743 | 1_3:-54825756 | Msa0125970:CDS |
| AAGGCTTCAACGTTTCCTTC+AGG | 0.495513 | 1_3:-54826133 | Msa0125970:CDS |
| TATAGATGCAAACGACAAAT+GGG | 0.498323 | 1_3:-54825187 | Msa0125970:CDS |
| TCATAGGAAAGGCTTGAAGT+TGG | 0.501081 | 1_3:-54826086 | Msa0125970:CDS |
| TGTGTCCACTCTAGAGAAGA+AGG | 0.510647 | 1_3:-54828087 | Msa0125970:CDS |
| GAAGGAAACGTTGAAGCCTT+GGG | 0.511297 | 1_3:+54826136 | None:intergenic |
| GAAGTTATTGCAGTAAATCA+AGG | 0.514169 | 1_3:-54824777 | Msa0125970:intron |
| ATGGGAAGATCCTGCAACGT+GGG | 0.517774 | 1_3:-54825465 | Msa0125970:CDS |
| TTGCACTTTCAATGAACTTG+AGG | 0.521301 | 1_3:+54828219 | None:intergenic |
| ATTTCATGTCCCAATGATCC+AGG | 0.521509 | 1_3:+54825936 | None:intergenic |
| AATAAAGCTTCACTCATTGG+TGG | 0.521866 | 1_3:+54825614 | None:intergenic |
| AAACGAGCAGCTGTAGATGA+TGG | 0.525810 | 1_3:+54828134 | None:intergenic |
| CCAAAAGTGTGGGAAATAGT+TGG | 0.526021 | 1_3:-54825442 | Msa0125970:CDS |
| ACTTGTAGTAAACGTATGCC+TGG | 0.526377 | 1_3:-54825954 | Msa0125970:CDS |
| ATGCAACAGTTACCGCGTCT+TGG | 0.528322 | 1_3:-54824313 | Msa0125970:CDS |
| CCTCTTTAGGACCAATGAAT+GGG | 0.532659 | 1_3:+54823981 | None:intergenic |
| TGAAAGTGCAATGGCAAAGA+TGG | 0.533248 | 1_3:-54828207 | Msa0125970:exon |
| GTTGCTTATCAATTCATATG+TGG | 0.533927 | 1_3:+54824803 | None:intergenic |
| CAATATTCAAGAACACTACA+AGG | 0.533979 | 1_3:+54828165 | None:intergenic |
| ACTTGGACGTACTCCTCCCA+TGG | 0.536006 | 1_3:-54828039 | Msa0125970:CDS |
| ATATTACATCCAACTAATAG+AGG | 0.536794 | 1_3:+54824843 | None:intergenic |
| ACGGAATAAGCGTTCGCGAA+AGG | 0.537756 | 1_3:-54825737 | Msa0125970:intron |
| TGGGAGTTTATTCAGATGCC+GGG | 0.538487 | 1_3:-54826066 | Msa0125970:intron |
| TCTTCTTCTCTATGTGTGAA+TGG | 0.540517 | 1_3:-54825574 | Msa0125970:intron |
| TAATTACCATTCCATCCTCC+AGG | 0.541589 | 1_3:+54825150 | None:intergenic |
| CTTATGCTGGACCTGGAGGA+TGG | 0.545149 | 1_3:-54825161 | Msa0125970:CDS |
| CTTAACCTTCTTCTCTAGAG+TGG | 0.548624 | 1_3:+54828082 | None:intergenic |
| TGGGCATCTTATGCTGGACC+TGG | 0.550800 | 1_3:-54825168 | Msa0125970:CDS |
| TGCAACGTGGGCCAAAAGTG+TGG | 0.554880 | 1_3:-54825453 | Msa0125970:CDS |
| ATTTGATGAATGGATGATAT+GGG | 0.556106 | 1_3:+54828326 | None:intergenic |
| CCTATTGCAGTAAAATCAAG+TGG | 0.558926 | 1_3:+54823845 | None:intergenic |
| AAGCTCTAGCTAGCACAAGA+AGG | 0.559064 | 1_3:-54823788 | Msa0125970:three_prime_UTR |
| TGATAATGATACCTGTATCT+CGG | 0.559350 | 1_3:+54826669 | None:intergenic |
| CTTCTCTAGAGTGGACACAT+TGG | 0.559897 | 1_3:+54828091 | None:intergenic |
| TATTATTTCAGCCGACGCAA+TGG | 0.564004 | 1_3:-54826576 | Msa0125970:intron |
| GCTCATTATATTCATAGGAA+AGG | 0.565444 | 1_3:-54826097 | Msa0125970:CDS |
| TGGATGTAATATTCAAGCAA+TGG | 0.566327 | 1_3:-54824832 | Msa0125970:CDS |
| AGTGAAGCTTTATTAAACTC+CGG | 0.574235 | 1_3:-54825605 | Msa0125970:CDS |
| AATTGATGATATAGATTGAG+TGG | 0.576219 | 1_3:-54828457 | Msa0125970:five_prime_UTR |
| TTAGGGGAATATGGTTCCCA+AGG | 0.579443 | 1_3:-54826152 | Msa0125970:intron |
| CTTGGACGTACTCCTCCCAT+GGG | 0.579757 | 1_3:-54828038 | Msa0125970:CDS |
| CTACGGTGACAGGTATGGGC+AGG | 0.580772 | 1_3:-54824389 | Msa0125970:intron |
| GCCAGTTGACACCATTGCGT+CGG | 0.584197 | 1_3:+54826565 | None:intergenic |
| ACCGCGTCTTGGTCTGACAT+AGG | 0.589906 | 1_3:-54824302 | Msa0125970:CDS |
| GGAACTTAATCGAGACTCAA+AGG | 0.593389 | 1_3:-54826367 | Msa0125970:intron |
| AATAACAATAAAAGTCACAT+AGG | 0.596393 | 1_3:-54828408 | Msa0125970:five_prime_UTR |
| ATATAGAAGATAATTGGAAG+AGG | 0.597307 | 1_3:-54825406 | Msa0125970:intron |
| GCTGGACCTGGAGGATGGAA+TGG | 0.600529 | 1_3:-54825156 | Msa0125970:intron |
| GCAACGTGGGCCAAAAGTGT+GGG | 0.604665 | 1_3:-54825452 | Msa0125970:CDS |
| CAAGTTCATTGAAAGTGCAA+TGG | 0.605661 | 1_3:-54828216 | Msa0125970:exon |
| AAGCTTTATTAAACTCCGGA+AGG | 0.609339 | 1_3:-54825601 | Msa0125970:CDS |
| GCTAGAGCCTTGATTCCTGA+AGG | 0.622037 | 1_3:+54826118 | None:intergenic |
| ATGAGGGTAGCTTACCCCAT+GGG | 0.623626 | 1_3:+54828023 | None:intergenic |
| ATGCTTGAAGTTGGAAATGG+AGG | 0.629089 | 1_3:-54825014 | Msa0125970:CDS |
| TCACACATAGAGAAGAAGAT+CGG | 0.630428 | 1_3:+54825578 | None:intergenic |
| GATGGGAAGATCCTGCAACG+TGG | 0.636522 | 1_3:-54825466 | Msa0125970:CDS |
| GCATCTTATGCTGGACCTGG+AGG | 0.645529 | 1_3:-54825165 | Msa0125970:CDS |
| ATTTGTACCCTAAAGCAGCA+AGG | 0.672262 | 1_3:+54826543 | None:intergenic |
| AGGGTAGCTTACCCCATGGG+AGG | 0.673038 | 1_3:+54828026 | None:intergenic |
| GCCTATGTCAGACCAAGACG+CGG | 0.688023 | 1_3:+54824301 | None:intergenic |
| GATGAGTATTTGGATAACCA+TGG | 0.700417 | 1_3:+54828251 | None:intergenic |
| TGATGCAAGAGATTTATGGG+AGG | 0.716729 | 1_3:-54824258 | Msa0125970:intron |
| AAGTGCAATGGCAAAGATGG+TGG | 0.720100 | 1_3:-54828204 | Msa0125970:exon |
| CTAGTATATATATAGCACCA+TGG | 0.723625 | 1_3:-54828268 | Msa0125970:five_prime_UTR |
| ATGGGCACGATATTCCTCTG+TGG | 0.732691 | 1_3:+54824986 | None:intergenic |
| AAATGGAGGCATGACCACAG+AGG | 0.748734 | 1_3:-54825000 | Msa0125970:CDS |
| TTGGACGTACTCCTCCCATG+GGG | 0.779061 | 1_3:-54828037 | Msa0125970:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGAAACTAAAAAAAAAAT+TGG | + | chr1_3:54824274-54824293 | None:intergenic | 10.0% |
| !!! | TGGTTAATTTTATTTTAAAA+GGG | + | chr1_3:54825182-54825201 | None:intergenic | 10.0% |
| !!! | ATGGTTAATTTTATTTTAAA+AGG | + | chr1_3:54825183-54825202 | None:intergenic | 10.0% |
| !! | TATATAAATTGAAAATTCTA+TGG | + | chr1_3:54825202-54825221 | None:intergenic | 10.0% |
| !!! | AATTATTCTTTATTCTTTTA+TGG | - | chr1_3:54825766-54825785 | Msa0125970:CDS | 10.0% |
| !! | AAGAAATTAAACAAATAAAT+GGG | + | chr1_3:54825939-54825958 | None:intergenic | 10.0% |
| !! | AGAAAAATTTAAATCAATAT+TGG | + | chr1_3:54826446-54826465 | None:intergenic | 10.0% |
| !!! | ATTGATTTAAATTTTTCTTT+AGG | - | chr1_3:54826448-54826467 | Msa0125970:intron | 10.0% |
| !!! | TTGATTTAAATTTTTCTTTA+GGG | - | chr1_3:54826449-54826468 | Msa0125970:intron | 10.0% |
| !! | AAACATTGAAATATAAAAAT+AGG | + | chr1_3:54826971-54826990 | None:intergenic | 10.0% |
| !!! | ACTTTTATTGTTATTCAAAA+TGG | + | chr1_3:54823831-54823850 | None:intergenic | 15.0% |
| !!! | AATGTTTTAAGAAACAAAAT+CGG | - | chr1_3:54824332-54824351 | Msa0125970:CDS | 15.0% |
| !! | TATTATAATTTAAATCTACG+TGG | - | chr1_3:54824464-54824483 | Msa0125970:intron | 15.0% |
| !!! | TAACTTTTTAAAAAGAGAAA+AGG | - | chr1_3:54824772-54824791 | Msa0125970:intron | 15.0% |
| !! | AAAAAAAAAGCAAAGAAATA+TGG | - | chr1_3:54824962-54824981 | Msa0125970:CDS | 15.0% |
| !! | CTATAATTTGAAAAATGAAT+GGG | + | chr1_3:54825005-54825024 | None:intergenic | 15.0% |
| !! | TCTATAATTTGAAAAATGAA+TGG | + | chr1_3:54825006-54825025 | None:intergenic | 15.0% |
| !!! | AAAATGATGTTTTTTATTAG+TGG | + | chr1_3:54825140-54825159 | None:intergenic | 15.0% |
| !! | CAATTTATATAAAATTTAGG+TGG | - | chr1_3:54825211-54825230 | Msa0125970:intron | 15.0% |
| !!! | TGAAATTGGTTTTTTTATTA+AGG | - | chr1_3:54825295-54825314 | Msa0125970:intron | 15.0% |
| !!! | ATTTTTTTTAGATGATTGTT+GGG | - | chr1_3:54825853-54825872 | Msa0125970:intron | 15.0% |
| !! | AGAAATTAAACAAATAAATG+GGG | + | chr1_3:54825938-54825957 | None:intergenic | 15.0% |
| !! | GAAGAAATTAAACAAATAAA+TGG | + | chr1_3:54825940-54825959 | None:intergenic | 15.0% |
| !! | TATATCATATATATAATCCT+AGG | - | chr1_3:54826413-54826432 | Msa0125970:intron | 15.0% |
| !! | TATGATAATTGTGAAAATAA+CGG | - | chr1_3:54826488-54826507 | Msa0125970:intron | 15.0% |
| !!! | TTAATTCTTTTCTAAAATGA+AGG | - | chr1_3:54826754-54826773 | Msa0125970:intron | 15.0% |
| !!! | TAATTCTTTTCTAAAATGAA+GGG | - | chr1_3:54826755-54826774 | Msa0125970:intron | 15.0% |
| !! | TTGAAATATAAAAATAGGAA+AGG | + | chr1_3:54826966-54826985 | None:intergenic | 15.0% |
| !! | TCAAACAGAATAAAATATAA+AGG | + | chr1_3:54827650-54827669 | None:intergenic | 15.0% |
| !! | TTGAAGTATGAAAAAAAATT+AGG | + | chr1_3:54827701-54827720 | None:intergenic | 15.0% |
| !! | AATAACAATAAAAGTCACAT+AGG | - | chr1_3:54823836-54823855 | Msa0125970:three_prime_UTR | 20.0% |
| !! | TGAAAAATAGATAAGAATGA+GGG | + | chr1_3:54824240-54824259 | None:intergenic | 20.0% |
| !! | ATGAAAAATAGATAAGAATG+AGG | + | chr1_3:54824241-54824260 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAGAAACAAAATC+GGG | - | chr1_3:54824333-54824352 | Msa0125970:CDS | 20.0% |
| !!! | TTGATTTTGTCTGTTAATAT+TGG | - | chr1_3:54824680-54824699 | Msa0125970:intron | 20.0% |
| !!! | TTTTTCATGAAAATAATTGG+AGG | + | chr1_3:54824829-54824848 | None:intergenic | 20.0% |
| !!! | TCGTTTTTCATGAAAATAAT+TGG | + | chr1_3:54824832-54824851 | None:intergenic | 20.0% |
| !!! | AATTATTTTCATGAAAAACG+AGG | - | chr1_3:54824831-54824850 | Msa0125970:CDS | 20.0% |
| !! | AAAAAACCAATTTCATCATT+CGG | + | chr1_3:54825290-54825309 | None:intergenic | 20.0% |
| !!! | TTTTTTATTAAGGAGAATGA+TGG | - | chr1_3:54825305-54825324 | Msa0125970:intron | 20.0% |
| !!! | ACTTTTCTTTTTTTGTTGAA+AGG | - | chr1_3:54825353-54825372 | Msa0125970:intron | 20.0% |
| !! | ATCTAAGTTGTAAACATAAT+AGG | + | chr1_3:54825614-54825633 | None:intergenic | 20.0% |
| !! | GGGTACAAATATATTAATTT+AGG | - | chr1_3:54825714-54825733 | Msa0125970:intron | 20.0% |
| !!! | GATTTTTTTTAGATGATTGT+TGG | - | chr1_3:54825852-54825871 | Msa0125970:intron | 20.0% |
| !! | GAAATTAAACAAATAAATGG+GGG | + | chr1_3:54825937-54825956 | None:intergenic | 20.0% |
| !! | TTTCGTATGCATTAAAAATT+AGG | - | chr1_3:54826604-54826623 | Msa0125970:intron | 20.0% |
| !!! | AATTCTTTTCTAAAATGAAG+GGG | - | chr1_3:54826756-54826775 | Msa0125970:intron | 20.0% |
| !!! | TAGATTTTGCTATAAATGTA+AGG | + | chr1_3:54827161-54827180 | None:intergenic | 20.0% |
| !! | TTATAGCAAAATCTAGTATT+AGG | - | chr1_3:54827166-54827185 | Msa0125970:intron | 20.0% |
| !! | TTATATGTGTAACTGTTATT+TGG | - | chr1_3:54827192-54827211 | Msa0125970:intron | 20.0% |
| !!! | CTATTTGTATTGGTTTAAAT+AGG | - | chr1_3:54827376-54827395 | Msa0125970:intron | 20.0% |
| !!! | TAAAAATCATATGCTTCTTT+TGG | - | chr1_3:54827548-54827567 | Msa0125970:intron | 20.0% |
| !! | TCATACTTCAATTAAAAAGA+TGG | - | chr1_3:54827710-54827729 | Msa0125970:intron | 20.0% |
| !!! | TGTTACTTTGTTTTTACTAA+GGG | + | chr1_3:54827883-54827902 | None:intergenic | 20.0% |
| !! | AATTGATGATATAGATTGAG+TGG | - | chr1_3:54823787-54823806 | Msa0125970:three_prime_UTR | 25.0% |
| !! | TTCAAAATGGAATTCAGTTT+TGG | + | chr1_3:54823818-54823837 | None:intergenic | 25.0% |
| ! | ATTTGATGAATGGATGATAT+GGG | + | chr1_3:54823921-54823940 | None:intergenic | 25.0% |
| ! | AATTTGATGAATGGATGATA+TGG | + | chr1_3:54823922-54823941 | None:intergenic | 25.0% |
| ! | AAGAGTTATATGTTGCAAAA+TGG | - | chr1_3:54824182-54824201 | Msa0125970:intron | 25.0% |
| !!! | TGTTTTAAGAAACAAAATCG+GGG | - | chr1_3:54824334-54824353 | Msa0125970:CDS | 25.0% |
| ! | TAGACTTACTATCAATTCAA+TGG | + | chr1_3:54824494-54824513 | None:intergenic | 25.0% |
| !! | ATTGAATTGATAGTAAGTCT+AGG | - | chr1_3:54824493-54824512 | Msa0125970:intron | 25.0% |
| !! | CTTTTCCTAAAGATTTCTTT+TGG | - | chr1_3:54824594-54824613 | Msa0125970:intron | 25.0% |
| !!! | ATGGAGTACTGTTTTTTTTA+AGG | + | chr1_3:54824620-54824639 | None:intergenic | 25.0% |
| ! | TATTAACAGACAAAATCAAG+TGG | + | chr1_3:54824679-54824698 | None:intergenic | 25.0% |
| !!! | GTTTTAACATTTTTTTCGCT+TGG | + | chr1_3:54824857-54824876 | None:intergenic | 25.0% |
| !!! | TGTTTTTTATTAGTGGTATG+AGG | + | chr1_3:54825133-54825152 | None:intergenic | 25.0% |
| ! | AGATAGTATAAGATAAGATG+TGG | - | chr1_3:54825234-54825253 | Msa0125970:intron | 25.0% |
| ! | TTATACATATGATGATCAGA+TGG | - | chr1_3:54825508-54825527 | Msa0125970:intron | 25.0% |
| ! | TCAAAATCATATCATTGACA+TGG | + | chr1_3:54825834-54825853 | None:intergenic | 25.0% |
| !!! | CAACAATCATAATTTTTCAG+AGG | + | chr1_3:54826045-54826064 | None:intergenic | 25.0% |
| ! | TTAACGCATTAAATTGTACT+TGG | - | chr1_3:54826203-54826222 | Msa0125970:intron | 25.0% |
| ! | TTTAATAAAGCTTCACTCAT+TGG | + | chr1_3:54826636-54826655 | None:intergenic | 25.0% |
| ! | ATATAGAAGATAATTGGAAG+AGG | - | chr1_3:54826838-54826857 | Msa0125970:intron | 25.0% |
| ! | GTTAAAAGAGACATTGTAAA+AGG | + | chr1_3:54826903-54826922 | None:intergenic | 25.0% |
| !! | CTCTTTTAACAACATAATTG+AGG | - | chr1_3:54826913-54826932 | Msa0125970:intron | 25.0% |
| !!! | TATGCATAACATTTCTAGTA+AGG | + | chr1_3:54827125-54827144 | None:intergenic | 25.0% |
| !! | TGTCGTTTAACTATTTGTAT+TGG | - | chr1_3:54827366-54827385 | Msa0125970:intron | 25.0% |
| ! | ATATTACATCCAACTAATAG+AGG | + | chr1_3:54827404-54827423 | None:intergenic | 25.0% |
| ! | AGAGTTTCTTACAACTTATA+AGG | - | chr1_3:54827673-54827692 | Msa0125970:intron | 25.0% |
| ! | TTCAATTAAAAAGATGGATC+TGG | - | chr1_3:54827716-54827735 | Msa0125970:intron | 25.0% |
| !!! | GTTACTTTGTTTTTACTAAG+GGG | + | chr1_3:54827882-54827901 | None:intergenic | 25.0% |
| !!! | CTGTTACTTTGTTTTTACTA+AGG | + | chr1_3:54827884-54827903 | None:intergenic | 25.0% |
| ! | TAGTAAAAACAAAGTAACAG+TGG | - | chr1_3:54827884-54827903 | Msa0125970:intron | 25.0% |
| ! | TTTCACATAATCAAAACCTT+AGG | + | chr1_3:54828066-54828085 | None:intergenic | 25.0% |
| TGCAAATGCAATTTGATGAA+TGG | + | chr1_3:54823931-54823950 | None:intergenic | 30.0% | |
| TTCATCAAATTGCATTTGCA+TGG | - | chr1_3:54823931-54823950 | Msa0125970:three_prime_UTR | 30.0% | |
| CTAGTATATATATAGCACCA+TGG | - | chr1_3:54823976-54823995 | Msa0125970:three_prime_UTR | 30.0% | |
| CAATATTCAAGAACACTACA+AGG | + | chr1_3:54824082-54824101 | None:intergenic | 30.0% | |
| ! | TATATGTTGCAAAATGGACT+TGG | - | chr1_3:54824188-54824207 | Msa0125970:intron | 30.0% |
| TAGTACGTAATTTATGTGCA+AGG | - | chr1_3:54824367-54824386 | Msa0125970:CDS | 30.0% | |
| !!! | GAAAAGTATTTTGCCACATT+AGG | + | chr1_3:54824580-54824599 | None:intergenic | 30.0% |
| TAAGGCCAAAAGAAATCTTT+AGG | + | chr1_3:54824602-54824621 | None:intergenic | 30.0% | |
| AGTACTCCATCCTAAATTAT+AGG | - | chr1_3:54824630-54824649 | Msa0125970:intron | 30.0% | |
| TATCATCGCTCCTATAATTT+AGG | + | chr1_3:54824643-54824662 | None:intergenic | 30.0% | |
| AATTATAGGAGCGATGATAA+TGG | - | chr1_3:54824644-54824663 | Msa0125970:CDS | 30.0% | |
| ! | TTTGTCTGTTAATATTGGCT+TGG | - | chr1_3:54824685-54824704 | Msa0125970:intron | 30.0% |
| !! | TTGTCTGTTAATATTGGCTT+GGG | - | chr1_3:54824686-54824705 | Msa0125970:intron | 30.0% |
| AAGAGAAAAGGAAAATTGCA+TGG | - | chr1_3:54824784-54824803 | Msa0125970:CDS | 30.0% | |
| TTGGAGGAACAAATGTTATA+TGG | + | chr1_3:54824813-54824832 | None:intergenic | 30.0% | |
| GTGTGAAAGAAAAAGAAAGA+TGG | + | chr1_3:54825068-54825087 | None:intergenic | 30.0% | |
| GATGTTCACAAAAGCAAAAT+GGG | + | chr1_3:54825263-54825282 | None:intergenic | 30.0% | |
| AGATGTTCACAAAAGCAAAA+TGG | + | chr1_3:54825264-54825283 | None:intergenic | 30.0% | |
| AAGTATATATCTCCTCACTA+TGG | + | chr1_3:54825337-54825356 | None:intergenic | 30.0% | |
| CATTGATATCACAACCAAAA+TGG | + | chr1_3:54825545-54825564 | None:intergenic | 30.0% | |
| ! | TGATAATGATACCTGTATCT+CGG | + | chr1_3:54825578-54825597 | None:intergenic | 30.0% |
| GTTGTAAACATAATAGGTCT+GGG | + | chr1_3:54825608-54825627 | None:intergenic | 30.0% | |
| AGTTGTAAACATAATAGGTC+TGG | + | chr1_3:54825609-54825628 | None:intergenic | 30.0% | |
| ATATCATTGACATGGTAATC+TGG | + | chr1_3:54825826-54825845 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGATGATTGTTGGG+CGG | - | chr1_3:54825856-54825875 | Msa0125970:intron | 30.0% |
| ! | CTTTTCCTTCGTTGTTTAAA+AGG | - | chr1_3:54825968-54825987 | Msa0125970:intron | 30.0% |
| ! | CTATACCTTTTAAACAACGA+AGG | + | chr1_3:54825976-54825995 | None:intergenic | 30.0% |
| ! | TGGTTTGTGACAATGATATT+AGG | - | chr1_3:54826074-54826093 | Msa0125970:CDS | 30.0% |
| GGTTTGTGACAATGATATTA+GGG | - | chr1_3:54826075-54826094 | Msa0125970:CDS | 30.0% | |
| GTTTGTGACAATGATATTAG+GGG | - | chr1_3:54826076-54826095 | Msa0125970:CDS | 30.0% | |
| ACAATGATATTAGGGGAATA+TGG | - | chr1_3:54826083-54826102 | Msa0125970:CDS | 30.0% | |
| ! | CTCTAGCTCATTATATTCAT+AGG | - | chr1_3:54826142-54826161 | Msa0125970:CDS | 30.0% |
| GCTCATTATATTCATAGGAA+AGG | - | chr1_3:54826147-54826166 | Msa0125970:CDS | 30.0% | |
| CAATTTAATGCGTTAATACC+CGG | + | chr1_3:54826199-54826218 | None:intergenic | 30.0% | |
| ! | TCAATATTGGTTAACAACCT+AGG | + | chr1_3:54826433-54826452 | None:intergenic | 30.0% |
| !! | CGCGAAAGGTATTTAATATA+TGG | - | chr1_3:54826521-54826540 | Msa0125970:intron | 30.0% |
| CATACGAAACATGTAAGTAT+TGG | + | chr1_3:54826593-54826612 | None:intergenic | 30.0% | |
| !! | AGTGAAGCTTTATTAAACTC+CGG | - | chr1_3:54826639-54826658 | Msa0125970:intron | 30.0% |
| !!! | TTTTCTAAAATGAAGGGGAT+GGG | - | chr1_3:54826761-54826780 | Msa0125970:intron | 30.0% |
| AAATAGGAAAGGAATTCTTG+AGG | + | chr1_3:54826955-54826974 | None:intergenic | 30.0% | |
| CTATAATAGAAGTCATACTG+AGG | + | chr1_3:54827042-54827061 | None:intergenic | 30.0% | |
| TTATAGATGCAAACGACAAA+TGG | - | chr1_3:54827056-54827075 | Msa0125970:intron | 30.0% | |
| TATAGATGCAAACGACAAAT+GGG | - | chr1_3:54827057-54827076 | Msa0125970:intron | 30.0% | |
| TGGATGTAATATTCAAGCAA+TGG | - | chr1_3:54827412-54827431 | Msa0125970:intron | 30.0% | |
| GTTGCTTATCAATTCATATG+TGG | + | chr1_3:54827444-54827463 | None:intergenic | 30.0% | |
| GAAGTTATTGCAGTAAATCA+AGG | - | chr1_3:54827467-54827486 | Msa0125970:intron | 30.0% | |
| GAAAAGCAACAATGATTTAG+AGG | - | chr1_3:54827607-54827626 | Msa0125970:intron | 30.0% | |
| TTGCAATAGTTTCCATTCTT+TGG | + | chr1_3:54827747-54827766 | None:intergenic | 30.0% | |
| GCATGTATATAGTACAGAAA+TGG | + | chr1_3:54827784-54827803 | None:intergenic | 30.0% | |
| CACAACTTAATAGAAAGCTA+CGG | - | chr1_3:54827838-54827857 | Msa0125970:intron | 30.0% | |
| ! | TAGTTGATGCAAGAGATTTA+TGG | - | chr1_3:54827982-54828001 | Msa0125970:intron | 30.0% |
| ! | AGTTGATGCAAGAGATTTAT+GGG | - | chr1_3:54827983-54828002 | Msa0125970:intron | 30.0% |
| ! | CAAAGTCATTTAAGTTCCTA+AGG | - | chr1_3:54828047-54828066 | Msa0125970:CDS | 30.0% |
| ! | ATCGAAGATTAACTCCTTTT+TGG | + | chr1_3:54828179-54828198 | None:intergenic | 30.0% |
| ATTGCATTTGCATGGATCTT+TGG | - | chr1_3:54823939-54823958 | Msa0125970:three_prime_UTR | 35.0% | |
| GATGAGTATTTGGATAACCA+TGG | + | chr1_3:54823996-54824015 | None:intergenic | 35.0% | |
| GAGAATGTGTGATGAGTATT+TGG | + | chr1_3:54824006-54824025 | None:intergenic | 35.0% | |
| TTGCACTTTCAATGAACTTG+AGG | + | chr1_3:54824028-54824047 | None:intergenic | 35.0% | |
| ! | CAAGTTCATTGAAAGTGCAA+TGG | - | chr1_3:54824028-54824047 | Msa0125970:three_prime_UTR | 35.0% |
| TAAGAAACAAAATCGGGGTA+TGG | - | chr1_3:54824339-54824358 | Msa0125970:CDS | 35.0% | |
| TATAGTACTCCATCCTAATG+TGG | - | chr1_3:54824564-54824583 | Msa0125970:intron | 35.0% | |
| ! | AGTATTTTGCCACATTAGGA+TGG | + | chr1_3:54824576-54824595 | None:intergenic | 35.0% |
| ATCGCTCCTATAATTTAGGA+TGG | + | chr1_3:54824639-54824658 | None:intergenic | 35.0% | |
| !! | TTAATATTGGCTTGGGATCT+TGG | - | chr1_3:54824693-54824712 | Msa0125970:intron | 35.0% |
| AAACCCACCATATTTCCATA+TGG | + | chr1_3:54824900-54824919 | None:intergenic | 35.0% | |
| TCTTGACCGAATGATGAAAT+TGG | - | chr1_3:54825281-54825300 | Msa0125970:intron | 35.0% | |
| TGATGGAATTATCCATAGTG+AGG | - | chr1_3:54825322-54825341 | Msa0125970:intron | 35.0% | |
| GAAAGTTTAATCCGAGATAC+AGG | - | chr1_3:54825564-54825583 | Msa0125970:intron | 35.0% | |
| !! | AATCGAGACTCAAAGGTATT+TGG | - | chr1_3:54825884-54825903 | Msa0125970:intron | 35.0% |
| TATGATTGTTGACACCTGAT+TGG | - | chr1_3:54826054-54826073 | Msa0125970:intron | 35.0% | |
| ATCATTGTCACAAACCAATC+AGG | + | chr1_3:54826071-54826090 | None:intergenic | 35.0% | |
| ATGCCAAAACATTTGCTTCT+TGG | - | chr1_3:54826336-54826355 | Msa0125970:intron | 35.0% | |
| TGCCAAAACATTTGCTTCTT+GGG | - | chr1_3:54826337-54826356 | Msa0125970:intron | 35.0% | |
| ! | TACCCAAGAAGCAAATGTTT+TGG | + | chr1_3:54826342-54826361 | None:intergenic | 35.0% |
| AATAAAGCTTCACTCATTGG+TGG | + | chr1_3:54826633-54826652 | None:intergenic | 35.0% | |
| !! | AAGCTTTATTAAACTCCGGA+AGG | - | chr1_3:54826643-54826662 | Msa0125970:intron | 35.0% |
| TCACACATAGAGAAGAAGAT+CGG | + | chr1_3:54826669-54826688 | None:intergenic | 35.0% | |
| TCTTCTTCTCTATGTGTGAA+TGG | - | chr1_3:54826670-54826689 | Msa0125970:intron | 35.0% | |
| ! | ATGGTGAGTTGAATTGATCA+TGG | - | chr1_3:54826689-54826708 | Msa0125970:CDS | 35.0% |
| !!! | CTTTTCTAAAATGAAGGGGA+TGG | - | chr1_3:54826760-54826779 | Msa0125970:intron | 35.0% |
| CAGGCGATATAGAAGATAAT+TGG | - | chr1_3:54826832-54826851 | Msa0125970:intron | 35.0% | |
| TAATGCCCAAATGCTGAAAT+GGG | + | chr1_3:54827279-54827298 | None:intergenic | 35.0% | |
| AAATAGGCTCCTCTATTAGT+TGG | - | chr1_3:54827392-54827411 | Msa0125970:intron | 35.0% | |
| TTTGGTCATGCAGATAAACT+TGG | - | chr1_3:54827566-54827585 | Msa0125970:intron | 35.0% | |
| ! | ACAAAGTAACAGTGGTCTTA+TGG | - | chr1_3:54827892-54827911 | Msa0125970:intron | 35.0% |
| !! | CAACTATAGTTTCTGGTTCA+AGG | + | chr1_3:54827968-54827987 | None:intergenic | 35.0% |
| CTTGCATCAACTATAGTTTC+TGG | + | chr1_3:54827975-54827994 | None:intergenic | 35.0% | |
| !! | CTCAACACAATCATTGGTTT+CGG | - | chr1_3:54828100-54828119 | Msa0125970:CDS | 35.0% |
| !! | TCAACACAATCATTGGTTTC+GGG | - | chr1_3:54828101-54828120 | Msa0125970:CDS | 35.0% |
| TGTATGTTCTGACACCAAAA+AGG | - | chr1_3:54828162-54828181 | Msa0125970:CDS | 35.0% | |
| ! | GTTTTTGACACGTACTGTAT+TGG | - | chr1_3:54828229-54828248 | Msa0125970:five_prime_UTR | 35.0% |
| TTTATTTGTCGCTCCTCTTT+AGG | + | chr1_3:54828279-54828298 | None:intergenic | 35.0% | |
| TAAAGAGGAGCGACAAATAA+AGG | - | chr1_3:54828278-54828297 | Msa0125970:five_prime_UTR | 35.0% | |
| CCTATTGCAGTAAAATCAAG+TGG | + | chr1_3:54828402-54828421 | None:intergenic | 35.0% | |
| ! | CCACTTGATTTTACTGCAAT+AGG | - | chr1_3:54828399-54828418 | Msa0125970:five_prime_UTR | 35.0% |
| AATGGATGATATGGGTGAAC+AGG | + | chr1_3:54823913-54823932 | None:intergenic | 40.0% | |
| ! | TGAAAGTGCAATGGCAAAGA+TGG | - | chr1_3:54824037-54824056 | Msa0125970:three_prime_UTR | 40.0% |
| TCTACAGCTGCTCGTTTATT+AGG | - | chr1_3:54824116-54824135 | Msa0125970:CDS | 40.0% | |
| ! | CTTAACCTTCTTCTCTAGAG+TGG | + | chr1_3:54824165-54824184 | None:intergenic | 40.0% |
| TAAATAAGTGACCGTTCTCG+TGG | - | chr1_3:54824516-54824535 | Msa0125970:intron | 40.0% | |
| ATAAATGCATCCCGACCATA+TGG | - | chr1_3:54824882-54824901 | Msa0125970:intron | 40.0% | |
| ATCCCGACCATATGGAAATA+TGG | - | chr1_3:54824890-54824909 | Msa0125970:intron | 40.0% | |
| CACCATATTTCCATATGGTC+GGG | + | chr1_3:54824895-54824914 | None:intergenic | 40.0% | |
| CCACCATATTTCCATATGGT+CGG | + | chr1_3:54824896-54824915 | None:intergenic | 40.0% | |
| CGACCATATGGAAATATGGT+GGG | - | chr1_3:54824894-54824913 | Msa0125970:intron | 40.0% | |
| TGATGATCAGATGGAATAGC+TGG | - | chr1_3:54825517-54825536 | Msa0125970:intron | 40.0% | |
| ! | TGGAATAGCTGGAACCATTT+TGG | - | chr1_3:54825528-54825547 | Msa0125970:intron | 40.0% |
| TATTATTTCAGCCGACGCAA+TGG | - | chr1_3:54825668-54825687 | Msa0125970:intron | 40.0% | |
| ATTTGTACCCTAAAGCAGCA+AGG | + | chr1_3:54825704-54825723 | None:intergenic | 40.0% | |
| GGAACTTAATCGAGACTCAA+AGG | - | chr1_3:54825877-54825896 | Msa0125970:intron | 40.0% | |
| AACGTTTCCTTCAGGAATCA+AGG | - | chr1_3:54826119-54826138 | Msa0125970:CDS | 40.0% | |
| TCATAGGAAAGGCTTGAAGT+TGG | - | chr1_3:54826158-54826177 | Msa0125970:intron | 40.0% | |
| CATAGGAAAGGCTTGAAGTT+GGG | - | chr1_3:54826159-54826178 | Msa0125970:intron | 40.0% | |
| TTGGGAGTTTATTCAGATGC+CGG | - | chr1_3:54826177-54826196 | Msa0125970:intron | 40.0% | |
| ACTTGTAGTAAACGTATGCC+TGG | - | chr1_3:54826290-54826309 | Msa0125970:intron | 40.0% | |
| TAAACGTATGCCTGGATCAT+TGG | - | chr1_3:54826298-54826317 | Msa0125970:intron | 40.0% | |
| AAACGTATGCCTGGATCATT+GGG | - | chr1_3:54826299-54826318 | Msa0125970:intron | 40.0% | |
| ATTTCATGTCCCAATGATCC+AGG | + | chr1_3:54826311-54826330 | None:intergenic | 40.0% | |
| ! | CCAACTATTTCCCACACTTT+TGG | + | chr1_3:54826805-54826824 | None:intergenic | 40.0% |
| ! | CCAAAAGTGTGGGAAATAGT+TGG | - | chr1_3:54826802-54826821 | Msa0125970:intron | 40.0% |
| GGAAATAGTTGGAGAACAAC+AGG | - | chr1_3:54826813-54826832 | Msa0125970:intron | 40.0% | |
| TAATTACCATTCCATCCTCC+AGG | + | chr1_3:54827097-54827116 | None:intergenic | 40.0% | |
| TTTCCAACTTCAAGCATGTC+AGG | + | chr1_3:54827227-54827246 | None:intergenic | 40.0% | |
| GACATGCTTGAAGTTGGAAA+TGG | - | chr1_3:54827227-54827246 | Msa0125970:intron | 40.0% | |
| ATGCTTGAAGTTGGAAATGG+AGG | - | chr1_3:54827230-54827249 | Msa0125970:intron | 40.0% | |
| CTAATGCCCAAATGCTGAAA+TGG | + | chr1_3:54827280-54827299 | None:intergenic | 40.0% | |
| GCAGATAAACTTGGAGTTCA+AGG | - | chr1_3:54827575-54827594 | Msa0125970:intron | 40.0% | |
| ! | GATCTGGAACAACCAAAGAA+TGG | - | chr1_3:54827732-54827751 | Msa0125970:intron | 40.0% |
| TGCACGTACACATTATGCTA+TGG | - | chr1_3:54827807-54827826 | Msa0125970:intron | 40.0% | |
| TAATAGAAAGCTACGGTGAC+AGG | - | chr1_3:54827845-54827864 | Msa0125970:intron | 40.0% | |
| TGATGCAAGAGATTTATGGG+AGG | - | chr1_3:54827986-54828005 | Msa0125970:intron | 40.0% | |
| GTAGCACTCAACACAATCAT+TGG | - | chr1_3:54828094-54828113 | Msa0125970:CDS | 40.0% | |
| CAAACCATTCACCCATTCAT+TGG | - | chr1_3:54828252-54828271 | Msa0125970:five_prime_UTR | 40.0% | |
| !! | CCTCTTTAGGACCAATGAAT+GGG | + | chr1_3:54828266-54828285 | None:intergenic | 40.0% |
| !! | TCCTCTTTAGGACCAATGAA+TGG | + | chr1_3:54828267-54828286 | None:intergenic | 40.0% |
| AAGTGCAATGGCAAAGATGG+TGG | - | chr1_3:54824040-54824059 | Msa0125970:three_prime_UTR | 45.0% | |
| AAACGAGCAGCTGTAGATGA+TGG | + | chr1_3:54824113-54824132 | None:intergenic | 45.0% | |
| !! | CTTCTCTAGAGTGGACACAT+TGG | + | chr1_3:54824156-54824175 | None:intergenic | 45.0% |
| ! | TGTGTCCACTCTAGAGAAGA+AGG | - | chr1_3:54824157-54824176 | Msa0125970:intron | 45.0% |
| TCTCTGTGCGAATTTGAGTG+AGG | - | chr1_3:54824744-54824763 | Msa0125970:intron | 45.0% | |
| CCGACCATATGGAAATATGG+TGG | - | chr1_3:54824893-54824912 | Msa0125970:intron | 45.0% | |
| TTAGGGGAATATGGTTCCCA+AGG | - | chr1_3:54826092-54826111 | Msa0125970:CDS | 45.0% | |
| GAAGGAAACGTTGAAGCCTT+GGG | + | chr1_3:54826111-54826130 | None:intergenic | 45.0% | |
| TGAAGGAAACGTTGAAGCCT+TGG | + | chr1_3:54826112-54826131 | None:intergenic | 45.0% | |
| AAGGCTTCAACGTTTCCTTC+AGG | - | chr1_3:54826111-54826130 | Msa0125970:CDS | 45.0% | |
| TGGGAGTTTATTCAGATGCC+GGG | - | chr1_3:54826178-54826197 | Msa0125970:intron | 45.0% | |
| GACAAATGGGCATCTTATGC+TGG | - | chr1_3:54827070-54827089 | Msa0125970:intron | 45.0% | |
| GATCCTGACATGCTTGAAGT+TGG | - | chr1_3:54827221-54827240 | Msa0125970:intron | 45.0% | |
| ATCGTGCCCATTTCAGCATT+TGG | - | chr1_3:54827270-54827289 | Msa0125970:intron | 45.0% | |
| TCGTGCCCATTTCAGCATTT+GGG | - | chr1_3:54827271-54827290 | Msa0125970:intron | 45.0% | |
| CAGCATTTGGGCATTAGCTA+AGG | - | chr1_3:54827283-54827302 | Msa0125970:intron | 45.0% | |
| AAAGCTACGGTGACAGGTAT+GGG | - | chr1_3:54827851-54827870 | Msa0125970:intron | 45.0% | |
| AGGACCAATGAATGGGTGAA+TGG | + | chr1_3:54828259-54828278 | None:intergenic | 45.0% | |
| CCCATTCATTGGTCCTAAAG+AGG | - | chr1_3:54828263-54828282 | Msa0125970:five_prime_UTR | 45.0% | |
| ! | AAGCTCTAGCTAGCACAAGA+AGG | - | chr1_3:54828456-54828475 | Msa0125970:five_prime_UTR | 45.0% |
| !! | TTTCAATTTATATAAAATTT+AGG | - | chr1_3:54825208-54825227 | Msa0125970:intron | 5.0% |
| ATGAGGGTAGCTTACCCCAT+GGG | + | chr1_3:54824224-54824243 | None:intergenic | 50.0% | |
| AATGAGGGTAGCTTACCCCA+TGG | + | chr1_3:54824225-54824244 | None:intergenic | 50.0% | |
| !! | TCAACTGGCCTTGCTGCTTT+AGG | - | chr1_3:54825693-54825712 | Msa0125970:intron | 50.0% |
| !! | CAACTGGCCTTGCTGCTTTA+GGG | - | chr1_3:54825694-54825713 | Msa0125970:intron | 50.0% |
| GCTAGAGCCTTGATTCCTGA+AGG | + | chr1_3:54826129-54826148 | None:intergenic | 50.0% | |
| ACGGAATAAGCGTTCGCGAA+AGG | - | chr1_3:54826507-54826526 | Msa0125970:intron | 50.0% | |
| AGAGAAGAAGATCGGCCTTC+CGG | + | chr1_3:54826661-54826680 | None:intergenic | 50.0% | |
| ATGGGAAGATCCTGCAACGT+GGG | - | chr1_3:54826779-54826798 | Msa0125970:intron | 50.0% | |
| ! | AAATGGAGGCATGACCACAG+AGG | - | chr1_3:54827244-54827263 | Msa0125970:intron | 50.0% |
| ATGGGCACGATATTCCTCTG+TGG | + | chr1_3:54827261-54827280 | None:intergenic | 50.0% | |
| GAAAGCTACGGTGACAGGTA+TGG | - | chr1_3:54827850-54827869 | Msa0125970:intron | 50.0% | |
| ATGCAACAGTTACCGCGTCT+TGG | - | chr1_3:54827931-54827950 | Msa0125970:intron | 50.0% | |
| ACTTGGACGTACTCCTCCCA+TGG | - | chr1_3:54824205-54824224 | Msa0125970:intron | 55.0% | |
| CTTGGACGTACTCCTCCCAT+GGG | - | chr1_3:54824206-54824225 | Msa0125970:intron | 55.0% | |
| TTGGACGTACTCCTCCCATG+GGG | - | chr1_3:54824207-54824226 | Msa0125970:intron | 55.0% | |
| GGCTGACTGAGGGTGGAATT+TGG | - | chr1_3:54824537-54824556 | Msa0125970:intron | 55.0% | |
| GCCAGTTGACACCATTGCGT+CGG | + | chr1_3:54825682-54825701 | None:intergenic | 55.0% | |
| GATGGGAAGATCCTGCAACG+TGG | - | chr1_3:54826778-54826797 | Msa0125970:intron | 55.0% | |
| ! | ACACTTTTGGCCCACGTTGC+AGG | + | chr1_3:54826792-54826811 | None:intergenic | 55.0% |
| TGCAACGTGGGCCAAAAGTG+TGG | - | chr1_3:54826791-54826810 | Msa0125970:intron | 55.0% | |
| ! | GCAACGTGGGCCAAAAGTGT+GGG | - | chr1_3:54826792-54826811 | Msa0125970:intron | 55.0% |
| TGGGCATCTTATGCTGGACC+TGG | - | chr1_3:54827076-54827095 | Msa0125970:intron | 55.0% | |
| GCATCTTATGCTGGACCTGG+AGG | - | chr1_3:54827079-54827098 | Msa0125970:intron | 55.0% | |
| CTTATGCTGGACCTGGAGGA+TGG | - | chr1_3:54827083-54827102 | Msa0125970:intron | 55.0% | |
| ACCGCGTCTTGGTCTGACAT+AGG | - | chr1_3:54827942-54827961 | Msa0125970:intron | 55.0% | |
| GCCTATGTCAGACCAAGACG+CGG | + | chr1_3:54827946-54827965 | None:intergenic | 55.0% | |
| AGGGTAGCTTACCCCATGGG+AGG | + | chr1_3:54824221-54824240 | None:intergenic | 60.0% | |
| ACCGTTCTCGTGGCTGACTG+AGG | - | chr1_3:54824526-54824545 | Msa0125970:intron | 60.0% | |
| CCCTCAGTCAGCCACGAGAA+CGG | + | chr1_3:54824530-54824549 | None:intergenic | 60.0% | |
| CCGTTCTCGTGGCTGACTGA+GGG | - | chr1_3:54824527-54824546 | Msa0125970:intron | 60.0% | |
| TTCTCGTGGCTGACTGAGGG+TGG | - | chr1_3:54824530-54824549 | Msa0125970:intron | 60.0% | |
| ! | GCCGACGCAATGGTGTCAAC+TGG | - | chr1_3:54825678-54825697 | Msa0125970:intron | 60.0% |
| GCTGGACCTGGAGGATGGAA+TGG | - | chr1_3:54827088-54827107 | Msa0125970:intron | 60.0% | |
| CTACGGTGACAGGTATGGGC+AGG | - | chr1_3:54827855-54827874 | Msa0125970:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 54823783 | 54828483 | 54823783 | ID=Msa0125970;Name=Msa0125970 |
| chr1_3 | mRNA | 54823783 | 54828483 | 54823783 | ID=Msa0125970-mRNA-1;Parent=Msa0125970;Name=Msa0125970-mRNA-1;_AED=0.30;_eAED=0.30;_QI=264|1|1|1|1|1|15|293|414 |
| chr1_3 | exon | 54823783 | 54824168 | 54823783 | ID=Msa0125970-mRNA-1:exon:16946;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54824259 | 54824399 | 54824259 | ID=Msa0125970-mRNA-1:exon:16945;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54824638 | 54824687 | 54824638 | ID=Msa0125970-mRNA-1:exon:16944;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54824778 | 54824868 | 54824778 | ID=Msa0125970-mRNA-1:exon:16943;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54824962 | 54825044 | 54824962 | ID=Msa0125970-mRNA-1:exon:16942;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54825157 | 54825221 | 54825157 | ID=Msa0125970-mRNA-1:exon:16941;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54825407 | 54825490 | 54825407 | ID=Msa0125970-mRNA-1:exon:16940;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54825575 | 54825640 | 54825575 | ID=Msa0125970-mRNA-1:exon:16939;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54825738 | 54825796 | 54825738 | ID=Msa0125970-mRNA-1:exon:16938;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54825908 | 54825983 | 54825908 | ID=Msa0125970-mRNA-1:exon:16937;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54826067 | 54826170 | 54826067 | ID=Msa0125970-mRNA-1:exon:16936;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54826368 | 54826402 | 54826368 | ID=Msa0125970-mRNA-1:exon:16935;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54826531 | 54826587 | 54826531 | ID=Msa0125970-mRNA-1:exon:16934;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54826681 | 54826739 | 54826681 | ID=Msa0125970-mRNA-1:exon:16933;Parent=Msa0125970-mRNA-1 |
| chr1_3 | exon | 54828038 | 54828483 | 54828038 | ID=Msa0125970-mRNA-1:exon:16932;Parent=Msa0125970-mRNA-1 |
| chr1_3 | five_prime_UTR | 54828220 | 54828483 | 54828220 | ID=Msa0125970-mRNA-1:five_prime_utr;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54828038 | 54828219 | 54828038 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54826681 | 54826739 | 54826681 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54826531 | 54826587 | 54826531 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54826368 | 54826402 | 54826368 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54826067 | 54826170 | 54826067 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54825908 | 54825983 | 54825908 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54825738 | 54825796 | 54825738 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54825575 | 54825640 | 54825575 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54825407 | 54825490 | 54825407 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54825157 | 54825221 | 54825157 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54824962 | 54825044 | 54824962 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54824778 | 54824868 | 54824778 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54824638 | 54824687 | 54824638 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54824259 | 54824399 | 54824259 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | CDS | 54824076 | 54824168 | 54824076 | ID=Msa0125970-mRNA-1:cds;Parent=Msa0125970-mRNA-1 |
| chr1_3 | three_prime_UTR | 54823783 | 54824075 | 54823783 | ID=Msa0125970-mRNA-1:three_prime_utr;Parent=Msa0125970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
