AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074550 MtrunA17_Chr1g0188751 94.500 400 2 1 283 662 15 414 0.0 773
Msa0074550 MtrunA17_Chr1g0188751 82.373 295 43 1 1 286 114 408 3.27e-176 508
Msa0074550 MtrunA17_Chr1g0188761 77.250 400 66 4 280 659 13 407 0.0 640
Msa0074550 MtrunA17_Chr1g0188761 91.186 295 17 1 1 286 110 404 0.0 551
Msa0074550 MtrunA17_Chr6g0478231 72.237 389 87 2 291 659 32 419 0.0 588
Msa0074550 MtrunA17_Chr6g0478231 77.288 295 58 1 1 286 122 416 7.87e-165 479
Msa0074550 MtrunA17_Chr7g0245111 60.743 377 126 3 305 659 31 407 2.82e-168 487
Msa0074550 MtrunA17_Chr7g0245111 60.943 297 105 3 1 286 108 404 1.47e-121 367
Msa0074550 MtrunA17_Chr7g0245121 61.186 371 122 3 311 659 36 406 1.36e-166 483
Msa0074550 MtrunA17_Chr7g0245121 61.616 297 103 3 1 286 107 403 5.37e-123 371
Msa0074550 MtrunA17_Chr3g0128871 59.733 375 120 4 312 659 55 425 7.71e-161 469
Msa0074550 MtrunA17_Chr3g0128871 61.415 311 105 4 1 298 125 433 2.38e-131 394
Msa0074550 MtrunA17_Chr6g0485451 81.818 220 20 1 463 662 1 220 1.18e-122 363
Msa0074550 MtrunA17_Chr6g0485451 78.972 214 36 1 82 286 1 214 2.91e-113 339
Msa0074550 MtrunA17_Chr3g0123531 26.431 367 176 12 311 586 25 388 5.09e-21 97.8
Msa0074550 MtrunA17_Chr3g0123531 26.408 284 129 9 1 206 108 389 4.18e-14 75.9
Msa0074550 MtrunA17_Chr2g0327891 27.056 377 181 14 297 586 17 386 1.41e-20 96.3
Msa0074550 MtrunA17_Chr2g0327891 27.143 280 128 9 1 206 110 387 1.43e-14 77.4
Msa0074550 MtrunA17_Chr8g0381411 23.142 471 223 14 326 660 38 505 2.29e-20 95.1
Msa0074550 MtrunA17_Chr8g0381411 27.046 281 129 9 1 207 106 384 6.16e-16 81.3
Msa0074550 MtrunA17_Chr8g0381441 25.862 348 168 11 326 586 49 393 3.58e-20 93.6
Msa0074550 MtrunA17_Chr8g0381441 27.046 281 129 9 1 207 117 395 1.77e-16 82.0
Msa0074550 MtrunA17_Chr8g0381451 25.833 360 174 12 314 586 29 382 1.49e-18 90.1
Msa0074550 MtrunA17_Chr8g0381451 27.046 281 129 10 1 207 106 384 3.66e-14 75.9
Msa0074550 MtrunA17_Chr8g0381461 25.905 359 174 13 314 586 29 381 2.02e-18 89.4
Msa0074550 MtrunA17_Chr8g0381461 32.955 176 93 6 55 207 210 383 1.01e-14 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074550 AT5G08370.1 65.561 392 114 2 292 662 5 396 0.0 546
Msa0074550 AT5G08370.1 72.355 293 72 1 1 284 96 388 3.73e-154 451
Msa0074550 AT5G08370.2 68.852 366 94 1 317 662 5 370 0.0 543
Msa0074550 AT5G08370.2 72.355 293 72 1 1 284 70 362 6.95e-154 449
Msa0074550 AT5G08380.1 58.015 393 142 3 289 659 17 408 6.43e-163 474
Msa0074550 AT5G08380.1 61.856 291 101 2 1 281 110 400 4.53e-122 369
Msa0074550 AT3G56310.1 60.763 367 119 3 318 660 65 430 6.93e-160 467
Msa0074550 AT3G56310.1 61.794 301 101 3 1 288 129 428 1.40e-128 387
Msa0074550 AT3G56310.2 56.676 367 110 4 318 660 65 406 7.13e-142 420
Msa0074550 AT3G56310.2 61.856 291 97 3 11 288 115 404 6.72e-124 374
Msa0074550 AT5G08380.2 62.126 301 114 0 289 589 17 317 6.56e-138 406
Msa0074550 AT5G08380.2 70.048 207 62 0 1 207 110 316 2.05e-100 310
Msa0074550 AT3G26380.2 25.575 348 169 12 326 586 42 386 1.12e-20 96.3
Msa0074550 AT3G26380.2 31.073 177 97 6 53 206 213 387 4.20e-15 79.0
Msa0074550 AT3G26380.1 25.575 348 169 12 326 586 42 386 3.47e-20 95.5
Msa0074550 AT3G26380.1 31.073 177 97 6 53 206 213 387 5.62e-15 79.0

Find 179 sgRNAs with CRISPR-Local

Find 856 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCGGATTCAAACAATAAA+TGG 0.147087 1_2:-49216093 Msa0074550:CDS
TCAACTGGCCTTGCTGCTTT+AGG 0.151894 1_2:-49205098 Msa0074550:CDS
CTAATGCCCAAATGCTAAAA+TGG 0.195312 1_2:+49203514 None:intergenic
TTGATTAAATACCTTTCTTT+AGG 0.196467 1_2:+49216590 None:intergenic
GGGTACAAATATATTAATTT+AGG 0.200247 1_2:-49205077 Msa0074550:intron
CTTGCATCAACTATAGTTTC+TGG 0.211985 1_2:+49202819 None:intergenic
TTTATTTGTCGCTCCTCTTT+AGG 0.219151 1_2:+49202515 None:intergenic
ATGCTAAAACATTTGCTTCT+TGG 0.230773 1_2:-49216810 Msa0074550:CDS
TAGTTGATGCAAGAGATTTA+TGG 0.246206 1_2:-49202809 Msa0074550:CDS
CAACTGGCCTTGCTGCTTTA+GGG 0.247842 1_2:-49205097 Msa0074550:CDS
ATGCCAAAACATTTGCTTCT+TGG 0.258381 1_2:-49204455 Msa0074550:CDS
CCAACTATTTCCCACACTTT+TGG 0.260055 1_2:+49203989 None:intergenic
TGGAATAGCTGGAACCATTT+TGG 0.262090 1_2:-49205263 Msa0074550:CDS
ACAAAGTAGCAGTGGTCTTA+TGG 0.272566 1_2:-49202899 Msa0074550:CDS
CATTGATATCACAACCAAAA+TGG 0.277961 1_2:+49205249 None:intergenic
TGCTAAAACATTTGCTTCTT+GGG 0.279893 1_2:-49216809 Msa0074550:intron
TGCCAAAACATTTGCTTCTT+GGG 0.296895 1_2:-49204454 Msa0074550:intron
TCTACAGCTACTCGCTTATT+AGG 0.307891 1_2:-49206714 Msa0074550:CDS
AAGAGTTATATGTTGCAAAA+TGG 0.314815 1_2:-49206648 Msa0074550:CDS
ATCGTTCTCATTTCAGCATA+TGG 0.316070 1_2:-49215883 Msa0074550:CDS
CAGGCGATATAGAAGATAAT+TGG 0.322906 1_2:-49203959 Msa0074550:CDS
CAGGTGATATTGAAGATAAT+TGG 0.330171 1_2:-49216267 Msa0074550:CDS
TTCATTAAGGCTTCACTCAT+TGG 0.334944 1_2:+49216470 None:intergenic
TGATTAAATACCTTTCTTTA+GGG 0.343598 1_2:+49216591 None:intergenic
TCAACACAATCATTGGTTTC+GGG 0.344023 1_2:-49202690 Msa0074550:CDS
CTCAACACAATCATTGGTTT+CGG 0.346117 1_2:-49202691 Msa0074550:CDS
CACGACAAGGGTTTAAAGTT+GGG 0.350233 1_2:-49216992 Msa0074550:CDS
TGACCTTCCAGATTTCATTA+AGG 0.359870 1_2:+49216457 None:intergenic
AGTTGATGCAAGAGATTTAT+GGG 0.361924 1_2:-49202808 Msa0074550:CDS
CTTGCATCAACAATGGCTTC+TGG 0.362303 1_2:+49214996 None:intergenic
TTTAATAAAGCTTCACTCAT+TGG 0.363260 1_2:+49204158 None:intergenic
ACAATGATATTAGGGGAATA+TGG 0.364125 1_2:-49204708 Msa0074550:intron
TTGTTGATGCAAGAGATCTA+TGG 0.366588 1_2:-49214986 Msa0074550:CDS
CAAACCATTCACCCATTCAT+TGG 0.368983 1_2:-49202539 Msa0074550:three_prime_UTR
TACCCAAGAAGCAAATGTTT+TGG 0.374219 1_2:+49204452 None:intergenic
TAAACGTATGCCTGGATCAT+TGG 0.378772 1_2:-49204493 Msa0074550:CDS
AGTGAAGCCTTAATGAAATC+TGG 0.387023 1_2:-49216464 Msa0074550:CDS
CAACTATAGTTTCTGGTTCA+AGG 0.392974 1_2:+49202826 None:intergenic
TAAAGAGGAGCGACAAATAA+AGG 0.397492 1_2:-49202513 Msa0074550:three_prime_UTR
TGTATGTTCTGACACCAAAA+AGG 0.398154 1_2:-49202629 Msa0074550:CDS
TGATAGGCTCCTTTATTAGT+TGG 0.398232 1_2:-49215728 Msa0074550:intron
AAATAGGCTCCTCTATTAGT+TGG 0.398912 1_2:-49203399 Msa0074550:intron
TGAAGGAAACGTTGAAGCCT+TGG 0.402252 1_2:+49204682 None:intergenic
TGAGGGAAATGTTGCAGTAT+TGG 0.405098 1_2:+49217042 None:intergenic
GAGGGAAATGTTGCAGTATT+GGG 0.406174 1_2:+49217043 None:intergenic
ACCCTTGTCGTGAACATAAT+CGG 0.409497 1_2:+49217003 None:intergenic
AGAGAAGAAGATCGGCCTTC+CGG 0.409581 1_2:+49204133 None:intergenic
AACGTTTCCTTCAGGAATCA+AGG 0.411562 1_2:-49204672 Msa0074550:CDS
ATATCACAACCAACTAATAA+AGG 0.413000 1_2:+49215719 None:intergenic
TTATAGATGCAAACGACAAA+TGG 0.414952 1_2:-49203735 Msa0074550:CDS
TCGTTCTCATTTCAGCATAT+GGG 0.420766 1_2:-49215882 Msa0074550:CDS
TTCCCAACCTCAAGCATGTC+AGG 0.426549 1_2:+49215929 None:intergenic
GAAAGTTTAATCCGAGATAC+AGG 0.426792 1_2:-49205227 Msa0074550:intron
TCTTCATGTCCCAGTGATCC+AGG 0.429018 1_2:+49216838 None:intergenic
TAAACGTATGCCTGGATCAC+TGG 0.433474 1_2:-49216848 Msa0074550:CDS
AACATTTCCCTCAGGAATGA+AGG 0.436676 1_2:-49217032 Msa0074550:CDS
GTAGCACTCAACACAATCAT+TGG 0.438786 1_2:-49202697 Msa0074550:intron
CATAGGAAAGGCTTGAAGTT+GGG 0.440372 1_2:-49204632 Msa0074550:CDS
TCCTCTTTAGGACCAATGAA+TGG 0.444599 1_2:+49202527 None:intergenic
CTCTAGCTCATTATATTCAT+AGG 0.449054 1_2:-49204649 Msa0074550:CDS
TGATGATCAGATGGAATAGC+TGG 0.449121 1_2:-49205274 Msa0074550:intron
AGGACCAATGAATGGGTGAA+TGG 0.449575 1_2:+49202535 None:intergenic
GCCGACGCAATGGTGTCAAC+TGG 0.451138 1_2:-49205113 Msa0074550:CDS
AATAAATGGGCATCGTATGC+TGG 0.452885 1_2:-49216079 Msa0074550:CDS
ATCCTGACATGCTTGAGGTT+GGG 0.456983 1_2:-49215931 Msa0074550:CDS
GCAGACAAACTAGGAGTTCA+AGG 0.457937 1_2:-49215520 Msa0074550:intron
TTTCCAACTTCAAGCATGTC+AGG 0.457946 1_2:+49203567 None:intergenic
AAACGTATGCCTGGATCATT+GGG 0.461695 1_2:-49204492 Msa0074550:CDS
GACAAATGGGCATCTTATGC+TGG 0.464580 1_2:-49203721 Msa0074550:CDS
CCCATTCATTGGTCCTAAAG+AGG 0.466998 1_2:-49202528 Msa0074550:three_prime_UTR
GATCCTGACATGCTTGAAGT+TGG 0.469508 1_2:-49203570 Msa0074550:CDS
GGAAATAGTTGGAGAACAAC+AGG 0.470549 1_2:-49216286 Msa0074550:CDS
TTGGGGATCTACTCAGATGC+TGG 0.473654 1_2:-49216974 Msa0074550:CDS
TAATGCCCAAATGCTAAAAT+GGG 0.473655 1_2:+49203515 None:intergenic
GGAAATAGTTGGAGAACAAC+AGG 0.473859 1_2:-49203978 Msa0074550:CDS
TCACGACAAGGGTTTAAAGT+TGG 0.475337 1_2:-49216993 Msa0074550:CDS
AGCGGATTCAAACAATAAAT+GGG 0.476529 1_2:-49216092 Msa0074550:CDS
GACATGCTTGAAGTTGGAAA+TGG 0.481080 1_2:-49203564 Msa0074550:CDS
TTGGGAGTTTATTCAGATGC+CGG 0.485209 1_2:-49204614 Msa0074550:CDS
CAGCATATGGGCTTTAGCTA+AGG 0.488753 1_2:-49215870 Msa0074550:intron
TTTGTTATTGCAGACAAACT+AGG 0.489482 1_2:-49215529 Msa0074550:intron
TATATGTTGCAAAATGGACT+TGG 0.490268 1_2:-49206642 Msa0074550:CDS
GATCCTGACATGCTTGAGGT+TGG 0.493056 1_2:-49215932 Msa0074550:CDS
TATGATAATTGTGAAAATAA+CGG 0.494743 1_2:-49204303 Msa0074550:CDS
ATGGGAAGACCCAGCAACAT+GGG 0.494903 1_2:-49216320 Msa0074550:CDS
AAGGCTTCAACGTTTCCTTC+AGG 0.495513 1_2:-49204680 Msa0074550:CDS
GTTGGTTATTAGTTCATATG+TGG 0.497210 1_2:+49215679 None:intergenic
TATAGATGCAAACGACAAAT+GGG 0.498323 1_2:-49203734 Msa0074550:CDS
ACTTGTAGTAAACGTATGCC+TGG 0.499229 1_2:-49216856 Msa0074550:CDS
TCTTCTTCTCAATGTGTGAA+TGG 0.499960 1_2:-49216433 Msa0074550:intron
TCATAGGAAAGGCTTGAAGT+TGG 0.501081 1_2:-49204633 Msa0074550:CDS
GAAGGAAACGTTGAAGCCTT+GGG 0.511297 1_2:+49204683 None:intergenic
ATATTGAAGATAATTGGAAT+AGG 0.511959 1_2:-49216261 Msa0074550:intron
TAGCATTTGGGCATTAGCTA+AGG 0.514228 1_2:-49203508 Msa0074550:intron
ATGGGAAGATCCTGCAACGT+GGG 0.517774 1_2:-49204012 Msa0074550:CDS
TAATTACCATTCCATCCTCC+AGG 0.520204 1_2:+49216055 None:intergenic
AGGCAACAATAATTGCATCT+TGG 0.520762 1_2:-49215037 Msa0074550:CDS
ATTTCATGTCCCAATGATCC+AGG 0.521509 1_2:+49204483 None:intergenic
AATAAAGCTTCACTCATTGG+TGG 0.521866 1_2:+49204161 None:intergenic
CCAAAAGTGTGGGAAATAGT+TGG 0.526021 1_2:-49203989 Msa0074550:CDS
ACTTGTAGTAAACGTATGCC+TGG 0.526377 1_2:-49204501 Msa0074550:CDS
ATGCAACAGTTACCGCGTCT+TGG 0.528322 1_2:-49202860 Msa0074550:CDS
TTAAGGCTTCACTCATTGGC+GGG 0.529204 1_2:+49216474 None:intergenic
TACTGCAATAACTTCCGAGT+TGG 0.529388 1_2:+49215661 None:intergenic
GATGGGAAGACCCAGCAACA+TGG 0.530363 1_2:-49216321 Msa0074550:CDS
CCTCTTTAGGACCAATGAAT+GGG 0.532659 1_2:+49202528 None:intergenic
AAGGTCTAAGCCCTAAAGAA+AGG 0.535262 1_2:-49216601 Msa0074550:intron
ACTTGGACGTACTCCTCCCA+TGG 0.536006 1_2:-49206625 Msa0074550:CDS
ATATTACATCCAACTAATAG+AGG 0.536794 1_2:+49203390 None:intergenic
ACGACAAGGGTTTAAAGTTG+GGG 0.537512 1_2:-49216991 Msa0074550:CDS
ACGGAATAAGCGTTCGCGAA+AGG 0.537756 1_2:-49204284 Msa0074550:intron
CGTATGCTGGACCTGGAGGA+TGG 0.538221 1_2:-49216066 Msa0074550:CDS
TGGGAGTTTATTCAGATGCC+GGG 0.538487 1_2:-49204613 Msa0074550:intron
TCTTCTTCTCTATGTGTGAA+TGG 0.540517 1_2:-49204121 Msa0074550:intron
ATTAAGGCTTCACTCATTGG+CGG 0.541238 1_2:+49216473 None:intergenic
CTTAACATTCTTCTCTAGAG+TGG 0.541319 1_2:+49206668 None:intergenic
TGTTGATGCAAGAGATCTAT+GGG 0.541350 1_2:-49214985 Msa0074550:CDS
TAATTACCATTCCATCCTCC+AGG 0.541589 1_2:+49203697 None:intergenic
GTTGCTTATCAATTCATATG+TGG 0.544672 1_2:+49203350 None:intergenic
CTTATGCTGGACCTGGAGGA+TGG 0.545149 1_2:-49203708 Msa0074550:CDS
TGGGCATCTTATGCTGGACC+TGG 0.550800 1_2:-49203715 Msa0074550:CDS
AAGCGAGTAGCTGTAGATGA+TGG 0.552009 1_2:+49206720 None:intergenic
TGCAACGTGGGCCAAAAGTG+TGG 0.554880 1_2:-49204000 Msa0074550:CDS
CCTATTGCAGTAAAATCAAG+TGG 0.558926 1_2:+49202392 None:intergenic
AAGCTCTAGCTAGCACAAGA+AGG 0.559064 1_2:-49202335 Msa0074550:three_prime_UTR
TGATAATGATACCTGTATCT+CGG 0.559350 1_2:+49205216 None:intergenic
GACATGCTTGAGGTTGGGAA+TGG 0.559763 1_2:-49215926 Msa0074550:CDS
TGGGCATCGTATGCTGGACC+TGG 0.560426 1_2:-49216073 Msa0074550:CDS
TATTATTTCAGCCGACGCAA+TGG 0.564004 1_2:-49205123 Msa0074550:intron
GCTCATTATATTCATAGGAA+AGG 0.565444 1_2:-49204644 Msa0074550:CDS
TGGATGTAATATTCAAGCAA+TGG 0.566327 1_2:-49203379 Msa0074550:CDS
ATTGCATCTTGGTCTGACAT+AGG 0.566385 1_2:-49215026 Msa0074550:CDS
TGGGGATCTACTCAGATGCT+GGG 0.569882 1_2:-49216973 Msa0074550:intron
AAACGTATGCCTGGATCACT+GGG 0.570234 1_2:-49216847 Msa0074550:CDS
GCCGATTATGTTCACGACAA+GGG 0.574231 1_2:-49217004 Msa0074550:CDS
AGTGAAGCTTTATTAAACTC+CGG 0.574235 1_2:-49204152 Msa0074550:CDS
TTAGGGGAATATGGTTCCCA+AGG 0.579443 1_2:-49204699 Msa0074550:intron
CTTGGACGTACTCCTCCCAT+GGG 0.579757 1_2:-49206624 Msa0074550:CDS
CTACGGTGACAGGTATGGGC+AGG 0.580772 1_2:-49202936 Msa0074550:intron
GCCAGTTGACACCATTGCGT+CGG 0.584197 1_2:+49205112 None:intergenic
ATTAGATCCTGACATGCTTG+AGG 0.584939 1_2:-49215936 Msa0074550:intron
ACCGCGTCTTGGTCTGACAT+AGG 0.589906 1_2:-49202849 Msa0074550:CDS
ATGCTTGAGGTTGGGAATGG+AGG 0.591259 1_2:-49215923 Msa0074550:CDS
GGAACTTAATCGAGACTCAA+AGG 0.593389 1_2:-49204914 Msa0074550:intron
AATACTGCAACATTTCCCTC+AGG 0.594240 1_2:-49217040 Msa0074550:CDS
ATGGAATAGGAGCTCAACAA+AGG 0.594956 1_2:-49215057 Msa0074550:CDS
CTTCTCTAGAGTGGACACAT+TGG 0.595085 1_2:+49206677 None:intergenic
GCTGGACCTGGAGGATGGAA+TGG 0.595925 1_2:-49216061 Msa0074550:intron
ATATAGAAGATAATTGGAAG+AGG 0.597307 1_2:-49203953 Msa0074550:intron
CCCTAGCATGACTTCTATAG+CGG 0.600037 1_2:-49216110 Msa0074550:intron
GCTGGACCTGGAGGATGGAA+TGG 0.600529 1_2:-49203703 Msa0074550:intron
TGGTTGTGATATTCGTGCAA+TGG 0.603010 1_2:-49215708 Msa0074550:CDS
GCAACGTGGGCCAAAAGTGT+GGG 0.604665 1_2:-49203999 Msa0074550:CDS
AGCCGATTATGTTCACGACA+AGG 0.606759 1_2:-49217005 Msa0074550:CDS
GGCTAAAGCCTTCATTCCTG+AGG 0.608823 1_2:+49217024 None:intergenic
AAGCTTTATTAAACTCCGGA+AGG 0.609339 1_2:-49204148 Msa0074550:CDS
AGGTCCTCTAAGTGAAAACA+AGG 0.615653 1_2:-49215093 Msa0074550:CDS
GCTAGAGCCTTGATTCCTGA+AGG 0.622037 1_2:+49204665 None:intergenic
ATGAGGGTAGCTTACCCCAT+GGG 0.623626 1_2:+49206609 None:intergenic
TATGATAATTGTGAAAACAA+AGG 0.625517 1_2:-49216620 Msa0074550:CDS
ATGCTTGAAGTTGGAAATGG+AGG 0.629089 1_2:-49203561 Msa0074550:CDS
GCTAAAGCCTTCATTCCTGA+GGG 0.630069 1_2:+49217025 None:intergenic
TCACACATAGAGAAGAAGAT+CGG 0.630428 1_2:+49204125 None:intergenic
AAGCCTTAATGAAATCTGGA+AGG 0.632024 1_2:-49216460 Msa0074550:CDS
GATGGGAAGATCCTGCAACG+TGG 0.636522 1_2:-49204013 Msa0074550:CDS
TAGATCTCTTGCATCAACAA+TGG 0.642957 1_2:+49214989 None:intergenic
GAAGTTATTGCAGTAAACCA+AGG 0.645190 1_2:-49215653 Msa0074550:intron
GCATCTTATGCTGGACCTGG+AGG 0.645529 1_2:-49203712 Msa0074550:CDS
AGCATGAGAATCTATTTCAG+CGG 0.658536 1_2:+49214840 None:intergenic
ATATGAACTAATAACCAACT+CGG 0.665369 1_2:-49215675 Msa0074550:CDS
ATTTGTACCCTAAAGCAGCA+AGG 0.672262 1_2:+49205090 None:intergenic
AGGGTAGCTTACCCCATGGG+AGG 0.673038 1_2:+49206612 None:intergenic
GCCTATGTCAGACCAAGACG+CGG 0.688023 1_2:+49202848 None:intergenic
GCATCGTATGCTGGACCTGG+AGG 0.696296 1_2:-49216070 Msa0074550:CDS
TGATGCAAGAGATTTATGGG+AGG 0.716729 1_2:-49202805 Msa0074550:intron
ATGGGCACGATATTCCTCTG+TGG 0.732691 1_2:+49203533 None:intergenic
AAATGGAGGCATGACCACAG+AGG 0.748734 1_2:-49203547 Msa0074550:CDS
TGATGCAAGAGATCTATGGG+AGG 0.758189 1_2:-49214982 Msa0074550:intron
TTGGACGTACTCCTCCCATG+GGG 0.779061 1_2:-49206623 Msa0074550:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATCAATATATAACAAAAA+TGG + chr1_2:49203194-49203213 None:intergenic 10.0%
!! TTAAATATAATGAAATATGT+TGG + chr1_2:49203991-49204010 None:intergenic 10.0%
!!! TATAGATAAATGTTTTATAA+TGG - chr1_2:49209276-49209295 Msa0074550:intron 10.0%
!!! ATAGATAAATGTTTTATAAT+GGG - chr1_2:49209277-49209296 Msa0074550:intron 10.0%
!!! AGAATATTAAATTTTTCATT+TGG + chr1_2:49210037-49210056 None:intergenic 10.0%
!!! CTTTTTGAATAAATAATTTA+AGG + chr1_2:49211160-49211179 None:intergenic 10.0%
!!! ATTTTAATCTTTAATGAAAA+AGG - chr1_2:49211834-49211853 Msa0074550:intron 10.0%
!! AAAAATAAATACATTCATAA+TGG + chr1_2:49212052-49212071 None:intergenic 10.0%
!!! TTATGAATGTATTTATTTTT+AGG - chr1_2:49212052-49212071 Msa0074550:intron 10.0%
!!! CATTTATATCATTTTTATTT+TGG + chr1_2:49212232-49212251 None:intergenic 10.0%
!! CAAAATAAAAATGATATAAA+TGG - chr1_2:49212230-49212249 Msa0074550:intron 10.0%
!! TATAGAAACTAAAAAAAAAT+TGG + chr1_2:49212823-49212842 None:intergenic 10.0%
!!! TAACTTTTTAAAAAAAGAAA+AGG - chr1_2:49213316-49213335 Msa0074550:intron 10.0%
!!! AAAATTATGTTTTTTATTAG+TGG + chr1_2:49213681-49213700 None:intergenic 10.0%
!!! AAAATTATGTTTTTTATTAG+TGG + chr1_2:49213681-49213700 None:intergenic 10.0%
!!! TGGTTAATTTTATTTTAAAA+GGG + chr1_2:49213753-49213772 None:intergenic 10.0%
!!! ATGGTTAATTTTATTTTAAA+AGG + chr1_2:49213754-49213773 None:intergenic 10.0%
!! TATATAAATTGAAAATTCTA+TGG + chr1_2:49213773-49213792 None:intergenic 10.0%
!!! AATTATTCTTTATTCTTTTA+TGG - chr1_2:49214354-49214373 Msa0074550:intron 10.0%
!! AAGAAATTAAACAAATAAAT+GGG + chr1_2:49214527-49214546 None:intergenic 10.0%
!! AGAAAAATTTAAATCAATAT+TGG + chr1_2:49215034-49215053 None:intergenic 10.0%
!!! ATTGATTTAAATTTTTCTTT+AGG - chr1_2:49215036-49215055 Msa0074550:CDS 10.0%
!!! TTGATTTAAATTTTTCTTTA+GGG - chr1_2:49215037-49215056 Msa0074550:CDS 10.0%
!! AAACATTGAAATATAAAAAT+AGG + chr1_2:49215559-49215578 None:intergenic 10.0%
!!! CTGATTTAAATTTTTCTTTA+GGG - chr1_2:49202720-49202739 Msa0074550:intron 15.0%
!! TGACATTATATAAGAATTAT+TGG + chr1_2:49202865-49202884 None:intergenic 15.0%
!! TGTTTCACAAAATTATTTAA+CGG + chr1_2:49203033-49203052 None:intergenic 15.0%
!!! TAAATAATTTTGTGAAACAT+AGG - chr1_2:49203034-49203053 Msa0074550:intron 15.0%
!!! AAATAATTTTGTGAAACATA+GGG - chr1_2:49203035-49203054 Msa0074550:intron 15.0%
!!! ACTAATACTAAACTATTTTT+AGG - chr1_2:49204111-49204130 Msa0074550:intron 15.0%
!!! GAAATTTTCTTAATATAGAT+AGG - chr1_2:49204241-49204260 Msa0074550:intron 15.0%
!! TAAATAATACTATGCTTAAT+TGG + chr1_2:49204777-49204796 None:intergenic 15.0%
!! AAATTGAAAAAGAGTTTATA+TGG + chr1_2:49207064-49207083 None:intergenic 15.0%
!!! TCTTAAATCTTAAATCATTT+TGG - chr1_2:49208750-49208769 Msa0074550:intron 15.0%
!!! GTATTTTTGACTTTTAAAAT+TGG + chr1_2:49209027-49209046 None:intergenic 15.0%
!! TAAAATGTCATAAACATTAT+TGG - chr1_2:49209190-49209209 Msa0074550:intron 15.0%
!!! ACATCACATATTTTTTTTTA+AGG + chr1_2:49210917-49210936 None:intergenic 15.0%
!! ATAATTTATGTACTTGATTT+AGG - chr1_2:49210985-49211004 Msa0074550:intron 15.0%
!! AATAATTTAAGGATATTCAT+TGG + chr1_2:49211149-49211168 None:intergenic 15.0%
!! AATTTATGTCAATTGTTAAT+AGG - chr1_2:49211519-49211538 Msa0074550:intron 15.0%
!!! TAATATTTTAATCATTTGTC+CGG + chr1_2:49211654-49211673 None:intergenic 15.0%
!! TAATATGGATATAAATAAAG+AGG + chr1_2:49211994-49212013 None:intergenic 15.0%
!!! TTAAATTTTGTTGTACATAT+TGG - chr1_2:49212177-49212196 Msa0074550:intron 15.0%
!!! ACTTTTATTGTTATTCAAAA+TGG + chr1_2:49212389-49212408 None:intergenic 15.0%
!!! AATGTTTTAAGAAACAAAAT+CGG - chr1_2:49212878-49212897 Msa0074550:intron 15.0%
!! TATTATAATTTAAATCTACG+TGG - chr1_2:49213009-49213028 Msa0074550:intron 15.0%
!!! TTTTTCATGAAAATAATTTG+AGG + chr1_2:49213373-49213392 None:intergenic 15.0%
!! AAAAAAAAAGCAAAGAAATA+TGG - chr1_2:49213505-49213524 Msa0074550:intron 15.0%
!! CTATAATTTGAAAAATGAAT+GGG + chr1_2:49213548-49213567 None:intergenic 15.0%
!! TCTATAATTTGAAAAATGAA+TGG + chr1_2:49213549-49213568 None:intergenic 15.0%
!!! ATGAAATTGGTTTTTTATTA+AGG - chr1_2:49213884-49213903 Msa0074550:intron 15.0%
!!! ATTTTTTTTAGATGATTGTT+GGG - chr1_2:49214441-49214460 Msa0074550:intron 15.0%
!! AGAAATTAAACAAATAAATG+GGG + chr1_2:49214526-49214545 None:intergenic 15.0%
!! GAAGAAATTAAACAAATAAA+TGG + chr1_2:49214528-49214547 None:intergenic 15.0%
!! TATATCATATATATAATCCT+AGG - chr1_2:49215001-49215020 Msa0074550:CDS 15.0%
!! TATGATAATTGTGAAAATAA+CGG - chr1_2:49215076-49215095 Msa0074550:CDS 15.0%
!!! TTAATTCTTTTCTAAAATGA+AGG - chr1_2:49215342-49215361 Msa0074550:intron 15.0%
!!! TAATTCTTTTCTAAAATGAA+GGG - chr1_2:49215343-49215362 Msa0074550:intron 15.0%
!! TTGAAATATAAAAATAGGAA+AGG + chr1_2:49215554-49215573 None:intergenic 15.0%
!! TCAAACAGAATAAAATATAA+AGG + chr1_2:49216238-49216257 None:intergenic 15.0%
!! TTGAAGTATGAAAAAAAATT+AGG + chr1_2:49216289-49216308 None:intergenic 15.0%
!! CCTAAAGAAAAATTTAAATC+AGG + chr1_2:49202722-49202741 None:intergenic 20.0%
!!! CCTGATTTAAATTTTTCTTT+AGG - chr1_2:49202719-49202738 Msa0074550:intron 20.0%
!! TATGATAATTGTGAAAACAA+AGG - chr1_2:49202759-49202778 Msa0074550:intron 20.0%
!! TGATTAAATACCTTTCTTTA+GGG + chr1_2:49202791-49202810 None:intergenic 20.0%
!! TTGATTAAATACCTTTCTTT+AGG + chr1_2:49202792-49202811 None:intergenic 20.0%
!!! AATAATTTTGTGAAACATAG+GGG - chr1_2:49203036-49203055 Msa0074550:intron 20.0%
!! ATATTGAAGATAATTGGAAT+AGG - chr1_2:49203118-49203137 Msa0074550:intron 20.0%
!! TAAGGAATCAATGAAAAAAA+CGG - chr1_2:49203141-49203160 Msa0074550:intron 20.0%
!! AAAATAATTTGATCACAAGA+TGG + chr1_2:49203242-49203261 None:intergenic 20.0%
!!! AAAAAGAAACTCTTTTACTA+GGG + chr1_2:49203358-49203377 None:intergenic 20.0%
!!! TAAAAAGAAACTCTTTTACT+AGG + chr1_2:49203359-49203378 None:intergenic 20.0%
!! CAATATTCTCTAAATTTCAA+TGG + chr1_2:49203395-49203414 None:intergenic 20.0%
!!! TTCTTTTTTTATCTATACCT+TGG + chr1_2:49203746-49203765 None:intergenic 20.0%
!! ATTTCTTCTATATGTCAATA+AGG - chr1_2:49203797-49203816 Msa0074550:intron 20.0%
!! AGTGAAAAGTAATAATGATT+TGG - chr1_2:49203888-49203907 Msa0074550:intron 20.0%
!!! TACAAACAATTTTGACTTTA+GGG + chr1_2:49204189-49204208 None:intergenic 20.0%
!!! ATACAAACAATTTTGACTTT+AGG + chr1_2:49204190-49204209 None:intergenic 20.0%
!! ATGAACTAAAGAACAATATA+AGG + chr1_2:49204443-49204462 None:intergenic 20.0%
!! TCATATATATGCTAGATTAA+TGG - chr1_2:49204663-49204682 Msa0074550:CDS 20.0%
!! CATATTTGGATATTTATCAA+GGG + chr1_2:49204836-49204855 None:intergenic 20.0%
!! ACATATTTGGATATTTATCA+AGG + chr1_2:49204837-49204856 None:intergenic 20.0%
!! ACATGTCAAAATAACATATT+TGG + chr1_2:49204850-49204869 None:intergenic 20.0%
!!! CTCAAATGTTTTGAATATTT+AGG + chr1_2:49205055-49205074 None:intergenic 20.0%
!! AAGTTTCAACTAACAAATAT+AGG - chr1_2:49205365-49205384 Msa0074550:intron 20.0%
!! AGTTTCAACTAACAAATATA+GGG - chr1_2:49205366-49205385 Msa0074550:intron 20.0%
!!! TTGATTCGTGAAATTTATTA+TGG - chr1_2:49205532-49205551 Msa0074550:intron 20.0%
!!! CTAAAATCAATTTTGTGTAA+CGG - chr1_2:49205751-49205770 Msa0074550:intron 20.0%
!! ATATTGATCAACATCTAAAA+AGG - chr1_2:49205825-49205844 Msa0074550:intron 20.0%
!! AGTTGTATCATTATGTTTAT+TGG + chr1_2:49205917-49205936 None:intergenic 20.0%
!! TTTAAATTGGAAGTAATCAA+GGG + chr1_2:49206266-49206285 None:intergenic 20.0%
!!! TTATGATATGTTTTCATGAT+GGG + chr1_2:49206411-49206430 None:intergenic 20.0%
!!! TTTATGATATGTTTTCATGA+TGG + chr1_2:49206412-49206431 None:intergenic 20.0%
!! AATCATATTTGATGAATTCA+AGG + chr1_2:49206870-49206889 None:intergenic 20.0%
!! ATATCAAATCATCAACATAT+AGG - chr1_2:49206906-49206925 Msa0074550:intron 20.0%
!!! ACTATAATTTTCCATTTGAT+AGG - chr1_2:49207850-49207869 Msa0074550:intron 20.0%
!! GAATAGAACTATAATGAATA+TGG + chr1_2:49208159-49208178 None:intergenic 20.0%
!!! AATAATTCAAGTTTATAGTG+AGG + chr1_2:49208609-49208628 None:intergenic 20.0%
!!! TGTATTTTATTGTGTTTTCT+TGG - chr1_2:49209386-49209405 Msa0074550:intron 20.0%
!! AAAACTAAACAAGAAAAAAG+AGG - chr1_2:49209418-49209437 Msa0074550:intron 20.0%
!! ATTTATATTAGATGCATCTA+CGG - chr1_2:49210858-49210877 Msa0074550:intron 20.0%
!!! TTATTCCTTATGTTTCTTTT+TGG - chr1_2:49211228-49211247 Msa0074550:intron 20.0%
!! CATTACATTAAGATATTGAA+AGG + chr1_2:49211267-49211286 None:intergenic 20.0%
!! AAATTAACTAATGTTGCATT+GGG + chr1_2:49211409-49211428 None:intergenic 20.0%
!! TAAATTAACTAATGTTGCAT+TGG + chr1_2:49211410-49211429 None:intergenic 20.0%
!! GTATATACAAAATTAATGTG+AGG + chr1_2:49211445-49211464 None:intergenic 20.0%
!! TTTATATCATAAATGCATAG+AGG + chr1_2:49211488-49211507 None:intergenic 20.0%
!! TTAATAGGAAGTTGTTAATA+TGG - chr1_2:49211534-49211553 Msa0074550:intron 20.0%
!!! TCAACTAGTTTTGATTAAAA+AGG - chr1_2:49211605-49211624 Msa0074550:intron 20.0%
!!! AATATTTTAATCATTTGTCC+GGG + chr1_2:49211653-49211672 None:intergenic 20.0%
!!! TCAAAATTTGCTATATTTTG+TGG + chr1_2:49211815-49211834 None:intergenic 20.0%
!! ATGAAACAGAAAATTTAGAT+CGG + chr1_2:49211870-49211889 None:intergenic 20.0%
!! ACATTAACATGAACATAAAA+TGG + chr1_2:49211908-49211927 None:intergenic 20.0%
!!! GACATTTTTTGAAGATAATA+TGG + chr1_2:49212009-49212028 None:intergenic 20.0%
!!! TTTTAGGTACTATATTTCTA+AGG - chr1_2:49212068-49212087 Msa0074550:intron 20.0%
!!! ATGTGTAGAAACTTTTAAAA+TGG - chr1_2:49212132-49212151 Msa0074550:intron 20.0%
!!! TGTGTAGAAACTTTTAAAAT+GGG - chr1_2:49212133-49212152 Msa0074550:intron 20.0%
!! AATAACAATAAAAGTCACAT+AGG - chr1_2:49212394-49212413 Msa0074550:intron 20.0%
!! TGAAAAATAGATAAGAATGA+GGG + chr1_2:49212789-49212808 None:intergenic 20.0%
!! ATGAAAAATAGATAAGAATG+AGG + chr1_2:49212790-49212809 None:intergenic 20.0%
!!! ATGTTTTAAGAAACAAAATC+GGG - chr1_2:49212879-49212898 Msa0074550:intron 20.0%
!! AATTATAGGAGTAATGATAA+TGG - chr1_2:49213188-49213207 Msa0074550:intron 20.0%
!!! AATTATTTTCATGAAAAACG+AGG - chr1_2:49213375-49213394 Msa0074550:intron 20.0%
!! GTCAAAGTGATTTATAATAT+AGG - chr1_2:49213798-49213817 Msa0074550:intron 20.0%
!! AAAGTGATTTATAATATAGG+TGG - chr1_2:49213801-49213820 Msa0074550:intron 20.0%
!! AAAAAACCAATTTCATCATT+CGG + chr1_2:49213880-49213899 None:intergenic 20.0%
!!! TTTTTTATTAAGGAGAATGA+TGG - chr1_2:49213894-49213913 Msa0074550:intron 20.0%
!! ATCTAAGTTGTAAACATAAT+AGG + chr1_2:49214202-49214221 None:intergenic 20.0%
!! GGGTACAAATATATTAATTT+AGG - chr1_2:49214302-49214321 Msa0074550:intron 20.0%
!!! GATTTTTTTTAGATGATTGT+TGG - chr1_2:49214440-49214459 Msa0074550:intron 20.0%
!! GAAATTAAACAAATAAATGG+GGG + chr1_2:49214525-49214544 None:intergenic 20.0%
!! TTTCGTATGCATTAAAAATT+AGG - chr1_2:49215192-49215211 Msa0074550:intron 20.0%
!!! AATTCTTTTCTAAAATGAAG+GGG - chr1_2:49215344-49215363 Msa0074550:intron 20.0%
!!! TAGATTTTGCTATAAATGTA+AGG + chr1_2:49215749-49215768 None:intergenic 20.0%
!! TTATAGCAAAATCTAGTATT+AGG - chr1_2:49215754-49215773 Msa0074550:intron 20.0%
!! TTATATGTGTAACTGTTATT+TGG - chr1_2:49215780-49215799 Msa0074550:intron 20.0%
!!! CTATTTGTATTGGTTTAAAT+AGG - chr1_2:49215964-49215983 Msa0074550:intron 20.0%
!!! TAAAAATCATATGCTTCTTT+TGG - chr1_2:49216136-49216155 Msa0074550:intron 20.0%
!! TCATACTTCAATTAAAAAGA+TGG - chr1_2:49216298-49216317 Msa0074550:CDS 20.0%
! TAAAACCTATTTGCATTTGA+AGG + chr1_2:49202818-49202837 None:intergenic 25.0%
! ATTTAACGGCAAATAGAAAA+TGG + chr1_2:49203019-49203038 None:intergenic 25.0%
!! ATCAAAAACAATTTGCTCAA+AGG + chr1_2:49203600-49203619 None:intergenic 25.0%
!! GTTCTTTTGTATATACTGAT+AGG - chr1_2:49203635-49203654 Msa0074550:intron 25.0%
! ATATCACAACCAACTAATAA+AGG + chr1_2:49203663-49203682 None:intergenic 25.0%
! ATATGAACTAATAACCAACT+CGG - chr1_2:49203704-49203723 Msa0074550:CDS 25.0%
!! GAAAAGTAATAATGATTTGG+AGG - chr1_2:49203891-49203910 Msa0074550:intron 25.0%
! ATAATGAAATATGTTGGTGT+CGG + chr1_2:49203985-49204004 None:intergenic 25.0%
!!! ATAAGCACTGAATACAATAA+TGG + chr1_2:49204061-49204080 None:intergenic 25.0%
!!! ACAAACAATTTTGACTTTAG+GGG + chr1_2:49204188-49204207 None:intergenic 25.0%
! TCCTTATATATATGTTCTCA+AGG - chr1_2:49204219-49204238 Msa0074550:intron 25.0%
! TCCTTGAGAACATATATATA+AGG + chr1_2:49204223-49204242 None:intergenic 25.0%
!!! TAGCAGTTATTTTATGGAAT+AGG - chr1_2:49204309-49204328 Msa0074550:CDS 25.0%
!!! TTTGTAATTTTGATGCATTG+AGG - chr1_2:49204697-49204716 Msa0074550:CDS 25.0%
! GATGTTGAGATAAACATATA+CGG + chr1_2:49204885-49204904 None:intergenic 25.0%
! AAGAAAATGAAAAAACCGAA+TGG + chr1_2:49205295-49205314 None:intergenic 25.0%
! TTTGTTAGTTGAAACTTCAT+GGG + chr1_2:49205362-49205381 None:intergenic 25.0%
!! ATTTGTTAGTTGAAACTTCA+TGG + chr1_2:49205363-49205382 None:intergenic 25.0%
! GAGAATATGAAATTCTAGAT+AGG - chr1_2:49205414-49205433 Msa0074550:intron 25.0%
! TTGTTATAAGTTCAGTTTAG+GGG + chr1_2:49205987-49206006 None:intergenic 25.0%
!! CTTGTTATAAGTTCAGTTTA+GGG + chr1_2:49205988-49206007 None:intergenic 25.0%
!!! ACTTGTTATAAGTTCAGTTT+AGG + chr1_2:49205989-49206008 None:intergenic 25.0%
! TTAAATTGGAAGTAATCAAG+GGG + chr1_2:49206265-49206284 None:intergenic 25.0%
! GTTTAAATTGGAAGTAATCA+AGG + chr1_2:49206267-49206286 None:intergenic 25.0%
! AGAAGGATCTTAGTTTAAAT+TGG + chr1_2:49206279-49206298 None:intergenic 25.0%
! AAAGAAATCTTGCAAAGATT+TGG + chr1_2:49206772-49206791 None:intergenic 25.0%
!! ACAAACATTGTATTTTCATG+AGG - chr1_2:49206965-49206984 Msa0074550:intron 25.0%
! AAGATCAAATACAATGAGAA+TGG + chr1_2:49207343-49207362 None:intergenic 25.0%
! AATGATGAGAATTAGGATTT+GGG + chr1_2:49207616-49207635 None:intergenic 25.0%
! AAATAGCAATGATGAGAATT+AGG + chr1_2:49207623-49207642 None:intergenic 25.0%
! ATTTGAAGAATCCAAACAAT+GGG + chr1_2:49207815-49207834 None:intergenic 25.0%
! GAACTATAATGAATATGGTT+AGG + chr1_2:49208154-49208173 None:intergenic 25.0%
! AAAGAGAAAACAACACATAA+AGG + chr1_2:49208248-49208267 None:intergenic 25.0%
!! AAGGTTTTCCATGAATTAAA+AGG + chr1_2:49208494-49208513 None:intergenic 25.0%
! AAGAATAATCAGTTGATCAT+AGG + chr1_2:49208566-49208585 None:intergenic 25.0%
! TGATCAACTGATTATTCTTT+AGG - chr1_2:49208567-49208586 Msa0074550:intron 25.0%
! CTCAAAATTAATTCTTGTCA+GGG + chr1_2:49208662-49208681 None:intergenic 25.0%
! ACTCAAAATTAATTCTTGTC+AGG + chr1_2:49208663-49208682 None:intergenic 25.0%
! TTATGAAAATCTTGACATTG+AGG + chr1_2:49208727-49208746 None:intergenic 25.0%
!!! CATTATTGGCTTTATGAAAT+TGG - chr1_2:49209204-49209223 Msa0074550:intron 25.0%
!! CATGTTTTCTTCATTCTTTA+TGG + chr1_2:49209249-49209268 None:intergenic 25.0%
! AGAATTAAACAAGAAGAACA+AGG - chr1_2:49209461-49209480 Msa0074550:intron 25.0%
! GAATTAAACAAGAAGAACAA+GGG - chr1_2:49209462-49209481 Msa0074550:intron 25.0%
! TACAACTACCATTAACATTT+AGG - chr1_2:49209578-49209597 Msa0074550:intron 25.0%
!!! ATATATTTCTAGCTTGCATT+TGG + chr1_2:49209782-49209801 None:intergenic 25.0%
!!! CTCTTGTTTTGTTGAAAAAT+AGG + chr1_2:49209989-49210008 None:intergenic 25.0%
!!! TTTTTCAACAAAACAAGAGT+AGG - chr1_2:49209990-49210009 Msa0074550:intron 25.0%
! GAATATATAATGCTTCTTCA+GGG + chr1_2:49210136-49210155 None:intergenic 25.0%
!! ATTTAGAAGCATAACTTAGA+TGG + chr1_2:49210158-49210177 None:intergenic 25.0%
! AGTTATGCTTCTAAATGAAA+CGG - chr1_2:49210162-49210181 Msa0074550:intron 25.0%
! AACAACCAAATACATCATTT+GGG + chr1_2:49210433-49210452 None:intergenic 25.0%
! AAACAACCAAATACATCATT+TGG + chr1_2:49210434-49210453 None:intergenic 25.0%
! TTCGAAAAATGATGTAAATG+TGG + chr1_2:49210836-49210855 None:intergenic 25.0%
!! AGTCAACTTTCTCTTTTAAA+AGG - chr1_2:49211047-49211066 Msa0074550:intron 25.0%
! GCACTTCTAACAATTAATAT+CGG + chr1_2:49211111-49211130 None:intergenic 25.0%
!!! ACATAATTTTATGTTCTGGA+TGG + chr1_2:49211201-49211220 None:intergenic 25.0%
!! CGTAACATAATTTTATGTTC+TGG + chr1_2:49211205-49211224 None:intergenic 25.0%
! AATTAACTAATGTTGCATTG+GGG + chr1_2:49211408-49211427 None:intergenic 25.0%
! AATTAATGTGAGGTTAAACT+TGG + chr1_2:49211435-49211454 None:intergenic 25.0%
! ATTACATTTATCCATTACAG+AGG - chr1_2:49211573-49211592 Msa0074550:intron 25.0%
!!! AGTTTTGATTAAAAAGGAGT+TGG - chr1_2:49211611-49211630 Msa0074550:intron 25.0%
! GAGTACACATAATAAATGAA+GGG + chr1_2:49211782-49211801 None:intergenic 25.0%
! TGAGTACACATAATAAATGA+AGG + chr1_2:49211783-49211802 None:intergenic 25.0%
! TGAACATAAAATGGTCATTA+GGG + chr1_2:49211899-49211918 None:intergenic 25.0%
! ATGAACATAAAATGGTCATT+AGG + chr1_2:49211900-49211919 None:intergenic 25.0%
! TGTTATGATCACTTTATGTT+CGG - chr1_2:49211930-49211949 Msa0074550:intron 25.0%
! TTGTACATATTGGAACAAAT+TGG - chr1_2:49212187-49212206 Msa0074550:intron 25.0%
! ATGTATGTATTGTTATCATG+TGG - chr1_2:49212270-49212289 Msa0074550:intron 25.0%
! TTTCATTCATATAGATCTAG+TGG - chr1_2:49212320-49212339 Msa0074550:intron 25.0%
!! GACAATTGATGATATAGATT+GGG - chr1_2:49212342-49212361 Msa0074550:intron 25.0%
!! TTCAAAATGGAATTCAGTTT+TGG + chr1_2:49212376-49212395 None:intergenic 25.0%
! ATTTGATGAATGGATGATAT+GGG + chr1_2:49212470-49212489 None:intergenic 25.0%
! AATTTGATGAATGGATGATA+TGG + chr1_2:49212471-49212490 None:intergenic 25.0%
! AAGAGTTATATGTTGCAAAA+TGG - chr1_2:49212731-49212750 Msa0074550:intron 25.0%
! TAGACTTACTATCAATTCAA+TGG + chr1_2:49213039-49213058 None:intergenic 25.0%
!! ATTGAATTGATAGTAAGTCT+AGG - chr1_2:49213038-49213057 Msa0074550:intron 25.0%
!! ACTTTCCTAAAGATTTCTTT+TGG - chr1_2:49213138-49213157 Msa0074550:intron 25.0%
!!! ATGGAGTACTGTTTTTTTTA+AGG + chr1_2:49213164-49213183 None:intergenic 25.0%
! TATCATTACTCCTATAATTC+AGG + chr1_2:49213187-49213206 None:intergenic 25.0%
!! TTGATTTTGTCCGTTAATAT+TGG - chr1_2:49213224-49213243 Msa0074550:intron 25.0%
! AAAAGAAAAGGAAAATTGCA+TGG - chr1_2:49213328-49213347 Msa0074550:intron 25.0%
! TTTGAGGAACAAATGTTATA+TGG + chr1_2:49213357-49213376 None:intergenic 25.0%
!!! GTTTTAACATTTTTTTCGCT+TGG + chr1_2:49213401-49213420 None:intergenic 25.0%
!!! TGTTTTTTATTAGTGGTATG+AGG + chr1_2:49213674-49213693 None:intergenic 25.0%
! AGATAGTATAAGATAAGATG+TGG - chr1_2:49213824-49213843 Msa0074550:intron 25.0%
! TTATACATATGATGATCAGA+TGG - chr1_2:49214096-49214115 Msa0074550:intron 25.0%
! TCAAAATCATATCATTGACA+TGG + chr1_2:49214422-49214441 None:intergenic 25.0%
!!! CAACAATCATAATTTTTCAG+AGG + chr1_2:49214633-49214652 None:intergenic 25.0%
! TTAACGCATTAAATTGTACT+TGG - chr1_2:49214791-49214810 Msa0074550:intron 25.0%
! TTTAATAAAGCTTCACTCAT+TGG + chr1_2:49215224-49215243 None:intergenic 25.0%
! ATATAGAAGATAATTGGAAG+AGG - chr1_2:49215426-49215445 Msa0074550:intron 25.0%
! GTTAAAAGAGACATTGTAAA+AGG + chr1_2:49215491-49215510 None:intergenic 25.0%
!! CTCTTTTAACAACATAATTG+AGG - chr1_2:49215501-49215520 Msa0074550:intron 25.0%
!! TGTCGTTTAACTATTTGTAT+TGG - chr1_2:49215954-49215973 Msa0074550:intron 25.0%
! ATATTACATCCAACTAATAG+AGG + chr1_2:49215992-49216011 None:intergenic 25.0%
! TTCAATTAAAAAGATGGATC+TGG - chr1_2:49216304-49216323 Msa0074550:CDS 25.0%
!!! TGCTACTTTGTTTTTACTAA+GGG + chr1_2:49216471-49216490 None:intergenic 25.0%
! TTTCACATAATCAAAACCTT+AGG + chr1_2:49216654-49216673 None:intergenic 25.0%
ATGCTAAAACATTTGCTTCT+TGG - chr1_2:49202569-49202588 Msa0074550:three_prime_UTR 30.0%
TGCTAAAACATTTGCTTCTT+GGG - chr1_2:49202570-49202589 Msa0074550:three_prime_UTR 30.0%
AATCTCCTTCAAATGCAAAT+AGG - chr1_2:49202810-49202829 Msa0074550:CDS 30.0%
! TGTCATACATTTTGCCAAAT+AGG - chr1_2:49202880-49202899 Msa0074550:CDS 30.0%
CAGGTGATATTGAAGATAAT+TGG - chr1_2:49203112-49203131 Msa0074550:intron 30.0%
GAAGATAATTGGAATAGGTA+AGG - chr1_2:49203123-49203142 Msa0074550:intron 30.0%
!! TAGCGGATTCAAACAATAAA+TGG - chr1_2:49203286-49203305 Msa0074550:intron 30.0%
! AGCGGATTCAAACAATAAAT+GGG - chr1_2:49203287-49203306 Msa0074550:intron 30.0%
! GAGTTTCTTTTTACATGTGA+TGG - chr1_2:49203366-49203385 Msa0074550:CDS 30.0%
ATGAAAACACTAGAAGTCAA+GGG + chr1_2:49203566-49203585 None:intergenic 30.0%
AATGAAAACACTAGAAGTCA+AGG + chr1_2:49203567-49203586 None:intergenic 30.0%
GTTGGTTATTAGTTCATATG+TGG + chr1_2:49203703-49203722 None:intergenic 30.0%
AGTTTGTCTGCAATAACAAA+AGG + chr1_2:49203850-49203869 None:intergenic 30.0%
!! TTTGTTATTGCAGACAAACT+AGG - chr1_2:49203850-49203869 Msa0074550:intron 30.0%
!! ACAAGGTAGCAGTTATTTTA+TGG - chr1_2:49204303-49204322 Msa0074550:CDS 30.0%
CTTTCAAATTGCATCAAGAA+GGG + chr1_2:49204754-49204773 None:intergenic 30.0%
TTTGTTTAGTGATTGAAACG+AGG + chr1_2:49205165-49205184 None:intergenic 30.0%
! TTTGAAGTGAACCATTATGA+TGG - chr1_2:49205390-49205409 Msa0074550:intron 30.0%
TCATATTCTCTCCATCATAA+TGG + chr1_2:49205404-49205423 None:intergenic 30.0%
TGAAATTCTAGATAGGAACA+AGG - chr1_2:49205421-49205440 Msa0074550:intron 30.0%
TTAGACATGAAGCTAGAAAT+TGG + chr1_2:49205663-49205682 None:intergenic 30.0%
CAGAATGTTACTAAACTCAA+AGG - chr1_2:49206057-49206076 Msa0074550:intron 30.0%
TTGTTCATCACAAGATCAAT+TGG + chr1_2:49206099-49206118 None:intergenic 30.0%
GTAGTGAAAAGAGTTACTAT+AGG - chr1_2:49206351-49206370 Msa0074550:intron 30.0%
TGGGATCAAAGATTATATCA+TGG + chr1_2:49206392-49206411 None:intergenic 30.0%
ATTCAGATTATGCAGAGATT+TGG + chr1_2:49206451-49206470 None:intergenic 30.0%
AATGTTTGAGAAGGGAAAAA+GGG + chr1_2:49206495-49206514 None:intergenic 30.0%
TAATGTTTGAGAAGGGAAAA+AGG + chr1_2:49206496-49206515 None:intergenic 30.0%
TATGGTCTAATGTTTGAGAA+GGG + chr1_2:49206503-49206522 None:intergenic 30.0%
! AACTACCATGTGAATTTTGT+TGG - chr1_2:49206562-49206581 Msa0074550:intron 30.0%
AAAGTCCAACAAAATTCACA+TGG + chr1_2:49206570-49206589 None:intergenic 30.0%
GAAATTAAGCAAGACAACAA+TGG + chr1_2:49206825-49206844 None:intergenic 30.0%
ACAATGTTTGTGAAATGTGA+TGG + chr1_2:49206956-49206975 None:intergenic 30.0%
TCAGAAAGGAAGAAAAGAAA+TGG + chr1_2:49207092-49207111 None:intergenic 30.0%
CAATCTTAAGGATATCAGAA+AGG + chr1_2:49207106-49207125 None:intergenic 30.0%
CTTTAACTGCTTGTAAAAGT+TGG + chr1_2:49207198-49207217 None:intergenic 30.0%
AAAGGATACTCTCAGAAATA+TGG + chr1_2:49207287-49207306 None:intergenic 30.0%
TGAAAAACACAAAGCAAGAT+TGG + chr1_2:49207314-49207333 None:intergenic 30.0%
CAAATACAATGAGAATGGTA+AGG + chr1_2:49207338-49207357 None:intergenic 30.0%
!! CAAACAAAATTGGTGTCAAA+TGG + chr1_2:49207372-49207391 None:intergenic 30.0%
TGAGATATGAACAAAGGATA+TGG + chr1_2:49207458-49207477 None:intergenic 30.0%
TAAGCATGAGATATGAACAA+AGG + chr1_2:49207464-49207483 None:intergenic 30.0%
ACAACTACTTCATATGTTGT+TGG - chr1_2:49207484-49207503 Msa0074550:intron 30.0%
AGCTGAATACAACAAGATTA+TGG - chr1_2:49207518-49207537 Msa0074550:intron 30.0%
ACATAATCATCTAGATATGC+AGG - chr1_2:49207571-49207590 Msa0074550:intron 30.0%
ATGATGAGAATTAGGATTTG+GGG + chr1_2:49207615-49207634 None:intergenic 30.0%
CAATGATGAGAATTAGGATT+TGG + chr1_2:49207617-49207636 None:intergenic 30.0%
! ACATTTTGCTCATCAATTTC+AGG - chr1_2:49207661-49207680 Msa0074550:intron 30.0%
TGCCTTTCATTATTTACTTC+AGG - chr1_2:49207685-49207704 Msa0074550:intron 30.0%
AGCCTGAAGTAAATAATGAA+AGG + chr1_2:49207690-49207709 None:intergenic 30.0%
CATTTGAAGAATCCAAACAA+TGG + chr1_2:49207816-49207835 None:intergenic 30.0%
AGTTGTATGATCCTATCAAA+TGG + chr1_2:49207864-49207883 None:intergenic 30.0%
AGATAATCTAAGGAAAAAGC+TGG + chr1_2:49207943-49207962 None:intergenic 30.0%
!! AGCTTTTTCCTTAGATTATC+TGG - chr1_2:49207942-49207961 Msa0074550:intron 30.0%
TTCATGTTCCAGATAATCTA+AGG + chr1_2:49207953-49207972 None:intergenic 30.0%
!! GTGCATCACTTTAGAATATT+TGG + chr1_2:49207990-49208009 None:intergenic 30.0%
ATGTTTCTTACAACAAGAGT+AGG - chr1_2:49208047-49208066 Msa0074550:intron 30.0%
TGTTTCTTACAACAAGAGTA+GGG - chr1_2:49208048-49208067 Msa0074550:intron 30.0%
ACTAACCAATTTACTACTTC+TGG - chr1_2:49208089-49208108 Msa0074550:intron 30.0%
TATGACCAGAAGTAGTAAAT+TGG + chr1_2:49208097-49208116 None:intergenic 30.0%
! ACTTCTGGTCATAATCTTTT+TGG - chr1_2:49208104-49208123 Msa0074550:intron 30.0%
ATACACCATTGACAAGTTTA+AGG - chr1_2:49208189-49208208 Msa0074550:intron 30.0%
GCTTAAAAGGATATGGTAAA+GGG + chr1_2:49208317-49208336 None:intergenic 30.0%
! AACTTTGGCTTAAAAGGATA+TGG + chr1_2:49208324-49208343 None:intergenic 30.0%
! CTTGAAAACTTTGGCTTAAA+AGG + chr1_2:49208330-49208349 None:intergenic 30.0%
!! TCATCAAGCCTTTTAATTCA+TGG - chr1_2:49208483-49208502 Msa0074550:intron 30.0%
ATTAATTCTTGTCAGGGAAA+GGG + chr1_2:49208656-49208675 None:intergenic 30.0%
AATTAATTCTTGTCAGGGAA+AGG + chr1_2:49208657-49208676 None:intergenic 30.0%
!!! GCTAACAAATTTTGAAGTCA+GGG + chr1_2:49208838-49208857 None:intergenic 30.0%
TTCTTACAGTTAAAGCTTTG+TGG + chr1_2:49209102-49209121 None:intergenic 30.0%
ATGAAATTGGACAAGAAGAT+AGG - chr1_2:49209217-49209236 Msa0074550:intron 30.0%
! ATTGTGTTTTCTTGGTACAT+TGG - chr1_2:49209394-49209413 Msa0074550:intron 30.0%
AGAATGGTCTTCAAATCATT+AGG - chr1_2:49209506-49209525 Msa0074550:intron 30.0%
GAATGGTCTTCAAATCATTA+GGG - chr1_2:49209507-49209526 Msa0074550:intron 30.0%
AATGGTCTTCAAATCATTAG+GGG - chr1_2:49209508-49209527 Msa0074550:intron 30.0%
TGTTCACTCCTAAATGTTAA+TGG + chr1_2:49209589-49209608 None:intergenic 30.0%
! AGTGAACAATTTTCTCTAGA+AGG - chr1_2:49209601-49209620 Msa0074550:intron 30.0%
! GTAACATGAATTTTCTTGAC+TGG + chr1_2:49209836-49209855 None:intergenic 30.0%
! ATGAATCTTTGGAAGACTTT+AGG + chr1_2:49209882-49209901 None:intergenic 30.0%
TAAAGTCTTCCAAAGATTCA+TGG - chr1_2:49209881-49209900 Msa0074550:intron 30.0%
! TCTAGAACATAAGTTAGAAG+TGG - chr1_2:49209956-49209975 Msa0074550:intron 30.0%
CACTTAACTCGATATAGATA+TGG + chr1_2:49210076-49210095 None:intergenic 30.0%
CATATCTATATCGAGTTAAG+TGG - chr1_2:49210074-49210093 Msa0074550:intron 30.0%
GGAATATATAATGCTTCTTC+AGG + chr1_2:49210137-49210156 None:intergenic 30.0%
! TCTAAATCAGTCGCAATTTT+TGG - chr1_2:49210240-49210259 Msa0074550:intron 30.0%
ATCTAAATGCTTAACACTTG+TGG + chr1_2:49210298-49210317 None:intergenic 30.0%
AGACATAAACCCTATTACTT+AGG - chr1_2:49210390-49210409 Msa0074550:intron 30.0%
!! TTTGGGCTTGATTTGTTATT+GGG + chr1_2:49210416-49210435 None:intergenic 30.0%
!! ATTTGGGCTTGATTTGTTAT+TGG + chr1_2:49210417-49210436 None:intergenic 30.0%
TGAAAATACGTTAGTTGAGT+AGG + chr1_2:49210755-49210774 None:intergenic 30.0%
GTGAATTGTCTCTTGTAAAT+AGG + chr1_2:49210949-49210968 None:intergenic 30.0%
GAGTACATGAAATGTAAGAA+AGG - chr1_2:49211078-49211097 Msa0074550:intron 30.0%
TTAATGTAATGCCCTTACTT+AGG - chr1_2:49211276-49211295 Msa0074550:intron 30.0%
AGCACTTAGTTAGAAACATA+AGG + chr1_2:49211332-49211351 None:intergenic 30.0%
ATTAACTAATGTTGCATTGG+GGG + chr1_2:49211407-49211426 None:intergenic 30.0%
GAACATAAAATGGTCATTAG+GGG + chr1_2:49211898-49211917 None:intergenic 30.0%
GTTATGATCACTTTATGTTC+GGG - chr1_2:49211931-49211950 Msa0074550:intron 30.0%
! GGACAATTGATGATATAGAT+TGG - chr1_2:49212341-49212360 Msa0074550:intron 30.0%
! AATTGATGATATAGATTGGG+TGG - chr1_2:49212345-49212364 Msa0074550:intron 30.0%
TGCAAATGCAATTTGATGAA+TGG + chr1_2:49212480-49212499 None:intergenic 30.0%
TTCATCAAATTGCATTTGCA+TGG - chr1_2:49212480-49212499 Msa0074550:intron 30.0%
TATATACTAGTGTTTGCTTC+AGG + chr1_2:49212515-49212534 None:intergenic 30.0%
CTAGTATATATATAGCACCA+TGG - chr1_2:49212525-49212544 Msa0074550:intron 30.0%
! TTGTATTTTGCATCCTTGTA+GGG - chr1_2:49212615-49212634 Msa0074550:intron 30.0%
! TATATGTTGCAAAATGGACT+TGG - chr1_2:49212737-49212756 Msa0074550:intron 30.0%
TTAAGAAACAAAATCGGGTA+TGG - chr1_2:49212884-49212903 Msa0074550:intron 30.0%
TAGTACGTAATTTATGTGCA+AGG - chr1_2:49212912-49212931 Msa0074550:intron 30.0%
TAAGGCCAAAAGAAATCTTT+AGG + chr1_2:49213146-49213165 None:intergenic 30.0%
ATTACTCCTATAATTCAGGA+TGG + chr1_2:49213183-49213202 None:intergenic 30.0%
! TATTAACGGACAAAATCAAG+TGG + chr1_2:49213223-49213242 None:intergenic 30.0%
GTGTGAAAGAAAAAGAAAGA+TGG + chr1_2:49213609-49213628 None:intergenic 30.0%
GATGTTCACAAAAGCAAAAT+GGG + chr1_2:49213853-49213872 None:intergenic 30.0%
AGATGTTCACAAAAGCAAAA+TGG + chr1_2:49213854-49213873 None:intergenic 30.0%
AGTATATATCTCCTCACTAT+GGG + chr1_2:49213925-49213944 None:intergenic 30.0%
AAGTATATATCTCCTCACTA+TGG + chr1_2:49213926-49213945 None:intergenic 30.0%
CATTGATATCACAACCAAAA+TGG + chr1_2:49214133-49214152 None:intergenic 30.0%
! TGATAATGATACCTGTATCT+CGG + chr1_2:49214166-49214185 None:intergenic 30.0%
GTTGTAAACATAATAGGTCT+GGG + chr1_2:49214196-49214215 None:intergenic 30.0%
AGTTGTAAACATAATAGGTC+TGG + chr1_2:49214197-49214216 None:intergenic 30.0%
ATATCATTGACATGGTAATC+TGG + chr1_2:49214414-49214433 None:intergenic 30.0%
!!! TTTTTTAGATGATTGTTGGG+CGG - chr1_2:49214444-49214463 Msa0074550:intron 30.0%
! CTTTTCCTTCGTTGTTTAAA+AGG - chr1_2:49214556-49214575 Msa0074550:intron 30.0%
! CTATACCTTTTAAACAACGA+AGG + chr1_2:49214564-49214583 None:intergenic 30.0%
! TGGTTTGTGACAATGATATT+AGG - chr1_2:49214662-49214681 Msa0074550:intron 30.0%
GGTTTGTGACAATGATATTA+GGG - chr1_2:49214663-49214682 Msa0074550:intron 30.0%
GTTTGTGACAATGATATTAG+GGG - chr1_2:49214664-49214683 Msa0074550:intron 30.0%
ACAATGATATTAGGGGAATA+TGG - chr1_2:49214671-49214690 Msa0074550:intron 30.0%
! CTCTAGCTCATTATATTCAT+AGG - chr1_2:49214730-49214749 Msa0074550:intron 30.0%
GCTCATTATATTCATAGGAA+AGG - chr1_2:49214735-49214754 Msa0074550:intron 30.0%
CAATTTAATGCGTTAATACC+CGG + chr1_2:49214787-49214806 None:intergenic 30.0%
! TCAATATTGGTTAACAACCT+AGG + chr1_2:49215021-49215040 None:intergenic 30.0%
!! CGCGAAAGGTATTTAATATA+TGG - chr1_2:49215109-49215128 Msa0074550:intron 30.0%
CATACGAAACATGTAAGTAT+TGG + chr1_2:49215181-49215200 None:intergenic 30.0%
!! AGTGAAGCTTTATTAAACTC+CGG - chr1_2:49215227-49215246 Msa0074550:intron 30.0%
!!! TTTTCTAAAATGAAGGGGAT+GGG - chr1_2:49215349-49215368 Msa0074550:intron 30.0%
AAATAGGAAAGGAATTCTTG+AGG + chr1_2:49215543-49215562 None:intergenic 30.0%
CTATAATAGAAGTCATACTG+AGG + chr1_2:49215630-49215649 None:intergenic 30.0%
TTATAGATGCAAACGACAAA+TGG - chr1_2:49215644-49215663 Msa0074550:intron 30.0%
TATAGATGCAAACGACAAAT+GGG - chr1_2:49215645-49215664 Msa0074550:intron 30.0%
!! TATGCAGAACATTTCTAGTA+AGG + chr1_2:49215713-49215732 None:intergenic 30.0%
TAATGCCCAAATGCTAAAAT+GGG + chr1_2:49215867-49215886 None:intergenic 30.0%
TGGATGTAATATTCAAGCAA+TGG - chr1_2:49216000-49216019 Msa0074550:intron 30.0%
GTTGCTTATCAATTCATATG+TGG + chr1_2:49216032-49216051 None:intergenic 30.0%
GAAGTTATTGCAGTAAATCA+AGG - chr1_2:49216055-49216074 Msa0074550:intron 30.0%
GAAAAGCAACAATGATTTAG+AGG - chr1_2:49216195-49216214 Msa0074550:intron 30.0%
AGAGTTTCTTACAGCTTATA+AGG - chr1_2:49216261-49216280 Msa0074550:intron 30.0%
TTGCAATAGTTTCCATTCTT+TGG + chr1_2:49216335-49216354 None:intergenic 30.0%
GCATGTATATAGTACAGAAA+TGG + chr1_2:49216372-49216391 None:intergenic 30.0%
CACAACTTAATAGAAAGCTA+CGG - chr1_2:49216426-49216445 Msa0074550:intron 30.0%
!!! GCTACTTTGTTTTTACTAAG+GGG + chr1_2:49216470-49216489 None:intergenic 30.0%
!!! CTGCTACTTTGTTTTTACTA+AGG + chr1_2:49216472-49216491 None:intergenic 30.0%
TAGTAAAAACAAAGTAGCAG+TGG - chr1_2:49216472-49216491 Msa0074550:CDS 30.0%
! TAGTTGATGCAAGAGATTTA+TGG - chr1_2:49216570-49216589 Msa0074550:intron 30.0%
! AGTTGATGCAAGAGATTTAT+GGG - chr1_2:49216571-49216590 Msa0074550:intron 30.0%
! CAAAGTCATTTAAGTTCCTA+AGG - chr1_2:49216635-49216654 Msa0074550:CDS 30.0%
! ATCGAAGATTAACTCCTTTT+TGG + chr1_2:49216767-49216786 None:intergenic 30.0%
TTCATTAAGGCTTCACTCAT+TGG + chr1_2:49202912-49202931 None:intergenic 35.0%
AGTGAAGCCTTAATGAAATC+TGG - chr1_2:49202915-49202934 Msa0074550:CDS 35.0%
AAGCCTTAATGAAATCTGGA+AGG - chr1_2:49202919-49202938 Msa0074550:CDS 35.0%
TGACCTTCCAGATTTCATTA+AGG + chr1_2:49202925-49202944 None:intergenic 35.0%
TCTTCTTCTCAATGTGTGAA+TGG - chr1_2:49202946-49202965 Msa0074550:intron 35.0%
! ATTTTGTGAAACATAGGGGA+TGG - chr1_2:49203040-49203059 Msa0074550:intron 35.0%
! TTTTGTGAAACATAGGGGAT+GGG - chr1_2:49203041-49203060 Msa0074550:intron 35.0%
! CAAAAAGTGTGGGAAATAGT+TGG - chr1_2:49203082-49203101 Msa0074550:intron 35.0%
! AAGAAACTCTTTTACTAGGG+AGG + chr1_2:49203355-49203374 None:intergenic 35.0%
ATCGTTCTCATTTCAGCATA+TGG - chr1_2:49203496-49203515 Msa0074550:intron 35.0%
TCGTTCTCATTTCAGCATAT+GGG - chr1_2:49203497-49203516 Msa0074550:intron 35.0%
TGATAGGCTCCTTTATTAGT+TGG - chr1_2:49203651-49203670 Msa0074550:intron 35.0%
GAAGTTATTGCAGTAAACCA+AGG - chr1_2:49203726-49203745 Msa0074550:CDS 35.0%
ACGAATGGTGTATGAAATCA+AGG + chr1_2:49203937-49203956 None:intergenic 35.0%
TAGATAGGTGTATACGTTGT+AGG - chr1_2:49204256-49204275 Msa0074550:intron 35.0%
AGGCAACAATAATTGCATCT+TGG - chr1_2:49204342-49204361 Msa0074550:intron 35.0%
TAGATCTCTTGCATCAACAA+TGG + chr1_2:49204393-49204412 None:intergenic 35.0%
TTGTTGATGCAAGAGATCTA+TGG - chr1_2:49204393-49204412 Msa0074550:intron 35.0%
TGTTGATGCAAGAGATCTAT+GGG - chr1_2:49204394-49204413 Msa0074550:intron 35.0%
AGCATGAGAATCTATTTCAG+CGG + chr1_2:49204542-49204561 None:intergenic 35.0%
GCTTTCAAATTGCATCAAGA+AGG + chr1_2:49204755-49204774 None:intergenic 35.0%
AAACATTTGAGAAGATCCGA+TGG - chr1_2:49205064-49205083 Msa0074550:intron 35.0%
AACATTTGAGAAGATCCGAT+GGG - chr1_2:49205065-49205084 Msa0074550:intron 35.0%
ATTCTAGATAGGAACAAGGA+CGG - chr1_2:49205425-49205444 Msa0074550:intron 35.0%
AACAAGGACGGATAAATAAG+AGG - chr1_2:49205437-49205456 Msa0074550:intron 35.0%
AACTATAACTCTAGCCAGTA+TGG - chr1_2:49205460-49205479 Msa0074550:intron 35.0%
! GTGTAACGGTAAAAGTATGA+AGG - chr1_2:49205765-49205784 Msa0074550:intron 35.0%
! TGAAGGTAGAAGAGAGATTT+TGG - chr1_2:49205782-49205801 Msa0074550:intron 35.0%
TGTTACTAAACTCAAAGGCT+TGG - chr1_2:49206062-49206081 Msa0074550:intron 35.0%
GGAGTAAACACATTGATGTA+AGG + chr1_2:49206172-49206191 None:intergenic 35.0%
TGAACTATTCTCACAGTGAA+TGG - chr1_2:49206230-49206249 Msa0074550:intron 35.0%
! AGTAACTCTTTTCACTACTG+AGG + chr1_2:49206349-49206368 None:intergenic 35.0%
CTATGGTCTAATGTTTGAGA+AGG + chr1_2:49206504-49206523 None:intergenic 35.0%
TTCACATGGTAGTTGTGTAA+AGG + chr1_2:49206556-49206575 None:intergenic 35.0%
GTACTTGATTGCAAGATACT+TGG + chr1_2:49206593-49206612 None:intergenic 35.0%
TGAATATGCAAGATCAGATC+TGG - chr1_2:49206615-49206634 Msa0074550:intron 35.0%
ACAACATACAAGCAAATGGT+AGG + chr1_2:49206664-49206683 None:intergenic 35.0%
CTCAACAACATACAAGCAAA+TGG + chr1_2:49206668-49206687 None:intergenic 35.0%
ACTAAGGATGAGACTAGAAA+AGG + chr1_2:49206697-49206716 None:intergenic 35.0%
AATCTTGCAAAGATTTGGCA+TGG + chr1_2:49206767-49206786 None:intergenic 35.0%
!! GATAGAGACTTATTTCTGTC+AGG + chr1_2:49207008-49207027 None:intergenic 35.0%
AAAACACAAAGCAAGATTGG+TGG + chr1_2:49207311-49207330 None:intergenic 35.0%
CATTGAAAGCAATGACACTT+GGG + chr1_2:49207419-49207438 None:intergenic 35.0%
ATATGTTGTTGGATCTTCAC+TGG - chr1_2:49207495-49207514 Msa0074550:intron 35.0%
AGAATTAGGATTTGGGGAAA+AGG + chr1_2:49207609-49207628 None:intergenic 35.0%
GGATTGGGAAAAGAAAGAAA+TGG + chr1_2:49207794-49207813 None:intergenic 35.0%
AGAATCCAAACAATGGGATT+GGG + chr1_2:49207809-49207828 None:intergenic 35.0%
AAGAATCCAAACAATGGGAT+TGG + chr1_2:49207810-49207829 None:intergenic 35.0%
AATCTAAGGAAAAAGCTGGA+TGG + chr1_2:49207939-49207958 None:intergenic 35.0%
!! TATTCTAAAGTGATGCACTG+AGG - chr1_2:49207992-49208011 Msa0074550:intron 35.0%
!! ATTCTAAAGTGATGCACTGA+GGG - chr1_2:49207993-49208012 Msa0074550:intron 35.0%
AGCAACCTTAAACTTGTCAA+TGG + chr1_2:49208197-49208216 None:intergenic 35.0%
GGCTTAAAAGGATATGGTAA+AGG + chr1_2:49208318-49208337 None:intergenic 35.0%
CTTCAAAGGCTTGAAAACTT+TGG + chr1_2:49208339-49208358 None:intergenic 35.0%
!! ATGTTGCTTTCATGCTTCTA+AGG + chr1_2:49208405-49208424 None:intergenic 35.0%
! TTAGAAGCATGAAAGCAACA+TGG - chr1_2:49208404-49208423 Msa0074550:intron 35.0%
TTTCAAGAATGATGCATGCA+AGG + chr1_2:49208513-49208532 None:intergenic 35.0%
GCATGCATCATTCTTGAAAA+TGG - chr1_2:49208514-49208533 Msa0074550:intron 35.0%
CAACTGATTATTCTTTAGGC+CGG - chr1_2:49208571-49208590 Msa0074550:intron 35.0%
AACTGATTATTCTTTAGGCC+GGG - chr1_2:49208572-49208591 Msa0074550:intron 35.0%
AAGGGAAACCTCAAAATTCA+AGG + chr1_2:49208638-49208657 None:intergenic 35.0%
CAAGGATCATTATGTCATTG+AGG + chr1_2:49208790-49208809 None:intergenic 35.0%
! TTGTGTTTTCTCTTGAGTCA+AGG + chr1_2:49208808-49208827 None:intergenic 35.0%
!!! GGCTAACAAATTTTGAAGTC+AGG + chr1_2:49208839-49208858 None:intergenic 35.0%
TCCACAAAAAAGCTGAGTTA+GGG + chr1_2:49208870-49208889 None:intergenic 35.0%
TAACAGCCAAATCTAACGTT+AGG - chr1_2:49208892-49208911 Msa0074550:intron 35.0%
AACAGCCAAATCTAACGTTA+GGG - chr1_2:49208893-49208912 Msa0074550:intron 35.0%
TTTGTCCCTAACGTTAGATT+TGG + chr1_2:49208901-49208920 None:intergenic 35.0%
! CAAAAGTGGCTAAAGGATTT+TGG - chr1_2:49208917-49208936 Msa0074550:intron 35.0%
!!! TTGTGTTTTTTCCTCATCCA+AGG - chr1_2:49208951-49208970 Msa0074550:intron 35.0%
TGTAAACTTAGCTGCCATAA+TGG + chr1_2:49208978-49208997 None:intergenic 35.0%
ATTGGAAGAAACAACCATTG+TGG + chr1_2:49209009-49209028 None:intergenic 35.0%
ATGGTCTTCAAATCATTAGG+GGG - chr1_2:49209509-49209528 Msa0074550:intron 35.0%
! ATCTGGTGCAAGGTATTTAT+GGG - chr1_2:49209648-49209667 Msa0074550:intron 35.0%
GCTAGAAACATTGTTTGTGT+GGG + chr1_2:49209747-49209766 None:intergenic 35.0%
AGCTAGAAACATTGTTTGTG+TGG + chr1_2:49209748-49209767 None:intergenic 35.0%
!! TATTTCTAGCTTGCATTTGG+TGG + chr1_2:49209779-49209798 None:intergenic 35.0%
GCTAGAAATATATTTGCAGC+TGG - chr1_2:49209789-49209808 Msa0074550:intron 35.0%
TTCCAAAGATTCATGGCAAA+AGG - chr1_2:49209888-49209907 Msa0074550:intron 35.0%
TCCAAAGATTCATGGCAAAA+GGG - chr1_2:49209889-49209908 Msa0074550:intron 35.0%
TTCTAGATGTCAAACTAGTG+AGG + chr1_2:49209943-49209962 None:intergenic 35.0%
ATATCGAGTTAAGTGGATCA+TGG - chr1_2:49210081-49210100 Msa0074550:intron 35.0%
GCTAAAGATGTTAAGTGTTC+TGG - chr1_2:49210358-49210377 Msa0074550:intron 35.0%
ATAGGGTTTATGTCTTTGAC+CGG + chr1_2:49210385-49210404 None:intergenic 35.0%
GTTATTGGGCCTAAGTAATA+GGG + chr1_2:49210402-49210421 None:intergenic 35.0%
TGTTATTGGGCCTAAGTAAT+AGG + chr1_2:49210403-49210422 None:intergenic 35.0%
TCAAGCCCAAATGATGTATT+TGG - chr1_2:49210425-49210444 Msa0074550:intron 35.0%
AGCCTCGTATTTATAAAGGT+GGG + chr1_2:49210628-49210647 None:intergenic 35.0%
ATACGTTAGTTGAGTAGGAA+TGG + chr1_2:49210750-49210769 None:intergenic 35.0%
AAAAATATGTGATGTCCCTC+CGG - chr1_2:49210922-49210941 Msa0074550:intron 35.0%
TTGTCTCTTGTAAATAGGAC+CGG + chr1_2:49210944-49210963 None:intergenic 35.0%
!! TTCTCTTTTAAAAGGACCAG+AGG - chr1_2:49211055-49211074 Msa0074550:intron 35.0%
!! TCTCTTTTAAAAGGACCAGA+GGG - chr1_2:49211056-49211075 Msa0074550:intron 35.0%
GTGTGCCAAAAAGAAACATA+AGG + chr1_2:49211236-49211255 None:intergenic 35.0%
TTATGTTCGGGATATGTCTA+TGG - chr1_2:49211943-49211962 Msa0074550:intron 35.0%
ATTGCATTTGCATGGATCTT+TGG - chr1_2:49212488-49212507 Msa0074550:intron 35.0%
GATGAGTATTTGCATAACCA+TGG + chr1_2:49212545-49212564 None:intergenic 35.0%
TTGCACTTTCAATGAACTTG+AGG + chr1_2:49212577-49212596 None:intergenic 35.0%
! CAAGTTCATTGAAAGTGCAA+TGG - chr1_2:49212577-49212596 Msa0074550:intron 35.0%
! CTTGTATTTTGCATCCTTGT+AGG - chr1_2:49212614-49212633 Msa0074550:intron 35.0%
CAATATTCATGAACCCTACA+AGG + chr1_2:49212631-49212650 None:intergenic 35.0%
! CTTAACATTCTTCTCTAGAG+TGG + chr1_2:49212714-49212733 None:intergenic 35.0%
TATAGTACTCCATCCTAATG+TGG - chr1_2:49213109-49213128 Msa0074550:intron 35.0%
! AGTATTTTGCCACATTAGGA+TGG + chr1_2:49213121-49213140 None:intergenic 35.0%
!!! GGAAAGTATTTTGCCACATT+AGG + chr1_2:49213125-49213144 None:intergenic 35.0%
AGTACTCCATCCTGAATTAT+AGG - chr1_2:49213174-49213193 Msa0074550:intron 35.0%
! TTTGTCCGTTAATATTGGCT+TGG - chr1_2:49213229-49213248 Msa0074550:intron 35.0%
!! TTGTCCGTTAATATTGGCTT+GGG - chr1_2:49213230-49213249 Msa0074550:intron 35.0%
AGATCCCAAGCCAATATTAA+CGG + chr1_2:49213237-49213256 None:intergenic 35.0%
!! TTAATATTGGCTTGGGATCT+TGG - chr1_2:49213237-49213256 Msa0074550:intron 35.0%
AAAGCCACCATATTTCCATA+TGG + chr1_2:49213444-49213463 None:intergenic 35.0%
TCTTGACCGAATGATGAAAT+TGG - chr1_2:49213871-49213890 Msa0074550:intron 35.0%
GAAAGTTTAATCCGAGATAC+AGG - chr1_2:49214152-49214171 Msa0074550:intron 35.0%
!! AATCGAGACTCAAAGGTATT+TGG - chr1_2:49214472-49214491 Msa0074550:intron 35.0%
TATGATTGTTGACACCTGAT+TGG - chr1_2:49214642-49214661 Msa0074550:intron 35.0%
ATCATTGTCACAAACCAATC+AGG + chr1_2:49214659-49214678 None:intergenic 35.0%
ATGCCAAAACATTTGCTTCT+TGG - chr1_2:49214924-49214943 Msa0074550:intron 35.0%
TGCCAAAACATTTGCTTCTT+GGG - chr1_2:49214925-49214944 Msa0074550:intron 35.0%
! TACCCAAGAAGCAAATGTTT+TGG + chr1_2:49202575-49202594 None:intergenic 35.0%
AATAAAGCTTCACTCATTGG+TGG + chr1_2:49215221-49215240 None:intergenic 35.0%
!! AAGCTTTATTAAACTCCGGA+AGG - chr1_2:49215231-49215250 Msa0074550:intron 35.0%
TCACACATAGAGAAGAAGAT+CGG + chr1_2:49215257-49215276 None:intergenic 35.0%
TCTTCTTCTCTATGTGTGAA+TGG - chr1_2:49215258-49215277 Msa0074550:intron 35.0%
! ATGGTGAGTTGAATTGATCA+TGG - chr1_2:49215277-49215296 Msa0074550:intron 35.0%
!!! CTTTTCTAAAATGAAGGGGA+TGG - chr1_2:49215348-49215367 Msa0074550:intron 35.0%
CAGGCGATATAGAAGATAAT+TGG - chr1_2:49215420-49215439 Msa0074550:intron 35.0%
CTAATGCCCAAATGCTAAAA+TGG + chr1_2:49215868-49215887 None:intergenic 35.0%
AAATAGGCTCCTCTATTAGT+TGG - chr1_2:49215980-49215999 Msa0074550:intron 35.0%
TTTGGTCATGCAGATAAACT+TGG - chr1_2:49216154-49216173 Msa0074550:intron 35.0%
!! CAACTATAGTTTCTGGTTCA+AGG + chr1_2:49216556-49216575 None:intergenic 35.0%
CTTGCATCAACTATAGTTTC+TGG + chr1_2:49216563-49216582 None:intergenic 35.0%
!! CTCAACACAATCATTGGTTT+CGG - chr1_2:49216688-49216707 Msa0074550:intron 35.0%
!! TCAACACAATCATTGGTTTC+GGG - chr1_2:49216689-49216708 Msa0074550:intron 35.0%
TGTATGTTCTGACACCAAAA+AGG - chr1_2:49216750-49216769 Msa0074550:intron 35.0%
! GTTTTTGACACGTACTGTAT+TGG - chr1_2:49216817-49216836 Msa0074550:CDS 35.0%
TTTATTTGTCGCTCCTCTTT+AGG + chr1_2:49216867-49216886 None:intergenic 35.0%
TAAAGAGGAGCGACAAATAA+AGG - chr1_2:49216866-49216885 Msa0074550:CDS 35.0%
CCTATTGCAGTAAAATCAAG+TGG + chr1_2:49216990-49217009 None:intergenic 35.0%
! CCACTTGATTTTACTGCAAT+AGG - chr1_2:49216987-49217006 Msa0074550:CDS 35.0%
GAGGGAAATGTTGCAGTATT+GGG + chr1_2:49202339-49202358 None:intergenic 40.0%
TGAGGGAAATGTTGCAGTAT+TGG + chr1_2:49202340-49202359 None:intergenic 40.0%
AATACTGCAACATTTCCCTC+AGG - chr1_2:49202339-49202358 Msa0074550:three_prime_UTR 40.0%
AACATTTCCCTCAGGAATGA+AGG - chr1_2:49202347-49202366 Msa0074550:three_prime_UTR 40.0%
ACCCTTGTCGTGAACATAAT+CGG + chr1_2:49202379-49202398 None:intergenic 40.0%
! TCACGACAAGGGTTTAAAGT+TGG - chr1_2:49202386-49202405 Msa0074550:three_prime_UTR 40.0%
! CACGACAAGGGTTTAAAGTT+GGG - chr1_2:49202387-49202406 Msa0074550:three_prime_UTR 40.0%
! ACGACAAGGGTTTAAAGTTG+GGG - chr1_2:49202388-49202407 Msa0074550:three_prime_UTR 40.0%
ACTTGTAGTAAACGTATGCC+TGG - chr1_2:49202523-49202542 Msa0074550:three_prime_UTR 40.0%
AAGGTCTAAGCCCTAAAGAA+AGG - chr1_2:49202778-49202797 Msa0074550:intron 40.0%
ATTAAGGCTTCACTCATTGG+CGG + chr1_2:49202909-49202928 None:intergenic 40.0%
GGAAATAGTTGGAGAACAAC+AGG - chr1_2:49203093-49203112 Msa0074550:intron 40.0%
! AATAAATGGGCATCGTATGC+TGG - chr1_2:49203300-49203319 Msa0074550:intron 40.0%
TAATTACCATTCCATCCTCC+AGG + chr1_2:49203327-49203346 None:intergenic 40.0%
ATTAGATCCTGACATGCTTG+AGG - chr1_2:49203443-49203462 Msa0074550:intron 40.0%
TGGTTGTGATATTCGTGCAA+TGG - chr1_2:49203671-49203690 Msa0074550:intron 40.0%
TACTGCAATAACTTCCGAGT+TGG + chr1_2:49203721-49203740 None:intergenic 40.0%
ACACCATTCGTACCATACTA+TGG - chr1_2:49203946-49203965 Msa0074550:intron 40.0%
AGGTGTATACGTTGTAGGTT+TGG - chr1_2:49204261-49204280 Msa0074550:intron 40.0%
GGTGTATACGTTGTAGGTTT+GGG - chr1_2:49204262-49204281 Msa0074550:intron 40.0%
AGGTCCTCTAAGTGAAAACA+AGG - chr1_2:49204286-49204305 Msa0074550:CDS 40.0%
!!! GCTACCTTGTTTTCACTTAG+AGG + chr1_2:49204293-49204312 None:intergenic 40.0%
ATGGAATAGGAGCTCAACAA+AGG - chr1_2:49204322-49204341 Msa0074550:CDS 40.0%
ATTGCATCTTGGTCTGACAT+AGG - chr1_2:49204353-49204372 Msa0074550:intron 40.0%
TTGAGGCGAGCTTAATATCA+TGG - chr1_2:49204714-49204733 Msa0074550:intron 40.0%
AATTCAAAGCCTAGCAGTGT+TGG + chr1_2:49205097-49205116 None:intergenic 40.0%
ATGAACTTGAGCTTCATGCA+GGG + chr1_2:49205132-49205151 None:intergenic 40.0%
CAATTCTCAAAACTGCGTCT+TGG - chr1_2:49205233-49205252 Msa0074550:CDS 40.0%
!!! TGCAGTTTTGAGAACCTTTG+TGG + chr1_2:49205262-49205281 None:intergenic 40.0%
AAAAACCGAATGGTTAACCC+AGG + chr1_2:49205285-49205304 None:intergenic 40.0%
TTCGCATGAAGCTAGATAGA+GGG - chr1_2:49205313-49205332 Msa0074550:intron 40.0%
ACTTGCAAGAATTGCCATAC+TGG + chr1_2:49205477-49205496 None:intergenic 40.0%
!! AACTAACTTGCTTGTGATGC+AGG - chr1_2:49205875-49205894 Msa0074550:intron 40.0%
! AGTTTAGGGGAGCATATGTT+TGG + chr1_2:49205974-49205993 None:intergenic 40.0%
TGCAAATTGAGAGACAAGCT+TGG + chr1_2:49206039-49206058 None:intergenic 40.0%
AAAATCCTGTCATGCATGGA+AGG + chr1_2:49206193-49206212 None:intergenic 40.0%
CGAAAAAATCCTGTCATGCA+TGG + chr1_2:49206197-49206216 None:intergenic 40.0%
GTCATGGAGTATGGTTAAGA+AGG + chr1_2:49206296-49206315 None:intergenic 40.0%
GTAGTGTATGTCATGGAGTA+TGG + chr1_2:49206305-49206324 None:intergenic 40.0%
TCGAAAGGAACAACTAGCTA+TGG + chr1_2:49206521-49206540 None:intergenic 40.0%
!! AGGATTCTGAGATACTCGAA+AGG + chr1_2:49206536-49206555 None:intergenic 40.0%
!! GAGACTTATTTCTGTCAGGA+AGG + chr1_2:49207004-49207023 None:intergenic 40.0%
ATCTTACCATACCATGCTCT+AGG - chr1_2:49207025-49207044 Msa0074550:intron 40.0%
GTCTACGTTGAGCAATCTTA+AGG + chr1_2:49207118-49207137 None:intergenic 40.0%
! GTTCTTTTCTCCATCGTGAA+CGG + chr1_2:49207150-49207169 None:intergenic 40.0%
! CAATGAAGTGTTTGTACCTG+TGG + chr1_2:49207255-49207274 None:intergenic 40.0%
CCATTGAAAGCAATGACACT+TGG + chr1_2:49207420-49207439 None:intergenic 40.0%
! CCAAGTGTCATTGCTTTCAA+TGG - chr1_2:49207417-49207436 Msa0074550:intron 40.0%
ACTATGATTGCTTGCACTGT+AGG - chr1_2:49207723-49207742 Msa0074550:intron 40.0%
! CTTTTCCCAATCCCATTGTT+TGG - chr1_2:49207801-49207820 Msa0074550:intron 40.0%
ATTCTACACCAAGCTTCTTC+TGG - chr1_2:49208020-49208039 Msa0074550:intron 40.0%
ACATAACACCAGAAGAAGCT+TGG + chr1_2:49208031-49208050 None:intergenic 40.0%
! GACAAGTTTAAGGTTGCTTG+TGG - chr1_2:49208199-49208218 Msa0074550:intron 40.0%
AACCCTAGTTCCTTCAAAGT+GGG - chr1_2:49208287-49208306 Msa0074550:intron 40.0%
! TTCCCACTTTGAAGGAACTA+GGG + chr1_2:49208292-49208311 None:intergenic 40.0%
TATGGGCATTTGAGCTTCAA+AGG + chr1_2:49208353-49208372 None:intergenic 40.0%
AAATGCCCATATCTGCTATG+CGG - chr1_2:49208362-49208381 Msa0074550:intron 40.0%
ACATACCGCATAGCAGATAT+GGG + chr1_2:49208370-49208389 None:intergenic 40.0%
! AGTGAGGTGTATTTTCTTCC+CGG + chr1_2:49208593-49208612 None:intergenic 40.0%
! TTCCTCCACCTTGAATTTTG+AGG - chr1_2:49208627-49208646 Msa0074550:intron 40.0%
AACCTCAAAATTCAAGGTGG+AGG + chr1_2:49208632-49208651 None:intergenic 40.0%
GGAAACCTCAAAATTCAAGG+TGG + chr1_2:49208635-49208654 None:intergenic 40.0%
AGCTGAGTTAGGGATGAAAA+TGG + chr1_2:49208860-49208879 None:intergenic 40.0%
!!! TCCCTAACTCAGCTTTTTTG+TGG - chr1_2:49208866-49208885 Msa0074550:intron 40.0%
CTCCACAAAAAAGCTGAGTT+AGG + chr1_2:49208871-49208890 None:intergenic 40.0%
TCTAACGTTAGGGACAAAAG+TGG - chr1_2:49208903-49208922 Msa0074550:intron 40.0%
TTAGGGACAAAAGTGGCTAA+AGG - chr1_2:49208910-49208929 Msa0074550:intron 40.0%
!!! GGCTAAAGGATTTTGGTGTT+AGG - chr1_2:49208924-49208943 Msa0074550:intron 40.0%
ATTTGAAGACCATTCTCCTC+AGG + chr1_2:49209502-49209521 None:intergenic 40.0%
ACGACATCAAGTGAAAGTTG+TGG + chr1_2:49209539-49209558 None:intergenic 40.0%
ATCCTACCTGCTTCATTTCT+TGG + chr1_2:49209630-49209649 None:intergenic 40.0%
! GATCTGGTGCAAGGTATTTA+TGG - chr1_2:49209647-49209666 Msa0074550:intron 40.0%
! TCTGGTGCAAGGTATTTATG+GGG - chr1_2:49209649-49209668 Msa0074550:intron 40.0%
! TAGCTTGCATTTGGTGGAAT+TGG + chr1_2:49209773-49209792 None:intergenic 40.0%
TGGATGAAATCCCACTCATA+TGG + chr1_2:49209816-49209835 None:intergenic 40.0%
! ACCCTTTTGCCATGAATCTT+TGG + chr1_2:49209893-49209912 None:intergenic 40.0%
CAAAAGGGTAGTCACGAATA+CGG - chr1_2:49209904-49209923 Msa0074550:intron 40.0%
CAAGAGTAGGAATTACATGC+TGG - chr1_2:49210003-49210022 Msa0074550:intron 40.0%
! AGATGTTAAGTGTTCTGGAC+CGG - chr1_2:49210363-49210382 Msa0074550:intron 40.0%
TGAATGTAGAGCCGTTGTAA+TGG + chr1_2:49210605-49210624 None:intergenic 40.0%
CACCCACCTTTATAAATACG+AGG - chr1_2:49210623-49210642 Msa0074550:intron 40.0%
GAGCCTCGTATTTATAAAGG+TGG + chr1_2:49210629-49210648 None:intergenic 40.0%
AAGTGAGAGAGATTCTACCT+TGG + chr1_2:49210662-49210681 None:intergenic 40.0%
TCAGTAGAGGTTCAGAATGA+GGG + chr1_2:49210690-49210709 None:intergenic 40.0%
CTGATCAGGTACGATCATTA+AGG - chr1_2:49210808-49210827 Msa0074550:intron 40.0%
TACATTTCATGTACTCCCTC+TGG + chr1_2:49211074-49211093 None:intergenic 40.0%
! TAATTGTTAGAAGTGCGCGT+TGG - chr1_2:49211115-49211134 Msa0074550:intron 40.0%
CAAGCTTGTGACCTAAGTAA+GGG + chr1_2:49211290-49211309 None:intergenic 40.0%
AACATAAGGAATGCCGAACT+TGG + chr1_2:49211318-49211337 None:intergenic 40.0%
GAACGATCTAACCTCTGTAA+TGG + chr1_2:49211587-49211606 None:intergenic 40.0%
AAAAAGGAGTTGGAGATCCT+TGG - chr1_2:49211621-49211640 Msa0074550:intron 40.0%
AATGGATGATATGGGTGAAC+AGG + chr1_2:49212462-49212481 None:intergenic 40.0%
! TGAAAGTGCAATGGCAAAGA+TGG - chr1_2:49212586-49212605 Msa0074550:intron 40.0%
TCTACAGCTACTCGCTTATT+AGG - chr1_2:49212665-49212684 Msa0074550:intron 40.0%
TAAATAAGTGACCGTTCTCG+TGG - chr1_2:49213061-49213080 Msa0074550:intron 40.0%
ATAAATGCATCCCGACCATA+TGG - chr1_2:49213426-49213445 Msa0074550:intron 40.0%
ATCCCGACCATATGGAAATA+TGG - chr1_2:49213434-49213453 Msa0074550:intron 40.0%
CACCATATTTCCATATGGTC+GGG + chr1_2:49213439-49213458 None:intergenic 40.0%
CCACCATATTTCCATATGGT+CGG + chr1_2:49213440-49213459 None:intergenic 40.0%
TGATGGAATTACCCATAGTG+AGG - chr1_2:49213911-49213930 Msa0074550:intron 40.0%
TGATGATCAGATGGAATAGC+TGG - chr1_2:49214105-49214124 Msa0074550:intron 40.0%
! TGGAATAGCTGGAACCATTT+TGG - chr1_2:49214116-49214135 Msa0074550:intron 40.0%
TATTATTTCAGCCGACGCAA+TGG - chr1_2:49214256-49214275 Msa0074550:intron 40.0%
ATTTGTACCCTAAAGCAGCA+AGG + chr1_2:49214292-49214311 None:intergenic 40.0%
GGAACTTAATCGAGACTCAA+AGG - chr1_2:49214465-49214484 Msa0074550:intron 40.0%
AACGTTTCCTTCAGGAATCA+AGG - chr1_2:49214707-49214726 Msa0074550:intron 40.0%
TCATAGGAAAGGCTTGAAGT+TGG - chr1_2:49214746-49214765 Msa0074550:intron 40.0%
CATAGGAAAGGCTTGAAGTT+GGG - chr1_2:49214747-49214766 Msa0074550:intron 40.0%
TTGGGAGTTTATTCAGATGC+CGG - chr1_2:49214765-49214784 Msa0074550:intron 40.0%
ACTTGTAGTAAACGTATGCC+TGG - chr1_2:49202523-49202542 Msa0074550:three_prime_UTR 40.0%
TAAACGTATGCCTGGATCAT+TGG - chr1_2:49214886-49214905 Msa0074550:intron 40.0%
AAACGTATGCCTGGATCATT+GGG - chr1_2:49214887-49214906 Msa0074550:intron 40.0%
ATTTCATGTCCCAATGATCC+AGG + chr1_2:49214899-49214918 None:intergenic 40.0%
! CCAACTATTTCCCACACTTT+TGG + chr1_2:49203085-49203104 None:intergenic 40.0%
! CCAAAAGTGTGGGAAATAGT+TGG - chr1_2:49215390-49215409 Msa0074550:intron 40.0%
GGAAATAGTTGGAGAACAAC+AGG - chr1_2:49203093-49203112 Msa0074550:intron 40.0%
TAATTACCATTCCATCCTCC+AGG + chr1_2:49203327-49203346 None:intergenic 40.0%
TTTCCAACTTCAAGCATGTC+AGG + chr1_2:49215815-49215834 None:intergenic 40.0%
GACATGCTTGAAGTTGGAAA+TGG - chr1_2:49215815-49215834 Msa0074550:intron 40.0%
ATGCTTGAAGTTGGAAATGG+AGG - chr1_2:49215818-49215837 Msa0074550:intron 40.0%
!! ATCGTGCCCATTTTAGCATT+TGG - chr1_2:49215858-49215877 Msa0074550:intron 40.0%
!! TCGTGCCCATTTTAGCATTT+GGG - chr1_2:49215859-49215878 Msa0074550:intron 40.0%
TAGCATTTGGGCATTAGCTA+AGG - chr1_2:49215871-49215890 Msa0074550:CDS 40.0%
GCAGATAAACTTGGAGTTCA+AGG - chr1_2:49216163-49216182 Msa0074550:intron 40.0%
! GATCTGGAACAACCAAAGAA+TGG - chr1_2:49216320-49216339 Msa0074550:CDS 40.0%
TGCACGTACACATTATGCTA+TGG - chr1_2:49216395-49216414 Msa0074550:intron 40.0%
TAATAGAAAGCTACGGTGAC+AGG - chr1_2:49216433-49216452 Msa0074550:intron 40.0%
! ACAAAGTAGCAGTGGTCTTA+TGG - chr1_2:49216480-49216499 Msa0074550:CDS 40.0%
TGATGCAAGAGATTTATGGG+AGG - chr1_2:49216574-49216593 Msa0074550:intron 40.0%
GTAGCACTCAACACAATCAT+TGG - chr1_2:49216682-49216701 Msa0074550:intron 40.0%
CAAACCATTCACCCATTCAT+TGG - chr1_2:49216840-49216859 Msa0074550:CDS 40.0%
!! CCTCTTTAGGACCAATGAAT+GGG + chr1_2:49216854-49216873 None:intergenic 40.0%
!! TCCTCTTTAGGACCAATGAA+TGG + chr1_2:49216855-49216874 None:intergenic 40.0%
GCTAAAGCCTTCATTCCTGA+GGG + chr1_2:49202357-49202376 None:intergenic 45.0%
AGCCGATTATGTTCACGACA+AGG - chr1_2:49202374-49202393 Msa0074550:three_prime_UTR 45.0%
GCCGATTATGTTCACGACAA+GGG - chr1_2:49202375-49202394 Msa0074550:three_prime_UTR 45.0%
TAAACGTATGCCTGGATCAC+TGG - chr1_2:49202531-49202550 Msa0074550:three_prime_UTR 45.0%
AAACGTATGCCTGGATCACT+GGG - chr1_2:49202532-49202551 Msa0074550:three_prime_UTR 45.0%
TTAAGGCTTCACTCATTGGC+GGG + chr1_2:49202908-49202927 None:intergenic 45.0%
!! CACTTTTTGCCCATGTTGCT+GGG + chr1_2:49203071-49203090 None:intergenic 45.0%
!! ACACTTTTTGCCCATGTTGC+TGG + chr1_2:49203072-49203091 None:intergenic 45.0%
AGCAACATGGGCAAAAAGTG+TGG - chr1_2:49203071-49203090 Msa0074550:intron 45.0%
! GCAACATGGGCAAAAAGTGT+GGG - chr1_2:49203072-49203091 Msa0074550:intron 45.0%
CCGCTATAGAAGTCATGCTA+GGG + chr1_2:49203272-49203291 None:intergenic 45.0%
CCCTAGCATGACTTCTATAG+CGG - chr1_2:49203269-49203288 Msa0074550:intron 45.0%
TCCGCTATAGAAGTCATGCT+AGG + chr1_2:49203273-49203292 None:intergenic 45.0%
ATCCTGACATGCTTGAGGTT+GGG - chr1_2:49203448-49203467 Msa0074550:intron 45.0%
! CAGCATATGGGCTTTAGCTA+AGG - chr1_2:49203509-49203528 Msa0074550:CDS 45.0%
GCAGACAAACTAGGAGTTCA+AGG - chr1_2:49203859-49203878 Msa0074550:intron 45.0%
CTGCCATAGTATGGTACGAA+TGG + chr1_2:49203952-49203971 None:intergenic 45.0%
CATCGACATCTGCCATAGTA+TGG + chr1_2:49203961-49203980 None:intergenic 45.0%
TATACGTTGTAGGTTTGGGC+AGG - chr1_2:49204266-49204285 Msa0074550:intron 45.0%
CTTGCATCAACAATGGCTTC+TGG + chr1_2:49204386-49204405 None:intergenic 45.0%
TGATGCAAGAGATCTATGGG+AGG - chr1_2:49204397-49204416 Msa0074550:intron 45.0%
TCCACTTGAAACTAGCTCGT+GGG + chr1_2:49204586-49204605 None:intergenic 45.0%
TTCCACTTGAAACTAGCTCG+TGG + chr1_2:49204587-49204606 None:intergenic 45.0%
CATGAACTTGAGCTTCATGC+AGG + chr1_2:49205133-49205152 None:intergenic 45.0%
AAGGTTCTCAAAACTGCACC+TGG - chr1_2:49205264-49205283 Msa0074550:CDS 45.0%
AGGTTCTCAAAACTGCACCT+GGG - chr1_2:49205265-49205284 Msa0074550:CDS 45.0%
CTTCGCATGAAGCTAGATAG+AGG - chr1_2:49205312-49205331 Msa0074550:intron 45.0%
! TTAGGGGAGCATATGTTTGG+AGG + chr1_2:49205971-49205990 None:intergenic 45.0%
CAAGCTTGGAATGTGCAAAC+TGG + chr1_2:49206025-49206044 None:intergenic 45.0%
AAGTCGAGTGACTCCTTCTT+TGG - chr1_2:49206124-49206143 Msa0074550:intron 45.0%
CTTCGTGACTTGACCAAAGA+AGG + chr1_2:49206140-49206159 None:intergenic 45.0%
TGGTCAAGTCACGAAGAAAG+TGG - chr1_2:49206144-49206163 Msa0074550:intron 45.0%
TTACTCCTTCCATGCATGAC+AGG - chr1_2:49206185-49206204 Msa0074550:intron 45.0%
GGATGAGACTAGAAAAGGAG+TGG + chr1_2:49206692-49206711 None:intergenic 45.0%
TCCTTAGTCAACTTGCAGCT+AGG - chr1_2:49206709-49206728 Msa0074550:CDS 45.0%
TCAAACAAGCTCCTAGAGCA+TGG + chr1_2:49207039-49207058 None:intergenic 45.0%
ATAGTATCCCATCTTGCCAC+AGG - chr1_2:49207236-49207255 Msa0074550:intron 45.0%
GTTTGTACCTGTGGCAAGAT+GGG + chr1_2:49207246-49207265 None:intergenic 45.0%
TGTTTGTACCTGTGGCAAGA+TGG + chr1_2:49207247-49207266 None:intergenic 45.0%
! CAAAGCAAGATTGGTGGCAA+AGG + chr1_2:49207305-49207324 None:intergenic 45.0%
CCTGTGGGAGCAAACAAAAT+TGG + chr1_2:49207382-49207401 None:intergenic 45.0%
!! CCAATTTTGTTTGCTCCCAC+AGG - chr1_2:49207379-49207398 Msa0074550:intron 45.0%
!! GAACTCACTAGTCTTCCTGT+GGG + chr1_2:49207397-49207416 None:intergenic 45.0%
TGTAGGTTACCTTGTCTGTG+TGG - chr1_2:49207740-49207759 Msa0074550:intron 45.0%
TGAAATGAGCCACACAGACA+AGG + chr1_2:49207752-49207771 None:intergenic 45.0%
GAACCCTAGTTCCTTCAAAG+TGG - chr1_2:49208286-49208305 Msa0074550:intron 45.0%
! CTTCCCACTTTGAAGGAACT+AGG + chr1_2:49208293-49208312 None:intergenic 45.0%
AAAGGGTCTTCCCACTTTGA+AGG + chr1_2:49208300-49208319 None:intergenic 45.0%
CACATACCGCATAGCAGATA+TGG + chr1_2:49208371-49208390 None:intergenic 45.0%
TCCTCATCCAAGGACCATTA+TGG - chr1_2:49208961-49208980 Msa0074550:intron 45.0%
TTAGCTGCCATAATGGTCCT+TGG + chr1_2:49208971-49208990 None:intergenic 45.0%
TGGCAGCTAAGTTTACATCC+AGG - chr1_2:49208981-49209000 Msa0074550:intron 45.0%
GGCAGCTAAGTTTACATCCA+GGG - chr1_2:49208982-49209001 Msa0074550:intron 45.0%
TTTACATCCAGGGACCACAA+TGG - chr1_2:49208992-49209011 Msa0074550:intron 45.0%
AAAGAACCACCTGAGGAGAA+TGG - chr1_2:49209490-49209509 Msa0074550:intron 45.0%
AGGATGCCAAGAAATGAAGC+AGG - chr1_2:49209621-49209640 Msa0074550:intron 45.0%
TGCCAAGAAATGAAGCAGGT+AGG - chr1_2:49209625-49209644 Msa0074550:intron 45.0%
GAAATGAAGCAGGTAGGATC+TGG - chr1_2:49209631-49209650 Msa0074550:intron 45.0%
!! CTCTATTGAGCTGTTTTCCG+TGG + chr1_2:49209718-49209737 None:intergenic 45.0%
ACGCTATGGTTCGTTTGAAC+TGG + chr1_2:49210506-49210525 None:intergenic 45.0%
AAACGTGGAAAGAGACGCTA+TGG + chr1_2:49210520-49210539 None:intergenic 45.0%
GTGAGATATTCACGGAAACG+TGG + chr1_2:49210535-49210554 None:intergenic 45.0%
TTCCGTGAATATCTCACCAG+CGG - chr1_2:49210538-49210557 Msa0074550:intron 45.0%
AACCGCTGGTGAGATATTCA+CGG + chr1_2:49210543-49210562 None:intergenic 45.0%
! ACACACGTGTGCCATTACAA+CGG - chr1_2:49210591-49210610 Msa0074550:intron 45.0%
GGGGAGCCTCGTATTTATAA+AGG + chr1_2:49210632-49210651 None:intergenic 45.0%
AGATTCTACCTTGGAGACTG+CGG + chr1_2:49210653-49210672 None:intergenic 45.0%
GTCAGTAGAGGTTCAGAATG+AGG + chr1_2:49210691-49210710 None:intergenic 45.0%
!! ACCTCTACTGACTTGAACGT+CGG - chr1_2:49210699-49210718 Msa0074550:intron 45.0%
TTAGTTGAGTAGGAATGGCG+GGG + chr1_2:49210745-49210764 None:intergenic 45.0%
GTTAGTTGAGTAGGAATGGC+GGG + chr1_2:49210746-49210765 None:intergenic 45.0%
CGTTAGTTGAGTAGGAATGG+CGG + chr1_2:49210747-49210766 None:intergenic 45.0%
! TCGGTGCTTCTTTAATGTGG+TGG + chr1_2:49210778-49210797 None:intergenic 45.0%
! CTGTCGGTGCTTCTTTAATG+TGG + chr1_2:49210781-49210800 None:intergenic 45.0%
GATCGTACCTGATCAGAAGA+TGG + chr1_2:49210804-49210823 None:intergenic 45.0%
CTCTTGTAAATAGGACCGGA+GGG + chr1_2:49210940-49210959 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG + chr1_2:49210941-49210960 None:intergenic 45.0%
GCAAGCTTGTGACCTAAGTA+AGG + chr1_2:49211291-49211310 None:intergenic 45.0%
CAAGCTTGCGTTACCAAGTT+CGG - chr1_2:49211302-49211321 Msa0074550:intron 45.0%
AAGTGCAATGGCAAAGATGG+TGG - chr1_2:49212589-49212608 Msa0074550:intron 45.0%
AAGCGAGTAGCTGTAGATGA+TGG + chr1_2:49212662-49212681 None:intergenic 45.0%
!! CTTCTCTAGAGTGGACACAT+TGG + chr1_2:49212705-49212724 None:intergenic 45.0%
CCGACCATATGGAAATATGG+TGG - chr1_2:49213437-49213456 Msa0074550:intron 45.0%
TTAGGGGAATATGGTTCCCA+AGG - chr1_2:49214680-49214699 Msa0074550:intron 45.0%
GAAGGAAACGTTGAAGCCTT+GGG + chr1_2:49214699-49214718 None:intergenic 45.0%
TGAAGGAAACGTTGAAGCCT+TGG + chr1_2:49214700-49214719 None:intergenic 45.0%
AAGGCTTCAACGTTTCCTTC+AGG - chr1_2:49214699-49214718 Msa0074550:intron 45.0%
TGGGAGTTTATTCAGATGCC+GGG - chr1_2:49214766-49214785 Msa0074550:intron 45.0%
GACAAATGGGCATCTTATGC+TGG - chr1_2:49215658-49215677 Msa0074550:CDS 45.0%
GATCCTGACATGCTTGAAGT+TGG - chr1_2:49215809-49215828 Msa0074550:intron 45.0%
AAAGCTACGGTGACAGGTAT+GGG - chr1_2:49216439-49216458 Msa0074550:CDS 45.0%
AGGACCAATGAATGGGTGAA+TGG + chr1_2:49216847-49216866 None:intergenic 45.0%
CCCATTCATTGGTCCTAAAG+AGG - chr1_2:49216851-49216870 Msa0074550:CDS 45.0%
! AAGCTCTAGCTAGCACAAGA+AGG - chr1_2:49217044-49217063 Msa0074550:CDS 45.0%
GGCTAAAGCCTTCATTCCTG+AGG + chr1_2:49202358-49202377 None:intergenic 50.0%
TTGGGGATCTACTCAGATGC+TGG - chr1_2:49202405-49202424 Msa0074550:three_prime_UTR 50.0%
TGGGGATCTACTCAGATGCT+GGG - chr1_2:49202406-49202425 Msa0074550:three_prime_UTR 50.0%
TCTTCATGTCCCAGTGATCC+AGG + chr1_2:49202544-49202563 None:intergenic 50.0%
! CTCATTGGCGGGTACCTATT+TGG + chr1_2:49202897-49202916 None:intergenic 50.0%
ATGGGAAGACCCAGCAACAT+GGG - chr1_2:49203059-49203078 Msa0074550:intron 50.0%
GATCCTGACATGCTTGAGGT+TGG - chr1_2:49203447-49203466 Msa0074550:intron 50.0%
TTCCCAACCTCAAGCATGTC+AGG + chr1_2:49203453-49203472 None:intergenic 50.0%
GACATGCTTGAGGTTGGGAA+TGG - chr1_2:49203453-49203472 Msa0074550:intron 50.0%
ATGCTTGAGGTTGGGAATGG+AGG - chr1_2:49203456-49203475 Msa0074550:intron 50.0%
! ACCCACGAGCTAGTTTCAAG+TGG - chr1_2:49204582-49204601 Msa0074550:intron 50.0%
! CAGTGTTGGAGTTGTCCCAT+CGG + chr1_2:49205083-49205102 None:intergenic 50.0%
TGAGCTTCATGCAGGGACAT+AGG + chr1_2:49205125-49205144 None:intergenic 50.0%
CTGCGTCTTGGTTACCACAA+AGG - chr1_2:49205245-49205264 Msa0074550:CDS 50.0%
CTGCACCTGGGTTAACCATT+CGG - chr1_2:49205277-49205296 Msa0074550:intron 50.0%
CACTACTGAGGCAGAGTACA+TGG + chr1_2:49206337-49206356 None:intergenic 50.0%
! GCCTAGCTGCAAGTTGACTA+AGG + chr1_2:49206713-49206732 None:intergenic 50.0%
CAAGCTCCTAGAGCATGGTA+TGG + chr1_2:49207034-49207053 None:intergenic 50.0%
CTTCCTCAATCCGTTCACGA+TGG - chr1_2:49207137-49207156 Msa0074550:intron 50.0%
!! TCTCCATCGTGAACGGATTG+AGG + chr1_2:49207143-49207162 None:intergenic 50.0%
!! GGAACTCACTAGTCTTCCTG+TGG + chr1_2:49207398-49207417 None:intergenic 50.0%
GCCATAATGGTCCTTGGATG+AGG + chr1_2:49208965-49208984 None:intergenic 50.0%
GAAACAACCATTGTGGTCCC+TGG + chr1_2:49209002-49209021 None:intergenic 50.0%
TCTCCTCAGGTGGTTCTTTG+AGG + chr1_2:49209489-49209508 None:intergenic 50.0%
TGAAGACCATTCTCCTCAGG+TGG + chr1_2:49209499-49209518 None:intergenic 50.0%
TTGCAGCTGGACCATATGAG+TGG - chr1_2:49209802-49209821 Msa0074550:intron 50.0%
TGCAGCTGGACCATATGAGT+GGG - chr1_2:49209803-49209822 Msa0074550:intron 50.0%
GGTAGTCACGAATACGGTGA+AGG - chr1_2:49209910-49209929 Msa0074550:intron 50.0%
GTGTCCAGCGGTTACGAAAT+CGG + chr1_2:49210575-49210594 None:intergenic 50.0%
ATTCTACCTTGGAGACTGCG+GGG + chr1_2:49210651-49210670 None:intergenic 50.0%
GATTCTACCTTGGAGACTGC+GGG + chr1_2:49210652-49210671 None:intergenic 50.0%
TCCGACGTTCAAGTCAGTAG+AGG + chr1_2:49210703-49210722 None:intergenic 50.0%
! TTGAACGTCGGAGTGTCTTC+AGG - chr1_2:49210711-49210730 Msa0074550:intron 50.0%
TAGTTGAGTAGGAATGGCGG+GGG + chr1_2:49210744-49210763 None:intergenic 50.0%
CCTGATCAGAAGATGGCTGT+CGG + chr1_2:49210797-49210816 None:intergenic 50.0%
ATTTGTCCGGGTTCGAACCA+AGG + chr1_2:49211641-49211660 None:intergenic 50.0%
ATGAGGGTAGCTTACCCCAT+GGG + chr1_2:49212773-49212792 None:intergenic 50.0%
AATGAGGGTAGCTTACCCCA+TGG + chr1_2:49212774-49212793 None:intergenic 50.0%
!! TCAACTGGCCTTGCTGCTTT+AGG - chr1_2:49214281-49214300 Msa0074550:intron 50.0%
!! CAACTGGCCTTGCTGCTTTA+GGG - chr1_2:49214282-49214301 Msa0074550:intron 50.0%
GCTAGAGCCTTGATTCCTGA+AGG + chr1_2:49214717-49214736 None:intergenic 50.0%
ACGGAATAAGCGTTCGCGAA+AGG - chr1_2:49215095-49215114 Msa0074550:intron 50.0%
AGAGAAGAAGATCGGCCTTC+CGG + chr1_2:49215249-49215268 None:intergenic 50.0%
ATGGGAAGATCCTGCAACGT+GGG - chr1_2:49215367-49215386 Msa0074550:intron 50.0%
! AAATGGAGGCATGACCACAG+AGG - chr1_2:49215832-49215851 Msa0074550:intron 50.0%
ATGGGCACGATATTCCTCTG+TGG + chr1_2:49215849-49215868 None:intergenic 50.0%
GAAAGCTACGGTGACAGGTA+TGG - chr1_2:49216438-49216457 Msa0074550:CDS 50.0%
ATGCAACAGTTACCGCGTCT+TGG - chr1_2:49216519-49216538 Msa0074550:intron 50.0%
GATGGGAAGACCCAGCAACA+TGG - chr1_2:49203058-49203077 Msa0074550:intron 55.0%
GGGACAACTCCAACACTGCT+AGG - chr1_2:49205085-49205104 Msa0074550:CDS 55.0%
GGTCCTCAAAGAACCACCTG+AGG - chr1_2:49209483-49209502 Msa0074550:intron 55.0%
AGCAGGTAGGATCTGGTGCA+AGG - chr1_2:49209638-49209657 Msa0074550:intron 55.0%
TCTTCTAGCCTCAGACGCCA+CGG - chr1_2:49209698-49209717 Msa0074550:intron 55.0%
ATCGGACGAAGTGTAACCGC+TGG + chr1_2:49210557-49210576 None:intergenic 55.0%
TCGTCCGATTTCGTAACCGC+TGG - chr1_2:49210568-49210587 Msa0074550:intron 55.0%
AATGGCACACGTGTGTCCAG+CGG + chr1_2:49210587-49210606 None:intergenic 55.0%
! AGTTGAGTAGGAATGGCGGG+GGG + chr1_2:49210743-49210762 None:intergenic 55.0%
CCGACAGCCATCTTCTGATC+AGG - chr1_2:49210794-49210813 Msa0074550:intron 55.0%
! GGAGATCCTTGGTTCGAACC+CGG - chr1_2:49211632-49211651 Msa0074550:intron 55.0%
ACTTGGACGTACTCCTCCCA+TGG - chr1_2:49212754-49212773 Msa0074550:intron 55.0%
CTTGGACGTACTCCTCCCAT+GGG - chr1_2:49212755-49212774 Msa0074550:intron 55.0%
TTGGACGTACTCCTCCCATG+GGG - chr1_2:49212756-49212775 Msa0074550:intron 55.0%
GGCTGACTGAGGGTGGAATT+TGG - chr1_2:49213082-49213101 Msa0074550:intron 55.0%
GCCAGTTGACACCATTGCGT+CGG + chr1_2:49214270-49214289 None:intergenic 55.0%
GATGGGAAGATCCTGCAACG+TGG - chr1_2:49215366-49215385 Msa0074550:intron 55.0%
! ACACTTTTGGCCCACGTTGC+AGG + chr1_2:49215380-49215399 None:intergenic 55.0%
TGCAACGTGGGCCAAAAGTG+TGG - chr1_2:49215379-49215398 Msa0074550:intron 55.0%
! GCAACGTGGGCCAAAAGTGT+GGG - chr1_2:49215380-49215399 Msa0074550:intron 55.0%
TGGGCATCTTATGCTGGACC+TGG - chr1_2:49215664-49215683 Msa0074550:CDS 55.0%
GCATCTTATGCTGGACCTGG+AGG - chr1_2:49215667-49215686 Msa0074550:CDS 55.0%
CTTATGCTGGACCTGGAGGA+TGG - chr1_2:49215671-49215690 Msa0074550:CDS 55.0%
ACCGCGTCTTGGTCTGACAT+AGG - chr1_2:49216530-49216549 Msa0074550:intron 55.0%
GCCTATGTCAGACCAAGACG+CGG + chr1_2:49216534-49216553 None:intergenic 55.0%
! TGGGCATCGTATGCTGGACC+TGG - chr1_2:49203306-49203325 Msa0074550:intron 60.0%
GCATCGTATGCTGGACCTGG+AGG - chr1_2:49203309-49203328 Msa0074550:intron 60.0%
CGTATGCTGGACCTGGAGGA+TGG - chr1_2:49203313-49203332 Msa0074550:intron 60.0%
GCTGGACCTGGAGGATGGAA+TGG - chr1_2:49203318-49203337 Msa0074550:intron 60.0%
!! GCTGTTTTCCGTGGCGTCTG+AGG + chr1_2:49209709-49209728 None:intergenic 60.0%
AGGGTAGCTTACCCCATGGG+AGG + chr1_2:49212770-49212789 None:intergenic 60.0%
ACCGTTCTCGTGGCTGACTG+AGG - chr1_2:49213071-49213090 Msa0074550:intron 60.0%
CCCTCAGTCAGCCACGAGAA+CGG + chr1_2:49213075-49213094 None:intergenic 60.0%
CCGTTCTCGTGGCTGACTGA+GGG - chr1_2:49213072-49213091 Msa0074550:intron 60.0%
TTCTCGTGGCTGACTGAGGG+TGG - chr1_2:49213075-49213094 Msa0074550:intron 60.0%
! GCCGACGCAATGGTGTCAAC+TGG - chr1_2:49214266-49214285 Msa0074550:intron 60.0%
GCTGGACCTGGAGGATGGAA+TGG - chr1_2:49203318-49203337 Msa0074550:intron 60.0%
CTACGGTGACAGGTATGGGC+AGG - chr1_2:49216443-49216462 Msa0074550:CDS 60.0%
AACACACCCCCTCTCCGCGA+GGG - chr1_2:49210460-49210479 Msa0074550:intron 65.0%
CAACACACCCCCTCTCCGCG+AGG - chr1_2:49210459-49210478 Msa0074550:intron 70.0%
ACACACCCCCTCTCCGCGAG+GGG - chr1_2:49210461-49210480 Msa0074550:intron 70.0%
TTGCTCCGAGCACCCCCTCG+CGG + chr1_2:49210477-49210496 None:intergenic 70.0%
GAGGCTCCCCGCAGTCTCCA+AGG - chr1_2:49210642-49210661 Msa0074550:intron 70.0%
CACACCCCCTCTCCGCGAGG+GGG - chr1_2:49210462-49210481 Msa0074550:intron 75.0%
AGCACCCCCTCGCGGAGAGG+GGG + chr1_2:49210469-49210488 None:intergenic 75.0%
GAGCACCCCCTCGCGGAGAG+GGG + chr1_2:49210470-49210489 None:intergenic 75.0%
CGAGCACCCCCTCGCGGAGA+GGG + chr1_2:49210471-49210490 None:intergenic 75.0%
!! CCTCTCCGCGAGGGGGTGCT+CGG - chr1_2:49210469-49210488 Msa0074550:intron 75.0%
! CCGAGCACCCCCTCGCGGAG+AGG + chr1_2:49210472-49210491 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 49202330 49217071 49202330 ID=Msa0074550;Name=Msa0074550
chr1_2 mRNA 49202330 49217071 49202330 ID=Msa0074550-mRNA-1;Parent=Msa0074550;Name=Msa0074550-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0.48|1|1|1|25|293|662
chr1_2 exon 49202330 49202715 49202330 ID=Msa0074550-mRNA-1:exon:15070;Parent=Msa0074550-mRNA-1
chr1_2 exon 49202806 49202946 49202806 ID=Msa0074550-mRNA-1:exon:15069;Parent=Msa0074550-mRNA-1
chr1_2 exon 49203335 49203415 49203335 ID=Msa0074550-mRNA-1:exon:15068;Parent=Msa0074550-mRNA-1
chr1_2 exon 49203509 49203591 49203509 ID=Msa0074550-mRNA-1:exon:15067;Parent=Msa0074550-mRNA-1
chr1_2 exon 49203704 49203768 49203704 ID=Msa0074550-mRNA-1:exon:15066;Parent=Msa0074550-mRNA-1
chr1_2 exon 49203954 49204037 49203954 ID=Msa0074550-mRNA-1:exon:15065;Parent=Msa0074550-mRNA-1
chr1_2 exon 49204122 49204187 49204122 ID=Msa0074550-mRNA-1:exon:15064;Parent=Msa0074550-mRNA-1
chr1_2 exon 49204285 49204343 49204285 ID=Msa0074550-mRNA-1:exon:15063;Parent=Msa0074550-mRNA-1
chr1_2 exon 49204455 49204530 49204455 ID=Msa0074550-mRNA-1:exon:15062;Parent=Msa0074550-mRNA-1
chr1_2 exon 49204614 49204717 49204614 ID=Msa0074550-mRNA-1:exon:15061;Parent=Msa0074550-mRNA-1
chr1_2 exon 49204915 49204949 49204915 ID=Msa0074550-mRNA-1:exon:15060;Parent=Msa0074550-mRNA-1
chr1_2 exon 49205078 49205134 49205078 ID=Msa0074550-mRNA-1:exon:15059;Parent=Msa0074550-mRNA-1
chr1_2 exon 49205228 49205286 49205228 ID=Msa0074550-mRNA-1:exon:15058;Parent=Msa0074550-mRNA-1
chr1_2 exon 49206624 49206765 49206624 ID=Msa0074550-mRNA-1:exon:15057;Parent=Msa0074550-mRNA-1
chr1_2 exon 49214839 49214896 49214839 ID=Msa0074550-mRNA-1:exon:15056;Parent=Msa0074550-mRNA-1
chr1_2 exon 49214983 49215113 49214983 ID=Msa0074550-mRNA-1:exon:15055;Parent=Msa0074550-mRNA-1
chr1_2 exon 49215506 49215538 49215506 ID=Msa0074550-mRNA-1:exon:15054;Parent=Msa0074550-mRNA-1
chr1_2 exon 49215654 49215744 49215654 ID=Msa0074550-mRNA-1:exon:15053;Parent=Msa0074550-mRNA-1
chr1_2 exon 49215871 49215953 49215871 ID=Msa0074550-mRNA-1:exon:15052;Parent=Msa0074550-mRNA-1
chr1_2 exon 49216062 49216126 49216062 ID=Msa0074550-mRNA-1:exon:15051;Parent=Msa0074550-mRNA-1
chr1_2 exon 49216262 49216345 49216262 ID=Msa0074550-mRNA-1:exon:15050;Parent=Msa0074550-mRNA-1
chr1_2 exon 49216434 49216499 49216434 ID=Msa0074550-mRNA-1:exon:15049;Parent=Msa0074550-mRNA-1
chr1_2 exon 49216602 49216660 49216602 ID=Msa0074550-mRNA-1:exon:15048;Parent=Msa0074550-mRNA-1
chr1_2 exon 49216810 49216885 49216810 ID=Msa0074550-mRNA-1:exon:15047;Parent=Msa0074550-mRNA-1
chr1_2 exon 49216974 49217071 49216974 ID=Msa0074550-mRNA-1:exon:15046;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49216974 49217071 49216974 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49216810 49216885 49216810 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49216602 49216660 49216602 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49216434 49216499 49216434 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49216262 49216345 49216262 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49216062 49216126 49216062 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49215871 49215953 49215871 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49215654 49215744 49215654 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49215506 49215538 49215506 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49214983 49215113 49214983 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49214839 49214896 49214839 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49206624 49206765 49206624 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49205228 49205286 49205228 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49205078 49205134 49205078 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49204915 49204949 49204915 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49204614 49204717 49204614 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49204455 49204530 49204455 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49204285 49204343 49204285 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49204122 49204187 49204122 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49203954 49204037 49203954 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49203704 49203768 49203704 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49203509 49203591 49203509 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49203335 49203415 49203335 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49202806 49202946 49202806 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 CDS 49202623 49202715 49202623 ID=Msa0074550-mRNA-1:cds;Parent=Msa0074550-mRNA-1
chr1_2 three_prime_UTR 49202330 49202622 49202330 ID=Msa0074550-mRNA-1:three_prime_utr;Parent=Msa0074550-mRNA-1
Gene Sequence

>Msa0074550

ATGGTTCCCAATACTGCAACATTTCCCTCAGGAATGAAGGCTTTAGCCGATTATGTTCACGACAAGGGTTTAAAGTTGGGGATCTACTCAGATGCTGGAACTCAAACTTGTAGTAAACGTATGCCTGGATCACTGGGACATGAAGAACAAGATGCTAAAACATTTGCTTCTTGGGGAATTGACTATTTGAAGTATGATAATTGTGAAAACAAAGGTCTAAGCCCTAAAGAAAGGTACCCGCCAATGAGTGAAGCCTTAATGAAATCTGGAAGGTCAATCTTCTTCTCAATGTGTGAATGGGGATGGGAAGACCCAGCAACATGGGCAAAAAGTGTGGGAAATAGTTGGAGAACAACAGGTGATATTGAAGATAATTGGAATAGCATGACTTCTATAGCGGATTCAAACAATAAATGGGCATCGTATGCTGGACCTGGAGGATGGAATGATCCTGACATGCTTGAGGTTGGGAATGGAGGCATGACTACAGAAGAATATCGTTCTCATTTCAGCATATGGGCTTTAGCTAAGGCTCCTTTATTAGTTGGTTGTGATATTCGTGCAATGGATAGTACCACATATGAACTAATAACCAACTCGGAAGTTATTGCAGTAAACCAAGACAAACTAGGAGTTCAAGGAAAGAAAGTGAAAAGTCCTCTAAGTGAAAACAAGGTAGCAGTTATTTTATGGAATAGGAGCTCAACAAAGGCAACAATAATTGCATCTTGGTCTGACATAGGTCTAGAACCAGAAGCCATTGTTGATGCAAGAGATCTATGGGAGCATTCAACTCAATCGTCTGTTTCAAGAGAAATCTCCGCTGAAATAGATTCTCATGCTTGGTTCATGAATATTGCAAGTATTCCATCATCTACAGCTACTCGCTTATTAGGAAGTAACAACAAAACCAATGTGTCCACTCTAGAGAAGAATGTTAAGAGTTATATGTTGCAAAATGGACTTGGACGTACTCCTCCCATGGGATGGAATAGCTGGAACCATTTTGGTTGTGATATCAATGAAAGTTTAATCCGAGATACAGCCGACGCAATGGTGTCAACTGGCCTTGCTGCTTTAGGGTACAAATATATTAATTTAGATGATTGTTGGGCGGAACTTAATCGAGACTCAAAGGGGAATATGGTTCCCAAGGCTTCAACGTTTCCTTCAGGAATCAAGGCTCTAGCTCATTATATTCATAGGAAAGGCTTGAAGTTGGGAGTTTATTCAGATGCCGGAAATCTAACTTGTAGTAAACGTATGCCTGGATCATTGGGACATGAAATACAAGATGCCAAAACATTTGCTTCTTGGGGAGTTGACTATTTGAAGTATGATAATTGTGAAAATAACGGAATAAGCGTTCGCGAAAGGTATCCACCAATGAGTGAAGCTTTATTAAACTCCGGAAGGCCGATCTTCTTCTCTATGTGTGAATGGGGATGGGAAGATCCTGCAACGTGGGCCAAAAGTGTGGGAAATAGTTGGAGAACAACAGGCGATATAGAAGATAATTGGAAGAGTATGACTTCTATTATAGATGCAAACGACAAATGGGCATCTTATGCTGGACCTGGAGGATGGAATGATCCTGACATGCTTGAAGTTGGAAATGGAGGCATGACCACAGAGGAATATCGTGCCCATTTTAGCATTTGGGCATTAGCTAAGGCTCCTCTATTAGTTGGATGTAATATTCAAGCAATGGATAATACCACATATGAATTGATAAGCAACTCAGAAGTTATTGCAGTATGGGCAGGTCCCCTTAGTAAAAACAAAGTAGCAGTGGTCTTATGGAATAGAAGTTCATCAAATGCAACAGTTACCGCGTCTTGGTCTGACATAGGCCTTGAACCAGAAACTATAGTTGATGCAAGAGATTTATGGGAGCACTCAACACAATCATTGGTTTCGGGAGAAATATCTGCTGATTTAGATTCACATGCTTGTAAAATGTATGTTCTGACACCAAAAAGGAGTTAA
Protein sequence

>Msa0074550

MVPNTATFPSGMKALADYVHDKGLKLGIYSDAGTQTCSKRMPGSLGHEEQDAKTFASWGIDYLKYDNCENKGLSPKERYPPMSEALMKSGRSIFFSMCEWGWEDPATWAKSVGNSWRTTGDIEDNWNSMTSIADSNNKWASYAGPGGWNDPDMLEVGNGGMTTEEYRSHFSIWALAKAPLLVGCDIRAMDSTTYELITNSEVIAVNQDKLGVQGKKVKSPLSENKVAVILWNRSSTKATIIASWSDIGLEPEAIVDARDLWEHSTQSSVSREISAEIDSHAWFMNIASIPSSTATRLLGSNNKTNVSTLEKNVKSYMLQNGLGRTPPMGWNSWNHFGCDINESLIRDTADAMVSTGLAALGYKYINLDDCWAELNRDSKGNMVPKASTFPSGIKALAHYIHRKGLKLGVYSDAGNLTCSKRMPGSLGHEIQDAKTFASWGVDYLKYDNCENNGISVRERYPPMSEALLNSGRPIFFSMCEWGWEDPATWAKSVGNSWRTTGDIEDNWKSMTSIIDANDKWASYAGPGGWNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLVGCNIQAMDNTTYELISNSEVIAVWAGPLSKNKVAVVLWNRSSSNATVTASWSDIGLEPETIVDARDLWEHSTQSLVSGEISADLDSHACKMYVLTPKRS*