Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030960 | sp|Q9FZ89|Y1815_ARATH | 64.865 | 74 | 24 | 1 | 57 | 128 | 50 | 123 | 2.76e-26 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030960 | Msa0126000 | 0.812463 | 4.187135e-51 | -8.615850e-47 |
| Msa0030960 | Msa1066950 | 0.808198 | 3.485109e-50 | -8.615850e-47 |
| Msa0030960 | Msa1355490 | 0.859046 | 5.421099e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030960 | MtrunA17_Chr1g0188791 | 92.241 | 116 | 9 | 0 | 13 | 128 | 15 | 130 | 1.75e-73 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030960 | AT1G28150.1 | 64.865 | 74 | 24 | 1 | 57 | 128 | 50 | 123 | 2.80e-27 | 98.2 |
| Msa0030960 | AT1G28150.2 | 64.865 | 74 | 24 | 1 | 57 | 128 | 50 | 123 | 2.80e-27 | 98.2 |
Find 41 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCTTAATGAATATTAT+TGG | 0.190749 | 1_1:-57477576 | None:intergenic |
| AAAACCGATGCTTCGGGTTC+TGG | 0.272251 | 1_1:-57475078 | None:intergenic |
| TTCTTAGGTGGGATATTTGC+TGG | 0.305119 | 1_1:+57477043 | Msa0030960:CDS |
| CATATAGGACATAATAGTTC+TGG | 0.312454 | 1_1:+57477316 | Msa0030960:three_prime_UTR |
| CAGGAACCAGTGGCATTCTT+AGG | 0.325742 | 1_1:+57477028 | Msa0030960:intron |
| TGCTTCGGGTTCTGGTGATT+CGG | 0.328190 | 1_1:-57475070 | None:intergenic |
| GAGAATTAAAACCGATGCTT+CGG | 0.341279 | 1_1:-57475085 | None:intergenic |
| TGGTAAATTGTCAACATTCA+TGG | 0.342708 | 1_1:+57477364 | Msa0030960:three_prime_UTR |
| GCTTCGGGTTCTGGTGATTC+GGG | 0.354503 | 1_1:-57475069 | None:intergenic |
| ATTGTTTGCACCATTTGTTT+TGG | 0.357688 | 1_1:+57477483 | Msa0030960:three_prime_UTR |
| AGAATTAAAACCGATGCTTC+GGG | 0.388677 | 1_1:-57475084 | None:intergenic |
| AGTAGTTGATTCTGCTGGAT+TGG | 0.400556 | 1_1:-57477152 | None:intergenic |
| TTAAAGATATCAAAGTTGTT+TGG | 0.418131 | 1_1:+57477538 | Msa0030960:three_prime_UTR |
| AATTGTCAACATTCATGGCT+TGG | 0.447143 | 1_1:+57477369 | Msa0030960:three_prime_UTR |
| GCTTCAGTAGTTGATTCTGC+TGG | 0.449685 | 1_1:-57477157 | None:intergenic |
| TGAAATTGAAGCAGGAATGT+AGG | 0.466785 | 1_1:+57475018 | Msa0030960:intron |
| TTGACGAGAGGGTCTTGTGC+AGG | 0.474518 | 1_1:-57475152 | None:intergenic |
| CTCTGAAGGAATGGGTTATG+AGG | 0.479933 | 1_1:+57477095 | Msa0030960:CDS |
| TATTCAATTTCAATCTCTTG+TGG | 0.483856 | 1_1:-57477184 | None:intergenic |
| TATCACCATCATCACTTTCG+CGG | 0.484312 | 1_1:+57475045 | Msa0030960:CDS |
| ACAAATTATTATTGTGCTGT+TGG | 0.485885 | 1_1:-57477252 | None:intergenic |
| GGTTAAACTGCCAAAACAAA+TGG | 0.497837 | 1_1:-57477493 | None:intergenic |
| TTGATTTGGTAGTTGCGAAT+CGG | 0.503851 | 1_1:+57474841 | None:intergenic |
| ATGAGGAACCTCTGAAGGAA+TGG | 0.505614 | 1_1:+57477086 | Msa0030960:CDS |
| TTTAAGGCTTGATTTGAATG+AGG | 0.510298 | 1_1:+57477069 | Msa0030960:CDS |
| GACAAGAATAACTATATAGC+AGG | 0.512346 | 1_1:-57477514 | None:intergenic |
| TGAGGAACCTCTGAAGGAAT+GGG | 0.523835 | 1_1:+57477087 | Msa0030960:CDS |
| TCTTCAACTGTCATGCACTC+AGG | 0.533853 | 1_1:+57474914 | Msa0030960:CDS |
| CGGGTCCGCGAAAGTGATGA+TGG | 0.533881 | 1_1:-57475050 | None:intergenic |
| CTCATAACCCATTCCTTCAG+AGG | 0.539401 | 1_1:-57477094 | None:intergenic |
| TTCTAATCTGCAGGAACCAG+TGG | 0.542541 | 1_1:+57477018 | Msa0030960:intron |
| GAACCAGTGGCATTCTTAGG+TGG | 0.545711 | 1_1:+57477031 | Msa0030960:CDS |
| ATCACCAGAACCCGAAGCAT+CGG | 0.558374 | 1_1:+57475074 | Msa0030960:CDS |
| TTTGAATGAGGAACCTCTGA+AGG | 0.563194 | 1_1:+57477081 | Msa0030960:CDS |
| TGACAGCTTCTTTGACGAGA+GGG | 0.564005 | 1_1:-57475163 | None:intergenic |
| ATCCCACCTAAGAATGCCAC+TGG | 0.574031 | 1_1:-57477034 | None:intergenic |
| TGAGTGCATGACAGTTGAAG+AGG | 0.582968 | 1_1:-57474912 | None:intergenic |
| AACCAGTGGCATTCTTAGGT+GGG | 0.598806 | 1_1:+57477032 | Msa0030960:CDS |
| TCTCGTCAAAGAAGCTGTCA+AGG | 0.609141 | 1_1:+57475166 | Msa0030960:CDS |
| TTGACAGCTTCTTTGACGAG+AGG | 0.633404 | 1_1:-57475164 | None:intergenic |
| GTAGTTGCGAATCGGAACAG+AGG | 0.681952 | 1_1:+57474849 | Msa0030960:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTAGCTTATTTAT+TGG | + | chr1_1:57475257-57475276 | Msa0030960:intron | 10.0% |
| !! | AAAATCTTAATGAATATTAT+TGG | - | chr1_1:57477579-57477598 | None:intergenic | 10.0% |
| !! | AGGAATAATAGTAATAATAA+CGG | - | chr1_1:57474941-57474960 | None:intergenic | 15.0% |
| !! | GAGAAATAAATAAATTGTAA+TGG | - | chr1_1:57476055-57476074 | None:intergenic | 15.0% |
| !!! | ATTTATTTCTCAGTTTTTTT+TGG | + | chr1_1:57476064-57476083 | Msa0030960:intron | 15.0% |
| !!! | TTTATTTCTCAGTTTTTTTT+GGG | + | chr1_1:57476065-57476084 | Msa0030960:intron | 15.0% |
| !!! | TCAAGTTATTCTAAAATTTT+GGG | - | chr1_1:57476495-57476514 | None:intergenic | 15.0% |
| !!! | TTCAAGTTATTCTAAAATTT+TGG | - | chr1_1:57476496-57476515 | None:intergenic | 15.0% |
| !!! | TATTTTCAAGTGTTTTATTT+TGG | + | chr1_1:57477438-57477457 | Msa0030960:three_prime_UTR | 15.0% |
| !! | AGCTAAAAATAAATACAAGA+AGG | - | chr1_1:57475250-57475269 | None:intergenic | 20.0% |
| !!! | TTTATTGGTAGCTTATTTAT+TGG | + | chr1_1:57475272-57475291 | Msa0030960:intron | 20.0% |
| !! | ACAAAATTAACAACTAACAT+TGG | + | chr1_1:57475563-57475582 | Msa0030960:intron | 20.0% |
| !! | CAAAATTAACAACTAACATT+GGG | + | chr1_1:57475564-57475583 | Msa0030960:intron | 20.0% |
| !!! | TTTTTTTTGGGATAAAAAGA+GGG | + | chr1_1:57476077-57476096 | Msa0030960:intron | 20.0% |
| !!! | TTTGAAGTTCTGTTATTTTT+GGG | - | chr1_1:57476109-57476128 | None:intergenic | 20.0% |
| !! | TGATTCTACTATGATTTATT+AGG | - | chr1_1:57476205-57476224 | None:intergenic | 20.0% |
| !! | TTGATAAATAAAGAAGTTCA+TGG | - | chr1_1:57476685-57476704 | None:intergenic | 20.0% |
| !!! | CAATTTTATCACAATTCTAT+AGG | + | chr1_1:57476909-57476928 | Msa0030960:intron | 20.0% |
| !!! | TGCAAGTTTTAAAGAAATAA+AGG | - | chr1_1:57477219-57477238 | None:intergenic | 20.0% |
| !!! | TTATCACACATTTTTCATAT+AGG | + | chr1_1:57477301-57477320 | Msa0030960:three_prime_UTR | 20.0% |
| !!! | TTTTGGAAATCAAATACAAA+AGG | + | chr1_1:57477455-57477474 | Msa0030960:three_prime_UTR | 20.0% |
| !! | TTAAAGATATCAAAGTTGTT+TGG | + | chr1_1:57477538-57477557 | Msa0030960:three_prime_UTR | 20.0% |
| !!! | TCAACAAAAGTTGATGTATT+TGG | + | chr1_1:57475375-57475394 | Msa0030960:intron | 25.0% |
| ! | TTGTTCATGAATCAATAGTA+CGG | - | chr1_1:57475790-57475809 | None:intergenic | 25.0% |
| !! | AATTTCAGTTTTACACCAAA+AGG | - | chr1_1:57475920-57475939 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTGGGATAAAAAG+AGG | + | chr1_1:57476076-57476095 | Msa0030960:intron | 25.0% |
| !!! | CTTTGAAGTTCTGTTATTTT+TGG | - | chr1_1:57476110-57476129 | None:intergenic | 25.0% |
| ! | TGTCTTAGTTAATATGGATT+AGG | - | chr1_1:57476231-57476250 | None:intergenic | 25.0% |
| !! | TGATGATGTCTTAGTTAATA+TGG | - | chr1_1:57476237-57476256 | None:intergenic | 25.0% |
| ! | ACTACAAAGCTCTATAATAT+AGG | + | chr1_1:57476458-57476477 | Msa0030960:intron | 25.0% |
| ! | AATGAAAAAGTTCTCACAAA+GGG | - | chr1_1:57476623-57476642 | None:intergenic | 25.0% |
| !!! | ATTGCTAGGCTTTAAAAATT+TGG | + | chr1_1:57476967-57476986 | Msa0030960:intron | 25.0% |
| ! | TATTCAATTTCAATCTCTTG+TGG | - | chr1_1:57477187-57477206 | None:intergenic | 25.0% |
| ! | ACAAATTATTATTGTGCTGT+TGG | - | chr1_1:57477255-57477274 | None:intergenic | 25.0% |
| CTTGAAATTGAAATTGAAGC+AGG | + | chr1_1:57475010-57475029 | Msa0030960:intron | 30.0% | |
| !!! | GGTTTTAATTCTCAAAGACA+CGG | + | chr1_1:57475095-57475114 | Msa0030960:CDS | 30.0% |
| GTGTTCAGCTTATTTCAATT+TGG | + | chr1_1:57475306-57475325 | Msa0030960:intron | 30.0% | |
| TAGCACATAAAAGCTCTATT+TGG | - | chr1_1:57475649-57475668 | None:intergenic | 30.0% | |
| AAAACTGTCAGTGTGAAATA+TGG | + | chr1_1:57475827-57475846 | Msa0030960:intron | 30.0% | |
| AACTTCAAAGCAATTAAACG+TGG | + | chr1_1:57476120-57476139 | Msa0030960:intron | 30.0% | |
| GAATAGAATGTTGCTAGAAA+TGG | - | chr1_1:57476307-57476326 | None:intergenic | 30.0% | |
| !! | TATAGAGCTTTGTAGTGTTT+TGG | - | chr1_1:57476454-57476473 | None:intergenic | 30.0% |
| ! | CTAATCATGGACTGTAATTT+AGG | + | chr1_1:57476581-57476600 | Msa0030960:intron | 30.0% |
| ! | ATGGACTGTAATTTAGGAAT+TGG | + | chr1_1:57476587-57476606 | Msa0030960:intron | 30.0% |
| GAATGAAAAAGTTCTCACAA+AGG | - | chr1_1:57476624-57476643 | None:intergenic | 30.0% | |
| ! | TCATACCAGTGTTATTACAA+GGG | - | chr1_1:57476733-57476752 | None:intergenic | 30.0% |
| ! | TTCATACCAGTGTTATTACA+AGG | - | chr1_1:57476734-57476753 | None:intergenic | 30.0% |
| TATGTTAACAAGTTGCTATC+TGG | + | chr1_1:57476840-57476859 | Msa0030960:intron | 30.0% | |
| !! | TCTTGTTATTTCTAATCTGC+AGG | + | chr1_1:57477009-57477028 | Msa0030960:intron | 30.0% |
| !! | GGATATTTGCTGGTATTTTA+AGG | + | chr1_1:57477053-57477072 | Msa0030960:CDS | 30.0% |
| ! | TTTAAGGCTTGATTTGAATG+AGG | + | chr1_1:57477069-57477088 | Msa0030960:CDS | 30.0% |
| CATATAGGACATAATAGTTC+TGG | + | chr1_1:57477316-57477335 | Msa0030960:three_prime_UTR | 30.0% | |
| ! | CTTTAAAAAGACGAAGACAA+AGG | - | chr1_1:57477343-57477362 | None:intergenic | 30.0% |
| !! | TGTCTTCGTCTTTTTAAAGA+TGG | + | chr1_1:57477344-57477363 | Msa0030960:three_prime_UTR | 30.0% |
| TGGTAAATTGTCAACATTCA+TGG | + | chr1_1:57477364-57477383 | Msa0030960:three_prime_UTR | 30.0% | |
| ! | ATTGTTTGCACCATTTGTTT+TGG | + | chr1_1:57477483-57477502 | Msa0030960:three_prime_UTR | 30.0% |
| GACAAGAATAACTATATAGC+AGG | - | chr1_1:57477517-57477536 | None:intergenic | 30.0% | |
| TTCCTCTTTCTTACTCTCTA+TGG | + | chr1_1:57474956-57474975 | Msa0030960:intron | 35.0% | |
| AACCATAGAGAGTAAGAAAG+AGG | - | chr1_1:57474961-57474980 | None:intergenic | 35.0% | |
| TGAAATTGAAGCAGGAATGT+AGG | + | chr1_1:57475018-57475037 | Msa0030960:intron | 35.0% | |
| AGAATTAAAACCGATGCTTC+GGG | - | chr1_1:57475087-57475106 | None:intergenic | 35.0% | |
| GAGAATTAAAACCGATGCTT+CGG | - | chr1_1:57475088-57475107 | None:intergenic | 35.0% | |
| GTATATAAAAAACACGCCTC+AGG | + | chr1_1:57475328-57475347 | Msa0030960:intron | 35.0% | |
| TCTCTTGTATATAGTACCTG+AGG | - | chr1_1:57475347-57475366 | None:intergenic | 35.0% | |
| AATTAAGCAATTGCACTTGC+AGG | - | chr1_1:57475615-57475634 | None:intergenic | 35.0% | |
| ! | TGCAAAAGTCATGTTCCTTT+TGG | + | chr1_1:57475902-57475921 | Msa0030960:intron | 35.0% |
| AAAGCAATTAAACGTGGAGT+AGG | + | chr1_1:57476126-57476145 | Msa0030960:intron | 35.0% | |
| GTTGGATTAAGCTTAACATG+GGG | - | chr1_1:57476541-57476560 | None:intergenic | 35.0% | |
| GGTTGGATTAAGCTTAACAT+GGG | - | chr1_1:57476542-57476561 | None:intergenic | 35.0% | |
| TTAAGCTTAATCCAACCCAA+AGG | + | chr1_1:57476545-57476564 | Msa0030960:intron | 35.0% | |
| TACAGTCCATGATTAGATTG+TGG | - | chr1_1:57476577-57476596 | None:intergenic | 35.0% | |
| TAAAGAAGTTCATGGTGAAC+TGG | - | chr1_1:57476677-57476696 | None:intergenic | 35.0% | |
| ATGAACCCTTGTAATAACAC+TGG | + | chr1_1:57476725-57476744 | Msa0030960:intron | 35.0% | |
| TTAACAAGTTGCTATCTGGA+TGG | + | chr1_1:57476844-57476863 | Msa0030960:intron | 35.0% | |
| TAGCTACATCATAAGAACCA+GGG | - | chr1_1:57476885-57476904 | None:intergenic | 35.0% | |
| AATTGTCAACATTCATGGCT+TGG | + | chr1_1:57477369-57477388 | Msa0030960:three_prime_UTR | 35.0% | |
| GGTTAAACTGCCAAAACAAA+TGG | - | chr1_1:57477496-57477515 | None:intergenic | 35.0% | |
| TATCACCATCATCACTTTCG+CGG | + | chr1_1:57475045-57475064 | Msa0030960:CDS | 40.0% | |
| ATCTTGTTGGAGGTTCTACT+CGG | - | chr1_1:57475451-57475470 | None:intergenic | 40.0% | |
| AGTTAGAGAGTGGAGTGATA+AGG | + | chr1_1:57475515-57475534 | Msa0030960:intron | 40.0% | |
| GTTAGAGAGTGGAGTGATAA+GGG | + | chr1_1:57475516-57475535 | Msa0030960:intron | 40.0% | |
| ACTTGTAAAGTTCGCAACCA+AGG | - | chr1_1:57475747-57475766 | None:intergenic | 40.0% | |
| CTCATGAGTCATGACAGAAA+TGG | - | chr1_1:57475950-57475969 | None:intergenic | 40.0% | |
| ACAAGCTGCTGTAGAAAAAC+AGG | + | chr1_1:57476007-57476026 | Msa0030960:intron | 40.0% | |
| TTTCTCTTAGCTGATCTCGT+TGG | - | chr1_1:57476156-57476175 | None:intergenic | 40.0% | |
| GAAACAAACCAACTAGAGCA+TGG | + | chr1_1:57476172-57476191 | Msa0030960:intron | 40.0% | |
| GAGAATTTCCATGCTCTAGT+TGG | - | chr1_1:57476183-57476202 | None:intergenic | 40.0% | |
| GACATCATCAGTACATGAGT+TGG | + | chr1_1:57476247-57476266 | Msa0030960:intron | 40.0% | |
| AACGATTTCTCCAATGACTG+TGG | - | chr1_1:57476353-57476372 | None:intergenic | 40.0% | |
| AGTCATTGGAGAAATCGTTG+AGG | + | chr1_1:57476354-57476373 | Msa0030960:intron | 40.0% | |
| TAACATGGGGCTTCTAATAG+TGG | - | chr1_1:57476528-57476547 | None:intergenic | 40.0% | |
| GGGTTGGATTAAGCTTAACA+TGG | - | chr1_1:57476543-57476562 | None:intergenic | 40.0% | |
| AGGTAGCCACAATCTAATCA+TGG | + | chr1_1:57476568-57476587 | Msa0030960:intron | 40.0% | |
| TACATCATAAGAACCAGGGA+TGG | - | chr1_1:57476881-57476900 | None:intergenic | 40.0% | |
| GTAGCTACATCATAAGAACC+AGG | - | chr1_1:57476886-57476905 | None:intergenic | 40.0% | |
| TTCTTAGGTGGGATATTTGC+TGG | + | chr1_1:57477043-57477062 | Msa0030960:CDS | 40.0% | |
| TTTGAATGAGGAACCTCTGA+AGG | + | chr1_1:57477081-57477100 | Msa0030960:CDS | 40.0% | |
| ! | AGTAGTTGATTCTGCTGGAT+TGG | - | chr1_1:57477155-57477174 | None:intergenic | 40.0% |
| TGAGTGCATGACAGTTGAAG+AGG | - | chr1_1:57474915-57474934 | None:intergenic | 45.0% | |
| TCTTCAACTGTCATGCACTC+AGG | + | chr1_1:57474914-57474933 | Msa0030960:CDS | 45.0% | |
| TGACAGCTTCTTTGACGAGA+GGG | - | chr1_1:57475166-57475185 | None:intergenic | 45.0% | |
| TTGACAGCTTCTTTGACGAG+AGG | - | chr1_1:57475167-57475186 | None:intergenic | 45.0% | |
| TCTCGTCAAAGAAGCTGTCA+AGG | + | chr1_1:57475166-57475185 | Msa0030960:CDS | 45.0% | |
| AACCTCCAACAAGATCAGCT+AGG | + | chr1_1:57475456-57475475 | Msa0030960:intron | 45.0% | |
| TCCAACAAGATCAGCTAGGA+GGG | + | chr1_1:57475460-57475479 | Msa0030960:intron | 45.0% | |
| GAAGTGGAACAGTTAGAGAG+TGG | + | chr1_1:57475505-57475524 | Msa0030960:intron | 45.0% | |
| !! | TGGAGTGATAAGGGTGTTCT+CGG | + | chr1_1:57475525-57475544 | Msa0030960:intron | 45.0% |
| AACACGTGAGACATGAGACA+TGG | - | chr1_1:57475678-57475697 | None:intergenic | 45.0% | |
| TTAGTTGTGTCCTGTGACCT+TGG | + | chr1_1:57475727-57475746 | Msa0030960:intron | 45.0% | |
| GGTTGCGAACTTTACAAGTC+AGG | + | chr1_1:57475748-57475767 | Msa0030960:intron | 45.0% | |
| ! | CATGAGTTGGCTTCACGATA+TGG | + | chr1_1:57476260-57476279 | Msa0030960:intron | 45.0% |
| ATGTTGCTAGAAATGGCGAG+AGG | - | chr1_1:57476300-57476319 | None:intergenic | 45.0% | |
| ! | TGTAGTTAGCCTGGTCTGAT+GGG | - | chr1_1:57476425-57476444 | None:intergenic | 45.0% |
| ! | TTGTAGTTAGCCTGGTCTGA+TGG | - | chr1_1:57476426-57476445 | None:intergenic | 45.0% |
| TGGAGAGATTGTAGTTAGCC+TGG | - | chr1_1:57476434-57476453 | None:intergenic | 45.0% | |
| AGCTTAATCCAACCCAAAGG+AGG | + | chr1_1:57476548-57476567 | Msa0030960:intron | 45.0% | |
| AGATTGTGGCTACCTCCTTT+GGG | - | chr1_1:57476563-57476582 | None:intergenic | 45.0% | |
| TAGATTGTGGCTACCTCCTT+TGG | - | chr1_1:57476564-57476583 | None:intergenic | 45.0% | |
| ! | GGTAATTGACTTACCATCCC+TGG | + | chr1_1:57476865-57476884 | Msa0030960:intron | 45.0% |
| TTCTAATCTGCAGGAACCAG+TGG | + | chr1_1:57477018-57477037 | Msa0030960:intron | 45.0% | |
| AACCAGTGGCATTCTTAGGT+GGG | + | chr1_1:57477032-57477051 | Msa0030960:CDS | 45.0% | |
| ! | ATGAGGAACCTCTGAAGGAA+TGG | + | chr1_1:57477086-57477105 | Msa0030960:CDS | 45.0% |
| ! | TGAGGAACCTCTGAAGGAAT+GGG | + | chr1_1:57477087-57477106 | Msa0030960:CDS | 45.0% |
| CTCATAACCCATTCCTTCAG+AGG | - | chr1_1:57477097-57477116 | None:intergenic | 45.0% | |
| !! | CTCTGAAGGAATGGGTTATG+AGG | + | chr1_1:57477095-57477114 | Msa0030960:CDS | 45.0% |
| ! | GCTTCAGTAGTTGATTCTGC+TGG | - | chr1_1:57477160-57477179 | None:intergenic | 45.0% |
| GTAGTTGCGAATCGGAACAG+AGG | + | chr1_1:57474849-57474868 | Msa0030960:five_prime_UTR | 50.0% | |
| ! | TGCTTCGGGTTCTGGTGATT+CGG | - | chr1_1:57475073-57475092 | None:intergenic | 50.0% |
| ATCACCAGAACCCGAAGCAT+CGG | + | chr1_1:57475074-57475093 | Msa0030960:CDS | 50.0% | |
| ! | AAAACCGATGCTTCGGGTTC+TGG | - | chr1_1:57475081-57475100 | None:intergenic | 50.0% |
| CTCCTAGCTGATCTTGTTGG+AGG | - | chr1_1:57475461-57475480 | None:intergenic | 50.0% | |
| CTCCAACAAGATCAGCTAGG+AGG | + | chr1_1:57475459-57475478 | Msa0030960:intron | 50.0% | |
| CCAACAAGATCAGCTAGGAG+GGG | + | chr1_1:57475461-57475480 | Msa0030960:intron | 50.0% | |
| AAGTTCGCAACCAAGGTCAC+AGG | - | chr1_1:57475740-57475759 | None:intergenic | 50.0% | |
| ! | CTAGAAATGGCGAGAGGTGT+AGG | - | chr1_1:57476294-57476313 | None:intergenic | 50.0% |
| TCTCCAATGACTGTGGAGCT+CGG | - | chr1_1:57476346-57476365 | None:intergenic | 50.0% | |
| CTAGCAATGAACGTTCCTGC+GGG | - | chr1_1:57476955-57476974 | None:intergenic | 50.0% | |
| CCTAGCAATGAACGTTCCTG+CGG | - | chr1_1:57476956-57476975 | None:intergenic | 50.0% | |
| CAGGAACCAGTGGCATTCTT+AGG | + | chr1_1:57477028-57477047 | Msa0030960:intron | 50.0% | |
| GAACCAGTGGCATTCTTAGG+TGG | + | chr1_1:57477031-57477050 | Msa0030960:CDS | 50.0% | |
| ATCCCACCTAAGAATGCCAC+TGG | - | chr1_1:57477037-57477056 | None:intergenic | 50.0% | |
| ! | GCTTCGGGTTCTGGTGATTC+GGG | - | chr1_1:57475072-57475091 | None:intergenic | 55.0% |
| ! | TTGACGAGAGGGTCTTGTGC+AGG | - | chr1_1:57475155-57475174 | None:intergenic | 55.0% |
| CCCCTCCTAGCTGATCTTGT+TGG | - | chr1_1:57475464-57475483 | None:intergenic | 55.0% | |
| AGTTGACGTGGTGGCTGAAG+TGG | + | chr1_1:57475489-57475508 | Msa0030960:intron | 55.0% | |
| !! | GCTCGGTGGAGTTGGTGAAA+TGG | - | chr1_1:57476329-57476348 | None:intergenic | 55.0% |
| AGCTCGAAACCCATCAGACC+AGG | + | chr1_1:57476413-57476432 | Msa0030960:intron | 55.0% | |
| TGTGGCTACCTCCTTTGGGT+TGG | - | chr1_1:57476559-57476578 | None:intergenic | 55.0% | |
| AAGCATTCTGTTCAGCCCGC+AGG | + | chr1_1:57476937-57476956 | Msa0030960:intron | 55.0% | |
| CCGCAGGAACGTTCATTGCT+AGG | + | chr1_1:57476953-57476972 | Msa0030960:intron | 55.0% | |
| CGGGTCCGCGAAAGTGATGA+TGG | - | chr1_1:57475053-57475072 | None:intergenic | 60.0% | |
| ! | GGAGGGGTGTGAAGTTGACG+TGG | + | chr1_1:57475477-57475496 | Msa0030960:intron | 60.0% |
| GGGGTGTGAAGTTGACGTGG+TGG | + | chr1_1:57475480-57475499 | Msa0030960:intron | 60.0% | |
| ! | ACTGTGGAGCTCGGTGGAGT+TGG | - | chr1_1:57476337-57476356 | None:intergenic | 60.0% |
| CCAATGACTGTGGAGCTCGG+TGG | - | chr1_1:57476343-57476362 | None:intergenic | 60.0% | |
| CCACCGAGCTCCACAGTCAT+TGG | + | chr1_1:57476340-57476359 | Msa0030960:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57474845 | 57477621 | 57474845 | ID=Msa0030960;Name=Msa0030960 |
| chr1_1 | mRNA | 57474845 | 57477621 | 57474845 | ID=Msa0030960-mRNA-1;Parent=Msa0030960;Name=Msa0030960-mRNA-1;_AED=0.07;_eAED=0.07;_QI=37|1|1|1|1|1|3|414|128 |
| chr1_1 | exon | 57474845 | 57474935 | 57474845 | ID=Msa0030960-mRNA-1:exon:17334;Parent=Msa0030960-mRNA-1 |
| chr1_1 | exon | 57475032 | 57475187 | 57475032 | ID=Msa0030960-mRNA-1:exon:17335;Parent=Msa0030960-mRNA-1 |
| chr1_1 | exon | 57477031 | 57477621 | 57477031 | ID=Msa0030960-mRNA-1:exon:17336;Parent=Msa0030960-mRNA-1 |
| chr1_1 | five_prime_UTR | 57474845 | 57474881 | 57474845 | ID=Msa0030960-mRNA-1:five_prime_utr;Parent=Msa0030960-mRNA-1 |
| chr1_1 | CDS | 57474882 | 57474935 | 57474882 | ID=Msa0030960-mRNA-1:cds;Parent=Msa0030960-mRNA-1 |
| chr1_1 | CDS | 57475032 | 57475187 | 57475032 | ID=Msa0030960-mRNA-1:cds;Parent=Msa0030960-mRNA-1 |
| chr1_1 | CDS | 57477031 | 57477207 | 57477031 | ID=Msa0030960-mRNA-1:cds;Parent=Msa0030960-mRNA-1 |
| chr1_1 | three_prime_UTR | 57477208 | 57477621 | 57477208 | ID=Msa0030960-mRNA-1:three_prime_utr;Parent=Msa0030960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
