AlfalfaGEDB | Msa1355490

M. sativa cultivar zhongmu-4 / Msa1355490

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355490	XP_024637122.1	96.552	58	2	0	1	58	74	131	2.49e-29	110

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355490	sp\|Q9FZ89\|Y1815_ARATH	70.000	60	16	1	1	58	64	123	8.08e-22	84.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355490	A0A072VXV9	96.552	58	2	0	1	58	73	130	1.22e-29	110

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030960	Msa1355490	0.859046	5.421099e-63	-8.615850e-47
Msa0042210	Msa1355490	0.802983	4.329769e-49	-8.615850e-47
Msa0126000	Msa1355490	0.812323	4.491300e-51	-8.615850e-47
Msa0168470	Msa1355490	0.813180	2.916733e-51	-8.615850e-47
Msa0293000	Msa1355490	0.820822	5.598683e-53	-8.615850e-47
Msa0331060	Msa1355490	0.814267	1.680887e-51	-8.615850e-47
Msa0441840	Msa1355490	0.806409	8.342985e-50	-8.615850e-47
Msa0450390	Msa1355490	0.817687	2.897374e-52	-8.615850e-47
Msa0489460	Msa1355490	0.806808	6.871413e-50	-8.615850e-47
Msa0780780	Msa1355490	0.806335	8.649384e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355490	MtrunA17_Chr1g0188791	96.552	58	2	0	1	58	73	130	2.35e-33	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355490	AT1G28150.1	70.000	60	16	1	1	58	64	123	8.21e-23	84.0
Msa1355490	AT1G28150.2	70.000	60	16	1	1	58	64	123	8.21e-23	84.0

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Find 15 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAGTGGCATTCTTAGGT+GGG	0.598806	tig0014794:-55848	Msa1355490:CDS
AGTAGTTGATTCTTCTGGAT+TGG	0.410215	tig0014794:+55728	None:intergenic
ATCCCACCTAAGAATGCCAC+TGG	0.574031	tig0014794:+55846	None:intergenic
ATGAGGAACCTCTGAAGGAA+TGG	0.505614	tig0014794:-55794	Msa1355490:CDS
CAGGAACCAGTGGCATTCTT+AGG	0.325742	tig0014794:-55852	Msa1355490:CDS
CTCGTAACCCATTCCTTCAG+AGG	0.539677	tig0014794:+55786	None:intergenic
CTCTGAAGGAATGGGTTACG+AGG	0.596910	tig0014794:-55785	Msa1355490:CDS
GAACCAGTGGCATTCTTAGG+TGG	0.545711	tig0014794:-55849	Msa1355490:CDS
GCTTCAGTAGTTGATTCTTC+TGG	0.258189	tig0014794:+55723	None:intergenic
TATTCAATTTCAATCTCTTG+TGG	0.483856	tig0014794:+55696	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTAGGTGGGATATTTGC+TGG	-	tig0014794:55707-55726	Msa1355490:CDS	40.0%
TTTGAATGAGGAACCTCTGA+AGG	-	tig0014794:55745-55764	Msa1355490:CDS	40.0%
TTCTTAGGTGGGATATTTGC+TGG	-	tig0014794:55707-55726	Msa1355490:CDS	40.0%
TTTGAATGAGGAACCTCTGA+AGG	-	tig0014794:55745-55764	Msa1355490:CDS	40.0%
AACCAGTGGCATTCTTAGGT+GGG	-	tig0014794:55696-55715	Msa1355490:CDS	45.0%
AACCAGTGGCATTCTTAGGT+GGG	-	tig0014794:55696-55715	Msa1355490:CDS	45.0%
GAACCAGTGGCATTCTTAGG+TGG	-	tig0014794:55695-55714	Msa1355490:CDS	50.0%
ATCCCACCTAAGAATGCCAC+TGG	+	tig0014794:55701-55720	None:intergenic	50.0%
CTCGTAACCCATTCCTTCAG+AGG	+	tig0014794:55761-55780	None:intergenic	50.0%
GAACCAGTGGCATTCTTAGG+TGG	-	tig0014794:55695-55714	Msa1355490:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0014794	gene	55695	55871	55695	ID=Msa1355490;Name=Msa1355490
tig0014794	mRNA	55695	55871	55695	ID=Msa1355490-mRNA-1;Parent=Msa1355490;Name=Msa1355490-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|58
tig0014794	exon	55695	55871	55695	ID=Msa1355490-mRNA-1:exon:9483;Parent=Msa1355490-mRNA-1
tig0014794	CDS	55695	55871	55695	ID=Msa1355490-mRNA-1:cds;Parent=Msa1355490-mRNA-1

Gene Sequence	>Msa1355490 GAACCAGTGGCATTCTTAGGTGGGATATTTGCTGGTATTTTAAGGCTTGATTTGAATGAGGAACCTCTGAAGGAATGGGTTACGAGGACTGTTGAAGCTTCTGATATTAGTGAAGAAGAAACCAATCCAGAAGAATCAACTACTGAAGCTGCTCCACAAGAGATTGAAATTGAATAA
Protein sequence	>Msa1355490 EPVAFLGGIFAGILRLDLNEEPLKEWVTRTVEASDISEEETNPEESTTEAAPQEIEIE*