Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031140 | sp|Q6R3L0|YSL1_ARATH | 70.915 | 667 | 189 | 2 | 16 | 680 | 10 | 673 | 0.0 | 1001 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031140 | Msa0078370 | 0.825346 | 4.929142e-54 | -8.615850e-47 |
| Msa0031140 | Msa0126150 | 0.830694 | 2.542733e-55 | -8.615850e-47 |
| Msa0031140 | Msa0171080 | 0.995877 | 7.049750e-221 | -8.615850e-47 |
| Msa0031140 | Msa0457370 | 0.804872 | 1.753604e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031140 | MtrunA17_Chr1g0189011 | 99.118 | 680 | 6 | 0 | 1 | 680 | 1 | 680 | 0.0 | 1385 |
| Msa0031140 | MtrunA17_Chr3g0127441 | 64.680 | 671 | 222 | 3 | 17 | 680 | 4 | 666 | 0.0 | 917 |
| Msa0031140 | MtrunA17_Chr1g0146651 | 62.556 | 673 | 243 | 5 | 11 | 680 | 6 | 672 | 0.0 | 874 |
| Msa0031140 | MtrunA17_Chr3g0119981 | 62.388 | 670 | 243 | 5 | 11 | 677 | 6 | 669 | 0.0 | 867 |
| Msa0031140 | MtrunA17_Chr1g0146591 | 62.236 | 662 | 245 | 4 | 23 | 680 | 15 | 675 | 0.0 | 864 |
| Msa0031140 | MtrunA17_Chr1g0146641 | 61.934 | 662 | 247 | 4 | 23 | 680 | 15 | 675 | 0.0 | 862 |
| Msa0031140 | MtrunA17_Chr7g0224611 | 53.521 | 639 | 288 | 5 | 46 | 677 | 37 | 673 | 0.0 | 726 |
| Msa0031140 | MtrunA17_Chr6g0481821 | 51.794 | 641 | 294 | 7 | 47 | 679 | 66 | 699 | 0.0 | 712 |
| Msa0031140 | MtrunA17_Chr5g0443261 | 51.274 | 667 | 312 | 7 | 22 | 679 | 7 | 669 | 0.0 | 704 |
| Msa0031140 | MtrunA17_Chr3g0109311 | 53.052 | 639 | 291 | 5 | 47 | 679 | 48 | 683 | 0.0 | 697 |
| Msa0031140 | MtrunA17_Chr3g0109321 | 52.582 | 639 | 294 | 5 | 47 | 679 | 42 | 677 | 0.0 | 674 |
| Msa0031140 | MtrunA17_Chr1g0146601 | 63.265 | 490 | 179 | 1 | 192 | 680 | 261 | 750 | 0.0 | 671 |
| Msa0031140 | MtrunA17_Chr1g0146601 | 58.511 | 188 | 65 | 5 | 11 | 196 | 25 | 201 | 9.03e-55 | 200 |
| Msa0031140 | MtrunA17_Chr5g0443301 | 52.075 | 530 | 248 | 4 | 156 | 679 | 11 | 540 | 0.0 | 569 |
| Msa0031140 | MtrunA17_Chr5g0443291 | 50.435 | 115 | 53 | 2 | 22 | 133 | 7 | 120 | 9.53e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031140 | AT4G24120.1 | 70.915 | 667 | 189 | 2 | 16 | 680 | 10 | 673 | 0.0 | 1001 |
| Msa0031140 | AT5G53550.3 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 907 |
| Msa0031140 | AT5G53550.1 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 907 |
| Msa0031140 | AT5G53550.6 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 907 |
| Msa0031140 | AT5G53550.5 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 907 |
| Msa0031140 | AT5G53550.2 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 907 |
| Msa0031140 | AT5G24380.1 | 63.514 | 666 | 231 | 4 | 20 | 680 | 5 | 663 | 0.0 | 900 |
| Msa0031140 | AT1G65730.1 | 52.353 | 680 | 299 | 9 | 19 | 679 | 1 | 674 | 0.0 | 730 |
| Msa0031140 | AT3G27020.1 | 51.343 | 670 | 311 | 6 | 20 | 677 | 4 | 670 | 0.0 | 721 |
| Msa0031140 | AT5G41000.1 | 51.940 | 670 | 314 | 4 | 18 | 680 | 2 | 670 | 0.0 | 720 |
| Msa0031140 | AT5G53550.4 | 64.579 | 511 | 178 | 2 | 171 | 680 | 1 | 509 | 0.0 | 711 |
| Msa0031140 | AT1G48370.1 | 52.207 | 657 | 293 | 7 | 40 | 680 | 59 | 710 | 0.0 | 686 |
| Msa0031140 | AT5G41000.2 | 50.526 | 665 | 306 | 4 | 18 | 680 | 2 | 645 | 0.0 | 682 |
| Msa0031140 | AT3G17650.1 | 50.533 | 657 | 305 | 7 | 39 | 680 | 49 | 700 | 0.0 | 676 |
| Msa0031140 | AT3G17650.2 | 50.533 | 657 | 305 | 7 | 39 | 680 | 49 | 700 | 0.0 | 676 |
| Msa0031140 | AT1G48370.2 | 52.505 | 539 | 242 | 5 | 156 | 680 | 9 | 547 | 0.0 | 570 |
| Msa0031140 | AT5G41000.3 | 51.717 | 495 | 231 | 4 | 193 | 680 | 1 | 494 | 0.0 | 534 |
| Msa0031140 | AT5G45450.1 | 48.558 | 208 | 100 | 2 | 474 | 680 | 1 | 202 | 8.58e-66 | 216 |
Find 167 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGTTCGACATTGCTTTA+TGG | 0.147135 | 1_1:-57748435 | None:intergenic |
| CTTGCATTCTGCAACGCTTT+TGG | 0.182277 | 1_1:+57747687 | Msa0031140:CDS |
| CATTGCTTGCAACTTTGTTT+TGG | 0.185014 | 1_1:+57748089 | Msa0031140:CDS |
| AGAATGTTTGAGCTTGTTTA+AGG | 0.190142 | 1_1:-57747527 | None:intergenic |
| TGACAAATAACACAGGTTTC+TGG | 0.210672 | 1_1:+57748593 | Msa0031140:three_prime_UTR |
| AACCATCAACTCTGCTTTCT+TGG | 0.226520 | 1_1:-57748285 | None:intergenic |
| CTTGGAGCTGTGCTCTCTTA+TGG | 0.235520 | 1_1:+57747151 | Msa0031140:CDS |
| GCAGATAGGCGGATTAATTT+TGG | 0.237022 | 1_1:-57748378 | None:intergenic |
| CAAGAGCAAGAACCATAAAA+AGG | 0.240574 | 1_1:+57747357 | Msa0031140:CDS |
| CTAAACATCAACATGGAATT+TGG | 0.250698 | 1_1:+57745634 | Msa0031140:CDS |
| GCAGCAGAGACATTCAAATT+TGG | 0.267639 | 1_1:-57745853 | None:intergenic |
| AATGTTCGACATTGCTTTAT+GGG | 0.269475 | 1_1:-57748434 | None:intergenic |
| GAAGGGTTTATATGGTTATA+AGG | 0.272710 | 1_1:+57747243 | Msa0031140:CDS |
| CCTGCATTTGGTTGGATGTC+TGG | 0.275545 | 1_1:+57746409 | Msa0031140:CDS |
| TACCGTATCCGCGCCTTTGC+TGG | 0.281051 | 1_1:+57745387 | Msa0031140:five_prime_UTR |
| AATTCCATGTTGATGTTTAG+TGG | 0.299995 | 1_1:-57745631 | None:intergenic |
| ACTAACATGAAGGGTTTATA+TGG | 0.306840 | 1_1:+57747235 | Msa0031140:CDS |
| ACAGAAACATGGCAGTTATA+GGG | 0.308924 | 1_1:+57748039 | Msa0031140:CDS |
| TCACACACAGGATGATAAAA+TGG | 0.314433 | 1_1:+57746703 | Msa0031140:CDS |
| TTTGAACAGTTTCCAACCTT+TGG | 0.315680 | 1_1:+57746931 | Msa0031140:CDS |
| CTGTCCAATGTTCATCAGAT+TGG | 0.320759 | 1_1:-57745735 | None:intergenic |
| TACAGAAACATGGCAGTTAT+AGG | 0.321915 | 1_1:+57748038 | Msa0031140:CDS |
| CAACAAAGCAAACAACAAAA+AGG | 0.327369 | 1_1:-57746435 | None:intergenic |
| CTCCAAGAAAGCAGAGTTGA+TGG | 0.329189 | 1_1:+57748283 | Msa0031140:CDS |
| CAACCTTTGGATTGCAAGCT+TGG | 0.329374 | 1_1:+57746944 | Msa0031140:CDS |
| CGATATGTGCACGGGTAGTT+TGG | 0.340781 | 1_1:+57748235 | Msa0031140:CDS |
| TGCTATAGCATTGCTGTTAG+TGG | 0.359669 | 1_1:+57745991 | Msa0031140:CDS |
| TTTCTGTAAATTAGTGCATA+AGG | 0.363611 | 1_1:-57748023 | None:intergenic |
| TTGCCTCCGGACTAATTTGC+GGG | 0.369228 | 1_1:+57748315 | Msa0031140:CDS |
| GAAGAAAGGTTGCCAGTTAT+AGG | 0.369530 | 1_1:+57745700 | Msa0031140:CDS |
| ATTACTTCAGCTCCTATAAC+TGG | 0.372038 | 1_1:-57745712 | None:intergenic |
| TTGGAACCATTCCTGTTGTA+AGG | 0.381075 | 1_1:-57745834 | None:intergenic |
| TCGACATTGCTTTATGGGTT+GGG | 0.382065 | 1_1:-57748429 | None:intergenic |
| GTATTAATGCCATTAGTATA+TGG | 0.383869 | 1_1:-57748547 | None:intergenic |
| CATCAAATGCTTTGTAGAAC+AGG | 0.389070 | 1_1:-57747971 | None:intergenic |
| TGGATCGGGGTAGTTGGATA+TGG | 0.389113 | 1_1:+57747570 | Msa0031140:CDS |
| GGATTTGCTTCTTACCTGTT+GGG | 0.389382 | 1_1:+57746316 | Msa0031140:CDS |
| TTCGACATTGCTTTATGGGT+TGG | 0.392532 | 1_1:-57748430 | None:intergenic |
| GTGAACTTGTCTCTGCTCCT+TGG | 0.393687 | 1_1:+57747133 | Msa0031140:CDS |
| GCATGTTTCCTCAGCTGAAA+TGG | 0.394853 | 1_1:+57747628 | Msa0031140:CDS |
| CTATCAATTGCTCTAATCCT+TGG | 0.398456 | 1_1:+57747271 | Msa0031140:CDS |
| ATTAGTCCGGAGGCAATTGC+TGG | 0.399478 | 1_1:-57748308 | None:intergenic |
| TCTTATGGGGTTTCTTTAAG+TGG | 0.406690 | 1_1:+57746881 | Msa0031140:CDS |
| GCAACAGCGGTTCTCATCAA+TGG | 0.410553 | 1_1:+57746677 | Msa0031140:CDS |
| AGAGCATTCCAATGTGGATC+GGG | 0.417671 | 1_1:+57747556 | Msa0031140:CDS |
| ACAAGCTCAAACATTCTTGA+AGG | 0.418237 | 1_1:+57747533 | Msa0031140:CDS |
| TTGATGTTTAGTGGACTTGA+TGG | 0.419351 | 1_1:-57745622 | None:intergenic |
| GCAGTTAAAGAACCTGCATT+TGG | 0.420611 | 1_1:+57746397 | Msa0031140:CDS |
| CTTACCTGTTGGGATTAAAC+AGG | 0.421340 | 1_1:+57746326 | Msa0031140:CDS |
| CAGGTTCTTTAACTGCGCTT+GGG | 0.424884 | 1_1:-57746390 | None:intergenic |
| TTCTGTAAATTAGTGCATAA+GGG | 0.426176 | 1_1:-57748022 | None:intergenic |
| GCAGGTTCTTTAACTGCGCT+TGG | 0.426747 | 1_1:-57746391 | None:intergenic |
| AGGATTTGCTTCTTACCTGT+TGG | 0.428296 | 1_1:+57746315 | Msa0031140:CDS |
| AACAGCACAAGTCTGAATAA+TGG | 0.434716 | 1_1:-57745965 | None:intergenic |
| GACAGTTGAAACTAGAATCT+TGG | 0.437254 | 1_1:-57747314 | None:intergenic |
| TGGAATACAGTTCTTGCTGC+AGG | 0.438378 | 1_1:+57748613 | Msa0031140:three_prime_UTR |
| TCTTCCTGTTTAATCCCAAC+AGG | 0.440272 | 1_1:-57746330 | None:intergenic |
| TCGATCGGCGTAAAGGAAAC+TGG | 0.440797 | 1_1:+57747191 | Msa0031140:CDS |
| GCTTGTTTAAGGTCACCATT+TGG | 0.442681 | 1_1:-57747516 | None:intergenic |
| ATGGCAGTTATAGGGGTTCA+AGG | 0.442747 | 1_1:+57748047 | Msa0031140:CDS |
| TTCCAGCAAAGGCGCGGATA+CGG | 0.448707 | 1_1:-57745389 | None:intergenic |
| ACAGAACACATAACAATAAG+AGG | 0.457854 | 1_1:+57745754 | Msa0031140:CDS |
| CCATCGCAGTGCCAACTACT+TGG | 0.458126 | 1_1:-57747920 | None:intergenic |
| AGGAAGACATATATATTGTC+TGG | 0.461260 | 1_1:+57746346 | Msa0031140:CDS |
| ATTCTAGTTTCAACTGTCCT+TGG | 0.462241 | 1_1:+57747319 | Msa0031140:CDS |
| ATTGCACACGCACCTCTCCC+AGG | 0.462537 | 1_1:+57747883 | Msa0031140:CDS |
| GGTGTAGTGGCAGCACTTGT+TGG | 0.470788 | 1_1:+57747795 | Msa0031140:CDS |
| CCGCTCGTCGATCGGCGTAA+AGG | 0.473893 | 1_1:+57747184 | Msa0031140:CDS |
| GTTGCAAAACCACTTGGATA+AGG | 0.475631 | 1_1:-57746659 | None:intergenic |
| TTGGCATACGAACATCGCCC+TGG | 0.477283 | 1_1:-57747901 | None:intergenic |
| TCCTTCCCCGCAAATTAGTC+CGG | 0.483208 | 1_1:-57748321 | None:intergenic |
| TGTCTTAATTCCACTCAGAA+AGG | 0.483712 | 1_1:+57746465 | Msa0031140:CDS |
| CCAATGTGGATCGGGGTAGT+TGG | 0.486909 | 1_1:+57747564 | Msa0031140:CDS |
| AAGTATGCCCCTACCAGAAA+AGG | 0.489539 | 1_1:-57748206 | None:intergenic |
| CAAGCTTGCAATCCAAAGGT+TGG | 0.490018 | 1_1:-57746943 | None:intergenic |
| TCCGGACTAATTTGCGGGGA+AGG | 0.492676 | 1_1:+57748320 | Msa0031140:CDS |
| GTGGCAGCACTTGTTGGTTG+TGG | 0.492912 | 1_1:+57747801 | Msa0031140:CDS |
| ACTGTGACAGGAAAAGAAAA+TGG | 0.493538 | 1_1:+57747774 | Msa0031140:CDS |
| ATAAACATGGCATATAACTA+CGG | 0.499123 | 1_1:+57747726 | Msa0031140:CDS |
| ATGAAGTTGAACCTTACAAC+AGG | 0.502367 | 1_1:+57745823 | Msa0031140:CDS |
| CAGAAACATGGCAGTTATAG+GGG | 0.504777 | 1_1:+57748040 | Msa0031140:CDS |
| TACGAACATCGCCCTGGGAG+AGG | 0.508872 | 1_1:-57747895 | None:intergenic |
| TTGTTTGTGAGTATGATGAT+TGG | 0.510508 | 1_1:+57745778 | Msa0031140:CDS |
| CAAGTAGTTGGCACTGCGAT+GGG | 0.512978 | 1_1:+57747921 | Msa0031140:CDS |
| ATGGTTCCAGCAATTGCCTC+CGG | 0.514863 | 1_1:+57748302 | Msa0031140:CDS |
| CCAAGTAGTTGGCACTGCGA+TGG | 0.514917 | 1_1:+57747920 | Msa0031140:CDS |
| GAGAAAGAACAAATAAACTA+AGG | 0.515796 | 1_1:+57745462 | Msa0031140:five_prime_UTR |
| CTTCCAAGCTTGCAATCCAA+AGG | 0.518270 | 1_1:-57746947 | None:intergenic |
| AGAACATTACCATATACTAA+TGG | 0.518616 | 1_1:+57748538 | Msa0031140:three_prime_UTR |
| TTAATCAGAACATGGAAGAA+AGG | 0.519391 | 1_1:+57745686 | Msa0031140:CDS |
| GCAAAGGCGCGGATACGGTA+TGG | 0.521818 | 1_1:-57745384 | None:intergenic |
| ATTGCCTCCGGACTAATTTG+CGG | 0.522806 | 1_1:+57748314 | Msa0031140:CDS |
| TTAAAGAACCTGCATTTGGT+TGG | 0.523266 | 1_1:+57746401 | Msa0031140:CDS |
| CATATATATTGTCTGGAGTA+GGG | 0.531337 | 1_1:+57746353 | Msa0031140:CDS |
| CTTAGAAGAAACTAACATGA+AGG | 0.531827 | 1_1:+57747225 | Msa0031140:CDS |
| ACCGCTGTTGCAAAACCACT+TGG | 0.532997 | 1_1:-57746665 | None:intergenic |
| TTATGTATCCGCTCGTCGAT+CGG | 0.538651 | 1_1:+57747176 | Msa0031140:CDS |
| TCTCATTAAATCCGTGATCT+CGG | 0.542009 | 1_1:+57747824 | Msa0031140:CDS |
| ACATATATATTGTCTGGAGT+AGG | 0.542660 | 1_1:+57746352 | Msa0031140:CDS |
| TATTGCAGGAAGCAAGTGCA+TGG | 0.546997 | 1_1:+57746832 | Msa0031140:intron |
| TCTGTAAATTAGTGCATAAG+GGG | 0.547725 | 1_1:-57748021 | None:intergenic |
| TAAACATGGCATATAACTAC+GGG | 0.549716 | 1_1:+57747727 | Msa0031140:CDS |
| AAAGGTACGGCCATGACCAT+TGG | 0.552599 | 1_1:-57748188 | None:intergenic |
| CCAACTACCCCGATCCACAT+TGG | 0.553126 | 1_1:-57747564 | None:intergenic |
| TAATCCAATCTGATGAACAT+TGG | 0.553322 | 1_1:+57745731 | Msa0031140:CDS |
| TTCTACAAAGCATTTGATGT+GGG | 0.553517 | 1_1:+57747975 | Msa0031140:CDS |
| AAGATGCTTTCTTCCAGCAA+AGG | 0.555540 | 1_1:-57745400 | None:intergenic |
| GGGCTTTGAATTCTCCATGT+GGG | 0.558789 | 1_1:-57748001 | None:intergenic |
| GTAACAAATTTCATGCAGAT+AGG | 0.560658 | 1_1:-57748392 | None:intergenic |
| CCAGACATCCAACCAAATGC+AGG | 0.560714 | 1_1:-57746409 | None:intergenic |
| ACGGCCATGACCATTGGTAA+TGG | 0.563697 | 1_1:-57748182 | None:intergenic |
| GAGAGCATTCCAATGTGGAT+CGG | 0.564131 | 1_1:+57747555 | Msa0031140:CDS |
| TTGTCTGGAGTAGGGACTGA+GGG | 0.566557 | 1_1:+57746361 | Msa0031140:CDS |
| CTCAATTTACCTTATCCAAG+TGG | 0.567851 | 1_1:+57746650 | Msa0031140:CDS |
| AGCAATGTCGAACATTAGCT+AGG | 0.568216 | 1_1:+57748441 | Msa0031140:three_prime_UTR |
| TTAGAAGAAACTAACATGAA+GGG | 0.576320 | 1_1:+57747226 | Msa0031140:CDS |
| GTTGAACCTTACAACAGGAA+TGG | 0.576347 | 1_1:+57745828 | Msa0031140:CDS |
| CACTTGGATAAGGTAAATTG+AGG | 0.578530 | 1_1:-57746649 | None:intergenic |
| GCTAGAGCAAGAATAGCAGC+AGG | 0.581993 | 1_1:-57748356 | None:intergenic |
| CTTTGCAATCGATATGTGCA+CGG | 0.585680 | 1_1:+57748226 | Msa0031140:CDS |
| CAGAGACAAGTTCACAAGGT+GGG | 0.586027 | 1_1:-57747125 | None:intergenic |
| TGATTCTTTCATGTACGCCA+AGG | 0.587279 | 1_1:-57747336 | None:intergenic |
| TGGCATACGAACATCGCCCT+GGG | 0.590951 | 1_1:-57747900 | None:intergenic |
| TTGCACACGCACCTCTCCCA+GGG | 0.591980 | 1_1:+57747884 | Msa0031140:CDS |
| CCTTTACGCCGATCGACGAG+CGG | 0.592216 | 1_1:-57747184 | None:intergenic |
| GCAATGTCGAACATTAGCTA+GGG | 0.594077 | 1_1:+57748442 | Msa0031140:three_prime_UTR |
| GATGCCATTACCAATGGTCA+TGG | 0.594138 | 1_1:+57748178 | Msa0031140:CDS |
| GCGTTGCAGAATGCAAGAGA+TGG | 0.596604 | 1_1:-57747681 | None:intergenic |
| GTTCTACAAAGCATTTGATG+TGG | 0.597381 | 1_1:+57747974 | Msa0031140:CDS |
| ATTGCAAGACACCGAGATCA+CGG | 0.597470 | 1_1:-57747835 | None:intergenic |
| TGCCCCTACCAGAAAAGGTA+CGG | 0.600276 | 1_1:-57748201 | None:intergenic |
| CATAAGAGAGCACAGCTCCA+AGG | 0.601707 | 1_1:-57747150 | None:intergenic |
| GATCTGCACGGGAATCCAAA+TGG | 0.602302 | 1_1:+57747501 | Msa0031140:CDS |
| ACAAATTTCATGCAGATAGG+CGG | 0.603089 | 1_1:-57748389 | None:intergenic |
| TCAGCTGAGGAAACATGCGC+GGG | 0.603914 | 1_1:-57747623 | None:intergenic |
| TTAGCTGCTGATGATCTGCA+CGG | 0.611628 | 1_1:+57747489 | Msa0031140:CDS |
| ATTGCTCTAATCCTTGGTGA+TGG | 0.613675 | 1_1:+57747277 | Msa0031140:CDS |
| TAGCTGCTGATGATCTGCAC+GGG | 0.614301 | 1_1:+57747490 | Msa0031140:CDS |
| GCTTTCTTCCAGCAAAGGCG+CGG | 0.616342 | 1_1:-57745395 | None:intergenic |
| AGGAAAAGAAAATGGTGTAG+TGG | 0.618420 | 1_1:+57747782 | Msa0031140:CDS |
| ATGTTCGTATGCCAAGTAGT+TGG | 0.622489 | 1_1:+57747909 | Msa0031140:CDS |
| TGCACTAATTTACAGAAACA+TGG | 0.622591 | 1_1:+57748028 | Msa0031140:CDS |
| TTCAGCTGAGGAAACATGCG+CGG | 0.629166 | 1_1:-57747624 | None:intergenic |
| GAAATGGATGCCATTACCAA+TGG | 0.632319 | 1_1:+57748172 | Msa0031140:CDS |
| TTTGCAATCGATATGTGCAC+GGG | 0.633896 | 1_1:+57748227 | Msa0031140:CDS |
| TTTGATGTGGGAAACCCACA+TGG | 0.634234 | 1_1:+57747987 | Msa0031140:CDS |
| TAATTTGCGGGGAAGGACTG+TGG | 0.634672 | 1_1:+57748327 | Msa0031140:CDS |
| ACATAGTACCATTTCAGCTG+AGG | 0.638500 | 1_1:-57747636 | None:intergenic |
| TTCTCAGGCAAAGAAGACTG+TGG | 0.640879 | 1_1:+57746907 | Msa0031140:CDS |
| AAGAGATATTAATCAGAACA+TGG | 0.647672 | 1_1:+57745678 | Msa0031140:CDS |
| TTCCCCGCAAATTAGTCCGG+AGG | 0.648987 | 1_1:-57748318 | None:intergenic |
| ATTGCAGGAAGCAAGTGCAT+GGG | 0.652006 | 1_1:+57746833 | Msa0031140:intron |
| CAAAGTTGCAAGCAATGTCG+AGG | 0.653267 | 1_1:-57748083 | None:intergenic |
| GGAGCAGAGACAAGTTCACA+AGG | 0.657179 | 1_1:-57747129 | None:intergenic |
| ATTGTCTGGAGTAGGGACTG+AGG | 0.658990 | 1_1:+57746360 | Msa0031140:CDS |
| TGCCTCCGGACTAATTTGCG+GGG | 0.659474 | 1_1:+57748316 | Msa0031140:CDS |
| AAGTCCACTAAACATCAACA+TGG | 0.666317 | 1_1:+57745627 | Msa0031140:CDS |
| ATACTACAAACCTTTCTGAG+TGG | 0.669560 | 1_1:-57746475 | None:intergenic |
| GAGCATTCCAATGTGGATCG+GGG | 0.670545 | 1_1:+57747557 | Msa0031140:CDS |
| AAGTAGTTGGCACTGCGATG+GGG | 0.675338 | 1_1:+57747922 | Msa0031140:CDS |
| AGAATTCTGACAAATAACAC+AGG | 0.675707 | 1_1:+57748586 | Msa0031140:three_prime_UTR |
| GGGGCTTTGAATTCTCCATG+TGG | 0.676243 | 1_1:-57748002 | None:intergenic |
| TGAAGGAGAGCATTCCAATG+TGG | 0.677015 | 1_1:+57747550 | Msa0031140:CDS |
| TAGAACAGGAAGAAGCTCAG+AGG | 0.680521 | 1_1:-57747957 | None:intergenic |
| AGGTCTCACTGATATAAACA+TGG | 0.684403 | 1_1:+57747713 | Msa0031140:CDS |
| GCAGAGACAAGTTCACAAGG+TGG | 0.689164 | 1_1:-57747126 | None:intergenic |
| AAGTATATACGCCATCACCA+AGG | 0.720711 | 1_1:-57747288 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTAATTAATATTAGATAT+TGG | + | chr1_1:57746556-57746575 | Msa0031140:intron | 10.0% |
| !! | AATTTGGAAAAAAAATATAA+AGG | + | chr1_1:57746778-57746797 | Msa0031140:intron | 10.0% |
| !! | GAAAATAATAAATATGTAGT+AGG | - | chr1_1:57746030-57746049 | None:intergenic | 15.0% |
| !! | TAATATTAATTAACTGTAGA+TGG | - | chr1_1:57746551-57746570 | None:intergenic | 15.0% |
| !! | TGCAATATTATAATATAAGA+TGG | - | chr1_1:57746819-57746838 | None:intergenic | 15.0% |
| !! | ATCTTATATTATAATATTGC+AGG | + | chr1_1:57746818-57746837 | Msa0031140:intron | 15.0% |
| !! | GTGACAAAAAAAAAAAAAAA+AGG | - | chr1_1:57748470-57748489 | None:intergenic | 15.0% |
| !!! | TTAATTAGACACTGATTTTT+TGG | - | chr1_1:57746593-57746612 | None:intergenic | 20.0% |
| !! | TCAAGCATATTATATATAGT+TGG | + | chr1_1:57746988-57747007 | Msa0031140:intron | 20.0% |
| !! | CATATTATATATAGTTGGTT+TGG | + | chr1_1:57746993-57747012 | Msa0031140:intron | 20.0% |
| !! | TCGTTACTAATCTTATTATT+TGG | + | chr1_1:57747038-57747057 | Msa0031140:intron | 20.0% |
| !! | CGTTACTAATCTTATTATTT+GGG | + | chr1_1:57747039-57747058 | Msa0031140:intron | 20.0% |
| !! | TGAAAAATTCAAAAGAAGAA+AGG | - | chr1_1:57747405-57747424 | None:intergenic | 20.0% |
| ! | GAGAAAGAACAAATAAACTA+AGG | + | chr1_1:57745462-57745481 | Msa0031140:five_prime_UTR | 25.0% |
| ! | TAATATAGTAAAGTTGTGAC+AGG | + | chr1_1:57745571-57745590 | Msa0031140:intron | 25.0% |
| ! | AAGAGATATTAATCAGAACA+TGG | + | chr1_1:57745678-57745697 | Msa0031140:CDS | 25.0% |
| !! | TCTGAATAATGGTATTTTCT+TGG | - | chr1_1:57745957-57745976 | None:intergenic | 25.0% |
| ! | AGGTTTGTAGTATAATACTT+TGG | + | chr1_1:57746485-57746504 | Msa0031140:intron | 25.0% |
| !!! | AACTTTTGTTTGTTGCAATT+TGG | + | chr1_1:57746762-57746781 | Msa0031140:intron | 25.0% |
| !!! | ATTTTTCGATCAGTTTCTTA+TGG | + | chr1_1:57746866-57746885 | Msa0031140:CDS | 25.0% |
| !!! | TTTTTCGATCAGTTTCTTAT+GGG | + | chr1_1:57746867-57746886 | Msa0031140:CDS | 25.0% |
| !! | TAGTTTCTTCTAAGTTTTCA+GGG | - | chr1_1:57747219-57747238 | None:intergenic | 25.0% |
| !! | TTAGTTTCTTCTAAGTTTTC+AGG | - | chr1_1:57747220-57747239 | None:intergenic | 25.0% |
| ! | TTAGAAGAAACTAACATGAA+GGG | + | chr1_1:57747226-57747245 | Msa0031140:CDS | 25.0% |
| ! | ATAAACATGGCATATAACTA+CGG | + | chr1_1:57747726-57747745 | Msa0031140:CDS | 25.0% |
| ! | TTCTGTAAATTAGTGCATAA+GGG | - | chr1_1:57748025-57748044 | None:intergenic | 25.0% |
| ! | TTTCTGTAAATTAGTGCATA+AGG | - | chr1_1:57748026-57748045 | None:intergenic | 25.0% |
| !! | ATTTTTCACCCAAAAAGATT+GGG | + | chr1_1:57748150-57748169 | Msa0031140:CDS | 25.0% |
| !!! | TTTTTTTTTGTCACTGTTTG+TGG | + | chr1_1:57748476-57748495 | Msa0031140:three_prime_UTR | 25.0% |
| ! | AGAACATTACCATATACTAA+TGG | + | chr1_1:57748538-57748557 | Msa0031140:three_prime_UTR | 25.0% |
| ! | GTATTAATGCCATTAGTATA+TGG | - | chr1_1:57748550-57748569 | None:intergenic | 25.0% |
| !!! | TTTTTCTGTTAGTTTTGTTG+GGG | - | chr1_1:57748651-57748670 | None:intergenic | 25.0% |
| !!! | GTTTTTCTGTTAGTTTTGTT+GGG | - | chr1_1:57748652-57748671 | None:intergenic | 25.0% |
| ! | ATAGTTGATACATGAGACAA+AGG | - | chr1_1:57745544-57745563 | None:intergenic | 30.0% |
| AATTCCATGTTGATGTTTAG+TGG | - | chr1_1:57745634-57745653 | None:intergenic | 30.0% | |
| CTAAACATCAACATGGAATT+TGG | + | chr1_1:57745634-57745653 | Msa0031140:CDS | 30.0% | |
| ! | GGAATTTGGTGAGAAAAAAA+TGG | + | chr1_1:57745648-57745667 | Msa0031140:CDS | 30.0% |
| TTAATCAGAACATGGAAGAA+AGG | + | chr1_1:57745686-57745705 | Msa0031140:CDS | 30.0% | |
| TAATCCAATCTGATGAACAT+TGG | + | chr1_1:57745731-57745750 | Msa0031140:CDS | 30.0% | |
| ACAGAACACATAACAATAAG+AGG | + | chr1_1:57745754-57745773 | Msa0031140:CDS | 30.0% | |
| TTGTTTGTGAGTATGATGAT+TGG | + | chr1_1:57745778-57745797 | Msa0031140:CDS | 30.0% | |
| ! | CTTTTGTGTTTGTAAGAAGT+TGG | + | chr1_1:57745884-57745903 | Msa0031140:CDS | 30.0% |
| AGGAAGACATATATATTGTC+TGG | + | chr1_1:57746346-57746365 | Msa0031140:CDS | 30.0% | |
| ! | ACATATATATTGTCTGGAGT+AGG | + | chr1_1:57746352-57746371 | Msa0031140:CDS | 30.0% |
| ! | CATATATATTGTCTGGAGTA+GGG | + | chr1_1:57746353-57746372 | Msa0031140:CDS | 30.0% |
| CAACAAAGCAAACAACAAAA+AGG | - | chr1_1:57746438-57746457 | None:intergenic | 30.0% | |
| !!! | CTTTTTGTTGTTTGCTTTGT+TGG | + | chr1_1:57746436-57746455 | Msa0031140:CDS | 30.0% |
| GAAGAGATGTTTATAGTACT+TGG | - | chr1_1:57746729-57746748 | None:intergenic | 30.0% | |
| ! | TTTTCGATCAGTTTCTTATG+GGG | + | chr1_1:57746868-57746887 | Msa0031140:CDS | 30.0% |
| ! | TTCTTTAAGTGGTTTTTCTC+AGG | + | chr1_1:57746892-57746911 | Msa0031140:CDS | 30.0% |
| CTTAGAAGAAACTAACATGA+AGG | + | chr1_1:57747225-57747244 | Msa0031140:CDS | 30.0% | |
| ACTAACATGAAGGGTTTATA+TGG | + | chr1_1:57747235-57747254 | Msa0031140:CDS | 30.0% | |
| GAAGGGTTTATATGGTTATA+AGG | + | chr1_1:57747243-57747262 | Msa0031140:CDS | 30.0% | |
| AAGAGCAAGAACCATAAAAA+GGG | + | chr1_1:57747358-57747377 | Msa0031140:CDS | 30.0% | |
| ! | TACGTTCTTTACCCTTTTTA+TGG | - | chr1_1:57747372-57747391 | None:intergenic | 30.0% |
| ! | AGAATGTTTGAGCTTGTTTA+AGG | - | chr1_1:57747530-57747549 | None:intergenic | 30.0% |
| TAAACATGGCATATAACTAC+GGG | + | chr1_1:57747727-57747746 | Msa0031140:CDS | 30.0% | |
| ! | TTCTACAAAGCATTTGATGT+GGG | + | chr1_1:57747975-57747994 | Msa0031140:CDS | 30.0% |
| TCTGTAAATTAGTGCATAAG+GGG | - | chr1_1:57748024-57748043 | None:intergenic | 30.0% | |
| TGCACTAATTTACAGAAACA+TGG | + | chr1_1:57748028-57748047 | Msa0031140:CDS | 30.0% | |
| !!! | ATTGCTTGCAACTTTGTTTT+GGG | + | chr1_1:57748090-57748109 | Msa0031140:CDS | 30.0% |
| ! | GATTTTTCACCCAAAAAGAT+TGG | + | chr1_1:57748149-57748168 | Msa0031140:CDS | 30.0% |
| ! | ATCCATTTCCCAATCTTTTT+GGG | - | chr1_1:57748161-57748180 | None:intergenic | 30.0% |
| GTAACAAATTTCATGCAGAT+AGG | - | chr1_1:57748395-57748414 | None:intergenic | 30.0% | |
| AATGTTCGACATTGCTTTAT+GGG | - | chr1_1:57748437-57748456 | None:intergenic | 30.0% | |
| TAATGTTCGACATTGCTTTA+TGG | - | chr1_1:57748438-57748457 | None:intergenic | 30.0% | |
| AGAATTCTGACAAATAACAC+AGG | + | chr1_1:57748586-57748605 | Msa0031140:three_prime_UTR | 30.0% | |
| !!! | TTTTCTGTTAGTTTTGTTGG+GGG | - | chr1_1:57748650-57748669 | None:intergenic | 30.0% |
| !!! | GGTTTTTCTGTTAGTTTTGT+TGG | - | chr1_1:57748653-57748672 | None:intergenic | 30.0% |
| !! | TTGATGTTTAGTGGACTTGA+TGG | - | chr1_1:57745625-57745644 | None:intergenic | 35.0% |
| AAGTCCACTAAACATCAACA+TGG | + | chr1_1:57745627-57745646 | Msa0031140:CDS | 35.0% | |
| ATTACTTCAGCTCCTATAAC+TGG | - | chr1_1:57745715-57745734 | None:intergenic | 35.0% | |
| ATGAAGTTGAACCTTACAAC+AGG | + | chr1_1:57745823-57745842 | Msa0031140:CDS | 35.0% | |
| ! | ACTAAAGTGCTTGAAAAAGC+TGG | + | chr1_1:57745907-57745926 | Msa0031140:CDS | 35.0% |
| AACAGCACAAGTCTGAATAA+TGG | - | chr1_1:57745968-57745987 | None:intergenic | 35.0% | |
| TTCCGTTTCGTTAGAAATCA+AGG | + | chr1_1:57746067-57746086 | Msa0031140:intron | 35.0% | |
| GTCCTTGATTTCTAACGAAA+CGG | - | chr1_1:57746072-57746091 | None:intergenic | 35.0% | |
| TTCGTTAGAAATCAAGGACA+CGG | + | chr1_1:57746073-57746092 | Msa0031140:intron | 35.0% | |
| TAATCCAGAGTTCAGTTAGA+AGG | - | chr1_1:57746271-57746290 | None:intergenic | 35.0% | |
| TTAAAGAACCTGCATTTGGT+TGG | + | chr1_1:57746401-57746420 | Msa0031140:CDS | 35.0% | |
| TGTCTTAATTCCACTCAGAA+AGG | + | chr1_1:57746465-57746484 | Msa0031140:CDS | 35.0% | |
| ATACTACAAACCTTTCTGAG+TGG | - | chr1_1:57746478-57746497 | None:intergenic | 35.0% | |
| CACTTGGATAAGGTAAATTG+AGG | - | chr1_1:57746652-57746671 | None:intergenic | 35.0% | |
| CTCAATTTACCTTATCCAAG+TGG | + | chr1_1:57746650-57746669 | Msa0031140:CDS | 35.0% | |
| TCACACACAGGATGATAAAA+TGG | + | chr1_1:57746703-57746722 | Msa0031140:CDS | 35.0% | |
| TCTTATGGGGTTTCTTTAAG+TGG | + | chr1_1:57746881-57746900 | Msa0031140:CDS | 35.0% | |
| TTTGAACAGTTTCCAACCTT+TGG | + | chr1_1:57746931-57746950 | Msa0031140:CDS | 35.0% | |
| !! | GATTTTAGCACGACTTTTGT+GGG | + | chr1_1:57747085-57747104 | Msa0031140:CDS | 35.0% |
| CTATCAATTGCTCTAATCCT+TGG | + | chr1_1:57747271-57747290 | Msa0031140:CDS | 35.0% | |
| GACAGTTGAAACTAGAATCT+TGG | - | chr1_1:57747317-57747336 | None:intergenic | 35.0% | |
| !! | ATTCTAGTTTCAACTGTCCT+TGG | + | chr1_1:57747319-57747338 | Msa0031140:CDS | 35.0% |
| CAAGAGCAAGAACCATAAAA+AGG | + | chr1_1:57747357-57747376 | Msa0031140:CDS | 35.0% | |
| ATCATCAGCAGCTAATTCTA+AGG | - | chr1_1:57747484-57747503 | None:intergenic | 35.0% | |
| ACAAGCTCAAACATTCTTGA+AGG | + | chr1_1:57747533-57747552 | Msa0031140:CDS | 35.0% | |
| AGGTCTCACTGATATAAACA+TGG | + | chr1_1:57747713-57747732 | Msa0031140:CDS | 35.0% | |
| !!! | GAAAGTTGCACTATTTTTGC+TGG | + | chr1_1:57747749-57747768 | Msa0031140:CDS | 35.0% |
| ACTGTGACAGGAAAAGAAAA+TGG | + | chr1_1:57747774-57747793 | Msa0031140:CDS | 35.0% | |
| AGGAAAAGAAAATGGTGTAG+TGG | + | chr1_1:57747782-57747801 | Msa0031140:CDS | 35.0% | |
| TCTCATTAAATCCGTGATCT+CGG | + | chr1_1:57747824-57747843 | Msa0031140:CDS | 35.0% | |
| CATCAAATGCTTTGTAGAAC+AGG | - | chr1_1:57747974-57747993 | None:intergenic | 35.0% | |
| ! | GTTCTACAAAGCATTTGATG+TGG | + | chr1_1:57747974-57747993 | Msa0031140:CDS | 35.0% |
| TACAGAAACATGGCAGTTAT+AGG | + | chr1_1:57748038-57748057 | Msa0031140:CDS | 35.0% | |
| ACAGAAACATGGCAGTTATA+GGG | + | chr1_1:57748039-57748058 | Msa0031140:CDS | 35.0% | |
| !! | CATTGCTTGCAACTTTGTTT+TGG | + | chr1_1:57748089-57748108 | Msa0031140:CDS | 35.0% |
| !!! | CAACTTTGTTTTGGGTTCTT+TGG | + | chr1_1:57748098-57748117 | Msa0031140:CDS | 35.0% |
| ! | CATCCATTTCCCAATCTTTT+TGG | - | chr1_1:57748162-57748181 | None:intergenic | 35.0% |
| ACAAATTTCATGCAGATAGG+CGG | - | chr1_1:57748392-57748411 | None:intergenic | 35.0% | |
| TGACAAATAACACAGGTTTC+TGG | + | chr1_1:57748593-57748612 | Msa0031140:three_prime_UTR | 35.0% | |
| !!! | TTTCTGTTAGTTTTGTTGGG+GGG | - | chr1_1:57748649-57748668 | None:intergenic | 35.0% |
| AAGATGCTTTCTTCCAGCAA+AGG | - | chr1_1:57745403-57745422 | None:intergenic | 40.0% | |
| GAAGAAAGGTTGCCAGTTAT+AGG | + | chr1_1:57745700-57745719 | Msa0031140:CDS | 40.0% | |
| CTGTCCAATGTTCATCAGAT+TGG | - | chr1_1:57745738-57745757 | None:intergenic | 40.0% | |
| GTTGAACCTTACAACAGGAA+TGG | + | chr1_1:57745828-57745847 | Msa0031140:CDS | 40.0% | |
| TTGGAACCATTCCTGTTGTA+AGG | - | chr1_1:57745837-57745856 | None:intergenic | 40.0% | |
| GCAGCAGAGACATTCAAATT+TGG | - | chr1_1:57745856-57745875 | None:intergenic | 40.0% | |
| ! | GTATTTTCTTGGCGAGTGAA+TGG | - | chr1_1:57745946-57745965 | None:intergenic | 40.0% |
| ! | TGCTATAGCATTGCTGTTAG+TGG | + | chr1_1:57745991-57746010 | Msa0031140:CDS | 40.0% |
| TCGTTAACGAGATTCAGCTA+TGG | + | chr1_1:57746175-57746194 | Msa0031140:intron | 40.0% | |
| CTTACCTTCTAACTGAACTC+TGG | + | chr1_1:57746264-57746283 | Msa0031140:intron | 40.0% | |
| TTTGTGCTTGTGTGTATTGC+AGG | + | chr1_1:57746292-57746311 | Msa0031140:intron | 40.0% | |
| ! | AGGATTTGCTTCTTACCTGT+TGG | + | chr1_1:57746315-57746334 | Msa0031140:CDS | 40.0% |
| ! | GGATTTGCTTCTTACCTGTT+GGG | + | chr1_1:57746316-57746335 | Msa0031140:CDS | 40.0% |
| CTTACCTGTTGGGATTAAAC+AGG | + | chr1_1:57746326-57746345 | Msa0031140:CDS | 40.0% | |
| TCTTCCTGTTTAATCCCAAC+AGG | - | chr1_1:57746333-57746352 | None:intergenic | 40.0% | |
| GCAGTTAAAGAACCTGCATT+TGG | + | chr1_1:57746397-57746416 | Msa0031140:CDS | 40.0% | |
| ! | GTTGCACATTTTTCTGATGC+AGG | + | chr1_1:57746613-57746632 | Msa0031140:intron | 40.0% |
| GTTGCAAAACCACTTGGATA+AGG | - | chr1_1:57746662-57746681 | None:intergenic | 40.0% | |
| ! | CATCAATGGTTTTCACACAC+AGG | + | chr1_1:57746691-57746710 | Msa0031140:CDS | 40.0% |
| !! | CGATTTTAGCACGACTTTTG+TGG | + | chr1_1:57747084-57747103 | Msa0031140:CDS | 40.0% |
| ATTGCTCTAATCCTTGGTGA+TGG | + | chr1_1:57747277-57747296 | Msa0031140:CDS | 40.0% | |
| AAGTATATACGCCATCACCA+AGG | - | chr1_1:57747291-57747310 | None:intergenic | 40.0% | |
| TGATTCTTTCATGTACGCCA+AGG | - | chr1_1:57747339-57747358 | None:intergenic | 40.0% | |
| ! | GCTTGTTTAAGGTCACCATT+TGG | - | chr1_1:57747519-57747538 | None:intergenic | 40.0% |
| ACATAGTACCATTTCAGCTG+AGG | - | chr1_1:57747639-57747658 | None:intergenic | 40.0% | |
| ATGTTCGTATGCCAAGTAGT+TGG | + | chr1_1:57747909-57747928 | Msa0031140:CDS | 40.0% | |
| CAGAAACATGGCAGTTATAG+GGG | + | chr1_1:57748040-57748059 | Msa0031140:CDS | 40.0% | |
| !!! | GGGTTCTTTGGTTTTGCAAT+AGG | + | chr1_1:57748110-57748129 | Msa0031140:CDS | 40.0% |
| CACCCAAAAAGATTGGGAAA+TGG | + | chr1_1:57748156-57748175 | Msa0031140:CDS | 40.0% | |
| GAAATGGATGCCATTACCAA+TGG | + | chr1_1:57748172-57748191 | Msa0031140:CDS | 40.0% | |
| CTTTGCAATCGATATGTGCA+CGG | + | chr1_1:57748226-57748245 | Msa0031140:CDS | 40.0% | |
| TTTGCAATCGATATGTGCAC+GGG | + | chr1_1:57748227-57748246 | Msa0031140:CDS | 40.0% | |
| AACCATCAACTCTGCTTTCT+TGG | - | chr1_1:57748288-57748307 | None:intergenic | 40.0% | |
| !!! | GCAGATAGGCGGATTAATTT+TGG | - | chr1_1:57748381-57748400 | None:intergenic | 40.0% |
| TCGACATTGCTTTATGGGTT+GGG | - | chr1_1:57748432-57748451 | None:intergenic | 40.0% | |
| TTCGACATTGCTTTATGGGT+TGG | - | chr1_1:57748433-57748452 | None:intergenic | 40.0% | |
| AGCAATGTCGAACATTAGCT+AGG | + | chr1_1:57748441-57748460 | Msa0031140:three_prime_UTR | 40.0% | |
| GCAATGTCGAACATTAGCTA+GGG | + | chr1_1:57748442-57748461 | Msa0031140:three_prime_UTR | 40.0% | |
| CAGGTTCTTTAACTGCGCTT+GGG | - | chr1_1:57746393-57746412 | None:intergenic | 45.0% | |
| !! | TCCAAGTGGTTTTGCAACAG+CGG | + | chr1_1:57746664-57746683 | Msa0031140:CDS | 45.0% |
| TATTGCAGGAAGCAAGTGCA+TGG | + | chr1_1:57746832-57746851 | Msa0031140:intron | 45.0% | |
| ATTGCAGGAAGCAAGTGCAT+GGG | + | chr1_1:57746833-57746852 | Msa0031140:intron | 45.0% | |
| TTCTCAGGCAAAGAAGACTG+TGG | + | chr1_1:57746907-57746926 | Msa0031140:CDS | 45.0% | |
| CAAGCTTGCAATCCAAAGGT+TGG | - | chr1_1:57746946-57746965 | None:intergenic | 45.0% | |
| CAACCTTTGGATTGCAAGCT+TGG | + | chr1_1:57746944-57746963 | Msa0031140:CDS | 45.0% | |
| CTTCCAAGCTTGCAATCCAA+AGG | - | chr1_1:57746950-57746969 | None:intergenic | 45.0% | |
| CAGAGACAAGTTCACAAGGT+GGG | - | chr1_1:57747128-57747147 | None:intergenic | 45.0% | |
| TTATGTATCCGCTCGTCGAT+CGG | + | chr1_1:57747176-57747195 | Msa0031140:CDS | 45.0% | |
| TTAGCTGCTGATGATCTGCA+CGG | + | chr1_1:57747489-57747508 | Msa0031140:CDS | 45.0% | |
| !! | TGAAGGAGAGCATTCCAATG+TGG | + | chr1_1:57747550-57747569 | Msa0031140:CDS | 45.0% |
| !! | GAGAGCATTCCAATGTGGAT+CGG | + | chr1_1:57747555-57747574 | Msa0031140:CDS | 45.0% |
| ! | AGAGCATTCCAATGTGGATC+GGG | + | chr1_1:57747556-57747575 | Msa0031140:CDS | 45.0% |
| GCATGTTTCCTCAGCTGAAA+TGG | + | chr1_1:57747628-57747647 | Msa0031140:CDS | 45.0% | |
| ! | CTTGCATTCTGCAACGCTTT+TGG | + | chr1_1:57747687-57747706 | Msa0031140:CDS | 45.0% |
| ! | TTTTTGCTGGCAACTGTGAC+AGG | + | chr1_1:57747762-57747781 | Msa0031140:CDS | 45.0% |
| ATTGCAAGACACCGAGATCA+CGG | - | chr1_1:57747838-57747857 | None:intergenic | 45.0% | |
| TAGAACAGGAAGAAGCTCAG+AGG | - | chr1_1:57747960-57747979 | None:intergenic | 45.0% | |
| TTTGATGTGGGAAACCCACA+TGG | + | chr1_1:57747987-57748006 | Msa0031140:CDS | 45.0% | |
| !! | GGGCTTTGAATTCTCCATGT+GGG | - | chr1_1:57748004-57748023 | None:intergenic | 45.0% |
| ATGGCAGTTATAGGGGTTCA+AGG | + | chr1_1:57748047-57748066 | Msa0031140:CDS | 45.0% | |
| CAAAGTTGCAAGCAATGTCG+AGG | - | chr1_1:57748086-57748105 | None:intergenic | 45.0% | |
| GATGCCATTACCAATGGTCA+TGG | + | chr1_1:57748178-57748197 | Msa0031140:CDS | 45.0% | |
| AAGTATGCCCCTACCAGAAA+AGG | - | chr1_1:57748209-57748228 | None:intergenic | 45.0% | |
| CTCCAAGAAAGCAGAGTTGA+TGG | + | chr1_1:57748283-57748302 | Msa0031140:CDS | 45.0% | |
| ATTGCCTCCGGACTAATTTG+CGG | + | chr1_1:57748314-57748333 | Msa0031140:CDS | 45.0% | |
| TGGAATACAGTTCTTGCTGC+AGG | + | chr1_1:57748613-57748632 | Msa0031140:three_prime_UTR | 45.0% | |
| !! | ATAATACTAATATTAATATA+TGG | + | chr1_1:57747428-57747447 | Msa0031140:intron | 5.0% |
| !! | TAATACTAATATTAATATAT+GGG | + | chr1_1:57747429-57747448 | Msa0031140:intron | 5.0% |
| GTGCTTGTGTGTATTGCAGG+AGG | + | chr1_1:57746295-57746314 | Msa0031140:intron | 50.0% | |
| ! | ATTGTCTGGAGTAGGGACTG+AGG | + | chr1_1:57746360-57746379 | Msa0031140:CDS | 50.0% |
| ! | TTGTCTGGAGTAGGGACTGA+GGG | + | chr1_1:57746361-57746380 | Msa0031140:CDS | 50.0% |
| GCAGGTTCTTTAACTGCGCT+TGG | - | chr1_1:57746394-57746413 | None:intergenic | 50.0% | |
| CCAGACATCCAACCAAATGC+AGG | - | chr1_1:57746412-57746431 | None:intergenic | 50.0% | |
| CCTGCATTTGGTTGGATGTC+TGG | + | chr1_1:57746409-57746428 | Msa0031140:CDS | 50.0% | |
| ACCGCTGTTGCAAAACCACT+TGG | - | chr1_1:57746668-57746687 | None:intergenic | 50.0% | |
| GCAACAGCGGTTCTCATCAA+TGG | + | chr1_1:57746677-57746696 | Msa0031140:CDS | 50.0% | |
| GCAGAGACAAGTTCACAAGG+TGG | - | chr1_1:57747129-57747148 | None:intergenic | 50.0% | |
| GGAGCAGAGACAAGTTCACA+AGG | - | chr1_1:57747132-57747151 | None:intergenic | 50.0% | |
| GTGAACTTGTCTCTGCTCCT+TGG | + | chr1_1:57747133-57747152 | Msa0031140:CDS | 50.0% | |
| ! | CATAAGAGAGCACAGCTCCA+AGG | - | chr1_1:57747153-57747172 | None:intergenic | 50.0% |
| CTTGGAGCTGTGCTCTCTTA+TGG | + | chr1_1:57747151-57747170 | Msa0031140:CDS | 50.0% | |
| TCGATCGGCGTAAAGGAAAC+TGG | + | chr1_1:57747191-57747210 | Msa0031140:CDS | 50.0% | |
| TAGCTGCTGATGATCTGCAC+GGG | + | chr1_1:57747490-57747509 | Msa0031140:CDS | 50.0% | |
| GATCTGCACGGGAATCCAAA+TGG | + | chr1_1:57747501-57747520 | Msa0031140:CDS | 50.0% | |
| GAGCATTCCAATGTGGATCG+GGG | + | chr1_1:57747557-57747576 | Msa0031140:CDS | 50.0% | |
| TGGATCGGGGTAGTTGGATA+TGG | + | chr1_1:57747570-57747589 | Msa0031140:CDS | 50.0% | |
| TTCAGCTGAGGAAACATGCG+CGG | - | chr1_1:57747627-57747646 | None:intergenic | 50.0% | |
| GCGTTGCAGAATGCAAGAGA+TGG | - | chr1_1:57747684-57747703 | None:intergenic | 50.0% | |
| !!! | TTCTGCAACGCTTTTGGAGC+AGG | + | chr1_1:57747693-57747712 | Msa0031140:CDS | 50.0% |
| CAAGTAGTTGGCACTGCGAT+GGG | + | chr1_1:57747921-57747940 | Msa0031140:CDS | 50.0% | |
| AAGTAGTTGGCACTGCGATG+GGG | + | chr1_1:57747922-57747941 | Msa0031140:CDS | 50.0% | |
| !! | GGGGCTTTGAATTCTCCATG+TGG | - | chr1_1:57748005-57748024 | None:intergenic | 50.0% |
| ACGGCCATGACCATTGGTAA+TGG | - | chr1_1:57748185-57748204 | None:intergenic | 50.0% | |
| ! | AAAGGTACGGCCATGACCAT+TGG | - | chr1_1:57748191-57748210 | None:intergenic | 50.0% |
| !! | ATGGCCGTACCTTTTCTGGT+AGG | + | chr1_1:57748197-57748216 | Msa0031140:CDS | 50.0% |
| !! | TGGCCGTACCTTTTCTGGTA+GGG | + | chr1_1:57748198-57748217 | Msa0031140:CDS | 50.0% |
| TGCCCCTACCAGAAAAGGTA+CGG | - | chr1_1:57748204-57748223 | None:intergenic | 50.0% | |
| CGATATGTGCACGGGTAGTT+TGG | + | chr1_1:57748235-57748254 | Msa0031140:CDS | 50.0% | |
| ATGGTTCCAGCAATTGCCTC+CGG | + | chr1_1:57748302-57748321 | Msa0031140:CDS | 50.0% | |
| ATTAGTCCGGAGGCAATTGC+TGG | - | chr1_1:57748311-57748330 | None:intergenic | 50.0% | |
| ! | TTGCCTCCGGACTAATTTGC+GGG | + | chr1_1:57748315-57748334 | Msa0031140:CDS | 50.0% |
| TCCTTCCCCGCAAATTAGTC+CGG | - | chr1_1:57748324-57748343 | None:intergenic | 50.0% | |
| ! | TAATTTGCGGGGAAGGACTG+TGG | + | chr1_1:57748327-57748346 | Msa0031140:CDS | 50.0% |
| GCTAGAGCAAGAATAGCAGC+AGG | - | chr1_1:57748359-57748378 | None:intergenic | 50.0% | |
| ! | TTCCAGCAAAGGCGCGGATA+CGG | - | chr1_1:57745392-57745411 | None:intergenic | 55.0% |
| GCTTTCTTCCAGCAAAGGCG+CGG | - | chr1_1:57745398-57745417 | None:intergenic | 55.0% | |
| ! | AGCACGACTTTTGTGGGAGC+AGG | + | chr1_1:57747091-57747110 | Msa0031140:CDS | 55.0% |
| CCAACTACCCCGATCCACAT+TGG | - | chr1_1:57747567-57747586 | None:intergenic | 55.0% | |
| CCAATGTGGATCGGGGTAGT+TGG | + | chr1_1:57747564-57747583 | Msa0031140:CDS | 55.0% | |
| TCAGCTGAGGAAACATGCGC+GGG | - | chr1_1:57747626-57747645 | None:intergenic | 55.0% | |
| GGTGTAGTGGCAGCACTTGT+TGG | + | chr1_1:57747795-57747814 | Msa0031140:CDS | 55.0% | |
| ! | GTGGCAGCACTTGTTGGTTG+TGG | + | chr1_1:57747801-57747820 | Msa0031140:CDS | 55.0% |
| TGGCATACGAACATCGCCCT+GGG | - | chr1_1:57747903-57747922 | None:intergenic | 55.0% | |
| TTGGCATACGAACATCGCCC+TGG | - | chr1_1:57747904-57747923 | None:intergenic | 55.0% | |
| CCATCGCAGTGCCAACTACT+TGG | - | chr1_1:57747923-57747942 | None:intergenic | 55.0% | |
| CCAAGTAGTTGGCACTGCGA+TGG | + | chr1_1:57747920-57747939 | Msa0031140:CDS | 55.0% | |
| ! | GGTCATGGCCGTACCTTTTC+TGG | + | chr1_1:57748193-57748212 | Msa0031140:CDS | 55.0% |
| !! | GGCCGTACCTTTTCTGGTAG+GGG | + | chr1_1:57748199-57748218 | Msa0031140:CDS | 55.0% |
| ! | TGCCTCCGGACTAATTTGCG+GGG | + | chr1_1:57748316-57748335 | Msa0031140:CDS | 55.0% |
| TTCCCCGCAAATTAGTCCGG+AGG | - | chr1_1:57748321-57748340 | None:intergenic | 55.0% | |
| ! | TCCGGACTAATTTGCGGGGA+AGG | + | chr1_1:57748320-57748339 | Msa0031140:CDS | 55.0% |
| ! | GCAAAGGCGCGGATACGGTA+TGG | - | chr1_1:57745387-57745406 | None:intergenic | 60.0% |
| TACCGTATCCGCGCCTTTGC+TGG | + | chr1_1:57745387-57745406 | Msa0031140:five_prime_UTR | 60.0% | |
| CCTTTACGCCGATCGACGAG+CGG | - | chr1_1:57747187-57747206 | None:intergenic | 60.0% | |
| ATTGCACACGCACCTCTCCC+AGG | + | chr1_1:57747883-57747902 | Msa0031140:CDS | 60.0% | |
| TTGCACACGCACCTCTCCCA+GGG | + | chr1_1:57747884-57747903 | Msa0031140:CDS | 60.0% | |
| TACGAACATCGCCCTGGGAG+AGG | - | chr1_1:57747898-57747917 | None:intergenic | 60.0% | |
| CCGCTCGTCGATCGGCGTAA+AGG | + | chr1_1:57747184-57747203 | Msa0031140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57745383 | 57748672 | 57745383 | ID=Msa0031140;Name=Msa0031140 |
| chr1_1 | mRNA | 57745383 | 57748672 | 57745383 | ID=Msa0031140-mRNA-1;Parent=Msa0031140;Name=Msa0031140-mRNA-1;_AED=0.07;_eAED=0.07;_QI=121|1|1|1|0.83|0.71|7|251|680 |
| chr1_1 | exon | 57745383 | 57745483 | 57745383 | ID=Msa0031140-mRNA-1:exon:17457;Parent=Msa0031140-mRNA-1 |
| chr1_1 | exon | 57745593 | 57746012 | 57745593 | ID=Msa0031140-mRNA-1:exon:17458;Parent=Msa0031140-mRNA-1 |
| chr1_1 | exon | 57746314 | 57746486 | 57746314 | ID=Msa0031140-mRNA-1:exon:17459;Parent=Msa0031140-mRNA-1 |
| chr1_1 | exon | 57746635 | 57746729 | 57746635 | ID=Msa0031140-mRNA-1:exon:17460;Parent=Msa0031140-mRNA-1 |
| chr1_1 | exon | 57746840 | 57746974 | 57746840 | ID=Msa0031140-mRNA-1:exon:17461;Parent=Msa0031140-mRNA-1 |
| chr1_1 | exon | 57747075 | 57747379 | 57747075 | ID=Msa0031140-mRNA-1:exon:17462;Parent=Msa0031140-mRNA-1 |
| chr1_1 | exon | 57747487 | 57748672 | 57747487 | ID=Msa0031140-mRNA-1:exon:17463;Parent=Msa0031140-mRNA-1 |
| chr1_1 | five_prime_UTR | 57745383 | 57745483 | 57745383 | ID=Msa0031140-mRNA-1:five_prime_utr;Parent=Msa0031140-mRNA-1 |
| chr1_1 | five_prime_UTR | 57745593 | 57745612 | 57745593 | ID=Msa0031140-mRNA-1:five_prime_utr;Parent=Msa0031140-mRNA-1 |
| chr1_1 | CDS | 57745613 | 57746012 | 57745613 | ID=Msa0031140-mRNA-1:cds;Parent=Msa0031140-mRNA-1 |
| chr1_1 | CDS | 57746314 | 57746486 | 57746314 | ID=Msa0031140-mRNA-1:cds;Parent=Msa0031140-mRNA-1 |
| chr1_1 | CDS | 57746635 | 57746729 | 57746635 | ID=Msa0031140-mRNA-1:cds;Parent=Msa0031140-mRNA-1 |
| chr1_1 | CDS | 57746840 | 57746974 | 57746840 | ID=Msa0031140-mRNA-1:cds;Parent=Msa0031140-mRNA-1 |
| chr1_1 | CDS | 57747075 | 57747379 | 57747075 | ID=Msa0031140-mRNA-1:cds;Parent=Msa0031140-mRNA-1 |
| chr1_1 | CDS | 57747487 | 57748421 | 57747487 | ID=Msa0031140-mRNA-1:cds;Parent=Msa0031140-mRNA-1 |
| chr1_1 | three_prime_UTR | 57748422 | 57748672 | 57748422 | ID=Msa0031140-mRNA-1:three_prime_utr;Parent=Msa0031140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
