Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078370 | XP_013468866.1 | 98.824 | 680 | 8 | 0 | 1 | 680 | 1 | 680 | 0.0 | 1384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078370 | sp|Q6R3L0|YSL1_ARATH | 70.765 | 667 | 190 | 2 | 16 | 680 | 10 | 673 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078370 | A0A072VND8 | 98.824 | 680 | 8 | 0 | 1 | 680 | 1 | 680 | 0.0 | 1384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031140 | Msa0078370 | 0.825346 | 4.929142e-54 | -8.615850e-47 |
| Msa0067580 | Msa0078370 | 0.834352 | 3.150042e-56 | -8.615850e-47 |
| Msa0078370 | Msa0126150 | 0.940411 | 2.442178e-100 | -8.615850e-47 |
| Msa0078370 | Msa0171080 | 0.826351 | 2.845601e-54 | -8.615850e-47 |
| Msa0078370 | Msa0227800 | 0.819565 | 1.086364e-52 | -8.615850e-47 |
| Msa0078370 | Msa0304990 | 0.800935 | 1.140991e-48 | -8.615850e-47 |
| Msa0078370 | Msa0365360 | 0.807434 | 5.064308e-50 | -8.615850e-47 |
| Msa0078370 | Msa0544930 | 0.830802 | 2.392244e-55 | -8.615850e-47 |
| Msa0078370 | Msa0641020 | 0.829855 | 4.075947e-55 | -8.615850e-47 |
| Msa0078370 | Msa0641030 | 0.832517 | 9.034898e-56 | -8.615850e-47 |
| Msa0078370 | Msa0679560 | 0.825016 | 5.897794e-54 | -8.615850e-47 |
| Msa0078370 | Msa0718470 | 0.806668 | 7.355192e-50 | -8.615850e-47 |
| Msa0078370 | Msa0739410 | 0.820877 | 5.438674e-53 | -8.615850e-47 |
| Msa0078370 | Msa0752580 | 0.801546 | 8.556385e-49 | -8.615850e-47 |
| Msa0078370 | Msa0754500 | 0.800002 | 1.768050e-48 | -8.615850e-47 |
| Msa0078370 | Msa0801100 | 0.811851 | 5.691818e-51 | -8.615850e-47 |
| Msa0078370 | Msa0839480 | 0.850602 | 1.527536e-60 | -8.615850e-47 |
| Msa0078370 | Msa1209560 | 0.811238 | 7.737136e-51 | -8.615850e-47 |
| Msa0078370 | Msa1219040 | 0.815152 | 1.070381e-51 | -8.615850e-47 |
| Msa0078370 | Msa1232330 | 0.803060 | 4.173891e-49 | -8.615850e-47 |
| Msa0078370 | Msa1246040 | 0.804296 | 2.312325e-49 | -8.615850e-47 |
| Msa0078370 | Msa1275340 | 0.808662 | 2.774700e-50 | -8.615850e-47 |
| Msa0078370 | Msa1298910 | 0.813174 | 2.924439e-51 | -8.615850e-47 |
| Msa0078370 | Msa1330530 | 0.811398 | 7.141731e-51 | -8.615850e-47 |
| Msa0078370 | Msa1375800 | 0.837355 | 5.459837e-57 | -8.615850e-47 |
| Msa0078370 | Msa1445250 | 0.832584 | 8.694912e-56 | -8.615850e-47 |
| Msa0078370 | Msa1457070 | 0.812609 | 3.888908e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078370 | MtrunA17_Chr1g0189011 | 98.824 | 680 | 8 | 0 | 1 | 680 | 1 | 680 | 0.0 | 1384 |
| Msa0078370 | MtrunA17_Chr3g0127441 | 64.812 | 665 | 231 | 2 | 17 | 680 | 4 | 666 | 0.0 | 919 |
| Msa0078370 | MtrunA17_Chr1g0146651 | 62.704 | 673 | 242 | 5 | 11 | 680 | 6 | 672 | 0.0 | 875 |
| Msa0078370 | MtrunA17_Chr3g0119981 | 62.519 | 675 | 239 | 7 | 9 | 677 | 3 | 669 | 0.0 | 869 |
| Msa0078370 | MtrunA17_Chr1g0146641 | 62.085 | 662 | 246 | 4 | 23 | 680 | 15 | 675 | 0.0 | 867 |
| Msa0078370 | MtrunA17_Chr1g0146591 | 62.236 | 662 | 245 | 4 | 23 | 680 | 15 | 675 | 0.0 | 866 |
| Msa0078370 | MtrunA17_Chr7g0224611 | 53.365 | 639 | 289 | 5 | 46 | 677 | 37 | 673 | 0.0 | 727 |
| Msa0078370 | MtrunA17_Chr6g0481821 | 51.638 | 641 | 295 | 7 | 47 | 679 | 66 | 699 | 0.0 | 712 |
| Msa0078370 | MtrunA17_Chr5g0443261 | 51.274 | 667 | 312 | 7 | 22 | 679 | 7 | 669 | 0.0 | 704 |
| Msa0078370 | MtrunA17_Chr3g0109311 | 53.052 | 639 | 291 | 5 | 47 | 679 | 48 | 683 | 0.0 | 697 |
| Msa0078370 | MtrunA17_Chr3g0109321 | 52.582 | 639 | 294 | 5 | 47 | 679 | 42 | 677 | 0.0 | 676 |
| Msa0078370 | MtrunA17_Chr1g0146601 | 63.469 | 490 | 178 | 1 | 192 | 680 | 261 | 750 | 0.0 | 672 |
| Msa0078370 | MtrunA17_Chr1g0146601 | 58.511 | 188 | 65 | 5 | 11 | 196 | 25 | 201 | 7.65e-55 | 200 |
| Msa0078370 | MtrunA17_Chr5g0443301 | 52.075 | 530 | 248 | 4 | 156 | 679 | 11 | 540 | 0.0 | 569 |
| Msa0078370 | MtrunA17_Chr5g0443291 | 50.435 | 115 | 53 | 2 | 22 | 133 | 7 | 120 | 9.81e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078370 | AT4G24120.1 | 70.765 | 667 | 190 | 2 | 16 | 680 | 10 | 673 | 0.0 | 999 |
| Msa0078370 | AT5G53550.3 | 64.468 | 667 | 231 | 4 | 16 | 680 | 9 | 671 | 0.0 | 910 |
| Msa0078370 | AT5G53550.1 | 64.468 | 667 | 231 | 4 | 16 | 680 | 9 | 671 | 0.0 | 910 |
| Msa0078370 | AT5G53550.6 | 64.468 | 667 | 231 | 4 | 16 | 680 | 9 | 671 | 0.0 | 910 |
| Msa0078370 | AT5G53550.5 | 64.468 | 667 | 231 | 4 | 16 | 680 | 9 | 671 | 0.0 | 910 |
| Msa0078370 | AT5G53550.2 | 64.468 | 667 | 231 | 4 | 16 | 680 | 9 | 671 | 0.0 | 910 |
| Msa0078370 | AT5G24380.1 | 63.664 | 666 | 230 | 4 | 20 | 680 | 5 | 663 | 0.0 | 902 |
| Msa0078370 | AT1G65730.1 | 52.647 | 680 | 297 | 9 | 19 | 679 | 1 | 674 | 0.0 | 735 |
| Msa0078370 | AT3G27020.1 | 51.194 | 670 | 312 | 6 | 20 | 677 | 4 | 670 | 0.0 | 721 |
| Msa0078370 | AT5G41000.1 | 51.791 | 670 | 315 | 4 | 18 | 680 | 2 | 670 | 0.0 | 721 |
| Msa0078370 | AT5G53550.4 | 64.775 | 511 | 177 | 2 | 171 | 680 | 1 | 509 | 0.0 | 713 |
| Msa0078370 | AT1G48370.1 | 52.207 | 657 | 293 | 7 | 40 | 680 | 59 | 710 | 0.0 | 687 |
| Msa0078370 | AT5G41000.2 | 50.526 | 665 | 306 | 4 | 18 | 680 | 2 | 645 | 0.0 | 682 |
| Msa0078370 | AT3G17650.1 | 50.533 | 657 | 305 | 7 | 39 | 680 | 49 | 700 | 0.0 | 677 |
| Msa0078370 | AT3G17650.2 | 50.533 | 657 | 305 | 7 | 39 | 680 | 49 | 700 | 0.0 | 677 |
| Msa0078370 | AT1G48370.2 | 52.319 | 539 | 243 | 5 | 156 | 680 | 9 | 547 | 0.0 | 571 |
| Msa0078370 | AT5G41000.3 | 51.515 | 495 | 232 | 4 | 193 | 680 | 1 | 494 | 0.0 | 534 |
| Msa0078370 | AT5G45450.1 | 48.077 | 208 | 101 | 2 | 474 | 680 | 1 | 202 | 6.87e-65 | 214 |
Find 164 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCATGGCCGTACCGTTTC+TGG | 0.148320 | 1_2:-55810470 | Msa0078370:CDS |
| CTCGCATTCTGCAATGCTTT+TGG | 0.175738 | 1_2:-55810976 | Msa0078370:CDS |
| CATTGCTTGCAACTTTGTTT+TGG | 0.185014 | 1_2:-55810574 | Msa0078370:CDS |
| AGAATGTTTGAGCTTGTTTA+AGG | 0.190142 | 1_2:+55811136 | None:intergenic |
| ATGGTTCCAGCAATTGCTTC+TGG | 0.222492 | 1_2:-55810361 | Msa0078370:CDS |
| AACCATCAACTCTGCTTTCT+TGG | 0.226520 | 1_2:+55810378 | None:intergenic |
| CTTGGAGCTGTGCTCTCTTA+TGG | 0.235520 | 1_2:-55811518 | Msa0078370:CDS |
| CAAGAGCAAGAACCATAAAA+AGG | 0.240574 | 1_2:-55811312 | Msa0078370:CDS |
| CTAAACATCAACATGGAATT+TGG | 0.250698 | 1_2:-55813293 | Msa0078370:CDS |
| GCAGCAGAGACATTCAAATT+TGG | 0.267639 | 1_2:+55813074 | None:intergenic |
| TTGATCGGCGTAAAGGAAAT+TGG | 0.270852 | 1_2:-55811478 | Msa0078370:CDS |
| GAAGGGTTTATATGGTTATA+AGG | 0.272710 | 1_2:-55811426 | Msa0078370:CDS |
| CCTGCATTTGGTTGGATGTC+TGG | 0.275545 | 1_2:-55812458 | Msa0078370:CDS |
| TACCGTATCCGCGCCTTTGC+TGG | 0.281051 | 1_2:-55813540 | Msa0078370:five_prime_UTR |
| AATTCCATGTTGATGTTTAG+TGG | 0.299995 | 1_2:+55813296 | None:intergenic |
| ACTAACATGAAGGGTTTATA+TGG | 0.306840 | 1_2:-55811434 | Msa0078370:CDS |
| ACAGAAACATGGCAGTTATA+GGG | 0.308924 | 1_2:-55810624 | Msa0078370:CDS |
| TCACACACAGGATGATAAAA+TGG | 0.314433 | 1_2:-55811960 | Msa0078370:CDS |
| TTTGAACAGTTTCCAACCTT+TGG | 0.315680 | 1_2:-55811738 | Msa0078370:CDS |
| CTGTCCAATGTTCATCAGAT+TGG | 0.320759 | 1_2:+55813192 | None:intergenic |
| ATTATTTCAGCTCCTATAAC+TGG | 0.321331 | 1_2:+55813215 | None:intergenic |
| TACAGAAACATGGCAGTTAT+AGG | 0.321915 | 1_2:-55810625 | Msa0078370:CDS |
| CAACAAAGCAAACAACAAAA+AGG | 0.327369 | 1_2:+55812432 | None:intergenic |
| CTCCAAGAAAGCAGAGTTGA+TGG | 0.329189 | 1_2:-55810380 | Msa0078370:CDS |
| CAACCTTTGGATTGCAAGCT+TGG | 0.329374 | 1_2:-55811725 | Msa0078370:CDS |
| ATTATATGCCATGTTTATAT+CGG | 0.361843 | 1_2:+55810942 | None:intergenic |
| GTATTAATGCCAACAGTATA+TGG | 0.369274 | 1_2:+55810110 | None:intergenic |
| ATAAACATGGCATATAATTA+CGG | 0.369510 | 1_2:-55810937 | Msa0078370:CDS |
| GAGGAAAGGTTGCCAGTTAT+AGG | 0.369530 | 1_2:-55813227 | Msa0078370:CDS |
| TTTCTGTAAATTAGCGCATA+AGG | 0.374435 | 1_2:+55810640 | None:intergenic |
| GGTGTAGTGGCAGCACTTGT+TGG | 0.376653 | 1_2:-55810868 | Msa0078370:CDS |
| TGGATCGGGGTGGTTGGATA+TGG | 0.377446 | 1_2:-55811093 | Msa0078370:CDS |
| TTGGAACCATTCCTGTTGTA+AGG | 0.381075 | 1_2:+55813093 | None:intergenic |
| CATCAAATGCCTTGTAGAAC+AGG | 0.386991 | 1_2:+55810692 | None:intergenic |
| TTGCTTCTGGACTAATTTGC+GGG | 0.390184 | 1_2:-55810348 | Msa0078370:CDS |
| GTGAACTTGTCTCTGCTCCT+TGG | 0.393687 | 1_2:-55811536 | Msa0078370:CDS |
| TTCTACATTGCTTTATGTGT+TGG | 0.396022 | 1_2:+55810233 | None:intergenic |
| CTATCAATTGCTCTAATCCT+TGG | 0.398456 | 1_2:-55811398 | Msa0078370:CDS |
| CATATCTGTTGGGATTAAAC+AGG | 0.406006 | 1_2:-55812541 | Msa0078370:CDS |
| TCTACATTGCTTTATGTGTT+GGG | 0.406683 | 1_2:+55810234 | None:intergenic |
| TCTTATGGGGTTTCTTTAAG+TGG | 0.406690 | 1_2:-55811788 | Msa0078370:CDS |
| TGATATGTGCACGGGTAGTT+TGG | 0.409592 | 1_2:-55810428 | Msa0078370:CDS |
| AGAGCATTCCAATGTGGATC+GGG | 0.410494 | 1_2:-55811107 | Msa0078370:CDS |
| GCAACAGCGGTTCTCATCAA+TGG | 0.410553 | 1_2:-55811986 | Msa0078370:CDS |
| TGCTATAGCATTGCTGTTAG+CGG | 0.415612 | 1_2:-55812936 | Msa0078370:intron |
| ACAAGCTCAAACATTCTTGA+AGG | 0.418237 | 1_2:-55811130 | Msa0078370:CDS |
| TAAACATGGCATATAATTAC+GGG | 0.419343 | 1_2:-55810936 | Msa0078370:CDS |
| TTGATGTTTAGTGGACTTGA+TGG | 0.419351 | 1_2:+55813305 | None:intergenic |
| ACATGTTTCCTCAGCTGAAA+TGG | 0.420348 | 1_2:-55811035 | Msa0078370:CDS |
| GCAGTTAAAGAACCTGCATT+TGG | 0.420611 | 1_2:-55812470 | Msa0078370:CDS |
| TTCTGTAAATTAGCGCATAA+GGG | 0.423993 | 1_2:+55810641 | None:intergenic |
| CAGGTTCTTTAACTGCGCTT+GGG | 0.424884 | 1_2:+55812477 | None:intergenic |
| GCAGGTTCTTTAACTGCGCT+TGG | 0.426747 | 1_2:+55812476 | None:intergenic |
| AACAGCACAAGTCTGAATAA+TGG | 0.434716 | 1_2:+55812962 | None:intergenic |
| GACAGTTGAAACTAGAATCT+TGG | 0.437254 | 1_2:+55811355 | None:intergenic |
| GCTTGTTTAAGGTCACCATT+TGG | 0.442681 | 1_2:+55811147 | None:intergenic |
| ATGGCAGTTATAGGGGTTCA+AGG | 0.442747 | 1_2:-55810616 | Msa0078370:CDS |
| CAAGTAGTTGGCACTGCAAT+GGG | 0.442885 | 1_2:-55810742 | Msa0078370:CDS |
| TTCCAGCAAAGGCGCGGATA+CGG | 0.448707 | 1_2:+55813538 | None:intergenic |
| AGGATTTGCTTCATATCTGT+TGG | 0.450626 | 1_2:-55812552 | Msa0078370:CDS |
| GGCCGTACCGTTTCTGGTAG+GGG | 0.452239 | 1_2:-55810464 | Msa0078370:CDS |
| AGGAAGACATATGTGTTGTC+TGG | 0.456289 | 1_2:-55812521 | Msa0078370:CDS |
| ACAGAACACATAACAATAAG+AGG | 0.457854 | 1_2:-55813173 | Msa0078370:CDS |
| GGATTTGCTTCATATCTGTT+GGG | 0.460752 | 1_2:-55812551 | Msa0078370:CDS |
| ATTCTAGTTTCAACTGTCCT+TGG | 0.462241 | 1_2:-55811350 | Msa0078370:CDS |
| ATTGCACACGCACCTCTCCC+AGG | 0.462537 | 1_2:-55810780 | Msa0078370:CDS |
| CCGCTTGTTGATCGGCGTAA+AGG | 0.468950 | 1_2:-55811485 | Msa0078370:CDS |
| CCATTGCAGTGCCAACTACT+TGG | 0.469410 | 1_2:+55810743 | None:intergenic |
| TATTTCAGGAAGCAAGTACA+TGG | 0.472341 | 1_2:-55811837 | Msa0078370:intron |
| TGGAATACAGTTCTTGCTGC+AGG | 0.472709 | 1_2:-55810042 | Msa0078370:three_prime_UTR |
| TTATGTATCCGCTTGTTGAT+CGG | 0.475175 | 1_2:-55811493 | Msa0078370:CDS |
| GTTGCAAAACCACTTGGATA+AGG | 0.475631 | 1_2:+55812004 | None:intergenic |
| TTGGCATACGAACATCGCCC+TGG | 0.477283 | 1_2:+55810762 | None:intergenic |
| ATTAGTCCAGAAGCAATTGC+TGG | 0.479004 | 1_2:+55810355 | None:intergenic |
| GTGTAGTGGCAGCACTTGTT+GGG | 0.479516 | 1_2:-55810867 | Msa0078370:CDS |
| TGTCTTAATTCCACTCAGAA+AGG | 0.483712 | 1_2:-55812402 | Msa0078370:intron |
| ATTGCTTCTGGACTAATTTG+CGG | 0.484236 | 1_2:-55810349 | Msa0078370:CDS |
| TGGCCGTACCGTTTCTGGTA+GGG | 0.487172 | 1_2:-55810465 | Msa0078370:CDS |
| CAAGCTTGCAATCCAAAGGT+TGG | 0.490018 | 1_2:+55811726 | None:intergenic |
| ATGGCCGTACCGTTTCTGGT+AGG | 0.493169 | 1_2:-55810466 | Msa0078370:CDS |
| TCTGGACTAATTTGCGGGGA+AGG | 0.499946 | 1_2:-55810343 | Msa0078370:CDS |
| GAGCTTCTTCCTGTTCTACA+AGG | 0.503256 | 1_2:-55810701 | Msa0078370:CDS |
| CAGAAACATGGCAGTTATAG+GGG | 0.504777 | 1_2:-55810623 | Msa0078370:CDS |
| TACGAACATCGCCCTGGGAG+AGG | 0.508872 | 1_2:+55810768 | None:intergenic |
| TTGTTTGTGAGTATGATGAT+TGG | 0.510508 | 1_2:-55813149 | Msa0078370:CDS |
| GAGAAAGAACAAATAAACTA+AGG | 0.515796 | 1_2:-55813465 | Msa0078370:intron |
| ATGAAGCTGAACCTTACAAC+AGG | 0.516868 | 1_2:-55813104 | Msa0078370:CDS |
| CCAAGTAGTTGGCACTGCAA+TGG | 0.516937 | 1_2:-55810743 | Msa0078370:CDS |
| CTTCCAAGCTTGCAATCCAA+AGG | 0.518270 | 1_2:+55811722 | None:intergenic |
| GCAAAGGCGCGGATACGGTA+TGG | 0.521818 | 1_2:+55813543 | None:intergenic |
| TTAAAGAACCTGCATTTGGT+TGG | 0.523266 | 1_2:-55812466 | Msa0078370:CDS |
| ACGGCCATGACCATCGGTAA+TGG | 0.525061 | 1_2:+55810481 | None:intergenic |
| CTTAGAAGAAACTAACATGA+AGG | 0.531827 | 1_2:-55811444 | Msa0078370:CDS |
| AAGTATGCCCCTACCAGAAA+CGG | 0.532502 | 1_2:+55810457 | None:intergenic |
| ACCGCTGTTGCAAAACCACT+TGG | 0.532997 | 1_2:+55811998 | None:intergenic |
| TAATCCAATCTGATGAACAT+TGG | 0.534849 | 1_2:-55813196 | Msa0078370:CDS |
| TCTCATTAAATCCGTGATCT+CGG | 0.542009 | 1_2:-55810839 | Msa0078370:CDS |
| AACGGTACGGCCATGACCAT+CGG | 0.544921 | 1_2:+55810475 | None:intergenic |
| CTTTGCAATTGATATGTGCA+CGG | 0.550723 | 1_2:-55810437 | Msa0078370:CDS |
| GCATTGCAGAATGCGAGAGA+TGG | 0.551488 | 1_2:+55810982 | None:intergenic |
| CCAATGTGGATCGGGGTGGT+TGG | 0.555058 | 1_2:-55811099 | Msa0078370:CDS |
| AAGATGCTTTCTTCCAGCAA+AGG | 0.555540 | 1_2:+55813527 | None:intergenic |
| CCAACCACCCCGATCCACAT+TGG | 0.558976 | 1_2:+55811099 | None:intergenic |
| TTCTACAAGGCATTTGATGT+GGG | 0.559939 | 1_2:-55810688 | Msa0078370:CDS |
| GTGGCAGCACTTGTTGGGTG+TGG | 0.560583 | 1_2:-55810862 | Msa0078370:CDS |
| GTAACAAATTTCATGCAGAT+AGG | 0.560658 | 1_2:+55810271 | None:intergenic |
| CCAGACATCCAACCAAATGC+AGG | 0.560714 | 1_2:+55812458 | None:intergenic |
| GTTCTACAAGGCATTTGATG+TGG | 0.561788 | 1_2:-55810689 | Msa0078370:CDS |
| GAGAGCATTCCAATGTGGAT+CGG | 0.564131 | 1_2:-55811108 | Msa0078370:CDS |
| TTTGCAATTGATATGTGCAC+GGG | 0.567782 | 1_2:-55810436 | Msa0078370:CDS |
| CTCAATTTACCTTATCCAAG+TGG | 0.567851 | 1_2:-55812013 | Msa0078370:CDS |
| TCAGCTGAGGAAACATGTGC+GGG | 0.575967 | 1_2:+55811040 | None:intergenic |
| TTAGAAGAAACTAACATGAA+GGG | 0.576320 | 1_2:-55811443 | Msa0078370:CDS |
| GATGCCATTACCGATGGTCA+TGG | 0.577978 | 1_2:-55810485 | Msa0078370:CDS |
| CACTTGGATAAGGTAAATTG+AGG | 0.578530 | 1_2:+55812014 | None:intergenic |
| CAGAGACAAGTTCACAAGGT+GGG | 0.586027 | 1_2:+55811544 | None:intergenic |
| TCTGTAAATTAGCGCATAAG+GGG | 0.587143 | 1_2:+55810642 | None:intergenic |
| TGATTCTTTCATGTACGCCA+AGG | 0.587279 | 1_2:+55811333 | None:intergenic |
| GCTAGAGCAAGAATAGCAGC+AGG | 0.590008 | 1_2:+55810307 | None:intergenic |
| TGGCATACGAACATCGCCCT+GGG | 0.590951 | 1_2:+55810763 | None:intergenic |
| TTGCACACGCACCTCTCCCA+GGG | 0.591980 | 1_2:-55810779 | Msa0078370:CDS |
| TTAATCAGAACATGGAGGAA+AGG | 0.596522 | 1_2:-55813241 | Msa0078370:CDS |
| ATTGCAAGACACCGAGATCA+CGG | 0.597470 | 1_2:+55810828 | None:intergenic |
| CCTTTACGCCGATCAACAAG+CGG | 0.598669 | 1_2:+55811485 | None:intergenic |
| TTAGCTGCTGATGATATGCA+CGG | 0.598888 | 1_2:-55811174 | Msa0078370:CDS |
| TTGTCTGGAGTAGGCACTGA+GGG | 0.599934 | 1_2:-55812506 | Msa0078370:CDS |
| GATATGCACGGGAATCCAAA+TGG | 0.600924 | 1_2:-55811162 | Msa0078370:CDS |
| CATAAGAGAGCACAGCTCCA+AGG | 0.601707 | 1_2:+55811519 | None:intergenic |
| ACAAATTTCATGCAGATAGG+CGG | 0.603089 | 1_2:+55810274 | None:intergenic |
| ACATATGTGTTGTCTGGAGT+AGG | 0.606766 | 1_2:-55812515 | Msa0078370:CDS |
| TGCGCTAATTTACAGAAACA+TGG | 0.611107 | 1_2:-55810635 | Msa0078370:CDS |
| ATTGCTCTAATCCTTGGTGA+TGG | 0.613675 | 1_2:-55811392 | Msa0078370:CDS |
| ACTGTGACAGGAAAAGAGAA+TGG | 0.615219 | 1_2:-55810889 | Msa0078370:CDS |
| GCTTTCTTCCAGCAAAGGCG+CGG | 0.616342 | 1_2:+55813532 | None:intergenic |
| TGCCCCTACCAGAAACGGTA+CGG | 0.622037 | 1_2:+55810462 | None:intergenic |
| ATGTTCGTATGCCAAGTAGT+TGG | 0.622489 | 1_2:-55810754 | Msa0078370:CDS |
| AGGAAAAGAGAATGGTGTAG+TGG | 0.626117 | 1_2:-55810881 | Msa0078370:CDS |
| GCTGAACCTTACAACAGGAA+TGG | 0.626965 | 1_2:-55813099 | Msa0078370:CDS |
| TTCAGCTGAGGAAACATGTG+CGG | 0.627137 | 1_2:+55811039 | None:intergenic |
| AGAACATTACCATATACTGT+TGG | 0.627524 | 1_2:-55810119 | Msa0078370:three_prime_UTR |
| TAGCTGCTGATGATATGCAC+GGG | 0.628013 | 1_2:-55811173 | Msa0078370:CDS |
| GAAATGGATGCCATTACCGA+TGG | 0.631123 | 1_2:-55810491 | Msa0078370:CDS |
| TAATTTGCGGGGAAGGACTG+TGG | 0.634672 | 1_2:-55810336 | Msa0078370:CDS |
| ACATAGTACCATTTCAGCTG+AGG | 0.638500 | 1_2:+55811027 | None:intergenic |
| TTCTCAGGCAAAGAAGACTG+TGG | 0.640879 | 1_2:-55811762 | Msa0078370:CDS |
| CAAAGTTGCAAGCAATGTCG+AGG | 0.653267 | 1_2:+55810580 | None:intergenic |
| AAGAGATATTAATCAGAACA+TGG | 0.654492 | 1_2:-55813249 | Msa0078370:CDS |
| GGAGCAGAGACAAGTTCACA+AGG | 0.657179 | 1_2:+55811540 | None:intergenic |
| GAGCATTCCAATGTGGATCG+GGG | 0.663368 | 1_2:-55811106 | Msa0078370:CDS |
| AAGTCCACTAAACATCAACA+TGG | 0.666317 | 1_2:-55813300 | Msa0078370:CDS |
| ATTTCAGGAAGCAAGTACAT+GGG | 0.670330 | 1_2:-55811836 | Msa0078370:intron |
| AGGTCTCACCGATATAAACA+TGG | 0.670610 | 1_2:-55810950 | Msa0078370:CDS |
| TTTGATGTGGGAAATCCACA+TGG | 0.672631 | 1_2:-55810676 | Msa0078370:CDS |
| TGAAGGAGAGCATTCCAATG+TGG | 0.677015 | 1_2:-55811113 | Msa0078370:CDS |
| TAGAACAGGAAGAAGCTCAG+AGG | 0.678038 | 1_2:+55810706 | None:intergenic |
| TGCTTCTGGACTAATTTGCG+GGG | 0.681116 | 1_2:-55810347 | Msa0078370:CDS |
| GGACTACAAACCTTTCTGAG+TGG | 0.685333 | 1_2:+55812392 | None:intergenic |
| GGGGCTTTGAATTCTCCATG+TGG | 0.688129 | 1_2:+55810661 | None:intergenic |
| GCAGAGACAAGTTCACAAGG+TGG | 0.689164 | 1_2:+55811543 | None:intergenic |
| CATTCCAATGTGGATCGGGG+TGG | 0.693940 | 1_2:-55811103 | Msa0078370:CDS |
| AAGTATATACGCCATCACCA+AGG | 0.720711 | 1_2:+55811381 | None:intergenic |
| AGATATTAATCAGAACATGG+AGG | 0.737419 | 1_2:-55813246 | Msa0078370:CDS |
| AAGTAGTTGGCACTGCAATG+GGG | 0.753918 | 1_2:-55810741 | Msa0078370:CDS |
| GTTGTCTGGAGTAGGCACTG+AGG | 0.773435 | 1_2:-55812507 | Msa0078370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATATTATAATATAAGA+TGG | + | chr1_2:55811700-55811719 | None:intergenic | 10.0% |
| !! | ATCTTATATTATAATATTTC+AGG | - | chr1_2:55811699-55811718 | Msa0078370:intron | 10.0% |
| !!! | TTAATAAAATCTACTTCTTT+TGG | + | chr1_2:55811323-55811342 | None:intergenic | 15.0% |
| !!! | AAGTAGATTTTATTAAAAAG+TGG | - | chr1_2:55811327-55811346 | Msa0078370:CDS | 15.0% |
| !! | TCAAGCATATAATATATAAT+TGG | - | chr1_2:55811869-55811888 | Msa0078370:intron | 15.0% |
| !! | CATATAATATATAATTGGTT+TGG | - | chr1_2:55811874-55811893 | Msa0078370:intron | 15.0% |
| !! | ATGTTACTAATCTTATTATT+TGG | - | chr1_2:55811919-55811938 | Msa0078370:intron | 15.0% |
| !! | AAAAAGAAAACAAAAAAGAA+AGG | + | chr1_2:55813357-55813376 | None:intergenic | 15.0% |
| !! | GAAAATGATAAATATGTAGT+AGG | + | chr1_2:55810652-55810671 | None:intergenic | 20.0% |
| !!! | TCATTTTTTTGAGAACAAAA+TGG | - | chr1_2:55810929-55810948 | Msa0078370:CDS | 20.0% |
| !!! | ATCCAAATTTTTGTACAAAA+AGG | + | chr1_2:55811200-55811219 | None:intergenic | 20.0% |
| !! | TAACATTCTCCTTAATTAAT+TGG | + | chr1_2:55811270-55811289 | None:intergenic | 20.0% |
| !!! | TTAATTAGACACTGAATTTT+TGG | + | chr1_2:55811480-55811499 | None:intergenic | 20.0% |
| !! | GAAAAATTCAAAAGAAGAAA+GGG | + | chr1_2:55812291-55812310 | None:intergenic | 20.0% |
| !! | TGAAAAATTCAAAAGAAGAA+AGG | + | chr1_2:55812292-55812311 | None:intergenic | 20.0% |
| !! | ATTATATGCCATGTTTATAT+CGG | + | chr1_2:55812611-55812630 | None:intergenic | 20.0% |
| !! | ATAAACATGGCATATAATTA+CGG | - | chr1_2:55812613-55812632 | Msa0078370:intron | 20.0% |
| !!! | TTTTTCTTTTAGTTTTGTTG+GGG | + | chr1_2:55813545-55813564 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTTTAGTTTTGTT+GGG | + | chr1_2:55813546-55813565 | None:intergenic | 20.0% |
| ! | GAGAAAGAACAAATAAACTA+AGG | - | chr1_2:55810085-55810104 | Msa0078370:three_prime_UTR | 25.0% |
| ! | TAATATAGTAAAGTTGTGAC+AGG | - | chr1_2:55810194-55810213 | Msa0078370:three_prime_UTR | 25.0% |
| ! | AAGAGATATTAATCAGAACA+TGG | - | chr1_2:55810301-55810320 | Msa0078370:CDS | 25.0% |
| !! | TCTGAATAATGGTATTTTCT+TGG | + | chr1_2:55810580-55810599 | None:intergenic | 25.0% |
| ! | TTTGTAGTCCTATAATACTT+TGG | - | chr1_2:55811171-55811190 | Msa0078370:CDS | 25.0% |
| !! | CTCCTTTTTGTACAAAAATT+TGG | - | chr1_2:55811195-55811214 | Msa0078370:intron | 25.0% |
| !!! | CATTTAAAAGTACTGAAAGA+TGG | + | chr1_2:55811236-55811255 | None:intergenic | 25.0% |
| ! | AAAGAAGCTCCAATTAATTA+AGG | - | chr1_2:55811258-55811277 | Msa0078370:intron | 25.0% |
| !!! | AACTTTTGTTTGTTGCAATT+TGG | - | chr1_2:55811649-55811668 | Msa0078370:intron | 25.0% |
| ! | TGTTGCAATTTGGAAAATAA+AGG | - | chr1_2:55811659-55811678 | Msa0078370:intron | 25.0% |
| !!! | ATTTTTCGATCAGTTTCTTA+TGG | - | chr1_2:55811747-55811766 | Msa0078370:CDS | 25.0% |
| !!! | TTTTTCGATCAGTTTCTTAT+GGG | - | chr1_2:55811748-55811767 | Msa0078370:CDS | 25.0% |
| !! | TAGTTTCTTCTAAGTTTTCA+GGG | + | chr1_2:55812100-55812119 | None:intergenic | 25.0% |
| !! | TTAGTTTCTTCTAAGTTTTC+AGG | + | chr1_2:55812101-55812120 | None:intergenic | 25.0% |
| ! | TTAGAAGAAACTAACATGAA+GGG | - | chr1_2:55812107-55812126 | Msa0078370:intron | 25.0% |
| !! | TATGTTCTTTACCCTTTTTA+TGG | + | chr1_2:55812253-55812272 | None:intergenic | 25.0% |
| ! | TAAACATGGCATATAATTAC+GGG | - | chr1_2:55812614-55812633 | Msa0078370:intron | 25.0% |
| !! | ATTTTTCACCCAAAAAGATT+GGG | - | chr1_2:55813037-55813056 | Msa0078370:CDS | 25.0% |
| !!! | TTTTCTTTTAGTTTTGTTGG+GGG | + | chr1_2:55813544-55813563 | None:intergenic | 25.0% |
| !!! | GGTTTTTCTTTTAGTTTTGT+TGG | + | chr1_2:55813547-55813566 | None:intergenic | 25.0% |
| ! | ATAGTTGATACATGAGACAA+AGG | + | chr1_2:55810167-55810186 | None:intergenic | 30.0% |
| AATTCCATGTTGATGTTTAG+TGG | + | chr1_2:55810257-55810276 | None:intergenic | 30.0% | |
| CTAAACATCAACATGGAATT+TGG | - | chr1_2:55810257-55810276 | Msa0078370:exon | 30.0% | |
| ! | GGAATTTGGTGAGAAAAAAA+TGG | - | chr1_2:55810271-55810290 | Msa0078370:CDS | 30.0% |
| AGATATTAATCAGAACATGG+AGG | - | chr1_2:55810304-55810323 | Msa0078370:CDS | 30.0% | |
| ATTATTTCAGCTCCTATAAC+TGG | + | chr1_2:55810338-55810357 | None:intergenic | 30.0% | |
| TAATCCAATCTGATGAACAT+TGG | - | chr1_2:55810354-55810373 | Msa0078370:CDS | 30.0% | |
| ACAGAACACATAACAATAAG+AGG | - | chr1_2:55810377-55810396 | Msa0078370:CDS | 30.0% | |
| TTGTTTGTGAGTATGATGAT+TGG | - | chr1_2:55810401-55810420 | Msa0078370:CDS | 30.0% | |
| ! | CTTTTGTGTTTGTAAGAAGT+TGG | - | chr1_2:55810507-55810526 | Msa0078370:CDS | 30.0% |
| AATCAGATCATGTTCAAGTA+AGG | - | chr1_2:55810738-55810757 | Msa0078370:CDS | 30.0% | |
| TCAAAAAAATGAACTCTGGT+TGG | + | chr1_2:55810921-55810940 | None:intergenic | 30.0% | |
| GTTCTCAAAAAAATGAACTC+TGG | + | chr1_2:55810925-55810944 | None:intergenic | 30.0% | |
| CAACAAAGCAAACAACAAAA+AGG | + | chr1_2:55811121-55811140 | None:intergenic | 30.0% | |
| !!! | CTTTTTGTTGTTTGCTTTGT+TGG | - | chr1_2:55811119-55811138 | Msa0078370:CDS | 30.0% |
| ! | AAAGGAGTCCAAAGTATTAT+AGG | + | chr1_2:55811182-55811201 | None:intergenic | 30.0% |
| !! | TTGCAAAGCCATTTTGTTAA+CGG | + | chr1_2:55811442-55811461 | None:intergenic | 30.0% |
| GAAGAGATGTTTATAGTACT+TGG | + | chr1_2:55811616-55811635 | None:intergenic | 30.0% | |
| ! | TTTTCGATCAGTTTCTTATG+GGG | - | chr1_2:55811749-55811768 | Msa0078370:CDS | 30.0% |
| ! | TTCTTTAAGTGGTTTTTCTC+AGG | - | chr1_2:55811773-55811792 | Msa0078370:CDS | 30.0% |
| CTTAGAAGAAACTAACATGA+AGG | - | chr1_2:55812106-55812125 | Msa0078370:intron | 30.0% | |
| ACTAACATGAAGGGTTTATA+TGG | - | chr1_2:55812116-55812135 | Msa0078370:intron | 30.0% | |
| GAAGGGTTTATATGGTTATA+AGG | - | chr1_2:55812124-55812143 | Msa0078370:intron | 30.0% | |
| AAGAGCAAGAACCATAAAAA+GGG | - | chr1_2:55812239-55812258 | Msa0078370:intron | 30.0% | |
| ! | AGAATGTTTGAGCTTGTTTA+AGG | + | chr1_2:55812417-55812436 | None:intergenic | 30.0% |
| TTCTGTAAATTAGCGCATAA+GGG | + | chr1_2:55812912-55812931 | None:intergenic | 30.0% | |
| TTTCTGTAAATTAGCGCATA+AGG | + | chr1_2:55812913-55812932 | None:intergenic | 30.0% | |
| !!! | ATTGCTTGCAACTTTGTTTT+GGG | - | chr1_2:55812977-55812996 | Msa0078370:CDS | 30.0% |
| ! | GATTTTTCACCCAAAAAGAT+TGG | - | chr1_2:55813036-55813055 | Msa0078370:CDS | 30.0% |
| ! | ATCCATTTCCCAATCTTTTT+GGG | + | chr1_2:55813048-55813067 | None:intergenic | 30.0% |
| GTAACAAATTTCATGCAGAT+AGG | + | chr1_2:55813282-55813301 | None:intergenic | 30.0% | |
| TCTACATTGCTTTATGTGTT+GGG | + | chr1_2:55813319-55813338 | None:intergenic | 30.0% | |
| TTCTACATTGCTTTATGTGT+TGG | + | chr1_2:55813320-55813339 | None:intergenic | 30.0% | |
| !!! | TTCTTTTTTTGTCACTGTTG+TGG | - | chr1_2:55813369-55813388 | Msa0078370:intron | 30.0% |
| AGAACATTACCATATACTGT+TGG | - | chr1_2:55813431-55813450 | Msa0078370:intron | 30.0% | |
| GTATTAATGCCAACAGTATA+TGG | + | chr1_2:55813443-55813462 | None:intergenic | 30.0% | |
| AATTCTGACAAAAATAACGC+AGG | - | chr1_2:55813481-55813500 | Msa0078370:five_prime_UTR | 30.0% | |
| !! | TTGATGTTTAGTGGACTTGA+TGG | + | chr1_2:55810248-55810267 | None:intergenic | 35.0% |
| AAGTCCACTAAACATCAACA+TGG | - | chr1_2:55810250-55810269 | Msa0078370:exon | 35.0% | |
| TTAATCAGAACATGGAGGAA+AGG | - | chr1_2:55810309-55810328 | Msa0078370:CDS | 35.0% | |
| ! | ACTAAAGTGCTTGAAAAAGC+TGG | - | chr1_2:55810530-55810549 | Msa0078370:CDS | 35.0% |
| AACAGCACAAGTCTGAATAA+TGG | + | chr1_2:55810591-55810610 | None:intergenic | 35.0% | |
| TTCCGTTTCGTTAGAAATCA+AGG | - | chr1_2:55810689-55810708 | Msa0078370:CDS | 35.0% | |
| GTCCTTGATTTCTAACGAAA+CGG | + | chr1_2:55810694-55810713 | None:intergenic | 35.0% | |
| TTCGTTAGAAATCAAGGACA+CGG | - | chr1_2:55810695-55810714 | Msa0078370:CDS | 35.0% | |
| TCGTTAACGATTGAAGTATG+AGG | + | chr1_2:55810792-55810811 | None:intergenic | 35.0% | |
| TCGTTAACGAGATTCAACTA+AGG | - | chr1_2:55810802-55810821 | Msa0078370:CDS | 35.0% | |
| ! | AGGATTTGCTTCATATCTGT+TGG | - | chr1_2:55810998-55811017 | Msa0078370:CDS | 35.0% |
| ! | GGATTTGCTTCATATCTGTT+GGG | - | chr1_2:55810999-55811018 | Msa0078370:CDS | 35.0% |
| CATATCTGTTGGGATTAAAC+AGG | - | chr1_2:55811009-55811028 | Msa0078370:CDS | 35.0% | |
| TTAAAGAACCTGCATTTGGT+TGG | - | chr1_2:55811084-55811103 | Msa0078370:CDS | 35.0% | |
| TGTCTTAATTCCACTCAGAA+AGG | - | chr1_2:55811148-55811167 | Msa0078370:CDS | 35.0% | |
| !! | TGCAAAGCCATTTTGTTAAC+GGG | + | chr1_2:55811441-55811460 | None:intergenic | 35.0% |
| CACTTGGATAAGGTAAATTG+AGG | + | chr1_2:55811539-55811558 | None:intergenic | 35.0% | |
| CTCAATTTACCTTATCCAAG+TGG | - | chr1_2:55811537-55811556 | Msa0078370:CDS | 35.0% | |
| TCACACACAGGATGATAAAA+TGG | - | chr1_2:55811590-55811609 | Msa0078370:CDS | 35.0% | |
| TATTTCAGGAAGCAAGTACA+TGG | - | chr1_2:55811713-55811732 | Msa0078370:intron | 35.0% | |
| ATTTCAGGAAGCAAGTACAT+GGG | - | chr1_2:55811714-55811733 | Msa0078370:intron | 35.0% | |
| TCTTATGGGGTTTCTTTAAG+TGG | - | chr1_2:55811762-55811781 | Msa0078370:CDS | 35.0% | |
| TTTGAACAGTTTCCAACCTT+TGG | - | chr1_2:55811812-55811831 | Msa0078370:CDS | 35.0% | |
| !! | GATTTTAGCACGACTTTTGT+GGG | - | chr1_2:55811966-55811985 | Msa0078370:CDS | 35.0% |
| ! | TTATGTATCCGCTTGTTGAT+CGG | - | chr1_2:55812057-55812076 | Msa0078370:intron | 35.0% |
| CTATCAATTGCTCTAATCCT+TGG | - | chr1_2:55812152-55812171 | Msa0078370:intron | 35.0% | |
| GACAGTTGAAACTAGAATCT+TGG | + | chr1_2:55812198-55812217 | None:intergenic | 35.0% | |
| !! | ATTCTAGTTTCAACTGTCCT+TGG | - | chr1_2:55812200-55812219 | Msa0078370:intron | 35.0% |
| CAAGAGCAAGAACCATAAAA+AGG | - | chr1_2:55812238-55812257 | Msa0078370:intron | 35.0% | |
| ATCATCAGCAGCTAATTCTA+AGG | + | chr1_2:55812371-55812390 | None:intergenic | 35.0% | |
| ACAAGCTCAAACATTCTTGA+AGG | - | chr1_2:55812420-55812439 | Msa0078370:CDS | 35.0% | |
| !!! | GAAAGTTGCACTATTTTTGC+TGG | - | chr1_2:55812636-55812655 | Msa0078370:intron | 35.0% |
| TCTCATTAAATCCGTGATCT+CGG | - | chr1_2:55812711-55812730 | Msa0078370:intron | 35.0% | |
| ! | TTCTACAAGGCATTTGATGT+GGG | - | chr1_2:55812862-55812881 | Msa0078370:intron | 35.0% |
| TCTGTAAATTAGCGCATAAG+GGG | + | chr1_2:55812911-55812930 | None:intergenic | 35.0% | |
| TGCGCTAATTTACAGAAACA+TGG | - | chr1_2:55812915-55812934 | Msa0078370:intron | 35.0% | |
| TACAGAAACATGGCAGTTAT+AGG | - | chr1_2:55812925-55812944 | Msa0078370:intron | 35.0% | |
| ACAGAAACATGGCAGTTATA+GGG | - | chr1_2:55812926-55812945 | Msa0078370:intron | 35.0% | |
| !! | CATTGCTTGCAACTTTGTTT+TGG | - | chr1_2:55812976-55812995 | Msa0078370:CDS | 35.0% |
| ! | CATCCATTTCCCAATCTTTT+TGG | + | chr1_2:55813049-55813068 | None:intergenic | 35.0% |
| CTTTGCAATTGATATGTGCA+CGG | - | chr1_2:55813113-55813132 | Msa0078370:CDS | 35.0% | |
| TTTGCAATTGATATGTGCAC+GGG | - | chr1_2:55813114-55813133 | Msa0078370:CDS | 35.0% | |
| ATTGCTTCTGGACTAATTTG+CGG | - | chr1_2:55813201-55813220 | Msa0078370:CDS | 35.0% | |
| ACAAATTTCATGCAGATAGG+CGG | + | chr1_2:55813279-55813298 | None:intergenic | 35.0% | |
| ACAAAAATAACGCAGGTTTC+TGG | - | chr1_2:55813488-55813507 | Msa0078370:five_prime_UTR | 35.0% | |
| AAGATGCTTTCTTCCAGCAA+AGG | + | chr1_2:55810026-55810045 | None:intergenic | 40.0% | |
| CTGTCCAATGTTCATCAGAT+TGG | + | chr1_2:55810361-55810380 | None:intergenic | 40.0% | |
| ATGAAGCTGAACCTTACAAC+AGG | - | chr1_2:55810446-55810465 | Msa0078370:CDS | 40.0% | |
| TTGGAACCATTCCTGTTGTA+AGG | + | chr1_2:55810460-55810479 | None:intergenic | 40.0% | |
| GCAGCAGAGACATTCAAATT+TGG | + | chr1_2:55810479-55810498 | None:intergenic | 40.0% | |
| ! | GTATTTTCTTGGCGAGTGAA+TGG | + | chr1_2:55810569-55810588 | None:intergenic | 40.0% |
| ! | TGCTATAGCATTGCTGTTAG+CGG | - | chr1_2:55810614-55810633 | Msa0078370:CDS | 40.0% |
| AGGAAGACATATGTGTTGTC+TGG | - | chr1_2:55811029-55811048 | Msa0078370:CDS | 40.0% | |
| ! | ACATATGTGTTGTCTGGAGT+AGG | - | chr1_2:55811035-55811054 | Msa0078370:CDS | 40.0% |
| GCAGTTAAAGAACCTGCATT+TGG | - | chr1_2:55811080-55811099 | Msa0078370:CDS | 40.0% | |
| ATACTTAACCAATGCTCCTG+GGG | + | chr1_2:55811300-55811319 | None:intergenic | 40.0% | |
| GATACTTAACCAATGCTCCT+GGG | + | chr1_2:55811301-55811320 | None:intergenic | 40.0% | |
| CTTGCACATTCTTCTTATGC+AGG | - | chr1_2:55811500-55811519 | Msa0078370:CDS | 40.0% | |
| GTTGCAAAACCACTTGGATA+AGG | + | chr1_2:55811549-55811568 | None:intergenic | 40.0% | |
| ! | CATCAATGGTTTTCACACAC+AGG | - | chr1_2:55811578-55811597 | Msa0078370:CDS | 40.0% |
| !! | CGATTTTAGCACGACTTTTG+TGG | - | chr1_2:55811965-55811984 | Msa0078370:CDS | 40.0% |
| TTGATCGGCGTAAAGGAAAT+TGG | - | chr1_2:55812072-55812091 | Msa0078370:intron | 40.0% | |
| ATTGCTCTAATCCTTGGTGA+TGG | - | chr1_2:55812158-55812177 | Msa0078370:intron | 40.0% | |
| AAGTATATACGCCATCACCA+AGG | + | chr1_2:55812172-55812191 | None:intergenic | 40.0% | |
| TGATTCTTTCATGTACGCCA+AGG | + | chr1_2:55812220-55812239 | None:intergenic | 40.0% | |
| TTAGCTGCTGATGATATGCA+CGG | - | chr1_2:55812376-55812395 | Msa0078370:intron | 40.0% | |
| ! | GCTTGTTTAAGGTCACCATT+TGG | + | chr1_2:55812406-55812425 | None:intergenic | 40.0% |
| ACATGTTTCCTCAGCTGAAA+TGG | - | chr1_2:55812515-55812534 | Msa0078370:CDS | 40.0% | |
| ACATAGTACCATTTCAGCTG+AGG | + | chr1_2:55812526-55812545 | None:intergenic | 40.0% | |
| AGGTCTCACCGATATAAACA+TGG | - | chr1_2:55812600-55812619 | Msa0078370:intron | 40.0% | |
| ACTGTGACAGGAAAAGAGAA+TGG | - | chr1_2:55812661-55812680 | Msa0078370:intron | 40.0% | |
| AGGAAAAGAGAATGGTGTAG+TGG | - | chr1_2:55812669-55812688 | Msa0078370:intron | 40.0% | |
| ATGTTCGTATGCCAAGTAGT+TGG | - | chr1_2:55812796-55812815 | Msa0078370:intron | 40.0% | |
| CATCAAATGCCTTGTAGAAC+AGG | + | chr1_2:55812861-55812880 | None:intergenic | 40.0% | |
| ! | GTTCTACAAGGCATTTGATG+TGG | - | chr1_2:55812861-55812880 | Msa0078370:intron | 40.0% |
| TTTGATGTGGGAAATCCACA+TGG | - | chr1_2:55812874-55812893 | Msa0078370:intron | 40.0% | |
| CAGAAACATGGCAGTTATAG+GGG | - | chr1_2:55812927-55812946 | Msa0078370:intron | 40.0% | |
| !! | GGGTTCTTTGCTTTTGCAAT+AGG | - | chr1_2:55812997-55813016 | Msa0078370:CDS | 40.0% |
| CACCCAAAAAGATTGGGAAA+TGG | - | chr1_2:55813043-55813062 | Msa0078370:CDS | 40.0% | |
| AACCATCAACTCTGCTTTCT+TGG | + | chr1_2:55813175-55813194 | None:intergenic | 40.0% | |
| ATTAGTCCAGAAGCAATTGC+TGG | + | chr1_2:55813198-55813217 | None:intergenic | 40.0% | |
| ! | TTGCTTCTGGACTAATTTGC+GGG | - | chr1_2:55813202-55813221 | Msa0078370:CDS | 40.0% |
| GAGGAAAGGTTGCCAGTTAT+AGG | - | chr1_2:55810323-55810342 | Msa0078370:CDS | 45.0% | |
| GCTGAACCTTACAACAGGAA+TGG | - | chr1_2:55810451-55810470 | Msa0078370:CDS | 45.0% | |
| ! | TAGCATTGCTGTTAGCGGTA+AGG | - | chr1_2:55810619-55810638 | Msa0078370:CDS | 45.0% |
| TAATCCAGAGTTCGGGTAGA+AGG | + | chr1_2:55810898-55810917 | None:intergenic | 45.0% | |
| !! | TGGTTGGTAATCCAGAGTTC+GGG | + | chr1_2:55810905-55810924 | None:intergenic | 45.0% |
| !! | CTGGTTGGTAATCCAGAGTT+CGG | + | chr1_2:55810906-55810925 | None:intergenic | 45.0% |
| CAGGTTCTTTAACTGCGCTT+GGG | + | chr1_2:55811076-55811095 | None:intergenic | 45.0% | |
| GGACTACAAACCTTTCTGAG+TGG | + | chr1_2:55811161-55811180 | None:intergenic | 45.0% | |
| AGAATGTTAAACAGTGCCCC+AGG | - | chr1_2:55811281-55811300 | Msa0078370:intron | 45.0% | |
| GGATACTTAACCAATGCTCC+TGG | + | chr1_2:55811302-55811321 | None:intergenic | 45.0% | |
| ATTCCTTAACGAGTGCCCTA+GGG | - | chr1_2:55811412-55811431 | Msa0078370:CDS | 45.0% | |
| !! | TCCAAGTGGTTTTGCAACAG+CGG | - | chr1_2:55811551-55811570 | Msa0078370:CDS | 45.0% |
| TTCTCAGGCAAAGAAGACTG+TGG | - | chr1_2:55811788-55811807 | Msa0078370:CDS | 45.0% | |
| CAAGCTTGCAATCCAAAGGT+TGG | + | chr1_2:55811827-55811846 | None:intergenic | 45.0% | |
| CAACCTTTGGATTGCAAGCT+TGG | - | chr1_2:55811825-55811844 | Msa0078370:CDS | 45.0% | |
| CTTCCAAGCTTGCAATCCAA+AGG | + | chr1_2:55811831-55811850 | None:intergenic | 45.0% | |
| CAGAGACAAGTTCACAAGGT+GGG | + | chr1_2:55812009-55812028 | None:intergenic | 45.0% | |
| TAGCTGCTGATGATATGCAC+GGG | - | chr1_2:55812377-55812396 | Msa0078370:intron | 45.0% | |
| GATATGCACGGGAATCCAAA+TGG | - | chr1_2:55812388-55812407 | Msa0078370:intron | 45.0% | |
| !! | TGAAGGAGAGCATTCCAATG+TGG | - | chr1_2:55812437-55812456 | Msa0078370:CDS | 45.0% |
| !! | GAGAGCATTCCAATGTGGAT+CGG | - | chr1_2:55812442-55812461 | Msa0078370:CDS | 45.0% |
| ! | AGAGCATTCCAATGTGGATC+GGG | - | chr1_2:55812443-55812462 | Msa0078370:CDS | 45.0% |
| TTCAGCTGAGGAAACATGTG+CGG | + | chr1_2:55812514-55812533 | None:intergenic | 45.0% | |
| ! | CTCGCATTCTGCAATGCTTT+TGG | - | chr1_2:55812574-55812593 | Msa0078370:intron | 45.0% |
| !!! | TTCTGCAATGCTTTTGGAGC+AGG | - | chr1_2:55812580-55812599 | Msa0078370:intron | 45.0% |
| ! | TTTTTGCTGGCAACTGTGAC+AGG | - | chr1_2:55812649-55812668 | Msa0078370:intron | 45.0% |
| ATTGCAAGACACCGAGATCA+CGG | + | chr1_2:55812725-55812744 | None:intergenic | 45.0% | |
| CAAGTAGTTGGCACTGCAAT+GGG | - | chr1_2:55812808-55812827 | Msa0078370:intron | 45.0% | |
| AAGTAGTTGGCACTGCAATG+GGG | - | chr1_2:55812809-55812828 | Msa0078370:intron | 45.0% | |
| TAGAACAGGAAGAAGCTCAG+AGG | + | chr1_2:55812847-55812866 | None:intergenic | 45.0% | |
| GAGCTTCTTCCTGTTCTACA+AGG | - | chr1_2:55812849-55812868 | Msa0078370:intron | 45.0% | |
| ATGGCAGTTATAGGGGTTCA+AGG | - | chr1_2:55812934-55812953 | Msa0078370:intron | 45.0% | |
| CAAAGTTGCAAGCAATGTCG+AGG | + | chr1_2:55812973-55812992 | None:intergenic | 45.0% | |
| GAAATGGATGCCATTACCGA+TGG | - | chr1_2:55813059-55813078 | Msa0078370:CDS | 45.0% | |
| AAGTATGCCCCTACCAGAAA+CGG | + | chr1_2:55813096-55813115 | None:intergenic | 45.0% | |
| TGATATGTGCACGGGTAGTT+TGG | - | chr1_2:55813122-55813141 | Msa0078370:CDS | 45.0% | |
| CTCCAAGAAAGCAGAGTTGA+TGG | - | chr1_2:55813170-55813189 | Msa0078370:CDS | 45.0% | |
| ATGGTTCCAGCAATTGCTTC+TGG | - | chr1_2:55813189-55813208 | Msa0078370:CDS | 45.0% | |
| ! | TGCTTCTGGACTAATTTGCG+GGG | - | chr1_2:55813203-55813222 | Msa0078370:CDS | 45.0% |
| TGGAATACAGTTCTTGCTGC+AGG | - | chr1_2:55813508-55813527 | Msa0078370:five_prime_UTR | 45.0% | |
| !! | ATAATACTAATATTAATATA+TGG | - | chr1_2:55812315-55812334 | Msa0078370:intron | 5.0% |
| !! | TAATACTAATATTAATATAT+GGG | - | chr1_2:55812316-55812335 | Msa0078370:intron | 5.0% |
| CTTACCTTCTACCCGAACTC+TGG | - | chr1_2:55810891-55810910 | Msa0078370:CDS | 50.0% | |
| TTTGCGCTTGTGTGTGTTGC+AGG | - | chr1_2:55810975-55810994 | Msa0078370:CDS | 50.0% | |
| !! | TTGTCTGGAGTAGGCACTGA+GGG | - | chr1_2:55811044-55811063 | Msa0078370:CDS | 50.0% |
| GCAGGTTCTTTAACTGCGCT+TGG | + | chr1_2:55811077-55811096 | None:intergenic | 50.0% | |
| CCAGACATCCAACCAAATGC+AGG | + | chr1_2:55811095-55811114 | None:intergenic | 50.0% | |
| CCTGCATTTGGTTGGATGTC+TGG | - | chr1_2:55811092-55811111 | Msa0078370:CDS | 50.0% | |
| GATTCCTTAACGAGTGCCCT+AGG | - | chr1_2:55811411-55811430 | Msa0078370:CDS | 50.0% | |
| TTCCTTAACGAGTGCCCTAG+GGG | - | chr1_2:55811413-55811432 | Msa0078370:CDS | 50.0% | |
| ! | TTTGTTAACGGGTGCCCCTA+GGG | + | chr1_2:55811430-55811449 | None:intergenic | 50.0% |
| !! | TTTTGTTAACGGGTGCCCCT+AGG | + | chr1_2:55811431-55811450 | None:intergenic | 50.0% |
| !! | AGGGGCACCCGTTAACAAAA+TGG | - | chr1_2:55811431-55811450 | Msa0078370:CDS | 50.0% |
| ACCGCTGTTGCAAAACCACT+TGG | + | chr1_2:55811555-55811574 | None:intergenic | 50.0% | |
| GCAACAGCGGTTCTCATCAA+TGG | - | chr1_2:55811564-55811583 | Msa0078370:CDS | 50.0% | |
| GCAGAGACAAGTTCACAAGG+TGG | + | chr1_2:55812010-55812029 | None:intergenic | 50.0% | |
| GGAGCAGAGACAAGTTCACA+AGG | + | chr1_2:55812013-55812032 | None:intergenic | 50.0% | |
| GTGAACTTGTCTCTGCTCCT+TGG | - | chr1_2:55812014-55812033 | Msa0078370:CDS | 50.0% | |
| ! | CATAAGAGAGCACAGCTCCA+AGG | + | chr1_2:55812034-55812053 | None:intergenic | 50.0% |
| CTTGGAGCTGTGCTCTCTTA+TGG | - | chr1_2:55812032-55812051 | Msa0078370:intron | 50.0% | |
| CCTTTACGCCGATCAACAAG+CGG | + | chr1_2:55812068-55812087 | None:intergenic | 50.0% | |
| GAGCATTCCAATGTGGATCG+GGG | - | chr1_2:55812444-55812463 | Msa0078370:CDS | 50.0% | |
| TCAGCTGAGGAAACATGTGC+GGG | + | chr1_2:55812513-55812532 | None:intergenic | 50.0% | |
| GCATTGCAGAATGCGAGAGA+TGG | + | chr1_2:55812571-55812590 | None:intergenic | 50.0% | |
| GTGTAGTGGCAGCACTTGTT+GGG | - | chr1_2:55812683-55812702 | Msa0078370:intron | 50.0% | |
| CCATTGCAGTGCCAACTACT+TGG | + | chr1_2:55812810-55812829 | None:intergenic | 50.0% | |
| CCAAGTAGTTGGCACTGCAA+TGG | - | chr1_2:55812807-55812826 | Msa0078370:intron | 50.0% | |
| !! | GGGGCTTTGAATTCTCCATG+TGG | + | chr1_2:55812892-55812911 | None:intergenic | 50.0% |
| GATGCCATTACCGATGGTCA+TGG | - | chr1_2:55813065-55813084 | Msa0078370:CDS | 50.0% | |
| ! | TCTGGACTAATTTGCGGGGA+AGG | - | chr1_2:55813207-55813226 | Msa0078370:CDS | 50.0% |
| ! | TAATTTGCGGGGAAGGACTG+TGG | - | chr1_2:55813214-55813233 | Msa0078370:CDS | 50.0% |
| GCTAGAGCAAGAATAGCAGC+AGG | + | chr1_2:55813246-55813265 | None:intergenic | 50.0% | |
| ! | TTCCAGCAAAGGCGCGGATA+CGG | + | chr1_2:55810015-55810034 | None:intergenic | 55.0% |
| GCTTTCTTCCAGCAAAGGCG+CGG | + | chr1_2:55810021-55810040 | None:intergenic | 55.0% | |
| ! | GTTGTCTGGAGTAGGCACTG+AGG | - | chr1_2:55811043-55811062 | Msa0078370:CDS | 55.0% |
| ! | AAACAGTGCCCCAGGAGCAT+TGG | - | chr1_2:55811289-55811308 | Msa0078370:intron | 55.0% |
| ! | AGCACGACTTTTGTGGGAGC+AGG | - | chr1_2:55811972-55811991 | Msa0078370:CDS | 55.0% |
| ! | CCGCTTGTTGATCGGCGTAA+AGG | - | chr1_2:55812065-55812084 | Msa0078370:intron | 55.0% |
| CATTCCAATGTGGATCGGGG+TGG | - | chr1_2:55812447-55812466 | Msa0078370:CDS | 55.0% | |
| TGGATCGGGGTGGTTGGATA+TGG | - | chr1_2:55812457-55812476 | Msa0078370:CDS | 55.0% | |
| GGTGTAGTGGCAGCACTTGT+TGG | - | chr1_2:55812682-55812701 | Msa0078370:intron | 55.0% | |
| TGGCATACGAACATCGCCCT+GGG | + | chr1_2:55812790-55812809 | None:intergenic | 55.0% | |
| TTGGCATACGAACATCGCCC+TGG | + | chr1_2:55812791-55812810 | None:intergenic | 55.0% | |
| ACGGCCATGACCATCGGTAA+TGG | + | chr1_2:55813072-55813091 | None:intergenic | 55.0% | |
| AACGGTACGGCCATGACCAT+CGG | + | chr1_2:55813078-55813097 | None:intergenic | 55.0% | |
| !! | ATGGCCGTACCGTTTCTGGT+AGG | - | chr1_2:55813084-55813103 | Msa0078370:CDS | 55.0% |
| !! | TGGCCGTACCGTTTCTGGTA+GGG | - | chr1_2:55813085-55813104 | Msa0078370:CDS | 55.0% |
| TGCCCCTACCAGAAACGGTA+CGG | + | chr1_2:55813091-55813110 | None:intergenic | 55.0% | |
| ! | GCAAAGGCGCGGATACGGTA+TGG | + | chr1_2:55810010-55810029 | None:intergenic | 60.0% |
| TACCGTATCCGCGCCTTTGC+TGG | - | chr1_2:55810010-55810029 | Msa0078370:three_prime_UTR | 60.0% | |
| GCGCTTGTGTGTGTTGCAGG+AGG | - | chr1_2:55810978-55810997 | Msa0078370:CDS | 60.0% | |
| ! | TGCCCCTAGGGCACTCGTTA+AGG | + | chr1_2:55811418-55811437 | None:intergenic | 60.0% |
| CCAACCACCCCGATCCACAT+TGG | + | chr1_2:55812454-55812473 | None:intergenic | 60.0% | |
| CCAATGTGGATCGGGGTGGT+TGG | - | chr1_2:55812451-55812470 | Msa0078370:CDS | 60.0% | |
| ! | GTGGCAGCACTTGTTGGGTG+TGG | - | chr1_2:55812688-55812707 | Msa0078370:intron | 60.0% |
| ATTGCACACGCACCTCTCCC+AGG | - | chr1_2:55812770-55812789 | Msa0078370:intron | 60.0% | |
| TTGCACACGCACCTCTCCCA+GGG | - | chr1_2:55812771-55812790 | Msa0078370:intron | 60.0% | |
| TACGAACATCGCCCTGGGAG+AGG | + | chr1_2:55812785-55812804 | None:intergenic | 60.0% | |
| GGTCATGGCCGTACCGTTTC+TGG | - | chr1_2:55813080-55813099 | Msa0078370:CDS | 60.0% | |
| !! | GGCCGTACCGTTTCTGGTAG+GGG | - | chr1_2:55813086-55813105 | Msa0078370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 55810006 | 55813566 | 55810006 | ID=Msa0078370;Name=Msa0078370 |
| chr1_2 | mRNA | 55810006 | 55813566 | 55810006 | ID=Msa0078370-mRNA-1;Parent=Msa0078370;Name=Msa0078370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=121|1|1|1|0.83|0.71|7|258|680 |
| chr1_2 | exon | 55810006 | 55811198 | 55810006 | ID=Msa0078370-mRNA-1:exon:17446;Parent=Msa0078370-mRNA-1 |
| chr1_2 | exon | 55811312 | 55811616 | 55811312 | ID=Msa0078370-mRNA-1:exon:17445;Parent=Msa0078370-mRNA-1 |
| chr1_2 | exon | 55811717 | 55811851 | 55811717 | ID=Msa0078370-mRNA-1:exon:17444;Parent=Msa0078370-mRNA-1 |
| chr1_2 | exon | 55811956 | 55812050 | 55811956 | ID=Msa0078370-mRNA-1:exon:17443;Parent=Msa0078370-mRNA-1 |
| chr1_2 | exon | 55812403 | 55812575 | 55812403 | ID=Msa0078370-mRNA-1:exon:17442;Parent=Msa0078370-mRNA-1 |
| chr1_2 | exon | 55812937 | 55813356 | 55812937 | ID=Msa0078370-mRNA-1:exon:17441;Parent=Msa0078370-mRNA-1 |
| chr1_2 | exon | 55813466 | 55813566 | 55813466 | ID=Msa0078370-mRNA-1:exon:17440;Parent=Msa0078370-mRNA-1 |
| chr1_2 | five_prime_UTR | 55813466 | 55813566 | 55813466 | ID=Msa0078370-mRNA-1:five_prime_utr;Parent=Msa0078370-mRNA-1 |
| chr1_2 | five_prime_UTR | 55813337 | 55813356 | 55813337 | ID=Msa0078370-mRNA-1:five_prime_utr;Parent=Msa0078370-mRNA-1 |
| chr1_2 | CDS | 55812937 | 55813336 | 55812937 | ID=Msa0078370-mRNA-1:cds;Parent=Msa0078370-mRNA-1 |
| chr1_2 | CDS | 55812403 | 55812575 | 55812403 | ID=Msa0078370-mRNA-1:cds;Parent=Msa0078370-mRNA-1 |
| chr1_2 | CDS | 55811956 | 55812050 | 55811956 | ID=Msa0078370-mRNA-1:cds;Parent=Msa0078370-mRNA-1 |
| chr1_2 | CDS | 55811717 | 55811851 | 55811717 | ID=Msa0078370-mRNA-1:cds;Parent=Msa0078370-mRNA-1 |
| chr1_2 | CDS | 55811312 | 55811616 | 55811312 | ID=Msa0078370-mRNA-1:cds;Parent=Msa0078370-mRNA-1 |
| chr1_2 | CDS | 55810264 | 55811198 | 55810264 | ID=Msa0078370-mRNA-1:cds;Parent=Msa0078370-mRNA-1 |
| chr1_2 | three_prime_UTR | 55810006 | 55810263 | 55810006 | ID=Msa0078370-mRNA-1:three_prime_utr;Parent=Msa0078370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
