Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126150 | sp|Q6R3L0|YSL1_ARATH | 70.615 | 667 | 191 | 2 | 16 | 680 | 10 | 673 | 0.0 | 997 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126150 | A0A072VND8 | 98.824 | 680 | 8 | 0 | 1 | 680 | 1 | 680 | 0.0 | 1384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031140 | Msa0126150 | 0.830694 | 2.542733e-55 | -8.615850e-47 |
| Msa0067580 | Msa0126150 | 0.800830 | 1.199001e-48 | -8.615850e-47 |
| Msa0078370 | Msa0126150 | 0.940411 | 2.442178e-100 | -8.615850e-47 |
| Msa0094840 | Msa0126150 | 0.808873 | 2.501016e-50 | -8.615850e-47 |
| Msa0126150 | Msa0171080 | 0.833660 | 4.694825e-56 | -8.615850e-47 |
| Msa0126150 | Msa0365360 | 0.820482 | 6.700391e-53 | -8.615850e-47 |
| Msa0126150 | Msa0513170 | 0.822558 | 2.221050e-53 | -8.615850e-47 |
| Msa0126150 | Msa0641030 | 0.816461 | 5.465466e-52 | -8.615850e-47 |
| Msa0126150 | Msa0739410 | 0.831102 | 2.019323e-55 | -8.615850e-47 |
| Msa0126150 | Msa1445250 | 0.800177 | 1.628698e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126150 | MtrunA17_Chr1g0189011 | 98.824 | 680 | 8 | 0 | 1 | 680 | 1 | 680 | 0.0 | 1384 |
| Msa0126150 | MtrunA17_Chr3g0127441 | 64.662 | 665 | 232 | 2 | 17 | 680 | 4 | 666 | 0.0 | 917 |
| Msa0126150 | MtrunA17_Chr1g0146651 | 62.556 | 673 | 243 | 5 | 11 | 680 | 6 | 672 | 0.0 | 874 |
| Msa0126150 | MtrunA17_Chr3g0119981 | 62.370 | 675 | 240 | 7 | 9 | 677 | 3 | 669 | 0.0 | 867 |
| Msa0126150 | MtrunA17_Chr1g0146591 | 62.085 | 662 | 246 | 4 | 23 | 680 | 15 | 675 | 0.0 | 864 |
| Msa0126150 | MtrunA17_Chr1g0146641 | 61.782 | 662 | 248 | 4 | 23 | 680 | 15 | 675 | 0.0 | 862 |
| Msa0126150 | MtrunA17_Chr7g0224611 | 53.365 | 639 | 289 | 5 | 46 | 677 | 37 | 673 | 0.0 | 726 |
| Msa0126150 | MtrunA17_Chr6g0481821 | 51.638 | 641 | 295 | 7 | 47 | 679 | 66 | 699 | 0.0 | 710 |
| Msa0126150 | MtrunA17_Chr5g0443261 | 51.124 | 667 | 313 | 7 | 22 | 679 | 7 | 669 | 0.0 | 704 |
| Msa0126150 | MtrunA17_Chr3g0109311 | 52.895 | 639 | 292 | 5 | 47 | 679 | 48 | 683 | 0.0 | 697 |
| Msa0126150 | MtrunA17_Chr3g0109321 | 52.426 | 639 | 295 | 5 | 47 | 679 | 42 | 677 | 0.0 | 676 |
| Msa0126150 | MtrunA17_Chr1g0146601 | 63.265 | 490 | 179 | 1 | 192 | 680 | 261 | 750 | 0.0 | 670 |
| Msa0126150 | MtrunA17_Chr1g0146601 | 58.511 | 188 | 65 | 5 | 11 | 196 | 25 | 201 | 8.04e-55 | 200 |
| Msa0126150 | MtrunA17_Chr5g0443301 | 51.887 | 530 | 249 | 4 | 156 | 679 | 11 | 540 | 0.0 | 569 |
| Msa0126150 | MtrunA17_Chr5g0443291 | 50.435 | 115 | 53 | 2 | 22 | 133 | 7 | 120 | 9.71e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126150 | AT4G24120.1 | 70.615 | 667 | 191 | 2 | 16 | 680 | 10 | 673 | 0.0 | 997 |
| Msa0126150 | AT5G53550.3 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 908 |
| Msa0126150 | AT5G53550.1 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 908 |
| Msa0126150 | AT5G53550.6 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 908 |
| Msa0126150 | AT5G53550.5 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 908 |
| Msa0126150 | AT5G53550.2 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 908 |
| Msa0126150 | AT5G24380.1 | 63.664 | 666 | 230 | 4 | 20 | 680 | 5 | 663 | 0.0 | 902 |
| Msa0126150 | AT1G65730.1 | 52.500 | 680 | 298 | 9 | 19 | 679 | 1 | 674 | 0.0 | 731 |
| Msa0126150 | AT5G41000.1 | 51.791 | 670 | 315 | 4 | 18 | 680 | 2 | 670 | 0.0 | 721 |
| Msa0126150 | AT3G27020.1 | 51.194 | 670 | 312 | 6 | 20 | 677 | 4 | 670 | 0.0 | 721 |
| Msa0126150 | AT5G53550.4 | 64.579 | 511 | 178 | 2 | 171 | 680 | 1 | 509 | 0.0 | 711 |
| Msa0126150 | AT1G48370.1 | 52.055 | 657 | 294 | 7 | 40 | 680 | 59 | 710 | 0.0 | 684 |
| Msa0126150 | AT5G41000.2 | 50.526 | 665 | 306 | 4 | 18 | 680 | 2 | 645 | 0.0 | 682 |
| Msa0126150 | AT3G17650.1 | 50.381 | 657 | 306 | 7 | 39 | 680 | 49 | 700 | 0.0 | 674 |
| Msa0126150 | AT3G17650.2 | 50.381 | 657 | 306 | 7 | 39 | 680 | 49 | 700 | 0.0 | 674 |
| Msa0126150 | AT1G48370.2 | 52.134 | 539 | 244 | 5 | 156 | 680 | 9 | 547 | 0.0 | 567 |
| Msa0126150 | AT5G41000.3 | 51.515 | 495 | 232 | 4 | 193 | 680 | 1 | 494 | 0.0 | 534 |
| Msa0126150 | AT5G45450.1 | 48.077 | 208 | 101 | 2 | 474 | 680 | 1 | 202 | 8.29e-65 | 213 |
Find 163 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCATGGCCGTACCGTTTC+TGG | 0.148320 | 1_3:+55068378 | Msa0126150:CDS |
| CATTGCTTGCATCTTTGTTT+TGG | 0.149914 | 1_3:+55068274 | Msa0126150:CDS |
| CTCGCATTCTGCAATGCTTT+TGG | 0.175738 | 1_3:+55067872 | Msa0126150:CDS |
| AGAATGTTTGAGCTTGTTTA+AGG | 0.190142 | 1_3:-55067712 | None:intergenic |
| CTAAACATCAACATGGAATT+TGG | 0.220436 | 1_3:+55065555 | Msa0126150:CDS |
| ATGGTTCCAGCAATTGCTTC+TGG | 0.222492 | 1_3:+55068487 | Msa0126150:CDS |
| AACCATCAACTCTGCTTTCT+TGG | 0.226520 | 1_3:-55068470 | None:intergenic |
| CTTGGAGCTGTGCTCTCTTA+TGG | 0.235520 | 1_3:+55067330 | Msa0126150:CDS |
| CAAGAGCAAGAACCATAAAA+AGG | 0.240574 | 1_3:+55067536 | Msa0126150:CDS |
| GCAGCAGAGACATTCAAATT+TGG | 0.267639 | 1_3:-55065774 | None:intergenic |
| TTGATCGGCGTAAAGGAAAT+TGG | 0.270852 | 1_3:+55067370 | Msa0126150:CDS |
| GAAGGGTTTATATGGTTATA+AGG | 0.272710 | 1_3:+55067422 | Msa0126150:CDS |
| CCTGCATTTGGTTGGATGTC+TGG | 0.275545 | 1_3:+55066390 | Msa0126150:CDS |
| TACCGTATCCGCGCCTTTGC+TGG | 0.281051 | 1_3:+55065308 | Msa0126150:five_prime_UTR |
| AATTCCATGTTGATGTTTAG+TGG | 0.292963 | 1_3:-55065552 | None:intergenic |
| ACTAACATGAAGGGTTTATA+TGG | 0.306840 | 1_3:+55067414 | Msa0126150:CDS |
| ACAGAAACATGGCAGTTATA+GGG | 0.308924 | 1_3:+55068224 | Msa0126150:CDS |
| TCACACACAGGATGATAAAA+TGG | 0.314433 | 1_3:+55066888 | Msa0126150:CDS |
| TTTGAACAGTTTCCAACCTT+TGG | 0.315680 | 1_3:+55067110 | Msa0126150:CDS |
| CTGTCCAATGTTCATCAGAT+TGG | 0.320759 | 1_3:-55065656 | None:intergenic |
| ATTATTTCAGCTCCTATAAC+TGG | 0.321331 | 1_3:-55065633 | None:intergenic |
| TACAGAAACATGGCAGTTAT+AGG | 0.321915 | 1_3:+55068223 | Msa0126150:CDS |
| CAACAAAGCAAACAACAAAA+AGG | 0.327369 | 1_3:-55066416 | None:intergenic |
| CTCCAAGAAAGCAGAGTTGA+TGG | 0.329189 | 1_3:+55068468 | Msa0126150:CDS |
| CAACCTTTGGATTGCAAGCT+TGG | 0.329374 | 1_3:+55067123 | Msa0126150:CDS |
| ATTATATGCCATGTTTATAT+CGG | 0.361843 | 1_3:-55067906 | None:intergenic |
| GTATTAATGCCAACAGTATA+TGG | 0.369274 | 1_3:-55068738 | None:intergenic |
| ATAAACATGGCATATAATTA+CGG | 0.369510 | 1_3:+55067911 | Msa0126150:CDS |
| GAGGAAAGGTTGCCAGTTAT+AGG | 0.369530 | 1_3:+55065621 | Msa0126150:CDS |
| TTTCTGTAAATTAGCGCATA+AGG | 0.374435 | 1_3:-55068208 | None:intergenic |
| GGTGTAGTGGCAGCACTTGT+TGG | 0.376653 | 1_3:+55067980 | Msa0126150:CDS |
| TGGATCGGGGTGGTTGGATA+TGG | 0.377446 | 1_3:+55067755 | Msa0126150:CDS |
| TTGGAACCATTCCTGTTGTA+AGG | 0.381075 | 1_3:-55065755 | None:intergenic |
| CATCAAATGCCTTGTAGAAC+AGG | 0.386991 | 1_3:-55068156 | None:intergenic |
| TTGCTTCTGGACTAATTTGC+GGG | 0.390184 | 1_3:+55068500 | Msa0126150:CDS |
| GTGAACTTGTCTCTGCTCCT+TGG | 0.393687 | 1_3:+55067312 | Msa0126150:CDS |
| GCATGTTTCCTCAGCTGAAA+TGG | 0.394853 | 1_3:+55067813 | Msa0126150:CDS |
| TTCTACATTGCTTTATGTGT+TGG | 0.396022 | 1_3:-55068615 | None:intergenic |
| CTATCAATTGCTCTAATCCT+TGG | 0.398456 | 1_3:+55067450 | Msa0126150:CDS |
| CATATCTGTTGGGATTAAAC+AGG | 0.406006 | 1_3:+55066307 | Msa0126150:CDS |
| TCTACATTGCTTTATGTGTT+GGG | 0.406683 | 1_3:-55068614 | None:intergenic |
| TCTTATGGGGTTTCTTTAAG+TGG | 0.406690 | 1_3:+55067060 | Msa0126150:CDS |
| AGAGCATTCCAATGTGGATC+GGG | 0.410494 | 1_3:+55067741 | Msa0126150:CDS |
| GCAACAGCGGTTCTCATCAA+TGG | 0.410553 | 1_3:+55066862 | Msa0126150:CDS |
| TGCTATAGCATTGCTGTTAG+CGG | 0.415612 | 1_3:+55065912 | Msa0126150:CDS |
| ACAAGCTCAAACATTCTTGA+AGG | 0.418237 | 1_3:+55067718 | Msa0126150:CDS |
| TAAACATGGCATATAATTAC+GGG | 0.419343 | 1_3:+55067912 | Msa0126150:CDS |
| TTGATGTTTAGTGGACTTGA+TGG | 0.419351 | 1_3:-55065543 | None:intergenic |
| GCAGTTAAAGAACCTGCATT+TGG | 0.420611 | 1_3:+55066378 | Msa0126150:CDS |
| TTCTGTAAATTAGCGCATAA+GGG | 0.423993 | 1_3:-55068207 | None:intergenic |
| TGATATGTGCACAGGTAGTT+TGG | 0.424107 | 1_3:+55068420 | Msa0126150:CDS |
| CAGGTTCTTTAACTGCGCTT+GGG | 0.424884 | 1_3:-55066371 | None:intergenic |
| GCAGGTTCTTTAACTGCGCT+TGG | 0.426747 | 1_3:-55066372 | None:intergenic |
| AACAGCACAAGTCTGAATAA+TGG | 0.434716 | 1_3:-55065886 | None:intergenic |
| GACAGTTGAAACTAGAATCT+TGG | 0.437254 | 1_3:-55067493 | None:intergenic |
| AGGATTTGCTTCATATCTGT+TGG | 0.442291 | 1_3:+55066296 | Msa0126150:CDS |
| GCTTGTTTAAGGTCACCATT+TGG | 0.442681 | 1_3:-55067701 | None:intergenic |
| ATGGCAGTTATAGGGGTTCA+AGG | 0.442747 | 1_3:+55068232 | Msa0126150:CDS |
| CAAGTAGTTGGCACTGCAAT+GGG | 0.442885 | 1_3:+55068106 | Msa0126150:CDS |
| TTCCAGCAAAGGCGCGGATA+CGG | 0.448707 | 1_3:-55065310 | None:intergenic |
| GGCCGTACCGTTTCTGGTAG+GGG | 0.452239 | 1_3:+55068384 | Msa0126150:CDS |
| AGGAAGACATATGTGTTGTC+TGG | 0.456289 | 1_3:+55066327 | Msa0126150:CDS |
| ACAGAACACATAACAATAAG+AGG | 0.457854 | 1_3:+55065675 | Msa0126150:CDS |
| GGATTTGCTTCATATCTGTT+GGG | 0.460752 | 1_3:+55066297 | Msa0126150:CDS |
| ATTCTAGTTTCAACTGTCCT+TGG | 0.462241 | 1_3:+55067498 | Msa0126150:CDS |
| ATTGCACACGCACCTCTCCC+AGG | 0.462537 | 1_3:+55068068 | Msa0126150:CDS |
| CCGCTTGTTGATCGGCGTAA+AGG | 0.468950 | 1_3:+55067363 | Msa0126150:CDS |
| CCATTGCAGTGCCAACTACT+TGG | 0.469410 | 1_3:-55068105 | None:intergenic |
| TATTTCAGGAAGCAAGTACA+TGG | 0.472341 | 1_3:+55067011 | Msa0126150:intron |
| TGGAATACAGTTCTTGCTGC+AGG | 0.472709 | 1_3:+55068806 | Msa0126150:three_prime_UTR |
| TTATGTATCCGCTTGTTGAT+CGG | 0.475175 | 1_3:+55067355 | Msa0126150:CDS |
| GTTGCAAAACCACTTGGATA+AGG | 0.475631 | 1_3:-55066844 | None:intergenic |
| TTGGCATACGAACATCGCCC+TGG | 0.477283 | 1_3:-55068086 | None:intergenic |
| ATTAGTCCAGAAGCAATTGC+TGG | 0.479004 | 1_3:-55068493 | None:intergenic |
| GTGTAGTGGCAGCACTTGTT+GGG | 0.479516 | 1_3:+55067981 | Msa0126150:CDS |
| TGTCTTAATTCCACTCAGAA+AGG | 0.483712 | 1_3:+55066446 | Msa0126150:CDS |
| ATTGCTTCTGGACTAATTTG+CGG | 0.484236 | 1_3:+55068499 | Msa0126150:CDS |
| TGGCCGTACCGTTTCTGGTA+GGG | 0.487172 | 1_3:+55068383 | Msa0126150:CDS |
| CAAGCTTGCAATCCAAAGGT+TGG | 0.490018 | 1_3:-55067122 | None:intergenic |
| ATGGCCGTACCGTTTCTGGT+AGG | 0.493169 | 1_3:+55068382 | Msa0126150:CDS |
| TCTGGACTAATTTGCGGGGA+AGG | 0.499946 | 1_3:+55068505 | Msa0126150:CDS |
| GAGCTTCTTCCTGTTCTACA+AGG | 0.503256 | 1_3:+55068147 | Msa0126150:CDS |
| CAGAAACATGGCAGTTATAG+GGG | 0.504777 | 1_3:+55068225 | Msa0126150:CDS |
| TACGAACATCGCCCTGGGAG+AGG | 0.508872 | 1_3:-55068080 | None:intergenic |
| TTGTTTGTGAGTATGATGAT+TGG | 0.510508 | 1_3:+55065699 | Msa0126150:CDS |
| GAGAAAGAACAAATAAACTA+AGG | 0.515796 | 1_3:+55065383 | Msa0126150:five_prime_UTR |
| ATGAAGCTGAACCTTACAAC+AGG | 0.516868 | 1_3:+55065744 | Msa0126150:CDS |
| CCAAGTAGTTGGCACTGCAA+TGG | 0.516937 | 1_3:+55068105 | Msa0126150:CDS |
| CTTCCAAGCTTGCAATCCAA+AGG | 0.518270 | 1_3:-55067126 | None:intergenic |
| GCAAAGGCGCGGATACGGTA+TGG | 0.521818 | 1_3:-55065305 | None:intergenic |
| TTAAAGAACCTGCATTTGGT+TGG | 0.523266 | 1_3:+55066382 | Msa0126150:CDS |
| ACGGCCATGACCATCGGTAA+TGG | 0.525061 | 1_3:-55068367 | None:intergenic |
| CTTAGAAGAAACTAACATGA+AGG | 0.531827 | 1_3:+55067404 | Msa0126150:CDS |
| AAGTATGCCCCTACCAGAAA+CGG | 0.532502 | 1_3:-55068391 | None:intergenic |
| ACCGCTGTTGCAAAACCACT+TGG | 0.532997 | 1_3:-55066850 | None:intergenic |
| TAATCCAATCTGATGAACAT+TGG | 0.534849 | 1_3:+55065652 | Msa0126150:CDS |
| TCTCATTAAATCCGTGATCT+CGG | 0.542009 | 1_3:+55068009 | Msa0126150:CDS |
| AACGGTACGGCCATGACCAT+CGG | 0.544921 | 1_3:-55068373 | None:intergenic |
| GCATTGCAGAATGCGAGAGA+TGG | 0.551488 | 1_3:-55067866 | None:intergenic |
| CCAATGTGGATCGGGGTGGT+TGG | 0.555058 | 1_3:+55067749 | Msa0126150:CDS |
| AAGATGCTTTCTTCCAGCAA+AGG | 0.555540 | 1_3:-55065321 | None:intergenic |
| CCAACCACCCCGATCCACAT+TGG | 0.558976 | 1_3:-55067749 | None:intergenic |
| TTCTACAAGGCATTTGATGT+GGG | 0.559939 | 1_3:+55068160 | Msa0126150:CDS |
| TTTGCAATTGATATGTGCAC+AGG | 0.560248 | 1_3:+55068412 | Msa0126150:CDS |
| GTGGCAGCACTTGTTGGGTG+TGG | 0.560583 | 1_3:+55067986 | Msa0126150:CDS |
| GTAACAAATTTCATGCAGAT+AGG | 0.560658 | 1_3:-55068577 | None:intergenic |
| CCAGACATCCAACCAAATGC+AGG | 0.560714 | 1_3:-55066390 | None:intergenic |
| GTTCTACAAGGCATTTGATG+TGG | 0.561788 | 1_3:+55068159 | Msa0126150:CDS |
| GAGAGCATTCCAATGTGGAT+CGG | 0.564131 | 1_3:+55067740 | Msa0126150:CDS |
| CTCAATTTACCTTATCCAAG+TGG | 0.567851 | 1_3:+55066835 | Msa0126150:CDS |
| TTAGAAGAAACTAACATGAA+GGG | 0.576320 | 1_3:+55067405 | Msa0126150:CDS |
| GATGCCATTACCGATGGTCA+TGG | 0.577978 | 1_3:+55068363 | Msa0126150:CDS |
| CACTTGGATAAGGTAAATTG+AGG | 0.578530 | 1_3:-55066834 | None:intergenic |
| CAGAGACAAGTTCACAAGGT+GGG | 0.586027 | 1_3:-55067304 | None:intergenic |
| TCTGTAAATTAGCGCATAAG+GGG | 0.587143 | 1_3:-55068206 | None:intergenic |
| TGATTCTTTCATGTACGCCA+AGG | 0.587279 | 1_3:-55067515 | None:intergenic |
| GCTAGAGCAAGAATAGCAGC+AGG | 0.590008 | 1_3:-55068541 | None:intergenic |
| TGGCATACGAACATCGCCCT+GGG | 0.590951 | 1_3:-55068085 | None:intergenic |
| TTGCACACGCACCTCTCCCA+GGG | 0.591980 | 1_3:+55068069 | Msa0126150:CDS |
| TTAATCAGAACATGGAGGAA+AGG | 0.596522 | 1_3:+55065607 | Msa0126150:CDS |
| ATTGCAAGACACCGAGATCA+CGG | 0.597470 | 1_3:-55068020 | None:intergenic |
| CCTTTACGCCGATCAACAAG+CGG | 0.598669 | 1_3:-55067363 | None:intergenic |
| TTAGCTGCTGATGATATGCA+CGG | 0.598888 | 1_3:+55067674 | Msa0126150:CDS |
| TTGTCTGGAGTAGGCACTGA+GGG | 0.599934 | 1_3:+55066342 | Msa0126150:CDS |
| GATATGCACGGGAATCCAAA+TGG | 0.600924 | 1_3:+55067686 | Msa0126150:CDS |
| CATAAGAGAGCACAGCTCCA+AGG | 0.601707 | 1_3:-55067329 | None:intergenic |
| ACAAATTTCATGCAGATAGG+CGG | 0.603089 | 1_3:-55068574 | None:intergenic |
| TCAGCTGAGGAAACATGCGC+GGG | 0.603914 | 1_3:-55067808 | None:intergenic |
| ACATATGTGTTGTCTGGAGT+AGG | 0.606766 | 1_3:+55066333 | Msa0126150:CDS |
| TGCGCTAATTTACAGAAACA+TGG | 0.611107 | 1_3:+55068213 | Msa0126150:CDS |
| ATTGCTCTAATCCTTGGTGA+TGG | 0.613675 | 1_3:+55067456 | Msa0126150:CDS |
| ACTGTGACAGGAAAAGAGAA+TGG | 0.615219 | 1_3:+55067959 | Msa0126150:CDS |
| GCTTTCTTCCAGCAAAGGCG+CGG | 0.616342 | 1_3:-55065316 | None:intergenic |
| TGCCCCTACCAGAAACGGTA+CGG | 0.622037 | 1_3:-55068386 | None:intergenic |
| ATGTTCGTATGCCAAGTAGT+TGG | 0.622489 | 1_3:+55068094 | Msa0126150:CDS |
| AGGAAAAGAGAATGGTGTAG+TGG | 0.626117 | 1_3:+55067967 | Msa0126150:CDS |
| GCTGAACCTTACAACAGGAA+TGG | 0.626965 | 1_3:+55065749 | Msa0126150:CDS |
| AGAACATTACCATATACTGT+TGG | 0.627524 | 1_3:+55068729 | Msa0126150:three_prime_UTR |
| TAGCTGCTGATGATATGCAC+GGG | 0.628013 | 1_3:+55067675 | Msa0126150:CDS |
| TTCAGCTGAGGAAACATGCG+CGG | 0.629166 | 1_3:-55067809 | None:intergenic |
| GAAATGGATGCCATTACCGA+TGG | 0.631123 | 1_3:+55068357 | Msa0126150:CDS |
| TAATTTGCGGGGAAGGACTG+TGG | 0.634672 | 1_3:+55068512 | Msa0126150:CDS |
| ACATAGTACCATTTCAGCTG+AGG | 0.638500 | 1_3:-55067821 | None:intergenic |
| TTCTCAGGCAAAGAAGACTG+TGG | 0.640879 | 1_3:+55067086 | Msa0126150:CDS |
| CAAAGATGCAAGCAATGTCG+AGG | 0.653267 | 1_3:-55068268 | None:intergenic |
| AAGAGATATTAATCAGAACA+TGG | 0.654492 | 1_3:+55065599 | Msa0126150:CDS |
| GGAGCAGAGACAAGTTCACA+AGG | 0.657179 | 1_3:-55067308 | None:intergenic |
| GAGCATTCCAATGTGGATCG+GGG | 0.663368 | 1_3:+55067742 | Msa0126150:CDS |
| AAGTCCACTAAACATCAACA+TGG | 0.666317 | 1_3:+55065548 | Msa0126150:CDS |
| ATTTCAGGAAGCAAGTACAT+GGG | 0.670330 | 1_3:+55067012 | Msa0126150:intron |
| AGGTCTCACCGATATAAACA+TGG | 0.670610 | 1_3:+55067898 | Msa0126150:CDS |
| TTTGATGTGGGAAATCCACA+TGG | 0.672631 | 1_3:+55068172 | Msa0126150:CDS |
| TGAAGGAGAGCATTCCAATG+TGG | 0.677015 | 1_3:+55067735 | Msa0126150:CDS |
| TAGAACAGGAAGAAGCTCAG+AGG | 0.678038 | 1_3:-55068142 | None:intergenic |
| TGCTTCTGGACTAATTTGCG+GGG | 0.681116 | 1_3:+55068501 | Msa0126150:CDS |
| GGACTACAAACCTTTCTGAG+TGG | 0.685333 | 1_3:-55066456 | None:intergenic |
| GGGGCTTTGAATTCTCCATG+TGG | 0.688129 | 1_3:-55068187 | None:intergenic |
| GCAGAGACAAGTTCACAAGG+TGG | 0.689164 | 1_3:-55067305 | None:intergenic |
| CATTCCAATGTGGATCGGGG+TGG | 0.693940 | 1_3:+55067745 | Msa0126150:CDS |
| AAGTATATACGCCATCACCA+AGG | 0.720711 | 1_3:-55067467 | None:intergenic |
| AGATATTAATCAGAACATGG+AGG | 0.737419 | 1_3:+55065602 | Msa0126150:CDS |
| AAGTAGTTGGCACTGCAATG+GGG | 0.753918 | 1_3:+55068107 | Msa0126150:CDS |
| GTTGTCTGGAGTAGGCACTG+AGG | 0.773435 | 1_3:+55066341 | Msa0126150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATATTATAATATAAGA+TGG | - | chr1_3:55066998-55067017 | None:intergenic | 10.0% |
| !! | ATCTTATATTATAATATTTC+AGG | + | chr1_3:55066997-55067016 | Msa0126150:intron | 10.0% |
| !!! | TTAATAAAATCTACTTCTTT+TGG | - | chr1_3:55066621-55066640 | None:intergenic | 15.0% |
| !!! | AAGTAGATTTTATTAAAAAG+TGG | + | chr1_3:55066625-55066644 | Msa0126150:intron | 15.0% |
| !! | TCAAGCATATAATATATAAT+TGG | + | chr1_3:55067167-55067186 | Msa0126150:intron | 15.0% |
| !! | CATATAATATATAATTGGTT+TGG | + | chr1_3:55067172-55067191 | Msa0126150:intron | 15.0% |
| !! | ATGTTACTAATCTTATTATT+TGG | + | chr1_3:55067217-55067236 | Msa0126150:intron | 15.0% |
| !! | AAAAAGAAAACAAAAAAGAA+AGG | - | chr1_3:55068655-55068674 | None:intergenic | 15.0% |
| !! | GAAAATGATAAATATGTAGT+AGG | - | chr1_3:55065950-55065969 | None:intergenic | 20.0% |
| !!! | TCATTTTTTTGAGAACAAAA+TGG | + | chr1_3:55066227-55066246 | Msa0126150:intron | 20.0% |
| !!! | ATCCAAATTTTTGTACAAAA+AGG | - | chr1_3:55066498-55066517 | None:intergenic | 20.0% |
| !! | TAACATTCTCCTTAATTAAT+TGG | - | chr1_3:55066568-55066587 | None:intergenic | 20.0% |
| !!! | TTAATTAGACACTGAATTTT+TGG | - | chr1_3:55066778-55066797 | None:intergenic | 20.0% |
| !! | GAAAAATTCAAAAGAAGAAA+GGG | - | chr1_3:55067589-55067608 | None:intergenic | 20.0% |
| !! | TGAAAAATTCAAAAGAAGAA+AGG | - | chr1_3:55067590-55067609 | None:intergenic | 20.0% |
| !! | ATTATATGCCATGTTTATAT+CGG | - | chr1_3:55067909-55067928 | None:intergenic | 20.0% |
| !! | ATAAACATGGCATATAATTA+CGG | + | chr1_3:55067911-55067930 | Msa0126150:CDS | 20.0% |
| !!! | TTTTTCTTTTAGTTTTGTTG+GGG | - | chr1_3:55068843-55068862 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTTTAGTTTTGTT+GGG | - | chr1_3:55068844-55068863 | None:intergenic | 20.0% |
| ! | GAGAAAGAACAAATAAACTA+AGG | + | chr1_3:55065383-55065402 | Msa0126150:five_prime_UTR | 25.0% |
| ! | TAATATAGTAAAGTTGTGAC+AGG | + | chr1_3:55065492-55065511 | Msa0126150:intron | 25.0% |
| ! | AAGAGATATTAATCAGAACA+TGG | + | chr1_3:55065599-55065618 | Msa0126150:CDS | 25.0% |
| !! | TCTGAATAATGGTATTTTCT+TGG | - | chr1_3:55065878-55065897 | None:intergenic | 25.0% |
| ! | TTTGTAGTCCTATAATACTT+TGG | + | chr1_3:55066469-55066488 | Msa0126150:intron | 25.0% |
| !! | CTCCTTTTTGTACAAAAATT+TGG | + | chr1_3:55066493-55066512 | Msa0126150:intron | 25.0% |
| !!! | CATTTAAAAGTACTGAAAGA+TGG | - | chr1_3:55066534-55066553 | None:intergenic | 25.0% |
| ! | AAAGAAGCTCCAATTAATTA+AGG | + | chr1_3:55066556-55066575 | Msa0126150:intron | 25.0% |
| !!! | AACTTTTGTTTGTTGCAATT+TGG | + | chr1_3:55066947-55066966 | Msa0126150:intron | 25.0% |
| ! | TGTTGCAATTTGGAAAATAA+AGG | + | chr1_3:55066957-55066976 | Msa0126150:intron | 25.0% |
| !!! | ATTTTTCGATCAGTTTCTTA+TGG | + | chr1_3:55067045-55067064 | Msa0126150:CDS | 25.0% |
| !!! | TTTTTCGATCAGTTTCTTAT+GGG | + | chr1_3:55067046-55067065 | Msa0126150:CDS | 25.0% |
| !! | TAGTTTCTTCTAAGTTTTCA+GGG | - | chr1_3:55067398-55067417 | None:intergenic | 25.0% |
| !! | TTAGTTTCTTCTAAGTTTTC+AGG | - | chr1_3:55067399-55067418 | None:intergenic | 25.0% |
| ! | TTAGAAGAAACTAACATGAA+GGG | + | chr1_3:55067405-55067424 | Msa0126150:CDS | 25.0% |
| !! | TATGTTCTTTACCCTTTTTA+TGG | - | chr1_3:55067551-55067570 | None:intergenic | 25.0% |
| ! | TAAACATGGCATATAATTAC+GGG | + | chr1_3:55067912-55067931 | Msa0126150:CDS | 25.0% |
| !! | ATTTTTCACCCAAAAAGATT+GGG | + | chr1_3:55068335-55068354 | Msa0126150:CDS | 25.0% |
| !!! | TTTTCTTTTAGTTTTGTTGG+GGG | - | chr1_3:55068842-55068861 | None:intergenic | 25.0% |
| !!! | GGTTTTTCTTTTAGTTTTGT+TGG | - | chr1_3:55068845-55068864 | None:intergenic | 25.0% |
| ACATAGTATACATCAGACAA+AGG | - | chr1_3:55065467-55065486 | None:intergenic | 30.0% | |
| AATTCCATGTTGATGTTTAG+TGG | - | chr1_3:55065555-55065574 | None:intergenic | 30.0% | |
| CTAAACATCAACATGGAATT+TGG | + | chr1_3:55065555-55065574 | Msa0126150:CDS | 30.0% | |
| GGAATTTGGAGAGAAAAAAA+TGG | + | chr1_3:55065569-55065588 | Msa0126150:CDS | 30.0% | |
| AGATATTAATCAGAACATGG+AGG | + | chr1_3:55065602-55065621 | Msa0126150:CDS | 30.0% | |
| ATTATTTCAGCTCCTATAAC+TGG | - | chr1_3:55065636-55065655 | None:intergenic | 30.0% | |
| TAATCCAATCTGATGAACAT+TGG | + | chr1_3:55065652-55065671 | Msa0126150:CDS | 30.0% | |
| ACAGAACACATAACAATAAG+AGG | + | chr1_3:55065675-55065694 | Msa0126150:CDS | 30.0% | |
| TTGTTTGTGAGTATGATGAT+TGG | + | chr1_3:55065699-55065718 | Msa0126150:CDS | 30.0% | |
| ! | CTTTTGTGTTTGTAAGAAGT+TGG | + | chr1_3:55065805-55065824 | Msa0126150:CDS | 30.0% |
| AAATCAGATCATGTCAAGTA+AGG | + | chr1_3:55066035-55066054 | Msa0126150:intron | 30.0% | |
| TCAAAAAAATGAACTCTGGT+TGG | - | chr1_3:55066219-55066238 | None:intergenic | 30.0% | |
| GTTCTCAAAAAAATGAACTC+TGG | - | chr1_3:55066223-55066242 | None:intergenic | 30.0% | |
| CAACAAAGCAAACAACAAAA+AGG | - | chr1_3:55066419-55066438 | None:intergenic | 30.0% | |
| !!! | CTTTTTGTTGTTTGCTTTGT+TGG | + | chr1_3:55066417-55066436 | Msa0126150:CDS | 30.0% |
| ! | AAAGGAGTCCAAAGTATTAT+AGG | - | chr1_3:55066480-55066499 | None:intergenic | 30.0% |
| !! | TTGCAAAGCCATTTTGTTAA+CGG | - | chr1_3:55066740-55066759 | None:intergenic | 30.0% |
| GAAGAGATGTTTATAGTACT+TGG | - | chr1_3:55066914-55066933 | None:intergenic | 30.0% | |
| ! | TTTTCGATCAGTTTCTTATG+GGG | + | chr1_3:55067047-55067066 | Msa0126150:CDS | 30.0% |
| ! | TTCTTTAAGTGGTTTTTCTC+AGG | + | chr1_3:55067071-55067090 | Msa0126150:CDS | 30.0% |
| CTTAGAAGAAACTAACATGA+AGG | + | chr1_3:55067404-55067423 | Msa0126150:CDS | 30.0% | |
| ACTAACATGAAGGGTTTATA+TGG | + | chr1_3:55067414-55067433 | Msa0126150:CDS | 30.0% | |
| GAAGGGTTTATATGGTTATA+AGG | + | chr1_3:55067422-55067441 | Msa0126150:CDS | 30.0% | |
| AAGAGCAAGAACCATAAAAA+GGG | + | chr1_3:55067537-55067556 | Msa0126150:CDS | 30.0% | |
| ! | AGAATGTTTGAGCTTGTTTA+AGG | - | chr1_3:55067715-55067734 | None:intergenic | 30.0% |
| TTCTGTAAATTAGCGCATAA+GGG | - | chr1_3:55068210-55068229 | None:intergenic | 30.0% | |
| TTTCTGTAAATTAGCGCATA+AGG | - | chr1_3:55068211-55068230 | None:intergenic | 30.0% | |
| !!! | ATTGCTTGCATCTTTGTTTT+GGG | + | chr1_3:55068275-55068294 | Msa0126150:CDS | 30.0% |
| ! | GATTTTTCACCCAAAAAGAT+TGG | + | chr1_3:55068334-55068353 | Msa0126150:CDS | 30.0% |
| ! | ATCCATTTCCCAATCTTTTT+GGG | - | chr1_3:55068346-55068365 | None:intergenic | 30.0% |
| GTAACAAATTTCATGCAGAT+AGG | - | chr1_3:55068580-55068599 | None:intergenic | 30.0% | |
| TCTACATTGCTTTATGTGTT+GGG | - | chr1_3:55068617-55068636 | None:intergenic | 30.0% | |
| TTCTACATTGCTTTATGTGT+TGG | - | chr1_3:55068618-55068637 | None:intergenic | 30.0% | |
| !!! | TTCTTTTTTTGTCACTGTTG+TGG | + | chr1_3:55068667-55068686 | Msa0126150:three_prime_UTR | 30.0% |
| AGAACATTACCATATACTGT+TGG | + | chr1_3:55068729-55068748 | Msa0126150:three_prime_UTR | 30.0% | |
| GTATTAATGCCAACAGTATA+TGG | - | chr1_3:55068741-55068760 | None:intergenic | 30.0% | |
| AATTCTGACAAAAATAACGC+AGG | + | chr1_3:55068779-55068798 | Msa0126150:three_prime_UTR | 30.0% | |
| !! | TTGATGTTTAGTGGACTTGA+TGG | - | chr1_3:55065546-55065565 | None:intergenic | 35.0% |
| AAGTCCACTAAACATCAACA+TGG | + | chr1_3:55065548-55065567 | Msa0126150:CDS | 35.0% | |
| TTAATCAGAACATGGAGGAA+AGG | + | chr1_3:55065607-55065626 | Msa0126150:CDS | 35.0% | |
| ! | ACTAAAGTGCTTGAAAAAGC+TGG | + | chr1_3:55065828-55065847 | Msa0126150:CDS | 35.0% |
| AACAGCACAAGTCTGAATAA+TGG | - | chr1_3:55065889-55065908 | None:intergenic | 35.0% | |
| TTCCGTTTCGTTAGAAATCA+AGG | + | chr1_3:55065987-55066006 | Msa0126150:intron | 35.0% | |
| GTCCTTGATTTCTAACGAAA+CGG | - | chr1_3:55065992-55066011 | None:intergenic | 35.0% | |
| TTCGTTAGAAATCAAGGACA+CGG | + | chr1_3:55065993-55066012 | Msa0126150:intron | 35.0% | |
| TCGTTAACGATTGAAGTATG+AGG | - | chr1_3:55066090-55066109 | None:intergenic | 35.0% | |
| TCGTTAACGAGATTCAACTA+AGG | + | chr1_3:55066100-55066119 | Msa0126150:intron | 35.0% | |
| ! | AGGATTTGCTTCATATCTGT+TGG | + | chr1_3:55066296-55066315 | Msa0126150:CDS | 35.0% |
| ! | GGATTTGCTTCATATCTGTT+GGG | + | chr1_3:55066297-55066316 | Msa0126150:CDS | 35.0% |
| CATATCTGTTGGGATTAAAC+AGG | + | chr1_3:55066307-55066326 | Msa0126150:CDS | 35.0% | |
| TTAAAGAACCTGCATTTGGT+TGG | + | chr1_3:55066382-55066401 | Msa0126150:CDS | 35.0% | |
| TGTCTTAATTCCACTCAGAA+AGG | + | chr1_3:55066446-55066465 | Msa0126150:CDS | 35.0% | |
| !! | TGCAAAGCCATTTTGTTAAC+GGG | - | chr1_3:55066739-55066758 | None:intergenic | 35.0% |
| CACTTGGATAAGGTAAATTG+AGG | - | chr1_3:55066837-55066856 | None:intergenic | 35.0% | |
| CTCAATTTACCTTATCCAAG+TGG | + | chr1_3:55066835-55066854 | Msa0126150:CDS | 35.0% | |
| TCACACACAGGATGATAAAA+TGG | + | chr1_3:55066888-55066907 | Msa0126150:CDS | 35.0% | |
| TATTTCAGGAAGCAAGTACA+TGG | + | chr1_3:55067011-55067030 | Msa0126150:intron | 35.0% | |
| ATTTCAGGAAGCAAGTACAT+GGG | + | chr1_3:55067012-55067031 | Msa0126150:intron | 35.0% | |
| TCTTATGGGGTTTCTTTAAG+TGG | + | chr1_3:55067060-55067079 | Msa0126150:CDS | 35.0% | |
| TTTGAACAGTTTCCAACCTT+TGG | + | chr1_3:55067110-55067129 | Msa0126150:CDS | 35.0% | |
| !! | GATTTTAGCACGACTTTTGT+GGG | + | chr1_3:55067264-55067283 | Msa0126150:CDS | 35.0% |
| ! | TTATGTATCCGCTTGTTGAT+CGG | + | chr1_3:55067355-55067374 | Msa0126150:CDS | 35.0% |
| CTATCAATTGCTCTAATCCT+TGG | + | chr1_3:55067450-55067469 | Msa0126150:CDS | 35.0% | |
| GACAGTTGAAACTAGAATCT+TGG | - | chr1_3:55067496-55067515 | None:intergenic | 35.0% | |
| !! | ATTCTAGTTTCAACTGTCCT+TGG | + | chr1_3:55067498-55067517 | Msa0126150:CDS | 35.0% |
| CAAGAGCAAGAACCATAAAA+AGG | + | chr1_3:55067536-55067555 | Msa0126150:CDS | 35.0% | |
| ATCATCAGCAGCTAATTCTA+AGG | - | chr1_3:55067669-55067688 | None:intergenic | 35.0% | |
| ACAAGCTCAAACATTCTTGA+AGG | + | chr1_3:55067718-55067737 | Msa0126150:CDS | 35.0% | |
| !!! | GAAAGTTGCACTATTTTTGC+TGG | + | chr1_3:55067934-55067953 | Msa0126150:CDS | 35.0% |
| TCTCATTAAATCCGTGATCT+CGG | + | chr1_3:55068009-55068028 | Msa0126150:CDS | 35.0% | |
| ! | TTCTACAAGGCATTTGATGT+GGG | + | chr1_3:55068160-55068179 | Msa0126150:CDS | 35.0% |
| TCTGTAAATTAGCGCATAAG+GGG | - | chr1_3:55068209-55068228 | None:intergenic | 35.0% | |
| TGCGCTAATTTACAGAAACA+TGG | + | chr1_3:55068213-55068232 | Msa0126150:CDS | 35.0% | |
| TACAGAAACATGGCAGTTAT+AGG | + | chr1_3:55068223-55068242 | Msa0126150:CDS | 35.0% | |
| ACAGAAACATGGCAGTTATA+GGG | + | chr1_3:55068224-55068243 | Msa0126150:CDS | 35.0% | |
| !! | CATTGCTTGCATCTTTGTTT+TGG | + | chr1_3:55068274-55068293 | Msa0126150:CDS | 35.0% |
| ! | CATCCATTTCCCAATCTTTT+TGG | - | chr1_3:55068347-55068366 | None:intergenic | 35.0% |
| TTTGCAATTGATATGTGCAC+AGG | + | chr1_3:55068412-55068431 | Msa0126150:CDS | 35.0% | |
| ATTGCTTCTGGACTAATTTG+CGG | + | chr1_3:55068499-55068518 | Msa0126150:CDS | 35.0% | |
| ACAAATTTCATGCAGATAGG+CGG | - | chr1_3:55068577-55068596 | None:intergenic | 35.0% | |
| ACAAAAATAACGCAGGTTTC+TGG | + | chr1_3:55068786-55068805 | Msa0126150:three_prime_UTR | 35.0% | |
| AAGATGCTTTCTTCCAGCAA+AGG | - | chr1_3:55065324-55065343 | None:intergenic | 40.0% | |
| CTGTCCAATGTTCATCAGAT+TGG | - | chr1_3:55065659-55065678 | None:intergenic | 40.0% | |
| ATGAAGCTGAACCTTACAAC+AGG | + | chr1_3:55065744-55065763 | Msa0126150:CDS | 40.0% | |
| TTGGAACCATTCCTGTTGTA+AGG | - | chr1_3:55065758-55065777 | None:intergenic | 40.0% | |
| GCAGCAGAGACATTCAAATT+TGG | - | chr1_3:55065777-55065796 | None:intergenic | 40.0% | |
| ! | GTATTTTCTTGGCGAGTGAA+TGG | - | chr1_3:55065867-55065886 | None:intergenic | 40.0% |
| ! | TGCTATAGCATTGCTGTTAG+CGG | + | chr1_3:55065912-55065931 | Msa0126150:CDS | 40.0% |
| TAATCCAGAGTTCGGTTAGA+AGG | - | chr1_3:55066196-55066215 | None:intergenic | 40.0% | |
| AGGAAGACATATGTGTTGTC+TGG | + | chr1_3:55066327-55066346 | Msa0126150:CDS | 40.0% | |
| ! | ACATATGTGTTGTCTGGAGT+AGG | + | chr1_3:55066333-55066352 | Msa0126150:CDS | 40.0% |
| GCAGTTAAAGAACCTGCATT+TGG | + | chr1_3:55066378-55066397 | Msa0126150:CDS | 40.0% | |
| ATACTTAACCAATGCTCCTG+GGG | - | chr1_3:55066598-55066617 | None:intergenic | 40.0% | |
| GATACTTAACCAATGCTCCT+GGG | - | chr1_3:55066599-55066618 | None:intergenic | 40.0% | |
| CTTGCACATTCTTCTTATGC+AGG | + | chr1_3:55066798-55066817 | Msa0126150:intron | 40.0% | |
| GTTGCAAAACCACTTGGATA+AGG | - | chr1_3:55066847-55066866 | None:intergenic | 40.0% | |
| ! | CATCAATGGTTTTCACACAC+AGG | + | chr1_3:55066876-55066895 | Msa0126150:CDS | 40.0% |
| !! | CGATTTTAGCACGACTTTTG+TGG | + | chr1_3:55067263-55067282 | Msa0126150:CDS | 40.0% |
| TTGATCGGCGTAAAGGAAAT+TGG | + | chr1_3:55067370-55067389 | Msa0126150:CDS | 40.0% | |
| ATTGCTCTAATCCTTGGTGA+TGG | + | chr1_3:55067456-55067475 | Msa0126150:CDS | 40.0% | |
| AAGTATATACGCCATCACCA+AGG | - | chr1_3:55067470-55067489 | None:intergenic | 40.0% | |
| TGATTCTTTCATGTACGCCA+AGG | - | chr1_3:55067518-55067537 | None:intergenic | 40.0% | |
| TTAGCTGCTGATGATATGCA+CGG | + | chr1_3:55067674-55067693 | Msa0126150:CDS | 40.0% | |
| ! | GCTTGTTTAAGGTCACCATT+TGG | - | chr1_3:55067704-55067723 | None:intergenic | 40.0% |
| ACATAGTACCATTTCAGCTG+AGG | - | chr1_3:55067824-55067843 | None:intergenic | 40.0% | |
| AGGTCTCACCGATATAAACA+TGG | + | chr1_3:55067898-55067917 | Msa0126150:CDS | 40.0% | |
| ACTGTGACAGGAAAAGAGAA+TGG | + | chr1_3:55067959-55067978 | Msa0126150:CDS | 40.0% | |
| AGGAAAAGAGAATGGTGTAG+TGG | + | chr1_3:55067967-55067986 | Msa0126150:CDS | 40.0% | |
| ATGTTCGTATGCCAAGTAGT+TGG | + | chr1_3:55068094-55068113 | Msa0126150:CDS | 40.0% | |
| CATCAAATGCCTTGTAGAAC+AGG | - | chr1_3:55068159-55068178 | None:intergenic | 40.0% | |
| ! | GTTCTACAAGGCATTTGATG+TGG | + | chr1_3:55068159-55068178 | Msa0126150:CDS | 40.0% |
| TTTGATGTGGGAAATCCACA+TGG | + | chr1_3:55068172-55068191 | Msa0126150:CDS | 40.0% | |
| CAGAAACATGGCAGTTATAG+GGG | + | chr1_3:55068225-55068244 | Msa0126150:CDS | 40.0% | |
| !! | GGGTTCTTTGCTTTTGCAAT+AGG | + | chr1_3:55068295-55068314 | Msa0126150:CDS | 40.0% |
| CACCCAAAAAGATTGGGAAA+TGG | + | chr1_3:55068341-55068360 | Msa0126150:CDS | 40.0% | |
| TGATATGTGCACAGGTAGTT+TGG | + | chr1_3:55068420-55068439 | Msa0126150:CDS | 40.0% | |
| AACCATCAACTCTGCTTTCT+TGG | - | chr1_3:55068473-55068492 | None:intergenic | 40.0% | |
| ATTAGTCCAGAAGCAATTGC+TGG | - | chr1_3:55068496-55068515 | None:intergenic | 40.0% | |
| ! | TTGCTTCTGGACTAATTTGC+GGG | + | chr1_3:55068500-55068519 | Msa0126150:CDS | 40.0% |
| GAGGAAAGGTTGCCAGTTAT+AGG | + | chr1_3:55065621-55065640 | Msa0126150:CDS | 45.0% | |
| GCTGAACCTTACAACAGGAA+TGG | + | chr1_3:55065749-55065768 | Msa0126150:CDS | 45.0% | |
| ! | TAGCATTGCTGTTAGCGGTA+AGG | + | chr1_3:55065917-55065936 | Msa0126150:intron | 45.0% |
| CTTACCTTCTAACCGAACTC+TGG | + | chr1_3:55066189-55066208 | Msa0126150:intron | 45.0% | |
| !! | CTGGTTGGTAATCCAGAGTT+CGG | - | chr1_3:55066204-55066223 | None:intergenic | 45.0% |
| TTTGCGCTTGTGTGTGTTGT+AGG | + | chr1_3:55066273-55066292 | Msa0126150:intron | 45.0% | |
| CAGGTTCTTTAACTGCGCTT+GGG | - | chr1_3:55066374-55066393 | None:intergenic | 45.0% | |
| GGACTACAAACCTTTCTGAG+TGG | - | chr1_3:55066459-55066478 | None:intergenic | 45.0% | |
| AGAATGTTAAACAGTGCCCC+AGG | + | chr1_3:55066579-55066598 | Msa0126150:intron | 45.0% | |
| GGATACTTAACCAATGCTCC+TGG | - | chr1_3:55066600-55066619 | None:intergenic | 45.0% | |
| ATTCCTTAACGAGTGCCCTA+GGG | + | chr1_3:55066710-55066729 | Msa0126150:intron | 45.0% | |
| !! | TCCAAGTGGTTTTGCAACAG+CGG | + | chr1_3:55066849-55066868 | Msa0126150:CDS | 45.0% |
| TTCTCAGGCAAAGAAGACTG+TGG | + | chr1_3:55067086-55067105 | Msa0126150:CDS | 45.0% | |
| CAAGCTTGCAATCCAAAGGT+TGG | - | chr1_3:55067125-55067144 | None:intergenic | 45.0% | |
| CAACCTTTGGATTGCAAGCT+TGG | + | chr1_3:55067123-55067142 | Msa0126150:CDS | 45.0% | |
| CTTCCAAGCTTGCAATCCAA+AGG | - | chr1_3:55067129-55067148 | None:intergenic | 45.0% | |
| CAGAGACAAGTTCACAAGGT+GGG | - | chr1_3:55067307-55067326 | None:intergenic | 45.0% | |
| TAGCTGCTGATGATATGCAC+GGG | + | chr1_3:55067675-55067694 | Msa0126150:CDS | 45.0% | |
| GATATGCACGGGAATCCAAA+TGG | + | chr1_3:55067686-55067705 | Msa0126150:CDS | 45.0% | |
| !! | TGAAGGAGAGCATTCCAATG+TGG | + | chr1_3:55067735-55067754 | Msa0126150:CDS | 45.0% |
| !! | GAGAGCATTCCAATGTGGAT+CGG | + | chr1_3:55067740-55067759 | Msa0126150:CDS | 45.0% |
| ! | AGAGCATTCCAATGTGGATC+GGG | + | chr1_3:55067741-55067760 | Msa0126150:CDS | 45.0% |
| GCATGTTTCCTCAGCTGAAA+TGG | + | chr1_3:55067813-55067832 | Msa0126150:CDS | 45.0% | |
| ! | CTCGCATTCTGCAATGCTTT+TGG | + | chr1_3:55067872-55067891 | Msa0126150:CDS | 45.0% |
| !!! | TTCTGCAATGCTTTTGGAGC+AGG | + | chr1_3:55067878-55067897 | Msa0126150:CDS | 45.0% |
| ! | TTTTTGCTGGCAACTGTGAC+AGG | + | chr1_3:55067947-55067966 | Msa0126150:CDS | 45.0% |
| ATTGCAAGACACCGAGATCA+CGG | - | chr1_3:55068023-55068042 | None:intergenic | 45.0% | |
| CAAGTAGTTGGCACTGCAAT+GGG | + | chr1_3:55068106-55068125 | Msa0126150:CDS | 45.0% | |
| AAGTAGTTGGCACTGCAATG+GGG | + | chr1_3:55068107-55068126 | Msa0126150:CDS | 45.0% | |
| TAGAACAGGAAGAAGCTCAG+AGG | - | chr1_3:55068145-55068164 | None:intergenic | 45.0% | |
| GAGCTTCTTCCTGTTCTACA+AGG | + | chr1_3:55068147-55068166 | Msa0126150:CDS | 45.0% | |
| ATGGCAGTTATAGGGGTTCA+AGG | + | chr1_3:55068232-55068251 | Msa0126150:CDS | 45.0% | |
| CAAAGATGCAAGCAATGTCG+AGG | - | chr1_3:55068271-55068290 | None:intergenic | 45.0% | |
| GAAATGGATGCCATTACCGA+TGG | + | chr1_3:55068357-55068376 | Msa0126150:CDS | 45.0% | |
| AAGTATGCCCCTACCAGAAA+CGG | - | chr1_3:55068394-55068413 | None:intergenic | 45.0% | |
| CTCCAAGAAAGCAGAGTTGA+TGG | + | chr1_3:55068468-55068487 | Msa0126150:CDS | 45.0% | |
| ATGGTTCCAGCAATTGCTTC+TGG | + | chr1_3:55068487-55068506 | Msa0126150:CDS | 45.0% | |
| ! | TGCTTCTGGACTAATTTGCG+GGG | + | chr1_3:55068501-55068520 | Msa0126150:CDS | 45.0% |
| TGGAATACAGTTCTTGCTGC+AGG | + | chr1_3:55068806-55068825 | Msa0126150:three_prime_UTR | 45.0% | |
| !! | ATAATACTAATATTAATATA+TGG | + | chr1_3:55067613-55067632 | Msa0126150:intron | 5.0% |
| !! | TAATACTAATATTAATATAT+GGG | + | chr1_3:55067614-55067633 | Msa0126150:intron | 5.0% |
| !! | TTGTCTGGAGTAGGCACTGA+GGG | + | chr1_3:55066342-55066361 | Msa0126150:CDS | 50.0% |
| GCAGGTTCTTTAACTGCGCT+TGG | - | chr1_3:55066375-55066394 | None:intergenic | 50.0% | |
| CCAGACATCCAACCAAATGC+AGG | - | chr1_3:55066393-55066412 | None:intergenic | 50.0% | |
| CCTGCATTTGGTTGGATGTC+TGG | + | chr1_3:55066390-55066409 | Msa0126150:CDS | 50.0% | |
| GATTCCTTAACGAGTGCCCT+AGG | + | chr1_3:55066709-55066728 | Msa0126150:intron | 50.0% | |
| TTCCTTAACGAGTGCCCTAG+GGG | + | chr1_3:55066711-55066730 | Msa0126150:intron | 50.0% | |
| ! | TTTGTTAACGGGTGCCCCTA+GGG | - | chr1_3:55066728-55066747 | None:intergenic | 50.0% |
| !! | TTTTGTTAACGGGTGCCCCT+AGG | - | chr1_3:55066729-55066748 | None:intergenic | 50.0% |
| !! | AGGGGCACCCGTTAACAAAA+TGG | + | chr1_3:55066729-55066748 | Msa0126150:intron | 50.0% |
| ACCGCTGTTGCAAAACCACT+TGG | - | chr1_3:55066853-55066872 | None:intergenic | 50.0% | |
| GCAACAGCGGTTCTCATCAA+TGG | + | chr1_3:55066862-55066881 | Msa0126150:CDS | 50.0% | |
| GCAGAGACAAGTTCACAAGG+TGG | - | chr1_3:55067308-55067327 | None:intergenic | 50.0% | |
| GGAGCAGAGACAAGTTCACA+AGG | - | chr1_3:55067311-55067330 | None:intergenic | 50.0% | |
| GTGAACTTGTCTCTGCTCCT+TGG | + | chr1_3:55067312-55067331 | Msa0126150:CDS | 50.0% | |
| ! | CATAAGAGAGCACAGCTCCA+AGG | - | chr1_3:55067332-55067351 | None:intergenic | 50.0% |
| CTTGGAGCTGTGCTCTCTTA+TGG | + | chr1_3:55067330-55067349 | Msa0126150:CDS | 50.0% | |
| CCTTTACGCCGATCAACAAG+CGG | - | chr1_3:55067366-55067385 | None:intergenic | 50.0% | |
| GAGCATTCCAATGTGGATCG+GGG | + | chr1_3:55067742-55067761 | Msa0126150:CDS | 50.0% | |
| TTCAGCTGAGGAAACATGCG+CGG | - | chr1_3:55067812-55067831 | None:intergenic | 50.0% | |
| GCATTGCAGAATGCGAGAGA+TGG | - | chr1_3:55067869-55067888 | None:intergenic | 50.0% | |
| GTGTAGTGGCAGCACTTGTT+GGG | + | chr1_3:55067981-55068000 | Msa0126150:CDS | 50.0% | |
| CCATTGCAGTGCCAACTACT+TGG | - | chr1_3:55068108-55068127 | None:intergenic | 50.0% | |
| CCAAGTAGTTGGCACTGCAA+TGG | + | chr1_3:55068105-55068124 | Msa0126150:CDS | 50.0% | |
| !! | GGGGCTTTGAATTCTCCATG+TGG | - | chr1_3:55068190-55068209 | None:intergenic | 50.0% |
| GATGCCATTACCGATGGTCA+TGG | + | chr1_3:55068363-55068382 | Msa0126150:CDS | 50.0% | |
| ! | TCTGGACTAATTTGCGGGGA+AGG | + | chr1_3:55068505-55068524 | Msa0126150:CDS | 50.0% |
| ! | TAATTTGCGGGGAAGGACTG+TGG | + | chr1_3:55068512-55068531 | Msa0126150:CDS | 50.0% |
| GCTAGAGCAAGAATAGCAGC+AGG | - | chr1_3:55068544-55068563 | None:intergenic | 50.0% | |
| ! | TTCCAGCAAAGGCGCGGATA+CGG | - | chr1_3:55065313-55065332 | None:intergenic | 55.0% |
| GCTTTCTTCCAGCAAAGGCG+CGG | - | chr1_3:55065319-55065338 | None:intergenic | 55.0% | |
| GCGCTTGTGTGTGTTGTAGG+AGG | + | chr1_3:55066276-55066295 | Msa0126150:intron | 55.0% | |
| ! | GTTGTCTGGAGTAGGCACTG+AGG | + | chr1_3:55066341-55066360 | Msa0126150:CDS | 55.0% |
| ! | AAACAGTGCCCCAGGAGCAT+TGG | + | chr1_3:55066587-55066606 | Msa0126150:intron | 55.0% |
| ! | AGCACGACTTTTGTGGGAGC+AGG | + | chr1_3:55067270-55067289 | Msa0126150:CDS | 55.0% |
| ! | CCGCTTGTTGATCGGCGTAA+AGG | + | chr1_3:55067363-55067382 | Msa0126150:CDS | 55.0% |
| CATTCCAATGTGGATCGGGG+TGG | + | chr1_3:55067745-55067764 | Msa0126150:CDS | 55.0% | |
| TGGATCGGGGTGGTTGGATA+TGG | + | chr1_3:55067755-55067774 | Msa0126150:CDS | 55.0% | |
| TCAGCTGAGGAAACATGCGC+GGG | - | chr1_3:55067811-55067830 | None:intergenic | 55.0% | |
| GGTGTAGTGGCAGCACTTGT+TGG | + | chr1_3:55067980-55067999 | Msa0126150:CDS | 55.0% | |
| TGGCATACGAACATCGCCCT+GGG | - | chr1_3:55068088-55068107 | None:intergenic | 55.0% | |
| TTGGCATACGAACATCGCCC+TGG | - | chr1_3:55068089-55068108 | None:intergenic | 55.0% | |
| ACGGCCATGACCATCGGTAA+TGG | - | chr1_3:55068370-55068389 | None:intergenic | 55.0% | |
| AACGGTACGGCCATGACCAT+CGG | - | chr1_3:55068376-55068395 | None:intergenic | 55.0% | |
| !! | ATGGCCGTACCGTTTCTGGT+AGG | + | chr1_3:55068382-55068401 | Msa0126150:CDS | 55.0% |
| !! | TGGCCGTACCGTTTCTGGTA+GGG | + | chr1_3:55068383-55068402 | Msa0126150:CDS | 55.0% |
| TGCCCCTACCAGAAACGGTA+CGG | - | chr1_3:55068389-55068408 | None:intergenic | 55.0% | |
| ! | GCAAAGGCGCGGATACGGTA+TGG | - | chr1_3:55065308-55065327 | None:intergenic | 60.0% |
| TACCGTATCCGCGCCTTTGC+TGG | + | chr1_3:55065308-55065327 | Msa0126150:five_prime_UTR | 60.0% | |
| ! | TGCCCCTAGGGCACTCGTTA+AGG | - | chr1_3:55066716-55066735 | None:intergenic | 60.0% |
| CCAACCACCCCGATCCACAT+TGG | - | chr1_3:55067752-55067771 | None:intergenic | 60.0% | |
| CCAATGTGGATCGGGGTGGT+TGG | + | chr1_3:55067749-55067768 | Msa0126150:CDS | 60.0% | |
| ! | GTGGCAGCACTTGTTGGGTG+TGG | + | chr1_3:55067986-55068005 | Msa0126150:CDS | 60.0% |
| ATTGCACACGCACCTCTCCC+AGG | + | chr1_3:55068068-55068087 | Msa0126150:CDS | 60.0% | |
| TTGCACACGCACCTCTCCCA+GGG | + | chr1_3:55068069-55068088 | Msa0126150:CDS | 60.0% | |
| TACGAACATCGCCCTGGGAG+AGG | - | chr1_3:55068083-55068102 | None:intergenic | 60.0% | |
| GGTCATGGCCGTACCGTTTC+TGG | + | chr1_3:55068378-55068397 | Msa0126150:CDS | 60.0% | |
| !! | GGCCGTACCGTTTCTGGTAG+GGG | + | chr1_3:55068384-55068403 | Msa0126150:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 55065304 | 55068864 | 55065304 | ID=Msa0126150;Name=Msa0126150 |
| chr1_3 | mRNA | 55065304 | 55068864 | 55065304 | ID=Msa0126150-mRNA-1;Parent=Msa0126150;Name=Msa0126150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=121|1|1|1|0.83|0.71|7|258|680 |
| chr1_3 | exon | 55065304 | 55065404 | 55065304 | ID=Msa0126150-mRNA-1:exon:16996;Parent=Msa0126150-mRNA-1 |
| chr1_3 | exon | 55065514 | 55065933 | 55065514 | ID=Msa0126150-mRNA-1:exon:16997;Parent=Msa0126150-mRNA-1 |
| chr1_3 | exon | 55066295 | 55066467 | 55066295 | ID=Msa0126150-mRNA-1:exon:16998;Parent=Msa0126150-mRNA-1 |
| chr1_3 | exon | 55066820 | 55066914 | 55066820 | ID=Msa0126150-mRNA-1:exon:16999;Parent=Msa0126150-mRNA-1 |
| chr1_3 | exon | 55067019 | 55067153 | 55067019 | ID=Msa0126150-mRNA-1:exon:17000;Parent=Msa0126150-mRNA-1 |
| chr1_3 | exon | 55067254 | 55067558 | 55067254 | ID=Msa0126150-mRNA-1:exon:17001;Parent=Msa0126150-mRNA-1 |
| chr1_3 | exon | 55067672 | 55068864 | 55067672 | ID=Msa0126150-mRNA-1:exon:17002;Parent=Msa0126150-mRNA-1 |
| chr1_3 | five_prime_UTR | 55065304 | 55065404 | 55065304 | ID=Msa0126150-mRNA-1:five_prime_utr;Parent=Msa0126150-mRNA-1 |
| chr1_3 | five_prime_UTR | 55065514 | 55065533 | 55065514 | ID=Msa0126150-mRNA-1:five_prime_utr;Parent=Msa0126150-mRNA-1 |
| chr1_3 | CDS | 55065534 | 55065933 | 55065534 | ID=Msa0126150-mRNA-1:cds;Parent=Msa0126150-mRNA-1 |
| chr1_3 | CDS | 55066295 | 55066467 | 55066295 | ID=Msa0126150-mRNA-1:cds;Parent=Msa0126150-mRNA-1 |
| chr1_3 | CDS | 55066820 | 55066914 | 55066820 | ID=Msa0126150-mRNA-1:cds;Parent=Msa0126150-mRNA-1 |
| chr1_3 | CDS | 55067019 | 55067153 | 55067019 | ID=Msa0126150-mRNA-1:cds;Parent=Msa0126150-mRNA-1 |
| chr1_3 | CDS | 55067254 | 55067558 | 55067254 | ID=Msa0126150-mRNA-1:cds;Parent=Msa0126150-mRNA-1 |
| chr1_3 | CDS | 55067672 | 55068606 | 55067672 | ID=Msa0126150-mRNA-1:cds;Parent=Msa0126150-mRNA-1 |
| chr1_3 | three_prime_UTR | 55068607 | 55068864 | 55068607 | ID=Msa0126150-mRNA-1:three_prime_utr;Parent=Msa0126150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
