AlfalfaGEDB | Msa0171080

M. sativa cultivar zhongmu-4 / Msa0171080

KEGG: -
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0010035 GO:0010038 GO:0010039 GO:0010154 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944
PFAM: PF03169.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0171080	XP_013468866.1	99.118	680	6	0	1	680	1	680	0.0	1385

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0171080	sp\|Q6R3L0\|YSL1_ARATH	70.915	667	189	2	16	680	10	673	0.0	1001

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0171080	A0A072VND8	99.118	680	6	0	1	680	1	680	0.0	1385

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0031140	Msa0171080	0.995877	7.049750e-221	-8.615850e-47
Msa0078370	Msa0171080	0.826351	2.845601e-54	-8.615850e-47
Msa0126150	Msa0171080	0.833660	4.694825e-56	-8.615850e-47
Msa0171080	Msa0457370	0.807204	5.665068e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0171080	MtrunA17_Chr1g0189011	99.118	680	6	0	1	680	1	680	1385
Msa0171080	MtrunA17_Chr3g0127441	64.680	671	222	3	17	680	4	666	917
Msa0171080	MtrunA17_Chr1g0146651	62.556	673	243	5	11	680	6	672	874
Msa0171080	MtrunA17_Chr3g0119981	62.388	670	243	5	11	677	6	669	867
Msa0171080	MtrunA17_Chr1g0146591	62.236	662	245	4	23	680	15	675	864
Msa0171080	MtrunA17_Chr1g0146641	61.934	662	247	4	23	680	15	675	862
Msa0171080	MtrunA17_Chr7g0224611	53.521	639	288	5	46	677	37	673	726
Msa0171080	MtrunA17_Chr6g0481821	51.794	641	294	7	47	679	66	699	712
Msa0171080	MtrunA17_Chr5g0443261	51.274	667	312	7	22	679	7	669	704
Msa0171080	MtrunA17_Chr3g0109311	53.052	639	291	5	47	679	48	683	697

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0171080	AT4G24120.1	70.915	667	189	2	16	680	10	673	1001
Msa0171080	AT5G53550.3	64.318	667	232	4	16	680	9	671	907
Msa0171080	AT5G53550.1	64.318	667	232	4	16	680	9	671	907
Msa0171080	AT5G53550.6	64.318	667	232	4	16	680	9	671	907
Msa0171080	AT5G53550.5	64.318	667	232	4	16	680	9	671	907
Msa0171080	AT5G53550.2	64.318	667	232	4	16	680	9	671	907
Msa0171080	AT5G24380.1	63.514	666	231	4	20	680	5	663	900
Msa0171080	AT1G65730.1	52.353	680	299	9	19	679	1	674	730
Msa0171080	AT3G27020.1	51.343	670	311	6	20	677	4	670	721
Msa0171080	AT5G41000.1	51.940	670	314	4	18	680	2	670	720

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Find 167 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTACGGCCATGACCAT+TGG	0.552599	1_4:-55600758	None:intergenic
AACAGCACAAGTCTGAATAA+TGG	0.434716	1_4:-55598535	None:intergenic
AACCATCAACTCTGCTTTCT+TGG	0.226520	1_4:-55600855	None:intergenic
AAGAGATATTAATCAGAACA+TGG	0.647672	1_4:+55598248	Msa0171080:CDS
AAGATGCTTTCTTCCAGCAA+AGG	0.555540	1_4:-55597970	None:intergenic
AAGTAGTTGGCACTGCGATG+GGG	0.675338	1_4:+55600492	Msa0171080:CDS
AAGTATATACGCCATCACCA+AGG	0.720711	1_4:-55599858	None:intergenic
AAGTATGCCCCTACCAGAAA+AGG	0.489539	1_4:-55600776	None:intergenic
AAGTCCACTAAACATCAACA+TGG	0.666317	1_4:+55598197	Msa0171080:CDS
AATGTTCGACATTGCTTTAT+GGG	0.269475	1_4:-55601004	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCCATGTTGATGTTTAG+TGG	-	chr1_4:55598204-55598223	None:intergenic	30.0%
CTAAACATCAACATGGAATT+TGG	+	chr1_4:55598204-55598223	Msa0171080:CDS	30.0%
TTAATCAGAACATGGAAGAA+AGG	+	chr1_4:55598256-55598275	Msa0171080:CDS	30.0%
TAATCCAATCTGATGAACAT+TGG	+	chr1_4:55598301-55598320	Msa0171080:CDS	30.0%
ACAGAACACATAACAATAAG+AGG	+	chr1_4:55598324-55598343	Msa0171080:CDS	30.0%
TTGTTTGTGAGTATGATGAT+TGG	+	chr1_4:55598348-55598367	Msa0171080:CDS	30.0%
AGGAAGACATATATATTGTC+TGG	+	chr1_4:55598916-55598935	Msa0171080:CDS	30.0%
CAACAAAGCAAACAACAAAA+AGG	-	chr1_4:55599008-55599027	None:intergenic	30.0%
GAAGAGATGTTTATAGTACT+TGG	-	chr1_4:55599299-55599318	None:intergenic	30.0%
CTTAGAAGAAACTAACATGA+AGG	+	chr1_4:55599795-55599814	Msa0171080:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	55597953	55601243	55597953	ID=Msa0171080;Name=Msa0171080
chr1_4	mRNA	55597953	55601243	55597953	ID=Msa0171080-mRNA-1;Parent=Msa0171080;Name=Msa0171080-mRNA-1;_AED=0.07;_eAED=0.07;_QI=121\|1\|1\|1\|0.83\|0.71\|7\|252\|680
chr1_4	exon	55597953	55598053	55597953	ID=Msa0171080-mRNA-1:exon:16665;Parent=Msa0171080-mRNA-1
chr1_4	exon	55598163	55598582	55598163	ID=Msa0171080-mRNA-1:exon:16666;Parent=Msa0171080-mRNA-1
chr1_4	exon	55598884	55599056	55598884	ID=Msa0171080-mRNA-1:exon:16667;Parent=Msa0171080-mRNA-1
chr1_4	exon	55599205	55599299	55599205	ID=Msa0171080-mRNA-1:exon:16668;Parent=Msa0171080-mRNA-1
chr1_4	exon	55599410	55599544	55599410	ID=Msa0171080-mRNA-1:exon:16669;Parent=Msa0171080-mRNA-1
chr1_4	exon	55599645	55599949	55599645	ID=Msa0171080-mRNA-1:exon:16670;Parent=Msa0171080-mRNA-1
chr1_4	exon	55600057	55601243	55600057	ID=Msa0171080-mRNA-1:exon:16671;Parent=Msa0171080-mRNA-1
chr1_4	five_prime_UTR	55597953	55598053	55597953	ID=Msa0171080-mRNA-1:five_prime_utr;Parent=Msa0171080-mRNA-1
chr1_4	five_prime_UTR	55598163	55598182	55598163	ID=Msa0171080-mRNA-1:five_prime_utr;Parent=Msa0171080-mRNA-1
chr1_4	CDS	55598183	55598582	55598183	ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1
chr1_4	CDS	55598884	55599056	55598884	ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1
chr1_4	CDS	55599205	55599299	55599205	ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1
chr1_4	CDS	55599410	55599544	55599410	ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1
chr1_4	CDS	55599645	55599949	55599645	ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1
chr1_4	CDS	55600057	55600991	55600057	ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1
chr1_4	three_prime_UTR	55600992	55601243	55600992	ID=Msa0171080-mRNA-1:three_prime_utr;Parent=Msa0171080-mRNA-1

Gene Sequence

>Msa0171080

ATGATTTCTCCATCAAGTCCACTAAACATCAACATGGAATTTGGTGAGAAAAAAATGGAAATTGAAAGAGATATTAATCAGAACATGGAAGAAAGGTTGCCAGTTATAGGAGCTGAAGTAATCCAATCTGATGAACATTGGACAGAACACATAACAATAAGAGGATTGTTTGTGAGTATGATGATTGGAATAATATATAGTATAATAGCAATGAAGTTGAACCTTACAACAGGAATGGTTCCAAATTTGAATGTCTCTGCTGCTTTACTTGCTTTTGTGTTTGTAAGAAGTTGGACTAAAGTGCTTGAAAAAGCTGGCTTTGTTTCTAAGCCATTCACTCGCCAAGAAAATACCATTATTCAGACTTGTGCTGTTGCTTGCTATAGCATTGCTGTTAGTGGAGGATTTGCTTCTTACCTGTTGGGATTAAACAGGAAGACATATATATTGTCTGGAGTAGGGACTGAGGGTAACAACCCAAGCGCAGTTAAAGAACCTGCATTTGGTTGGATGTCTGGCTTCCTTTTTGTTGTTTGCTTTGTTGGACTCTTTGTCTTAATTCCACTCAGAAAGGTCTTGATAGTTGACCTCAATTTACCTTATCCAAGTGGTTTTGCAACAGCGGTTCTCATCAATGGTTTTCACACACAGGATGATAAAATGGCCAAGAAGCAAGTGCATGGGTTCATGAAGTATTTTTCGATCAGTTTCTTATGGGGTTTCTTTAAGTGGTTTTTCTCAGGCAAAGAAGACTGTGGATTTGAACAGTTTCCAACCTTTGGATTGCAAGCTTGGAAGAACACATTTTATTTCGATTTTAGCACGACTTTTGTGGGAGCAGGAATGATATGCTCCCACCTTGTGAACTTGTCTCTGCTCCTTGGAGCTGTGCTCTCTTATGGAGTTATGTATCCGCTCGTCGATCGGCGTAAAGGAAACTGGTTCCCTGAAAACTTAGAAGAAACTAACATGAAGGGTTTATATGGTTATAAGGTTTTTCTATCAATTGCTCTAATCCTTGGTGATGGCGTATATACTTTCACCAAGATTCTAGTTTCAACTGTCCTTGGCGTACATGAAAGAATCAAGAGCAAGAACCATAAAAAGGAATTAGCTGCTGATGATCTGCACGGGAATCCAAATGGTGACCTTAAACAAGCTCAAACATTCTTGAAGGAGAGCATTCCAATGTGGATCGGGGTAGTTGGATATGGCGTTTTCACAACTATTTCGATAATTATAATCCCGCGCATGTTTCCTCAGCTGAAATGGTACTATGTCATTGTTGCTTATATATTTGCTCCATCTCTTGCATTCTGCAACGCTTTTGGAGCAGGTCTCACTGATATAAACATGGCATATAACTACGGGAAAGTTGCACTATTTTTGCTGGCAACTGTGACAGGAAAAGAAAATGGTGTAGTGGCAGCACTTGTTGGTTGTGGTCTCATTAAATCCGTGATCTCGGTGTCTTGCAATCTGATGCAAGATTTCAAAACTGCTCATTGCACACGCACCTCTCCCAGGGCGATGTTCGTATGCCAAGTAGTTGGCACTGCGATGGGGTGTATATGCTGTCCTCTGAGCTTCTTCCTGTTCTACAAAGCATTTGATGTGGGAAACCCACATGGAGAATTCAAAGCCCCTTATGCACTAATTTACAGAAACATGGCAGTTATAGGGGTTCAAGGTTTCTCAGCACTACCTCGACATTGCTTGCAACTTTGTTTTGGGTTCTTTGGTTTTGCAATAGGAACAAACATGTTAAGAGATTTTTCACCCAAAAAGATTGGGAAATGGATGCCATTACCAATGGTCATGGCCGTACCTTTTCTGGTAGGGGCATACTTTGCAATCGATATGTGCACGGGTAGTTTGGTTGTGTTCGTGTTGCACAAGCTTAACTCCAAGAAAGCAGAGTTGATGGTTCCAGCAATTGCCTCCGGACTAATTTGCGGGGAAGGACTGTGGACTCTTCCTGCTGCTATTCTTGCTCTAGCCAAAATTAATCCGCCTATCTGCATGAAATTTGTTACTTCATAA

Protein sequence

>Msa0171080

MISPSSPLNINMEFGEKKMEIERDINQNMEERLPVIGAEVIQSDEHWTEHITIRGLFVSMMIGIIYSIIAMKLNLTTGMVPNLNVSAALLAFVFVRSWTKVLEKAGFVSKPFTRQENTIIQTCAVACYSIAVSGGFASYLLGLNRKTYILSGVGTEGNNPSAVKEPAFGWMSGFLFVVCFVGLFVLIPLRKVLIVDLNLPYPSGFATAVLINGFHTQDDKMAKKQVHGFMKYFSISFLWGFFKWFFSGKEDCGFEQFPTFGLQAWKNTFYFDFSTTFVGAGMICSHLVNLSLLLGAVLSYGVMYPLVDRRKGNWFPENLEETNMKGLYGYKVFLSIALILGDGVYTFTKILVSTVLGVHERIKSKNHKKELAADDLHGNPNGDLKQAQTFLKESIPMWIGVVGYGVFTTISIIIIPRMFPQLKWYYVIVAYIFAPSLAFCNAFGAGLTDINMAYNYGKVALFLLATVTGKENGVVAALVGCGLIKSVISVSCNLMQDFKTAHCTRTSPRAMFVCQVVGTAMGCICCPLSFFLFYKAFDVGNPHGEFKAPYALIYRNMAVIGVQGFSALPRHCLQLCFGFFGFAIGTNMLRDFSPKKIGKWMPLPMVMAVPFLVGAYFAIDMCTGSLVVFVLHKLNSKKAELMVPAIASGLICGEGLWTLPAAILALAKINPPICMKFVTS*