Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171080 | XP_013468866.1 | 99.118 | 680 | 6 | 0 | 1 | 680 | 1 | 680 | 0.0 | 1385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171080 | sp|Q6R3L0|YSL1_ARATH | 70.915 | 667 | 189 | 2 | 16 | 680 | 10 | 673 | 0.0 | 1001 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171080 | A0A072VND8 | 99.118 | 680 | 6 | 0 | 1 | 680 | 1 | 680 | 0.0 | 1385 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031140 | Msa0171080 | 0.995877 | 7.049750e-221 | -8.615850e-47 |
| Msa0078370 | Msa0171080 | 0.826351 | 2.845601e-54 | -8.615850e-47 |
| Msa0126150 | Msa0171080 | 0.833660 | 4.694825e-56 | -8.615850e-47 |
| Msa0171080 | Msa0457370 | 0.807204 | 5.665068e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171080 | MtrunA17_Chr1g0189011 | 99.118 | 680 | 6 | 0 | 1 | 680 | 1 | 680 | 0.0 | 1385 |
| Msa0171080 | MtrunA17_Chr3g0127441 | 64.680 | 671 | 222 | 3 | 17 | 680 | 4 | 666 | 0.0 | 917 |
| Msa0171080 | MtrunA17_Chr1g0146651 | 62.556 | 673 | 243 | 5 | 11 | 680 | 6 | 672 | 0.0 | 874 |
| Msa0171080 | MtrunA17_Chr3g0119981 | 62.388 | 670 | 243 | 5 | 11 | 677 | 6 | 669 | 0.0 | 867 |
| Msa0171080 | MtrunA17_Chr1g0146591 | 62.236 | 662 | 245 | 4 | 23 | 680 | 15 | 675 | 0.0 | 864 |
| Msa0171080 | MtrunA17_Chr1g0146641 | 61.934 | 662 | 247 | 4 | 23 | 680 | 15 | 675 | 0.0 | 862 |
| Msa0171080 | MtrunA17_Chr7g0224611 | 53.521 | 639 | 288 | 5 | 46 | 677 | 37 | 673 | 0.0 | 726 |
| Msa0171080 | MtrunA17_Chr6g0481821 | 51.794 | 641 | 294 | 7 | 47 | 679 | 66 | 699 | 0.0 | 712 |
| Msa0171080 | MtrunA17_Chr5g0443261 | 51.274 | 667 | 312 | 7 | 22 | 679 | 7 | 669 | 0.0 | 704 |
| Msa0171080 | MtrunA17_Chr3g0109311 | 53.052 | 639 | 291 | 5 | 47 | 679 | 48 | 683 | 0.0 | 697 |
| Msa0171080 | MtrunA17_Chr3g0109321 | 52.582 | 639 | 294 | 5 | 47 | 679 | 42 | 677 | 0.0 | 674 |
| Msa0171080 | MtrunA17_Chr1g0146601 | 63.265 | 490 | 179 | 1 | 192 | 680 | 261 | 750 | 0.0 | 671 |
| Msa0171080 | MtrunA17_Chr1g0146601 | 58.511 | 188 | 65 | 5 | 11 | 196 | 25 | 201 | 9.03e-55 | 200 |
| Msa0171080 | MtrunA17_Chr5g0443301 | 52.075 | 530 | 248 | 4 | 156 | 679 | 11 | 540 | 0.0 | 569 |
| Msa0171080 | MtrunA17_Chr5g0443291 | 50.435 | 115 | 53 | 2 | 22 | 133 | 7 | 120 | 9.53e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171080 | AT4G24120.1 | 70.915 | 667 | 189 | 2 | 16 | 680 | 10 | 673 | 0.0 | 1001 |
| Msa0171080 | AT5G53550.3 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 907 |
| Msa0171080 | AT5G53550.1 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 907 |
| Msa0171080 | AT5G53550.6 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 907 |
| Msa0171080 | AT5G53550.5 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 907 |
| Msa0171080 | AT5G53550.2 | 64.318 | 667 | 232 | 4 | 16 | 680 | 9 | 671 | 0.0 | 907 |
| Msa0171080 | AT5G24380.1 | 63.514 | 666 | 231 | 4 | 20 | 680 | 5 | 663 | 0.0 | 900 |
| Msa0171080 | AT1G65730.1 | 52.353 | 680 | 299 | 9 | 19 | 679 | 1 | 674 | 0.0 | 730 |
| Msa0171080 | AT3G27020.1 | 51.343 | 670 | 311 | 6 | 20 | 677 | 4 | 670 | 0.0 | 721 |
| Msa0171080 | AT5G41000.1 | 51.940 | 670 | 314 | 4 | 18 | 680 | 2 | 670 | 0.0 | 720 |
| Msa0171080 | AT5G53550.4 | 64.579 | 511 | 178 | 2 | 171 | 680 | 1 | 509 | 0.0 | 711 |
| Msa0171080 | AT1G48370.1 | 52.207 | 657 | 293 | 7 | 40 | 680 | 59 | 710 | 0.0 | 686 |
| Msa0171080 | AT5G41000.2 | 50.526 | 665 | 306 | 4 | 18 | 680 | 2 | 645 | 0.0 | 682 |
| Msa0171080 | AT3G17650.1 | 50.533 | 657 | 305 | 7 | 39 | 680 | 49 | 700 | 0.0 | 676 |
| Msa0171080 | AT3G17650.2 | 50.533 | 657 | 305 | 7 | 39 | 680 | 49 | 700 | 0.0 | 676 |
| Msa0171080 | AT1G48370.2 | 52.505 | 539 | 242 | 5 | 156 | 680 | 9 | 547 | 0.0 | 570 |
| Msa0171080 | AT5G41000.3 | 51.717 | 495 | 231 | 4 | 193 | 680 | 1 | 494 | 0.0 | 534 |
| Msa0171080 | AT5G45450.1 | 48.558 | 208 | 100 | 2 | 474 | 680 | 1 | 202 | 8.58e-66 | 216 |
Find 167 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGTTCGACATTGCTTTA+TGG | 0.147135 | 1_4:-55601005 | None:intergenic |
| CTTGCATTCTGCAACGCTTT+TGG | 0.182277 | 1_4:+55600257 | Msa0171080:CDS |
| CATTGCTTGCAACTTTGTTT+TGG | 0.185014 | 1_4:+55600659 | Msa0171080:CDS |
| AGAATGTTTGAGCTTGTTTA+AGG | 0.190142 | 1_4:-55600097 | None:intergenic |
| TGACAAATAACACAGGTTTC+TGG | 0.210672 | 1_4:+55601164 | Msa0171080:three_prime_UTR |
| AACCATCAACTCTGCTTTCT+TGG | 0.226520 | 1_4:-55600855 | None:intergenic |
| CTTGGAGCTGTGCTCTCTTA+TGG | 0.235520 | 1_4:+55599721 | Msa0171080:CDS |
| GCAGATAGGCGGATTAATTT+TGG | 0.237022 | 1_4:-55600948 | None:intergenic |
| CAAGAGCAAGAACCATAAAA+AGG | 0.240574 | 1_4:+55599927 | Msa0171080:CDS |
| CTAAACATCAACATGGAATT+TGG | 0.250698 | 1_4:+55598204 | Msa0171080:CDS |
| GCAGCAGAGACATTCAAATT+TGG | 0.267639 | 1_4:-55598423 | None:intergenic |
| AATGTTCGACATTGCTTTAT+GGG | 0.269475 | 1_4:-55601004 | None:intergenic |
| GAAGGGTTTATATGGTTATA+AGG | 0.272710 | 1_4:+55599813 | Msa0171080:CDS |
| CCTGCATTTGGTTGGATGTC+TGG | 0.275545 | 1_4:+55598979 | Msa0171080:CDS |
| TACCGTATCCGCGCCTTTGC+TGG | 0.281051 | 1_4:+55597957 | Msa0171080:five_prime_UTR |
| AATTCCATGTTGATGTTTAG+TGG | 0.299995 | 1_4:-55598201 | None:intergenic |
| ACTAACATGAAGGGTTTATA+TGG | 0.306840 | 1_4:+55599805 | Msa0171080:CDS |
| ACAGAAACATGGCAGTTATA+GGG | 0.308924 | 1_4:+55600609 | Msa0171080:CDS |
| TCACACACAGGATGATAAAA+TGG | 0.314433 | 1_4:+55599273 | Msa0171080:CDS |
| TTTGAACAGTTTCCAACCTT+TGG | 0.315680 | 1_4:+55599501 | Msa0171080:CDS |
| CTGTCCAATGTTCATCAGAT+TGG | 0.320759 | 1_4:-55598305 | None:intergenic |
| TACAGAAACATGGCAGTTAT+AGG | 0.321915 | 1_4:+55600608 | Msa0171080:CDS |
| CAACAAAGCAAACAACAAAA+AGG | 0.327369 | 1_4:-55599005 | None:intergenic |
| CTCCAAGAAAGCAGAGTTGA+TGG | 0.329189 | 1_4:+55600853 | Msa0171080:CDS |
| CAACCTTTGGATTGCAAGCT+TGG | 0.329374 | 1_4:+55599514 | Msa0171080:CDS |
| CGATATGTGCACGGGTAGTT+TGG | 0.340781 | 1_4:+55600805 | Msa0171080:CDS |
| TGCTATAGCATTGCTGTTAG+TGG | 0.359669 | 1_4:+55598561 | Msa0171080:CDS |
| TTTCTGTAAATTAGTGCATA+AGG | 0.363611 | 1_4:-55600593 | None:intergenic |
| TTGCCTCCGGACTAATTTGC+GGG | 0.369228 | 1_4:+55600885 | Msa0171080:CDS |
| GAAGAAAGGTTGCCAGTTAT+AGG | 0.369530 | 1_4:+55598270 | Msa0171080:CDS |
| ATTACTTCAGCTCCTATAAC+TGG | 0.372038 | 1_4:-55598282 | None:intergenic |
| TTGGAACCATTCCTGTTGTA+AGG | 0.381075 | 1_4:-55598404 | None:intergenic |
| TCGACATTGCTTTATGGGTT+GGG | 0.382065 | 1_4:-55600999 | None:intergenic |
| GTATTAATGCCATTAGTATA+TGG | 0.383869 | 1_4:-55601118 | None:intergenic |
| CATCAAATGCTTTGTAGAAC+AGG | 0.389070 | 1_4:-55600541 | None:intergenic |
| TGGATCGGGGTAGTTGGATA+TGG | 0.389113 | 1_4:+55600140 | Msa0171080:CDS |
| GGATTTGCTTCTTACCTGTT+GGG | 0.389382 | 1_4:+55598886 | Msa0171080:CDS |
| TTCGACATTGCTTTATGGGT+TGG | 0.392532 | 1_4:-55601000 | None:intergenic |
| GTGAACTTGTCTCTGCTCCT+TGG | 0.393687 | 1_4:+55599703 | Msa0171080:CDS |
| GCATGTTTCCTCAGCTGAAA+TGG | 0.394853 | 1_4:+55600198 | Msa0171080:CDS |
| CTATCAATTGCTCTAATCCT+TGG | 0.398456 | 1_4:+55599841 | Msa0171080:CDS |
| ATTAGTCCGGAGGCAATTGC+TGG | 0.399478 | 1_4:-55600878 | None:intergenic |
| TCTTATGGGGTTTCTTTAAG+TGG | 0.406690 | 1_4:+55599451 | Msa0171080:CDS |
| GCAACAGCGGTTCTCATCAA+TGG | 0.410553 | 1_4:+55599247 | Msa0171080:CDS |
| AGAGCATTCCAATGTGGATC+GGG | 0.417671 | 1_4:+55600126 | Msa0171080:CDS |
| ACAAGCTCAAACATTCTTGA+AGG | 0.418237 | 1_4:+55600103 | Msa0171080:CDS |
| TTGATGTTTAGTGGACTTGA+TGG | 0.419351 | 1_4:-55598192 | None:intergenic |
| GCAGTTAAAGAACCTGCATT+TGG | 0.420611 | 1_4:+55598967 | Msa0171080:CDS |
| CTTACCTGTTGGGATTAAAC+AGG | 0.421340 | 1_4:+55598896 | Msa0171080:CDS |
| CAGGTTCTTTAACTGCGCTT+GGG | 0.424884 | 1_4:-55598960 | None:intergenic |
| TTCTGTAAATTAGTGCATAA+GGG | 0.426176 | 1_4:-55600592 | None:intergenic |
| GCAGGTTCTTTAACTGCGCT+TGG | 0.426747 | 1_4:-55598961 | None:intergenic |
| AGGATTTGCTTCTTACCTGT+TGG | 0.428296 | 1_4:+55598885 | Msa0171080:CDS |
| AACAGCACAAGTCTGAATAA+TGG | 0.434716 | 1_4:-55598535 | None:intergenic |
| GACAGTTGAAACTAGAATCT+TGG | 0.437254 | 1_4:-55599884 | None:intergenic |
| TGGAATACAGTTCTTGCTGC+AGG | 0.438378 | 1_4:+55601184 | Msa0171080:three_prime_UTR |
| TCTTCCTGTTTAATCCCAAC+AGG | 0.440272 | 1_4:-55598900 | None:intergenic |
| TCGATCGGCGTAAAGGAAAC+TGG | 0.440797 | 1_4:+55599761 | Msa0171080:CDS |
| GCTTGTTTAAGGTCACCATT+TGG | 0.442681 | 1_4:-55600086 | None:intergenic |
| ATGGCAGTTATAGGGGTTCA+AGG | 0.442747 | 1_4:+55600617 | Msa0171080:CDS |
| TTCCAGCAAAGGCGCGGATA+CGG | 0.448707 | 1_4:-55597959 | None:intergenic |
| ACAGAACACATAACAATAAG+AGG | 0.457854 | 1_4:+55598324 | Msa0171080:CDS |
| CCATCGCAGTGCCAACTACT+TGG | 0.458126 | 1_4:-55600490 | None:intergenic |
| AGGAAGACATATATATTGTC+TGG | 0.461260 | 1_4:+55598916 | Msa0171080:CDS |
| ATTCTAGTTTCAACTGTCCT+TGG | 0.462241 | 1_4:+55599889 | Msa0171080:CDS |
| ATTGCACACGCACCTCTCCC+AGG | 0.462537 | 1_4:+55600453 | Msa0171080:CDS |
| GGTGTAGTGGCAGCACTTGT+TGG | 0.470788 | 1_4:+55600365 | Msa0171080:CDS |
| CCGCTCGTCGATCGGCGTAA+AGG | 0.473893 | 1_4:+55599754 | Msa0171080:CDS |
| GTTGCAAAACCACTTGGATA+AGG | 0.475631 | 1_4:-55599229 | None:intergenic |
| TTGGCATACGAACATCGCCC+TGG | 0.477283 | 1_4:-55600471 | None:intergenic |
| TCCTTCCCCGCAAATTAGTC+CGG | 0.483208 | 1_4:-55600891 | None:intergenic |
| TGTCTTAATTCCACTCAGAA+AGG | 0.483712 | 1_4:+55599035 | Msa0171080:CDS |
| CCAATGTGGATCGGGGTAGT+TGG | 0.486909 | 1_4:+55600134 | Msa0171080:CDS |
| AAGTATGCCCCTACCAGAAA+AGG | 0.489539 | 1_4:-55600776 | None:intergenic |
| CAAGCTTGCAATCCAAAGGT+TGG | 0.490018 | 1_4:-55599513 | None:intergenic |
| TCCGGACTAATTTGCGGGGA+AGG | 0.492676 | 1_4:+55600890 | Msa0171080:CDS |
| GTGGCAGCACTTGTTGGTTG+TGG | 0.492912 | 1_4:+55600371 | Msa0171080:CDS |
| ACTGTGACAGGAAAAGAAAA+TGG | 0.493538 | 1_4:+55600344 | Msa0171080:CDS |
| ATAAACATGGCATATAACTA+CGG | 0.499123 | 1_4:+55600296 | Msa0171080:CDS |
| ATGAAGTTGAACCTTACAAC+AGG | 0.502367 | 1_4:+55598393 | Msa0171080:CDS |
| CAGAAACATGGCAGTTATAG+GGG | 0.504777 | 1_4:+55600610 | Msa0171080:CDS |
| TACGAACATCGCCCTGGGAG+AGG | 0.508872 | 1_4:-55600465 | None:intergenic |
| TTGTTTGTGAGTATGATGAT+TGG | 0.510508 | 1_4:+55598348 | Msa0171080:CDS |
| CAAGTAGTTGGCACTGCGAT+GGG | 0.512978 | 1_4:+55600491 | Msa0171080:CDS |
| ATGGTTCCAGCAATTGCCTC+CGG | 0.514863 | 1_4:+55600872 | Msa0171080:CDS |
| CCAAGTAGTTGGCACTGCGA+TGG | 0.514917 | 1_4:+55600490 | Msa0171080:CDS |
| GAGAAAGAACAAATAAACTA+AGG | 0.515796 | 1_4:+55598032 | Msa0171080:five_prime_UTR |
| CTTCCAAGCTTGCAATCCAA+AGG | 0.518270 | 1_4:-55599517 | None:intergenic |
| AGAACATTACCATATACTAA+TGG | 0.518616 | 1_4:+55601109 | Msa0171080:three_prime_UTR |
| TTAATCAGAACATGGAAGAA+AGG | 0.519391 | 1_4:+55598256 | Msa0171080:CDS |
| GCAAAGGCGCGGATACGGTA+TGG | 0.521818 | 1_4:-55597954 | None:intergenic |
| ATTGCCTCCGGACTAATTTG+CGG | 0.522806 | 1_4:+55600884 | Msa0171080:CDS |
| TTAAAGAACCTGCATTTGGT+TGG | 0.523266 | 1_4:+55598971 | Msa0171080:CDS |
| CATATATATTGTCTGGAGTA+GGG | 0.531337 | 1_4:+55598923 | Msa0171080:CDS |
| CTTAGAAGAAACTAACATGA+AGG | 0.531827 | 1_4:+55599795 | Msa0171080:CDS |
| ACCGCTGTTGCAAAACCACT+TGG | 0.532997 | 1_4:-55599235 | None:intergenic |
| TTATGTATCCGCTCGTCGAT+CGG | 0.538651 | 1_4:+55599746 | Msa0171080:CDS |
| TCTCATTAAATCCGTGATCT+CGG | 0.542009 | 1_4:+55600394 | Msa0171080:CDS |
| ACATATATATTGTCTGGAGT+AGG | 0.542660 | 1_4:+55598922 | Msa0171080:CDS |
| TATTGCAGGAAGCAAGTGCA+TGG | 0.546997 | 1_4:+55599402 | Msa0171080:intron |
| TCTGTAAATTAGTGCATAAG+GGG | 0.547725 | 1_4:-55600591 | None:intergenic |
| TAAACATGGCATATAACTAC+GGG | 0.549716 | 1_4:+55600297 | Msa0171080:CDS |
| AAAGGTACGGCCATGACCAT+TGG | 0.552599 | 1_4:-55600758 | None:intergenic |
| CCAACTACCCCGATCCACAT+TGG | 0.553126 | 1_4:-55600134 | None:intergenic |
| TAATCCAATCTGATGAACAT+TGG | 0.553322 | 1_4:+55598301 | Msa0171080:CDS |
| TTCTACAAAGCATTTGATGT+GGG | 0.553517 | 1_4:+55600545 | Msa0171080:CDS |
| AAGATGCTTTCTTCCAGCAA+AGG | 0.555540 | 1_4:-55597970 | None:intergenic |
| GGGCTTTGAATTCTCCATGT+GGG | 0.558789 | 1_4:-55600571 | None:intergenic |
| GTAACAAATTTCATGCAGAT+AGG | 0.560658 | 1_4:-55600962 | None:intergenic |
| CCAGACATCCAACCAAATGC+AGG | 0.560714 | 1_4:-55598979 | None:intergenic |
| ACGGCCATGACCATTGGTAA+TGG | 0.563697 | 1_4:-55600752 | None:intergenic |
| GAGAGCATTCCAATGTGGAT+CGG | 0.564131 | 1_4:+55600125 | Msa0171080:CDS |
| TTGTCTGGAGTAGGGACTGA+GGG | 0.566557 | 1_4:+55598931 | Msa0171080:CDS |
| CTCAATTTACCTTATCCAAG+TGG | 0.567851 | 1_4:+55599220 | Msa0171080:CDS |
| AGCAATGTCGAACATTAGCT+AGG | 0.568216 | 1_4:+55601011 | Msa0171080:three_prime_UTR |
| TTAGAAGAAACTAACATGAA+GGG | 0.576320 | 1_4:+55599796 | Msa0171080:CDS |
| GTTGAACCTTACAACAGGAA+TGG | 0.576347 | 1_4:+55598398 | Msa0171080:CDS |
| CACTTGGATAAGGTAAATTG+AGG | 0.578530 | 1_4:-55599219 | None:intergenic |
| GCTAGAGCAAGAATAGCAGC+AGG | 0.581993 | 1_4:-55600926 | None:intergenic |
| CTTTGCAATCGATATGTGCA+CGG | 0.585680 | 1_4:+55600796 | Msa0171080:CDS |
| CAGAGACAAGTTCACAAGGT+GGG | 0.586027 | 1_4:-55599695 | None:intergenic |
| TGATTCTTTCATGTACGCCA+AGG | 0.587279 | 1_4:-55599906 | None:intergenic |
| TGGCATACGAACATCGCCCT+GGG | 0.590951 | 1_4:-55600470 | None:intergenic |
| TTGCACACGCACCTCTCCCA+GGG | 0.591980 | 1_4:+55600454 | Msa0171080:CDS |
| CCTTTACGCCGATCGACGAG+CGG | 0.592216 | 1_4:-55599754 | None:intergenic |
| GCAATGTCGAACATTAGCTA+GGG | 0.594077 | 1_4:+55601012 | Msa0171080:three_prime_UTR |
| GATGCCATTACCAATGGTCA+TGG | 0.594138 | 1_4:+55600748 | Msa0171080:CDS |
| GCGTTGCAGAATGCAAGAGA+TGG | 0.596604 | 1_4:-55600251 | None:intergenic |
| GTTCTACAAAGCATTTGATG+TGG | 0.597381 | 1_4:+55600544 | Msa0171080:CDS |
| ATTGCAAGACACCGAGATCA+CGG | 0.597470 | 1_4:-55600405 | None:intergenic |
| TGCCCCTACCAGAAAAGGTA+CGG | 0.600276 | 1_4:-55600771 | None:intergenic |
| CATAAGAGAGCACAGCTCCA+AGG | 0.601707 | 1_4:-55599720 | None:intergenic |
| GATCTGCACGGGAATCCAAA+TGG | 0.602302 | 1_4:+55600071 | Msa0171080:CDS |
| ACAAATTTCATGCAGATAGG+CGG | 0.603089 | 1_4:-55600959 | None:intergenic |
| TCAGCTGAGGAAACATGCGC+GGG | 0.603914 | 1_4:-55600193 | None:intergenic |
| TTAGCTGCTGATGATCTGCA+CGG | 0.611628 | 1_4:+55600059 | Msa0171080:CDS |
| ATTGCTCTAATCCTTGGTGA+TGG | 0.613675 | 1_4:+55599847 | Msa0171080:CDS |
| TAGCTGCTGATGATCTGCAC+GGG | 0.614301 | 1_4:+55600060 | Msa0171080:CDS |
| GCTTTCTTCCAGCAAAGGCG+CGG | 0.616342 | 1_4:-55597965 | None:intergenic |
| AGGAAAAGAAAATGGTGTAG+TGG | 0.618420 | 1_4:+55600352 | Msa0171080:CDS |
| ATGTTCGTATGCCAAGTAGT+TGG | 0.622489 | 1_4:+55600479 | Msa0171080:CDS |
| TGCACTAATTTACAGAAACA+TGG | 0.622591 | 1_4:+55600598 | Msa0171080:CDS |
| TTCAGCTGAGGAAACATGCG+CGG | 0.629166 | 1_4:-55600194 | None:intergenic |
| GAAATGGATGCCATTACCAA+TGG | 0.632319 | 1_4:+55600742 | Msa0171080:CDS |
| TTTGCAATCGATATGTGCAC+GGG | 0.633896 | 1_4:+55600797 | Msa0171080:CDS |
| TTTGATGTGGGAAACCCACA+TGG | 0.634234 | 1_4:+55600557 | Msa0171080:CDS |
| TAATTTGCGGGGAAGGACTG+TGG | 0.634672 | 1_4:+55600897 | Msa0171080:CDS |
| ACATAGTACCATTTCAGCTG+AGG | 0.638500 | 1_4:-55600206 | None:intergenic |
| TTCTCAGGCAAAGAAGACTG+TGG | 0.640879 | 1_4:+55599477 | Msa0171080:CDS |
| AAGAGATATTAATCAGAACA+TGG | 0.647672 | 1_4:+55598248 | Msa0171080:CDS |
| TTCCCCGCAAATTAGTCCGG+AGG | 0.648987 | 1_4:-55600888 | None:intergenic |
| ATTGCAGGAAGCAAGTGCAT+GGG | 0.652006 | 1_4:+55599403 | Msa0171080:intron |
| CAAAGTTGCAAGCAATGTCG+AGG | 0.653267 | 1_4:-55600653 | None:intergenic |
| GGAGCAGAGACAAGTTCACA+AGG | 0.657179 | 1_4:-55599699 | None:intergenic |
| ATTGTCTGGAGTAGGGACTG+AGG | 0.658990 | 1_4:+55598930 | Msa0171080:CDS |
| TGCCTCCGGACTAATTTGCG+GGG | 0.659474 | 1_4:+55600886 | Msa0171080:CDS |
| AAGTCCACTAAACATCAACA+TGG | 0.666317 | 1_4:+55598197 | Msa0171080:CDS |
| ATACTACAAACCTTTCTGAG+TGG | 0.669560 | 1_4:-55599045 | None:intergenic |
| GAGCATTCCAATGTGGATCG+GGG | 0.670545 | 1_4:+55600127 | Msa0171080:CDS |
| AAGTAGTTGGCACTGCGATG+GGG | 0.675338 | 1_4:+55600492 | Msa0171080:CDS |
| AGAATTCTGACAAATAACAC+AGG | 0.675707 | 1_4:+55601157 | Msa0171080:three_prime_UTR |
| GGGGCTTTGAATTCTCCATG+TGG | 0.676243 | 1_4:-55600572 | None:intergenic |
| TGAAGGAGAGCATTCCAATG+TGG | 0.677015 | 1_4:+55600120 | Msa0171080:CDS |
| TAGAACAGGAAGAAGCTCAG+AGG | 0.680521 | 1_4:-55600527 | None:intergenic |
| AGGTCTCACTGATATAAACA+TGG | 0.684403 | 1_4:+55600283 | Msa0171080:CDS |
| GCAGAGACAAGTTCACAAGG+TGG | 0.689164 | 1_4:-55599696 | None:intergenic |
| AAGTATATACGCCATCACCA+AGG | 0.720711 | 1_4:-55599858 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTAATTAATATTAGATAT+TGG | + | chr1_4:55599126-55599145 | Msa0171080:intron | 10.0% |
| !! | AATTTGGAAAAAAAATATAA+AGG | + | chr1_4:55599348-55599367 | Msa0171080:intron | 10.0% |
| !! | TGACAAAAAAAAAAAAAAAA+AGG | - | chr1_4:55601040-55601059 | None:intergenic | 10.0% |
| !! | GAAAATAATAAATATGTAGT+AGG | - | chr1_4:55598600-55598619 | None:intergenic | 15.0% |
| !! | TAATATTAATTAACTGTAGA+TGG | - | chr1_4:55599121-55599140 | None:intergenic | 15.0% |
| !! | TGCAATATTATAATATAAGA+TGG | - | chr1_4:55599389-55599408 | None:intergenic | 15.0% |
| !! | ATCTTATATTATAATATTGC+AGG | + | chr1_4:55599388-55599407 | Msa0171080:intron | 15.0% |
| !!! | TTAATTAGACACTGATTTTT+TGG | - | chr1_4:55599163-55599182 | None:intergenic | 20.0% |
| !! | TCAAGCATATTATATATAGT+TGG | + | chr1_4:55599558-55599577 | Msa0171080:intron | 20.0% |
| !! | CATATTATATATAGTTGGTT+TGG | + | chr1_4:55599563-55599582 | Msa0171080:intron | 20.0% |
| !! | TCGTTACTAATCTTATTATT+TGG | + | chr1_4:55599608-55599627 | Msa0171080:intron | 20.0% |
| !! | CGTTACTAATCTTATTATTT+GGG | + | chr1_4:55599609-55599628 | Msa0171080:intron | 20.0% |
| !! | TGAAAAATTCAAAAGAAGAA+AGG | - | chr1_4:55599975-55599994 | None:intergenic | 20.0% |
| ! | GAGAAAGAACAAATAAACTA+AGG | + | chr1_4:55598032-55598051 | Msa0171080:five_prime_UTR | 25.0% |
| ! | TAATATAGTAAAGTTGTGAC+AGG | + | chr1_4:55598141-55598160 | Msa0171080:intron | 25.0% |
| ! | AAGAGATATTAATCAGAACA+TGG | + | chr1_4:55598248-55598267 | Msa0171080:CDS | 25.0% |
| !! | TCTGAATAATGGTATTTTCT+TGG | - | chr1_4:55598527-55598546 | None:intergenic | 25.0% |
| ! | AGGTTTGTAGTATAATACTT+TGG | + | chr1_4:55599055-55599074 | Msa0171080:intron | 25.0% |
| !!! | AACTTTTGTTTGTTGCAATT+TGG | + | chr1_4:55599332-55599351 | Msa0171080:intron | 25.0% |
| !!! | ATTTTTCGATCAGTTTCTTA+TGG | + | chr1_4:55599436-55599455 | Msa0171080:CDS | 25.0% |
| !!! | TTTTTCGATCAGTTTCTTAT+GGG | + | chr1_4:55599437-55599456 | Msa0171080:CDS | 25.0% |
| !! | TAGTTTCTTCTAAGTTTTCA+GGG | - | chr1_4:55599789-55599808 | None:intergenic | 25.0% |
| !! | TTAGTTTCTTCTAAGTTTTC+AGG | - | chr1_4:55599790-55599809 | None:intergenic | 25.0% |
| ! | TTAGAAGAAACTAACATGAA+GGG | + | chr1_4:55599796-55599815 | Msa0171080:CDS | 25.0% |
| ! | ATAAACATGGCATATAACTA+CGG | + | chr1_4:55600296-55600315 | Msa0171080:CDS | 25.0% |
| ! | TTCTGTAAATTAGTGCATAA+GGG | - | chr1_4:55600595-55600614 | None:intergenic | 25.0% |
| ! | TTTCTGTAAATTAGTGCATA+AGG | - | chr1_4:55600596-55600615 | None:intergenic | 25.0% |
| !! | ATTTTTCACCCAAAAAGATT+GGG | + | chr1_4:55600720-55600739 | Msa0171080:CDS | 25.0% |
| !!! | TTTTTTTTTGTCACTGTTTG+TGG | + | chr1_4:55601047-55601066 | Msa0171080:three_prime_UTR | 25.0% |
| ! | AGAACATTACCATATACTAA+TGG | + | chr1_4:55601109-55601128 | Msa0171080:three_prime_UTR | 25.0% |
| ! | GTATTAATGCCATTAGTATA+TGG | - | chr1_4:55601121-55601140 | None:intergenic | 25.0% |
| !!! | TTTTTCTGTTAGTTTTGTTG+GGG | - | chr1_4:55601222-55601241 | None:intergenic | 25.0% |
| !!! | GTTTTTCTGTTAGTTTTGTT+GGG | - | chr1_4:55601223-55601242 | None:intergenic | 25.0% |
| ! | ATAGTTGATACATGAGACAA+AGG | - | chr1_4:55598114-55598133 | None:intergenic | 30.0% |
| AATTCCATGTTGATGTTTAG+TGG | - | chr1_4:55598204-55598223 | None:intergenic | 30.0% | |
| CTAAACATCAACATGGAATT+TGG | + | chr1_4:55598204-55598223 | Msa0171080:CDS | 30.0% | |
| ! | GGAATTTGGTGAGAAAAAAA+TGG | + | chr1_4:55598218-55598237 | Msa0171080:CDS | 30.0% |
| TTAATCAGAACATGGAAGAA+AGG | + | chr1_4:55598256-55598275 | Msa0171080:CDS | 30.0% | |
| TAATCCAATCTGATGAACAT+TGG | + | chr1_4:55598301-55598320 | Msa0171080:CDS | 30.0% | |
| ACAGAACACATAACAATAAG+AGG | + | chr1_4:55598324-55598343 | Msa0171080:CDS | 30.0% | |
| TTGTTTGTGAGTATGATGAT+TGG | + | chr1_4:55598348-55598367 | Msa0171080:CDS | 30.0% | |
| ! | CTTTTGTGTTTGTAAGAAGT+TGG | + | chr1_4:55598454-55598473 | Msa0171080:CDS | 30.0% |
| AGGAAGACATATATATTGTC+TGG | + | chr1_4:55598916-55598935 | Msa0171080:CDS | 30.0% | |
| ! | ACATATATATTGTCTGGAGT+AGG | + | chr1_4:55598922-55598941 | Msa0171080:CDS | 30.0% |
| ! | CATATATATTGTCTGGAGTA+GGG | + | chr1_4:55598923-55598942 | Msa0171080:CDS | 30.0% |
| CAACAAAGCAAACAACAAAA+AGG | - | chr1_4:55599008-55599027 | None:intergenic | 30.0% | |
| !!! | CTTTTTGTTGTTTGCTTTGT+TGG | + | chr1_4:55599006-55599025 | Msa0171080:CDS | 30.0% |
| GAAGAGATGTTTATAGTACT+TGG | - | chr1_4:55599299-55599318 | None:intergenic | 30.0% | |
| ! | TTTTCGATCAGTTTCTTATG+GGG | + | chr1_4:55599438-55599457 | Msa0171080:CDS | 30.0% |
| ! | TTCTTTAAGTGGTTTTTCTC+AGG | + | chr1_4:55599462-55599481 | Msa0171080:CDS | 30.0% |
| CTTAGAAGAAACTAACATGA+AGG | + | chr1_4:55599795-55599814 | Msa0171080:CDS | 30.0% | |
| ACTAACATGAAGGGTTTATA+TGG | + | chr1_4:55599805-55599824 | Msa0171080:CDS | 30.0% | |
| GAAGGGTTTATATGGTTATA+AGG | + | chr1_4:55599813-55599832 | Msa0171080:CDS | 30.0% | |
| AAGAGCAAGAACCATAAAAA+GGG | + | chr1_4:55599928-55599947 | Msa0171080:CDS | 30.0% | |
| ! | TACGTTCTTTACCCTTTTTA+TGG | - | chr1_4:55599942-55599961 | None:intergenic | 30.0% |
| ! | AGAATGTTTGAGCTTGTTTA+AGG | - | chr1_4:55600100-55600119 | None:intergenic | 30.0% |
| TAAACATGGCATATAACTAC+GGG | + | chr1_4:55600297-55600316 | Msa0171080:CDS | 30.0% | |
| ! | TTCTACAAAGCATTTGATGT+GGG | + | chr1_4:55600545-55600564 | Msa0171080:CDS | 30.0% |
| TCTGTAAATTAGTGCATAAG+GGG | - | chr1_4:55600594-55600613 | None:intergenic | 30.0% | |
| TGCACTAATTTACAGAAACA+TGG | + | chr1_4:55600598-55600617 | Msa0171080:CDS | 30.0% | |
| !!! | ATTGCTTGCAACTTTGTTTT+GGG | + | chr1_4:55600660-55600679 | Msa0171080:CDS | 30.0% |
| ! | GATTTTTCACCCAAAAAGAT+TGG | + | chr1_4:55600719-55600738 | Msa0171080:CDS | 30.0% |
| ! | ATCCATTTCCCAATCTTTTT+GGG | - | chr1_4:55600731-55600750 | None:intergenic | 30.0% |
| GTAACAAATTTCATGCAGAT+AGG | - | chr1_4:55600965-55600984 | None:intergenic | 30.0% | |
| AATGTTCGACATTGCTTTAT+GGG | - | chr1_4:55601007-55601026 | None:intergenic | 30.0% | |
| TAATGTTCGACATTGCTTTA+TGG | - | chr1_4:55601008-55601027 | None:intergenic | 30.0% | |
| AGAATTCTGACAAATAACAC+AGG | + | chr1_4:55601157-55601176 | Msa0171080:three_prime_UTR | 30.0% | |
| !!! | TTTTCTGTTAGTTTTGTTGG+GGG | - | chr1_4:55601221-55601240 | None:intergenic | 30.0% |
| !!! | GGTTTTTCTGTTAGTTTTGT+TGG | - | chr1_4:55601224-55601243 | None:intergenic | 30.0% |
| !! | TTGATGTTTAGTGGACTTGA+TGG | - | chr1_4:55598195-55598214 | None:intergenic | 35.0% |
| AAGTCCACTAAACATCAACA+TGG | + | chr1_4:55598197-55598216 | Msa0171080:CDS | 35.0% | |
| ATTACTTCAGCTCCTATAAC+TGG | - | chr1_4:55598285-55598304 | None:intergenic | 35.0% | |
| ATGAAGTTGAACCTTACAAC+AGG | + | chr1_4:55598393-55598412 | Msa0171080:CDS | 35.0% | |
| ! | ACTAAAGTGCTTGAAAAAGC+TGG | + | chr1_4:55598477-55598496 | Msa0171080:CDS | 35.0% |
| AACAGCACAAGTCTGAATAA+TGG | - | chr1_4:55598538-55598557 | None:intergenic | 35.0% | |
| TTCCGTTTCGTTAGAAATCA+AGG | + | chr1_4:55598637-55598656 | Msa0171080:intron | 35.0% | |
| GTCCTTGATTTCTAACGAAA+CGG | - | chr1_4:55598642-55598661 | None:intergenic | 35.0% | |
| TTCGTTAGAAATCAAGGACA+CGG | + | chr1_4:55598643-55598662 | Msa0171080:intron | 35.0% | |
| TAATCCAGAGTTCAGTTAGA+AGG | - | chr1_4:55598841-55598860 | None:intergenic | 35.0% | |
| TTAAAGAACCTGCATTTGGT+TGG | + | chr1_4:55598971-55598990 | Msa0171080:CDS | 35.0% | |
| TGTCTTAATTCCACTCAGAA+AGG | + | chr1_4:55599035-55599054 | Msa0171080:CDS | 35.0% | |
| ATACTACAAACCTTTCTGAG+TGG | - | chr1_4:55599048-55599067 | None:intergenic | 35.0% | |
| CACTTGGATAAGGTAAATTG+AGG | - | chr1_4:55599222-55599241 | None:intergenic | 35.0% | |
| CTCAATTTACCTTATCCAAG+TGG | + | chr1_4:55599220-55599239 | Msa0171080:CDS | 35.0% | |
| TCACACACAGGATGATAAAA+TGG | + | chr1_4:55599273-55599292 | Msa0171080:CDS | 35.0% | |
| TCTTATGGGGTTTCTTTAAG+TGG | + | chr1_4:55599451-55599470 | Msa0171080:CDS | 35.0% | |
| TTTGAACAGTTTCCAACCTT+TGG | + | chr1_4:55599501-55599520 | Msa0171080:CDS | 35.0% | |
| !! | GATTTTAGCACGACTTTTGT+GGG | + | chr1_4:55599655-55599674 | Msa0171080:CDS | 35.0% |
| CTATCAATTGCTCTAATCCT+TGG | + | chr1_4:55599841-55599860 | Msa0171080:CDS | 35.0% | |
| GACAGTTGAAACTAGAATCT+TGG | - | chr1_4:55599887-55599906 | None:intergenic | 35.0% | |
| !! | ATTCTAGTTTCAACTGTCCT+TGG | + | chr1_4:55599889-55599908 | Msa0171080:CDS | 35.0% |
| CAAGAGCAAGAACCATAAAA+AGG | + | chr1_4:55599927-55599946 | Msa0171080:CDS | 35.0% | |
| ATCATCAGCAGCTAATTCTA+AGG | - | chr1_4:55600054-55600073 | None:intergenic | 35.0% | |
| ACAAGCTCAAACATTCTTGA+AGG | + | chr1_4:55600103-55600122 | Msa0171080:CDS | 35.0% | |
| AGGTCTCACTGATATAAACA+TGG | + | chr1_4:55600283-55600302 | Msa0171080:CDS | 35.0% | |
| !!! | GAAAGTTGCACTATTTTTGC+TGG | + | chr1_4:55600319-55600338 | Msa0171080:CDS | 35.0% |
| ACTGTGACAGGAAAAGAAAA+TGG | + | chr1_4:55600344-55600363 | Msa0171080:CDS | 35.0% | |
| AGGAAAAGAAAATGGTGTAG+TGG | + | chr1_4:55600352-55600371 | Msa0171080:CDS | 35.0% | |
| TCTCATTAAATCCGTGATCT+CGG | + | chr1_4:55600394-55600413 | Msa0171080:CDS | 35.0% | |
| CATCAAATGCTTTGTAGAAC+AGG | - | chr1_4:55600544-55600563 | None:intergenic | 35.0% | |
| ! | GTTCTACAAAGCATTTGATG+TGG | + | chr1_4:55600544-55600563 | Msa0171080:CDS | 35.0% |
| TACAGAAACATGGCAGTTAT+AGG | + | chr1_4:55600608-55600627 | Msa0171080:CDS | 35.0% | |
| ACAGAAACATGGCAGTTATA+GGG | + | chr1_4:55600609-55600628 | Msa0171080:CDS | 35.0% | |
| !! | CATTGCTTGCAACTTTGTTT+TGG | + | chr1_4:55600659-55600678 | Msa0171080:CDS | 35.0% |
| !!! | CAACTTTGTTTTGGGTTCTT+TGG | + | chr1_4:55600668-55600687 | Msa0171080:CDS | 35.0% |
| ! | CATCCATTTCCCAATCTTTT+TGG | - | chr1_4:55600732-55600751 | None:intergenic | 35.0% |
| ACAAATTTCATGCAGATAGG+CGG | - | chr1_4:55600962-55600981 | None:intergenic | 35.0% | |
| TGACAAATAACACAGGTTTC+TGG | + | chr1_4:55601164-55601183 | Msa0171080:three_prime_UTR | 35.0% | |
| !!! | TTTCTGTTAGTTTTGTTGGG+GGG | - | chr1_4:55601220-55601239 | None:intergenic | 35.0% |
| AAGATGCTTTCTTCCAGCAA+AGG | - | chr1_4:55597973-55597992 | None:intergenic | 40.0% | |
| GAAGAAAGGTTGCCAGTTAT+AGG | + | chr1_4:55598270-55598289 | Msa0171080:CDS | 40.0% | |
| CTGTCCAATGTTCATCAGAT+TGG | - | chr1_4:55598308-55598327 | None:intergenic | 40.0% | |
| GTTGAACCTTACAACAGGAA+TGG | + | chr1_4:55598398-55598417 | Msa0171080:CDS | 40.0% | |
| TTGGAACCATTCCTGTTGTA+AGG | - | chr1_4:55598407-55598426 | None:intergenic | 40.0% | |
| GCAGCAGAGACATTCAAATT+TGG | - | chr1_4:55598426-55598445 | None:intergenic | 40.0% | |
| ! | GTATTTTCTTGGCGAGTGAA+TGG | - | chr1_4:55598516-55598535 | None:intergenic | 40.0% |
| ! | TGCTATAGCATTGCTGTTAG+TGG | + | chr1_4:55598561-55598580 | Msa0171080:CDS | 40.0% |
| TCGTTAACGAGATTCAGCTA+TGG | + | chr1_4:55598745-55598764 | Msa0171080:intron | 40.0% | |
| CTTACCTTCTAACTGAACTC+TGG | + | chr1_4:55598834-55598853 | Msa0171080:intron | 40.0% | |
| TTTGTGCTTGTGTGTATTGC+AGG | + | chr1_4:55598862-55598881 | Msa0171080:intron | 40.0% | |
| ! | AGGATTTGCTTCTTACCTGT+TGG | + | chr1_4:55598885-55598904 | Msa0171080:CDS | 40.0% |
| ! | GGATTTGCTTCTTACCTGTT+GGG | + | chr1_4:55598886-55598905 | Msa0171080:CDS | 40.0% |
| CTTACCTGTTGGGATTAAAC+AGG | + | chr1_4:55598896-55598915 | Msa0171080:CDS | 40.0% | |
| TCTTCCTGTTTAATCCCAAC+AGG | - | chr1_4:55598903-55598922 | None:intergenic | 40.0% | |
| GCAGTTAAAGAACCTGCATT+TGG | + | chr1_4:55598967-55598986 | Msa0171080:CDS | 40.0% | |
| ! | GTTGCACATTTTTCTGATGC+AGG | + | chr1_4:55599183-55599202 | Msa0171080:intron | 40.0% |
| GTTGCAAAACCACTTGGATA+AGG | - | chr1_4:55599232-55599251 | None:intergenic | 40.0% | |
| ! | CATCAATGGTTTTCACACAC+AGG | + | chr1_4:55599261-55599280 | Msa0171080:CDS | 40.0% |
| !! | CGATTTTAGCACGACTTTTG+TGG | + | chr1_4:55599654-55599673 | Msa0171080:CDS | 40.0% |
| ATTGCTCTAATCCTTGGTGA+TGG | + | chr1_4:55599847-55599866 | Msa0171080:CDS | 40.0% | |
| AAGTATATACGCCATCACCA+AGG | - | chr1_4:55599861-55599880 | None:intergenic | 40.0% | |
| TGATTCTTTCATGTACGCCA+AGG | - | chr1_4:55599909-55599928 | None:intergenic | 40.0% | |
| ! | GCTTGTTTAAGGTCACCATT+TGG | - | chr1_4:55600089-55600108 | None:intergenic | 40.0% |
| ACATAGTACCATTTCAGCTG+AGG | - | chr1_4:55600209-55600228 | None:intergenic | 40.0% | |
| ATGTTCGTATGCCAAGTAGT+TGG | + | chr1_4:55600479-55600498 | Msa0171080:CDS | 40.0% | |
| CAGAAACATGGCAGTTATAG+GGG | + | chr1_4:55600610-55600629 | Msa0171080:CDS | 40.0% | |
| !!! | GGGTTCTTTGGTTTTGCAAT+AGG | + | chr1_4:55600680-55600699 | Msa0171080:CDS | 40.0% |
| CACCCAAAAAGATTGGGAAA+TGG | + | chr1_4:55600726-55600745 | Msa0171080:CDS | 40.0% | |
| GAAATGGATGCCATTACCAA+TGG | + | chr1_4:55600742-55600761 | Msa0171080:CDS | 40.0% | |
| CTTTGCAATCGATATGTGCA+CGG | + | chr1_4:55600796-55600815 | Msa0171080:CDS | 40.0% | |
| TTTGCAATCGATATGTGCAC+GGG | + | chr1_4:55600797-55600816 | Msa0171080:CDS | 40.0% | |
| AACCATCAACTCTGCTTTCT+TGG | - | chr1_4:55600858-55600877 | None:intergenic | 40.0% | |
| !!! | GCAGATAGGCGGATTAATTT+TGG | - | chr1_4:55600951-55600970 | None:intergenic | 40.0% |
| TCGACATTGCTTTATGGGTT+GGG | - | chr1_4:55601002-55601021 | None:intergenic | 40.0% | |
| TTCGACATTGCTTTATGGGT+TGG | - | chr1_4:55601003-55601022 | None:intergenic | 40.0% | |
| AGCAATGTCGAACATTAGCT+AGG | + | chr1_4:55601011-55601030 | Msa0171080:three_prime_UTR | 40.0% | |
| GCAATGTCGAACATTAGCTA+GGG | + | chr1_4:55601012-55601031 | Msa0171080:three_prime_UTR | 40.0% | |
| CAGGTTCTTTAACTGCGCTT+GGG | - | chr1_4:55598963-55598982 | None:intergenic | 45.0% | |
| !! | TCCAAGTGGTTTTGCAACAG+CGG | + | chr1_4:55599234-55599253 | Msa0171080:CDS | 45.0% |
| TATTGCAGGAAGCAAGTGCA+TGG | + | chr1_4:55599402-55599421 | Msa0171080:intron | 45.0% | |
| ATTGCAGGAAGCAAGTGCAT+GGG | + | chr1_4:55599403-55599422 | Msa0171080:intron | 45.0% | |
| TTCTCAGGCAAAGAAGACTG+TGG | + | chr1_4:55599477-55599496 | Msa0171080:CDS | 45.0% | |
| CAAGCTTGCAATCCAAAGGT+TGG | - | chr1_4:55599516-55599535 | None:intergenic | 45.0% | |
| CAACCTTTGGATTGCAAGCT+TGG | + | chr1_4:55599514-55599533 | Msa0171080:CDS | 45.0% | |
| CTTCCAAGCTTGCAATCCAA+AGG | - | chr1_4:55599520-55599539 | None:intergenic | 45.0% | |
| CAGAGACAAGTTCACAAGGT+GGG | - | chr1_4:55599698-55599717 | None:intergenic | 45.0% | |
| TTATGTATCCGCTCGTCGAT+CGG | + | chr1_4:55599746-55599765 | Msa0171080:CDS | 45.0% | |
| TTAGCTGCTGATGATCTGCA+CGG | + | chr1_4:55600059-55600078 | Msa0171080:CDS | 45.0% | |
| !! | TGAAGGAGAGCATTCCAATG+TGG | + | chr1_4:55600120-55600139 | Msa0171080:CDS | 45.0% |
| !! | GAGAGCATTCCAATGTGGAT+CGG | + | chr1_4:55600125-55600144 | Msa0171080:CDS | 45.0% |
| ! | AGAGCATTCCAATGTGGATC+GGG | + | chr1_4:55600126-55600145 | Msa0171080:CDS | 45.0% |
| GCATGTTTCCTCAGCTGAAA+TGG | + | chr1_4:55600198-55600217 | Msa0171080:CDS | 45.0% | |
| ! | CTTGCATTCTGCAACGCTTT+TGG | + | chr1_4:55600257-55600276 | Msa0171080:CDS | 45.0% |
| ! | TTTTTGCTGGCAACTGTGAC+AGG | + | chr1_4:55600332-55600351 | Msa0171080:CDS | 45.0% |
| ATTGCAAGACACCGAGATCA+CGG | - | chr1_4:55600408-55600427 | None:intergenic | 45.0% | |
| TAGAACAGGAAGAAGCTCAG+AGG | - | chr1_4:55600530-55600549 | None:intergenic | 45.0% | |
| TTTGATGTGGGAAACCCACA+TGG | + | chr1_4:55600557-55600576 | Msa0171080:CDS | 45.0% | |
| !! | GGGCTTTGAATTCTCCATGT+GGG | - | chr1_4:55600574-55600593 | None:intergenic | 45.0% |
| ATGGCAGTTATAGGGGTTCA+AGG | + | chr1_4:55600617-55600636 | Msa0171080:CDS | 45.0% | |
| CAAAGTTGCAAGCAATGTCG+AGG | - | chr1_4:55600656-55600675 | None:intergenic | 45.0% | |
| GATGCCATTACCAATGGTCA+TGG | + | chr1_4:55600748-55600767 | Msa0171080:CDS | 45.0% | |
| AAGTATGCCCCTACCAGAAA+AGG | - | chr1_4:55600779-55600798 | None:intergenic | 45.0% | |
| CTCCAAGAAAGCAGAGTTGA+TGG | + | chr1_4:55600853-55600872 | Msa0171080:CDS | 45.0% | |
| ATTGCCTCCGGACTAATTTG+CGG | + | chr1_4:55600884-55600903 | Msa0171080:CDS | 45.0% | |
| TGGAATACAGTTCTTGCTGC+AGG | + | chr1_4:55601184-55601203 | Msa0171080:three_prime_UTR | 45.0% | |
| !! | ATAATACTAATATTAATATA+TGG | + | chr1_4:55599998-55600017 | Msa0171080:intron | 5.0% |
| !! | TAATACTAATATTAATATAT+GGG | + | chr1_4:55599999-55600018 | Msa0171080:intron | 5.0% |
| GTGCTTGTGTGTATTGCAGG+AGG | + | chr1_4:55598865-55598884 | Msa0171080:intron | 50.0% | |
| ! | ATTGTCTGGAGTAGGGACTG+AGG | + | chr1_4:55598930-55598949 | Msa0171080:CDS | 50.0% |
| ! | TTGTCTGGAGTAGGGACTGA+GGG | + | chr1_4:55598931-55598950 | Msa0171080:CDS | 50.0% |
| GCAGGTTCTTTAACTGCGCT+TGG | - | chr1_4:55598964-55598983 | None:intergenic | 50.0% | |
| CCAGACATCCAACCAAATGC+AGG | - | chr1_4:55598982-55599001 | None:intergenic | 50.0% | |
| CCTGCATTTGGTTGGATGTC+TGG | + | chr1_4:55598979-55598998 | Msa0171080:CDS | 50.0% | |
| ACCGCTGTTGCAAAACCACT+TGG | - | chr1_4:55599238-55599257 | None:intergenic | 50.0% | |
| GCAACAGCGGTTCTCATCAA+TGG | + | chr1_4:55599247-55599266 | Msa0171080:CDS | 50.0% | |
| GCAGAGACAAGTTCACAAGG+TGG | - | chr1_4:55599699-55599718 | None:intergenic | 50.0% | |
| GGAGCAGAGACAAGTTCACA+AGG | - | chr1_4:55599702-55599721 | None:intergenic | 50.0% | |
| GTGAACTTGTCTCTGCTCCT+TGG | + | chr1_4:55599703-55599722 | Msa0171080:CDS | 50.0% | |
| ! | CATAAGAGAGCACAGCTCCA+AGG | - | chr1_4:55599723-55599742 | None:intergenic | 50.0% |
| CTTGGAGCTGTGCTCTCTTA+TGG | + | chr1_4:55599721-55599740 | Msa0171080:CDS | 50.0% | |
| TCGATCGGCGTAAAGGAAAC+TGG | + | chr1_4:55599761-55599780 | Msa0171080:CDS | 50.0% | |
| TAGCTGCTGATGATCTGCAC+GGG | + | chr1_4:55600060-55600079 | Msa0171080:CDS | 50.0% | |
| GATCTGCACGGGAATCCAAA+TGG | + | chr1_4:55600071-55600090 | Msa0171080:CDS | 50.0% | |
| GAGCATTCCAATGTGGATCG+GGG | + | chr1_4:55600127-55600146 | Msa0171080:CDS | 50.0% | |
| TGGATCGGGGTAGTTGGATA+TGG | + | chr1_4:55600140-55600159 | Msa0171080:CDS | 50.0% | |
| TTCAGCTGAGGAAACATGCG+CGG | - | chr1_4:55600197-55600216 | None:intergenic | 50.0% | |
| GCGTTGCAGAATGCAAGAGA+TGG | - | chr1_4:55600254-55600273 | None:intergenic | 50.0% | |
| !!! | TTCTGCAACGCTTTTGGAGC+AGG | + | chr1_4:55600263-55600282 | Msa0171080:CDS | 50.0% |
| CAAGTAGTTGGCACTGCGAT+GGG | + | chr1_4:55600491-55600510 | Msa0171080:CDS | 50.0% | |
| AAGTAGTTGGCACTGCGATG+GGG | + | chr1_4:55600492-55600511 | Msa0171080:CDS | 50.0% | |
| !! | GGGGCTTTGAATTCTCCATG+TGG | - | chr1_4:55600575-55600594 | None:intergenic | 50.0% |
| ACGGCCATGACCATTGGTAA+TGG | - | chr1_4:55600755-55600774 | None:intergenic | 50.0% | |
| ! | AAAGGTACGGCCATGACCAT+TGG | - | chr1_4:55600761-55600780 | None:intergenic | 50.0% |
| !! | ATGGCCGTACCTTTTCTGGT+AGG | + | chr1_4:55600767-55600786 | Msa0171080:CDS | 50.0% |
| !! | TGGCCGTACCTTTTCTGGTA+GGG | + | chr1_4:55600768-55600787 | Msa0171080:CDS | 50.0% |
| TGCCCCTACCAGAAAAGGTA+CGG | - | chr1_4:55600774-55600793 | None:intergenic | 50.0% | |
| CGATATGTGCACGGGTAGTT+TGG | + | chr1_4:55600805-55600824 | Msa0171080:CDS | 50.0% | |
| ATGGTTCCAGCAATTGCCTC+CGG | + | chr1_4:55600872-55600891 | Msa0171080:CDS | 50.0% | |
| ATTAGTCCGGAGGCAATTGC+TGG | - | chr1_4:55600881-55600900 | None:intergenic | 50.0% | |
| ! | TTGCCTCCGGACTAATTTGC+GGG | + | chr1_4:55600885-55600904 | Msa0171080:CDS | 50.0% |
| TCCTTCCCCGCAAATTAGTC+CGG | - | chr1_4:55600894-55600913 | None:intergenic | 50.0% | |
| ! | TAATTTGCGGGGAAGGACTG+TGG | + | chr1_4:55600897-55600916 | Msa0171080:CDS | 50.0% |
| GCTAGAGCAAGAATAGCAGC+AGG | - | chr1_4:55600929-55600948 | None:intergenic | 50.0% | |
| ! | TTCCAGCAAAGGCGCGGATA+CGG | - | chr1_4:55597962-55597981 | None:intergenic | 55.0% |
| GCTTTCTTCCAGCAAAGGCG+CGG | - | chr1_4:55597968-55597987 | None:intergenic | 55.0% | |
| ! | AGCACGACTTTTGTGGGAGC+AGG | + | chr1_4:55599661-55599680 | Msa0171080:CDS | 55.0% |
| CCAACTACCCCGATCCACAT+TGG | - | chr1_4:55600137-55600156 | None:intergenic | 55.0% | |
| CCAATGTGGATCGGGGTAGT+TGG | + | chr1_4:55600134-55600153 | Msa0171080:CDS | 55.0% | |
| TCAGCTGAGGAAACATGCGC+GGG | - | chr1_4:55600196-55600215 | None:intergenic | 55.0% | |
| GGTGTAGTGGCAGCACTTGT+TGG | + | chr1_4:55600365-55600384 | Msa0171080:CDS | 55.0% | |
| ! | GTGGCAGCACTTGTTGGTTG+TGG | + | chr1_4:55600371-55600390 | Msa0171080:CDS | 55.0% |
| TGGCATACGAACATCGCCCT+GGG | - | chr1_4:55600473-55600492 | None:intergenic | 55.0% | |
| TTGGCATACGAACATCGCCC+TGG | - | chr1_4:55600474-55600493 | None:intergenic | 55.0% | |
| CCATCGCAGTGCCAACTACT+TGG | - | chr1_4:55600493-55600512 | None:intergenic | 55.0% | |
| CCAAGTAGTTGGCACTGCGA+TGG | + | chr1_4:55600490-55600509 | Msa0171080:CDS | 55.0% | |
| ! | GGTCATGGCCGTACCTTTTC+TGG | + | chr1_4:55600763-55600782 | Msa0171080:CDS | 55.0% |
| !! | GGCCGTACCTTTTCTGGTAG+GGG | + | chr1_4:55600769-55600788 | Msa0171080:CDS | 55.0% |
| ! | TGCCTCCGGACTAATTTGCG+GGG | + | chr1_4:55600886-55600905 | Msa0171080:CDS | 55.0% |
| TTCCCCGCAAATTAGTCCGG+AGG | - | chr1_4:55600891-55600910 | None:intergenic | 55.0% | |
| ! | TCCGGACTAATTTGCGGGGA+AGG | + | chr1_4:55600890-55600909 | Msa0171080:CDS | 55.0% |
| ! | GCAAAGGCGCGGATACGGTA+TGG | - | chr1_4:55597957-55597976 | None:intergenic | 60.0% |
| TACCGTATCCGCGCCTTTGC+TGG | + | chr1_4:55597957-55597976 | Msa0171080:five_prime_UTR | 60.0% | |
| CCTTTACGCCGATCGACGAG+CGG | - | chr1_4:55599757-55599776 | None:intergenic | 60.0% | |
| ATTGCACACGCACCTCTCCC+AGG | + | chr1_4:55600453-55600472 | Msa0171080:CDS | 60.0% | |
| TTGCACACGCACCTCTCCCA+GGG | + | chr1_4:55600454-55600473 | Msa0171080:CDS | 60.0% | |
| TACGAACATCGCCCTGGGAG+AGG | - | chr1_4:55600468-55600487 | None:intergenic | 60.0% | |
| CCGCTCGTCGATCGGCGTAA+AGG | + | chr1_4:55599754-55599773 | Msa0171080:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 55597953 | 55601243 | 55597953 | ID=Msa0171080;Name=Msa0171080 |
| chr1_4 | mRNA | 55597953 | 55601243 | 55597953 | ID=Msa0171080-mRNA-1;Parent=Msa0171080;Name=Msa0171080-mRNA-1;_AED=0.07;_eAED=0.07;_QI=121|1|1|1|0.83|0.71|7|252|680 |
| chr1_4 | exon | 55597953 | 55598053 | 55597953 | ID=Msa0171080-mRNA-1:exon:16665;Parent=Msa0171080-mRNA-1 |
| chr1_4 | exon | 55598163 | 55598582 | 55598163 | ID=Msa0171080-mRNA-1:exon:16666;Parent=Msa0171080-mRNA-1 |
| chr1_4 | exon | 55598884 | 55599056 | 55598884 | ID=Msa0171080-mRNA-1:exon:16667;Parent=Msa0171080-mRNA-1 |
| chr1_4 | exon | 55599205 | 55599299 | 55599205 | ID=Msa0171080-mRNA-1:exon:16668;Parent=Msa0171080-mRNA-1 |
| chr1_4 | exon | 55599410 | 55599544 | 55599410 | ID=Msa0171080-mRNA-1:exon:16669;Parent=Msa0171080-mRNA-1 |
| chr1_4 | exon | 55599645 | 55599949 | 55599645 | ID=Msa0171080-mRNA-1:exon:16670;Parent=Msa0171080-mRNA-1 |
| chr1_4 | exon | 55600057 | 55601243 | 55600057 | ID=Msa0171080-mRNA-1:exon:16671;Parent=Msa0171080-mRNA-1 |
| chr1_4 | five_prime_UTR | 55597953 | 55598053 | 55597953 | ID=Msa0171080-mRNA-1:five_prime_utr;Parent=Msa0171080-mRNA-1 |
| chr1_4 | five_prime_UTR | 55598163 | 55598182 | 55598163 | ID=Msa0171080-mRNA-1:five_prime_utr;Parent=Msa0171080-mRNA-1 |
| chr1_4 | CDS | 55598183 | 55598582 | 55598183 | ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1 |
| chr1_4 | CDS | 55598884 | 55599056 | 55598884 | ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1 |
| chr1_4 | CDS | 55599205 | 55599299 | 55599205 | ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1 |
| chr1_4 | CDS | 55599410 | 55599544 | 55599410 | ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1 |
| chr1_4 | CDS | 55599645 | 55599949 | 55599645 | ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1 |
| chr1_4 | CDS | 55600057 | 55600991 | 55600057 | ID=Msa0171080-mRNA-1:cds;Parent=Msa0171080-mRNA-1 |
| chr1_4 | three_prime_UTR | 55600992 | 55601243 | 55600992 | ID=Msa0171080-mRNA-1:three_prime_utr;Parent=Msa0171080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
