AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036460 MtrunA17_Chr1g0198921 99.038 1039 10 0 1 1039 1 1039 0.0 2127
Msa0036460 MtrunA17_Chr0c01g0489521 77.509 1116 168 9 1 1039 43 1152 0.0 1702
Msa0036460 MtrunA17_Chr8g0360571 46.440 618 282 5 455 1039 366 967 5.95e-180 550
Msa0036460 MtrunA17_Chr8g0360571 38.603 272 154 5 71 329 77 348 2.11e-48 187
Msa0036460 MtrunA17_Chr4g0041131 45.994 624 288 5 449 1039 359 966 1.51e-179 548
Msa0036460 MtrunA17_Chr4g0041131 38.869 283 157 6 71 337 77 359 9.09e-51 194
Msa0036460 MtrunA17_Chr2g0325821 45.353 624 292 5 449 1039 359 966 4.05e-176 540
Msa0036460 MtrunA17_Chr2g0325821 39.576 283 155 6 71 337 77 359 2.33e-51 196
Msa0036460 MtrunA17_Chr2g0315891 45.806 620 283 6 455 1039 365 966 1.80e-174 535
Msa0036460 MtrunA17_Chr2g0315891 38.603 272 154 5 71 329 76 347 2.56e-48 187
Msa0036460 MtrunA17_Chr1g0148101 35.204 392 170 11 551 940 1 310 6.40e-60 207
Msa0036460 MtrunA17_Chr7g0238121 64.486 107 16 2 189 280 1 100 2.83e-36 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036460 AT1G68750.1 75.985 1041 239 4 1 1039 1 1032 0.0 1599
Msa0036460 AT2G42600.2 46.709 623 284 6 449 1039 357 963 2.95e-178 545
Msa0036460 AT2G42600.2 36.667 300 167 7 71 355 77 368 8.97e-48 185
Msa0036460 AT2G42600.1 46.709 623 284 6 449 1039 357 963 2.95e-178 545
Msa0036460 AT2G42600.1 36.667 300 167 7 71 355 77 368 8.97e-48 185
Msa0036460 AT2G42600.3 46.709 623 284 6 449 1039 357 963 2.95e-178 545
Msa0036460 AT2G42600.3 36.667 300 167 7 71 355 77 368 8.97e-48 185
Msa0036460 AT1G53310.2 46.440 618 282 5 455 1039 366 967 4.59e-178 545
Msa0036460 AT1G53310.2 38.079 302 163 7 71 355 77 371 2.93e-50 193
Msa0036460 AT1G53310.1 46.440 618 282 5 455 1039 366 967 4.59e-178 545
Msa0036460 AT1G53310.1 38.079 302 163 7 71 355 77 371 2.93e-50 193
Msa0036460 AT1G53310.3 46.440 618 282 5 455 1039 366 967 4.59e-178 545
Msa0036460 AT1G53310.3 38.079 302 163 7 71 355 77 371 2.93e-50 193
Msa0036460 AT3G14940.1 46.688 619 280 6 455 1039 366 968 1.21e-175 539
Msa0036460 AT3G14940.1 39.073 302 160 8 71 355 77 371 1.77e-51 197
Msa0036460 AT3G14940.2 46.688 619 280 6 455 1039 366 968 1.21e-175 539
Msa0036460 AT3G14940.2 39.073 302 160 8 71 355 77 371 1.77e-51 197

Find 289 sgRNAs with CRISPR-Local

Find 559 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGCATCTCTGAGTTTA+AGG 0.106305 1_1:-65053188 None:intergenic
CATCCAAGTTCCAAACTTTA+TGG 0.132919 1_1:-65047257 None:intergenic
GCTTTGCTTATCACCGTAAA+TGG 0.145481 1_1:+65053204 Msa0036460:CDS
TGATGCAGTTACAACATATT+TGG 0.164824 1_1:+65049929 Msa0036460:CDS
CTTCAACATGTAGCATCTTT+TGG 0.216012 1_1:+65046653 Msa0036460:intron
AGTTACAACATATTTGGATA+TGG 0.231474 1_1:+65049935 Msa0036460:CDS
ATCAGCATTTCTCGATCTTC+AGG 0.245771 1_1:-65046702 None:intergenic
TTTGTGTTCTTCCTTCTTGC+AGG 0.245866 1_1:-65052718 None:intergenic
ATGGTTGGATATTCTGATTC+TGG 0.258407 1_1:+65051698 Msa0036460:CDS
AAGATTGGTATTAGCCATTA+TGG 0.278448 1_1:+65053342 Msa0036460:three_prime_UTR
CTCTAAAAGCTTCTGAAAAC+TGG 0.293404 1_1:-65048837 None:intergenic
ATTGTTCAGGCAATCAAATA+TGG 0.296875 1_1:+65053504 Msa0036460:three_prime_UTR
TCCCACCCCGAGATGAAAAT+TGG 0.299079 1_1:+65052557 Msa0036460:CDS
GAAATGGTAGAGGCTAAGTT+TGG 0.300010 1_1:+65052460 Msa0036460:CDS
TGAAACAGCTGACCAGCTTT+TGG 0.305920 1_1:+65049602 Msa0036460:CDS
CCCAGCAGCAATCCCATTTA+CGG 0.307234 1_1:-65053217 None:intergenic
ATGGGATGAAGAAAAGAAAT+TGG 0.307389 1_1:+65049971 Msa0036460:CDS
AGAAACTTCAGCAGAATAAT+AGG 0.308883 1_1:+65053067 Msa0036460:CDS
GCTTGCTGCTATTGGAGAAT+TGG 0.313039 1_1:+65051030 Msa0036460:CDS
CTTCAGCAATCATGTGGGTC+TGG 0.317808 1_1:+65049725 Msa0036460:intron
CTTCTGAACAACTATAATAA+TGG 0.331819 1_1:+65053263 Msa0036460:three_prime_UTR
CTCACCTTTGCGGTAACGTT+TGG 0.334654 1_1:-65047301 None:intergenic
GACCTTATTGAGATGGTGTT+AGG 0.335377 1_1:+65052913 Msa0036460:CDS
CTATTCCCTGGGTATTTGCT+TGG 0.336715 1_1:+65052761 Msa0036460:CDS
GTAGCTGCTTGCAATGATTA+TGG 0.337387 1_1:+65051779 Msa0036460:CDS
ATTCGTAGAGTTGCAACCTT+TGG 0.349488 1_1:+65049779 Msa0036460:CDS
CCACAGCTCCCTCAACTTGC+TGG 0.351216 1_1:+65048860 Msa0036460:CDS
TGGCTATTGACCTCTATATT+CGG 0.351376 1_1:+65047621 Msa0036460:CDS
CTGTTTCACTTCTATCTAGA+TGG 0.356352 1_1:+65047597 Msa0036460:CDS
ACTTGCACTCCCATAAAGTT+TGG 0.358450 1_1:+65047247 Msa0036460:CDS
CAGTCATTATCTTACTATGA+TGG 0.363104 1_1:+65045702 Msa0036460:CDS
GCCACTAGTTCCTGTTAGTA+TGG 0.363267 1_1:+65050025 Msa0036460:CDS
TCTCACAGGTTTGAATATAG+TGG 0.366572 1_1:+65047053 Msa0036460:intron
GGTTCGTAAAGGAGGGAATA+TGG 0.367321 1_1:+65046122 Msa0036460:CDS
CTAGCTGCATTACAGGAATC+TGG 0.367694 1_1:+65049888 Msa0036460:intron
TTCAGCAATCATGTGGGTCT+GGG 0.368013 1_1:+65049726 Msa0036460:intron
CAATCCCATGAACCTGTTGC+AGG 0.368697 1_1:+65053128 Msa0036460:CDS
AGGAAGAACACAAAGGGAAT+TGG 0.369646 1_1:+65052727 Msa0036460:CDS
TAACTGAACCAGCACCTCTT+AGG 0.373958 1_1:-65051516 None:intergenic
TTGAGAACTTACCAGATTGC+AGG 0.374921 1_1:-65053432 None:intergenic
GATGCACGGCTTGCTGCTAT+TGG 0.377320 1_1:+65051022 Msa0036460:CDS
ATCCAAGTTCCAAACTTTAT+GGG 0.378571 1_1:-65047256 None:intergenic
CTGCTTCAGGCGTGGCTTCG+TGG 0.378796 1_1:-65052666 None:intergenic
TGGCCGCTTCACTGCTGCTT+GGG 0.379895 1_1:+65051730 Msa0036460:CDS
AAACAAACCATTCACCATAA+TGG 0.382647 1_1:-65053356 None:intergenic
TTTCCCAGGACAACTCTATA+AGG 0.392064 1_1:-65048890 None:intergenic
CTTCCAGCTTGGCTCGGAGT+TGG 0.392451 1_1:+65052802 Msa0036460:CDS
AGTCTATTGATAAAAGTTTC+CGG 0.395571 1_1:-65051540 None:intergenic
CTGGCCGCTTCACTGCTGCT+TGG 0.395587 1_1:+65051729 Msa0036460:CDS
CTAGCACATGAAATTCTAGA+AGG 0.398688 1_1:+65047704 Msa0036460:CDS
TAATAGGAGCTTGAGGAGGT+TGG 0.402520 1_1:+65053083 Msa0036460:CDS
TGCTCCTTATAGAGTTGTCC+TGG 0.405365 1_1:+65048886 Msa0036460:CDS
TCTATTGTACTTTGAAAGAA+AGG 0.405607 1_1:-65052892 None:intergenic
GCTCCTCTGTTATGAATCTC+TGG 0.406497 1_1:+65049632 Msa0036460:CDS
TTGAAAGGTGCTTGTGAGAA+AGG 0.408319 1_1:+65052832 Msa0036460:CDS
CTCCCATAAAGTTTGGAACT+TGG 0.409973 1_1:+65047254 Msa0036460:CDS
CTCCACCTGCAACAGGTTCA+TGG 0.410924 1_1:-65053133 None:intergenic
AGAGCTTCGATGATGATTGT+AGG 0.410996 1_1:+65045217 Msa0036460:CDS
GCTATTCAGTCCCAACCACC+TGG 0.416046 1_1:+65051869 Msa0036460:CDS
AGGAGCCTATGTGATATCTA+TGG 0.416320 1_1:+65050854 Msa0036460:CDS
GAAACCTTCGTGCTATTCCC+TGG 0.416675 1_1:+65052749 Msa0036460:CDS
ACCGTAAATGGGATTGCTGC+TGG 0.417768 1_1:+65053216 Msa0036460:CDS
TGCTGATGTTAAAGAAGTCT+TGG 0.419254 1_1:+65050791 Msa0036460:CDS
AGAAATGCTGATTGAGGATC+TGG 0.420397 1_1:+65046713 Msa0036460:CDS
AGTGTTGACTGGTGTGTTAA+AGG 0.420623 1_1:-65044983 None:intergenic
TGTCTCACCTCCATACTAAC+AGG 0.420987 1_1:-65050035 None:intergenic
TCTACCTTGTGATCAGGTCC+TGG 0.421399 1_1:-65048565 None:intergenic
ACATGTTTACATTAGGTTGC+GGG 0.422004 1_1:+65051465 Msa0036460:intron
TGTTACTGATACTTTAAGAC+TGG 0.424175 1_1:-65048705 None:intergenic
TAGGTTTGTTCAGTAAAGAT+TGG 0.425413 1_1:+65053327 Msa0036460:three_prime_UTR
GTTACAACATATTTGGATAT+GGG 0.425578 1_1:+65049936 Msa0036460:CDS
TCCTTCACGGTTTCAAATAG+AGG 0.428095 1_1:-65051493 None:intergenic
GAGGTGCTGGTTCAGTTATC+CGG 0.429326 1_1:+65051521 Msa0036460:CDS
GAAAACTGGACTTTCCTGTC+TGG 0.430217 1_1:-65048823 None:intergenic
TTGCCAGTTCTGAGTGTAGT+TGG 0.430252 1_1:-65048680 None:intergenic
CTTGCTGCTATTGGAGAATT+GGG 0.430420 1_1:+65051031 Msa0036460:CDS
GAGTTGTAAGAGGGAGAAGA+TGG 0.433748 1_1:-65048764 None:intergenic
GTATTAGCCATTATGGTGAA+TGG 0.434263 1_1:+65053349 Msa0036460:three_prime_UTR
TCAGAATCTCCACCTGCAAC+AGG 0.436922 1_1:-65053140 None:intergenic
AGGCGGTGGCCCTACATATC+TGG 0.437685 1_1:+65051847 Msa0036460:CDS
TGCATGTGACTATGATCCTT+TGG 0.439479 1_1:+65049572 Msa0036460:CDS
TCCCTAACACCATCTCAATA+AGG 0.439617 1_1:-65052915 None:intergenic
GCCACGCCTGAAGCAGAGCT+TGG 0.440319 1_1:+65052673 Msa0036460:CDS
AACACTTCGGTCTACCGAGC+AGG 0.441668 1_1:+65052435 Msa0036460:CDS
GGCTATTGACCTCTATATTC+GGG 0.443763 1_1:+65047622 Msa0036460:CDS
TGAGAGAGATAACTTCAATA+TGG 0.445525 1_1:+65046863 Msa0036460:CDS
CATGGCCGTGGAGGCAGTAT+TGG 0.446124 1_1:+65051821 Msa0036460:CDS
CCAGATTTGTTCTTCCAGCT+TGG 0.448126 1_1:+65052791 Msa0036460:CDS
CCAAGCTGGAAGAACAAATC+TGG 0.448959 1_1:-65052791 None:intergenic
GTGTTGACTGGTGTGTTAAA+GGG 0.449222 1_1:-65044982 None:intergenic
GGCAGTATTGGTCGAGGCGG+TGG 0.449566 1_1:+65051833 Msa0036460:CDS
CCAGCTCTAGCTTCATCAAC+TGG 0.450656 1_1:-65046919 None:intergenic
GTCTACCGAGCAGGGAGAAA+TGG 0.450962 1_1:+65052444 Msa0036460:CDS
CATAAAGTTTGGAACTTGGA+TGG 0.451055 1_1:+65047258 Msa0036460:CDS
TTCCGAATCGCTGCTGAACT+AGG 0.451804 1_1:+65050819 Msa0036460:CDS
TGTTCAGAAGCAGCGTTAAC+CGG 0.452536 1_1:-65053250 None:intergenic
ACTGTGTTGTAAAGATCATC+CGG 0.454214 1_1:-65046204 None:intergenic
GGTGTGTTAAAGGGGAAGTT+TGG 0.455140 1_1:-65044973 None:intergenic
CATCACAGACCCAGGTGGTT+GGG 0.463137 1_1:-65051879 None:intergenic
CTTTGCTTATCACCGTAAAT+GGG 0.463812 1_1:+65053205 Msa0036460:CDS
ATATGGGTACTTATAGTGAA+TGG 0.464922 1_1:+65049952 Msa0036460:CDS
TACAATCATCATCGAAGCTC+TGG 0.466446 1_1:-65045215 None:intergenic
CCTGGGAAATGTAAAGGATA+AGG 0.469149 1_1:+65048904 Msa0036460:CDS
GGCAGAGTGCATGTAATATG+AGG 0.469229 1_1:+65045578 Msa0036460:intron
CACTGCAATACAAACACATT+CGG 0.470757 1_1:+65046527 Msa0036460:CDS
AGTCATTATCTTACTATGAT+GGG 0.472061 1_1:+65045703 Msa0036460:CDS
GGAGCAGAGGTTCCAAAAGC+TGG 0.475317 1_1:-65049614 None:intergenic
TGAAAATTGGCGTAGTCTCA+TGG 0.476454 1_1:+65052570 Msa0036460:CDS
TTGTGTTCTTCCTTCTTGCA+GGG 0.476962 1_1:-65052717 None:intergenic
CGGTTGACTAGAGTTGTAAG+AGG 0.477528 1_1:-65048774 None:intergenic
TAAAAGCAATGTACAAAGAA+TGG 0.478411 1_1:+65052869 Msa0036460:CDS
TGTGCAGGGTGGAGTTTCCC+CGG 0.478623 1_1:+65046185 Msa0036460:CDS
GCTTGGCTCGGAGTTGGAGC+AGG 0.478720 1_1:+65052808 Msa0036460:CDS
GAGCAATTCCAGCAAGTTGA+GGG 0.480050 1_1:-65048868 None:intergenic
TCCCTAGTTCAGCAGCGATT+CGG 0.481902 1_1:-65050821 None:intergenic
TTTGTTCTTCCAGCTTGGCT+CGG 0.482407 1_1:+65052796 Msa0036460:CDS
AAGACTTCTTTAACATCAGC+AGG 0.482543 1_1:-65050789 None:intergenic
AAAACTGGACTTTCCTGTCT+GGG 0.483522 1_1:-65048822 None:intergenic
AGGTTCATGGGATTGAGAAA+TGG 0.484409 1_1:-65053120 None:intergenic
GAGGGTAAATGAGCTCTAGC+TGG 0.485019 1_1:-65048228 None:intergenic
ACCTTATTGAGATGGTGTTA+GGG 0.488944 1_1:+65052914 Msa0036460:CDS
GTTCTGAGTGTAGTTGGACT+TGG 0.489764 1_1:-65048674 None:intergenic
AGGAAGCCAAGCTCTGCTTC+AGG 0.492553 1_1:-65052679 None:intergenic
AATTGATCTACCTTGTGATC+AGG 0.496505 1_1:-65048571 None:intergenic
TTGGGAACTTTACAAAGCTC+AGG 0.497178 1_1:+65051748 Msa0036460:CDS
CAGGGCGACTACCTATGTTC+AGG 0.498058 1_1:-65052699 None:intergenic
GGAGTGCAAGTCAGTGGAAG+TGG 0.498492 1_1:-65047235 None:intergenic
TGTGTTTAACCAGCTTGTGC+AGG 0.501342 1_1:+65046170 Msa0036460:CDS
CTCTACCATTTCTCCCTGCT+CGG 0.502297 1_1:-65052449 None:intergenic
CTTAGTGTAGCAGTGTTGAC+TGG 0.504709 1_1:-65044994 None:intergenic
GCTCCAACTCCGAGCCAAGC+TGG 0.505446 1_1:-65052805 None:intergenic
ACGAGAATCGCCATGAGAGT+TGG 0.506900 1_1:+65048163 Msa0036460:CDS
TGACCTCTATATTCGGGAAG+TGG 0.507739 1_1:+65047628 Msa0036460:CDS
GACATTCTTCACCGTGAAGT+TGG 0.507840 1_1:+65045261 Msa0036460:CDS
CCATGTCTTCAGCAATCATG+TGG 0.508496 1_1:+65049719 Msa0036460:intron
AGCACCTCTTAGGTCCTTCA+CGG 0.509480 1_1:-65051506 None:intergenic
CAATACTGCCTCCACGGCCA+TGG 0.510703 1_1:-65051820 None:intergenic
GCTCTAGCTGGAAGCTGTGT+TGG 0.512706 1_1:-65048216 None:intergenic
AAATGGTAGAGGCTAAGTTT+GGG 0.514174 1_1:+65052461 Msa0036460:CDS
GAAGAAGTTCTAACCGTCTA+CGG 0.515159 1_1:-65049539 None:intergenic
TTGTTCAGGCAATCAAATAT+GGG 0.515891 1_1:+65053505 Msa0036460:three_prime_UTR
GATGATGATTGTAGGTTGCT+TGG 0.516176 1_1:+65045225 Msa0036460:CDS
AATTGAAGATGAAGAACCAT+TGG 0.516879 1_1:-65048741 None:intergenic
CGATCTTCAGGGCTAAGATC+AGG 0.517591 1_1:-65046690 None:intergenic
TCAGCATTTCTCGATCTTCA+GGG 0.517745 1_1:-65046701 None:intergenic
TCATCTCGGGGTGGGAGAGG+TGG 0.518044 1_1:-65052550 None:intergenic
TATCCACTTCCCGAATATAG+AGG 0.519946 1_1:-65047631 None:intergenic
TCCACCTGCAACAGGTTCAT+GGG 0.520556 1_1:-65053132 None:intergenic
CCTTATCCTTTACATTTCCC+AGG 0.522515 1_1:-65048904 None:intergenic
TTGTATATGCAGGTTATGGT+TGG 0.523719 1_1:+65051683 Msa0036460:intron
GCCAAGCTCTGCTTCAGGCG+TGG 0.526504 1_1:-65052674 None:intergenic
ATTATGTGTACCAGCAAAAG+AGG 0.526645 1_1:-65048247 None:intergenic
AGTTGTCCTGGGAAATGTAA+AGG 0.527528 1_1:+65048898 Msa0036460:CDS
TCTGATTCTGGTAAAGATGC+TGG 0.527744 1_1:+65051710 Msa0036460:CDS
AGTCCAACTACACTCAGAAC+TGG 0.528241 1_1:+65048677 Msa0036460:CDS
TTACAACACAGTCTGCAAAC+AGG 0.529417 1_1:+65046215 Msa0036460:CDS
AAACCTTCGTGCTATTCCCT+GGG 0.530352 1_1:+65052750 Msa0036460:CDS
CTTGCCTCTCCTCTGACACA+AGG 0.531845 1_1:-65052975 None:intergenic
GATTTGAGCTATCTATGAAT+CGG 0.532118 1_1:+65047660 Msa0036460:CDS
TGGAAGTAAGAAAGGAACTC+TGG 0.534013 1_1:-65052646 None:intergenic
ATAAAGTTTGGAACTTGGAT+GGG 0.536672 1_1:+65047259 Msa0036460:CDS
CTACCTTGTGATCAGGTCCT+GGG 0.537445 1_1:-65048564 None:intergenic
TATGGCAGACAGATGAGCTT+AGG 0.537663 1_1:+65046881 Msa0036460:CDS
GACTGAATAGCCAGATATGT+AGG 0.537677 1_1:-65051857 None:intergenic
CTAGCTTCATCAACTGGAGT+GGG 0.537880 1_1:-65046913 None:intergenic
GTAAATTTCCTCTGAGACAG+CGG 0.537885 1_1:-65048794 None:intergenic
GTTACACTGTTCCATGGCCG+TGG 0.538939 1_1:+65051809 Msa0036460:CDS
TCCGAATCGCTGCTGAACTA+GGG 0.539001 1_1:+65050820 Msa0036460:CDS
TAGAGTTGCAACCTTTGGAA+TGG 0.539927 1_1:+65049784 Msa0036460:CDS
TAGCTGCATTACAGGAATCT+GGG 0.541027 1_1:+65049889 Msa0036460:intron
CAAAGGTGGTACCAACTTCA+CGG 0.542181 1_1:-65045272 None:intergenic
TGTTCGTCGATTAATTTGTG+TGG 0.545050 1_1:-65046506 None:intergenic
GCAAGAAGGAAGAACACAAA+GGG 0.545085 1_1:+65052721 Msa0036460:CDS
CGTGTTCACAGGGTTCGTAA+AGG 0.546242 1_1:+65046111 Msa0036460:intron
GGGTGGGAGAGGTGGACGAA+GGG 0.547195 1_1:-65052542 None:intergenic
CTTCATTAAAACCATTCCAA+AGG 0.547879 1_1:-65049795 None:intergenic
AAGTTTGTGCTCGTGATTAG+TGG 0.548271 1_1:+65053039 Msa0036460:CDS
AAGGGCTTCATCATAGTACT+TGG 0.548292 1_1:-65052956 None:intergenic
CCATCACAGACCCAGGTGGT+TGG 0.550298 1_1:-65051880 None:intergenic
TATGGGTACTTATAGTGAAT+GGG 0.550472 1_1:+65049953 Msa0036460:CDS
GGAGTTGGAGCAGGTTTGAA+AGG 0.551309 1_1:+65052817 Msa0036460:CDS
GTGAAGGACCTAAGAGGTGC+TGG 0.552645 1_1:+65051508 Msa0036460:CDS
ATGAACATGAGAAATTGTTC+AGG 0.553259 1_1:+65053491 Msa0036460:three_prime_UTR
TGGAGATTCTGAAGAGGTTG+AGG 0.553888 1_1:+65053151 Msa0036460:CDS
GCATGTAATATGAGGCAAGC+AGG 0.554017 1_1:+65045586 Msa0036460:CDS
TGATGAAGCCCTTGTGTCAG+AGG 0.554453 1_1:+65052966 Msa0036460:CDS
AGATCGAGAAATGCTGATTG+AGG 0.555540 1_1:+65046707 Msa0036460:CDS
GTTCACAGGGTTCGTAAAGG+AGG 0.555920 1_1:+65046114 Msa0036460:intron
TGGCTTCGTGGAAGTAAGAA+AGG 0.556061 1_1:-65052654 None:intergenic
ATGGGATTGCTGCTGGGATG+AGG 0.557054 1_1:+65053223 Msa0036460:CDS
GGAGCAATTCCAGCAAGTTG+AGG 0.557720 1_1:-65048869 None:intergenic
TCAGCAATCATGTGGGTCTG+GGG 0.558099 1_1:+65049727 Msa0036460:intron
GGGGTGGGAGAGGTGGACGA+AGG 0.558545 1_1:-65052543 None:intergenic
CCAGTTGATGAAGCTAGAGC+TGG 0.561704 1_1:+65046919 Msa0036460:CDS
AGTTTGTGCTCGTGATTAGT+GGG 0.563717 1_1:+65053040 Msa0036460:CDS
GCTCCTTATAGAGTTGTCCT+GGG 0.565302 1_1:+65048887 Msa0036460:CDS
AATGAAGCTTGATTTACGCC+AGG 0.565768 1_1:+65049811 Msa0036460:CDS
TGGACTGATTCCAACTCTCA+TGG 0.566823 1_1:-65048173 None:intergenic
GTGTTTAACCAGCTTGTGCA+GGG 0.568664 1_1:+65046171 Msa0036460:CDS
TACAATAGACCTTATTGAGA+TGG 0.569016 1_1:+65052906 Msa0036460:CDS
ATTAAAGTTACACTGTTCCA+TGG 0.569596 1_1:+65051803 Msa0036460:CDS
TTCACTTCTATCTAGATGGA+TGG 0.571403 1_1:+65047601 Msa0036460:CDS
CTGACACGTCGTAAATAATG+AGG 0.573177 1_1:-65047099 None:intergenic
GATTCATAACAGAGGAGCAG+AGG 0.575099 1_1:-65049627 None:intergenic
GCTGCTGGGATGAGGAATAC+CGG 0.577928 1_1:+65053231 Msa0036460:CDS
TAGGTAGTCGCCCTGCAAGA+AGG 0.578256 1_1:+65052707 Msa0036460:CDS
GTTCGTCGATTAATTTGTGT+GGG 0.578693 1_1:-65046505 None:intergenic
GGGTCTGGGGTGCTAGCTGA+TGG 0.578897 1_1:+65049740 Msa0036460:CDS
CAAGAGAGCTGAAAGGAAAG+AGG 0.580073 1_1:+65050003 Msa0036460:CDS
GGTCCTGGGATGTCTAGTCT+AGG 0.580848 1_1:-65048550 None:intergenic
CCCTCTATTTGAAACCGTGA+AGG 0.582239 1_1:+65051492 Msa0036460:CDS
AAACTCCACCCTGCACAAGC+TGG 0.582588 1_1:-65046179 None:intergenic
CCGTAAATGGGATTGCTGCT+GGG 0.582637 1_1:+65053217 Msa0036460:CDS
AAGTGACTGACTTCTATTCG+TGG 0.582977 1_1:-65048193 None:intergenic
TTCGAGTTTGTCAACAAAGG+TGG 0.583706 1_1:-65045286 None:intergenic
TGTCAGCAATGCTTTAAAGA+AGG 0.584116 1_1:+65047116 Msa0036460:CDS
ATATAGTGGAGCAGTCACTC+TGG 0.585383 1_1:+65047067 Msa0036460:CDS
GTTCCCAAGCAGCAGTGAAG+CGG 0.586086 1_1:-65051733 None:intergenic
TCCCATGAACCTGTTGCAGG+TGG 0.586186 1_1:+65053131 Msa0036460:CDS
CCTTCACGGTTTCAAATAGA+GGG 0.586828 1_1:-65051492 None:intergenic
AGCAGAATAATAGGAGCTTG+AGG 0.589386 1_1:+65053076 Msa0036460:CDS
GTTACTGATACTTTAAGACT+GGG 0.590423 1_1:-65048704 None:intergenic
ACAAGTTCAGAAAATTCCAA+TGG 0.590563 1_1:+65048725 Msa0036460:CDS
TTGCCTCTCCTCTGACACAA+GGG 0.590774 1_1:-65052974 None:intergenic
AAATCCAAACGTTACCGCAA+AGG 0.593471 1_1:+65047297 Msa0036460:CDS
CTATTCAGTCCCAACCACCT+GGG 0.594998 1_1:+65051870 Msa0036460:CDS
TTCACAGGGTTCGTAAAGGA+GGG 0.596243 1_1:+65046115 Msa0036460:intron
GCAAGCAGGTATAGTGAACA+TGG 0.596263 1_1:+65045600 Msa0036460:CDS
AGCTTGAGAGAAGCCGTAGA+CGG 0.598721 1_1:+65049526 Msa0036460:intron
ACTGAATAGCCAGATATGTA+GGG 0.599957 1_1:-65051856 None:intergenic
CCAACCACCTGGGTCTGTGA+TGG 0.600411 1_1:+65051880 Msa0036460:CDS
GGTTCTTAATGACGTGCTCG+CGG 0.600425 1_1:-65051567 None:intergenic
CGTGGAGGCAGTATTGGTCG+AGG 0.601373 1_1:+65051827 Msa0036460:CDS
CTGTGTTGTAAAGATCATCC+GGG 0.602908 1_1:-65046203 None:intergenic
GAAACCGTGAAGGACCTAAG+AGG 0.603322 1_1:+65051502 Msa0036460:CDS
TCTAGCTTCATCAACTGGAG+TGG 0.604729 1_1:-65046914 None:intergenic
AAATTTACAGAATCCCAGAC+AGG 0.606640 1_1:+65048809 Msa0036460:CDS
AAGTTTGGAACTTGGATGGG+AGG 0.608594 1_1:+65047262 Msa0036460:CDS
TCTTTCGAGTTTGTCAACAA+AGG 0.610094 1_1:-65045289 None:intergenic
TGGATGGGAGGTGATAGAGA+TGG 0.610576 1_1:+65047274 Msa0036460:CDS
GAACCACAATGGACATCAAG+AGG 0.612446 1_1:+65051585 Msa0036460:CDS
CTAGTCAACCGCTGTCTCAG+AGG 0.619194 1_1:+65048786 Msa0036460:CDS
CATGTCTTCAGCAATCATGT+GGG 0.620570 1_1:+65049720 Msa0036460:intron
CATCCCAGGACCTGATCACA+AGG 0.620809 1_1:+65048561 Msa0036460:CDS
GTTCCTACTTACGTTCCACC+AGG 0.621553 1_1:-65051064 None:intergenic
GCTGTTTCATAATAATCCAA+AGG 0.621583 1_1:-65049588 None:intergenic
GCACCTCTTGATGTCCATTG+TGG 0.622223 1_1:-65051588 None:intergenic
TCAGAGGAGAGGCAAGAACT+CGG 0.623021 1_1:+65052982 Msa0036460:CDS
TCCATACTAACAGGAACTAG+TGG 0.624015 1_1:-65050026 None:intergenic
CCAGCAAGTTGAGGGAGCTG+TGG 0.625144 1_1:-65048860 None:intergenic
CTCGACCAATACTGCCTCCA+CGG 0.625263 1_1:-65051826 None:intergenic
GGAACTTTACAAAGCTCAGG+AGG 0.626662 1_1:+65051751 Msa0036460:CDS
TTTATGGGAGTGCAAGTCAG+TGG 0.628326 1_1:-65047241 None:intergenic
TGTTGACTGGTGTGTTAAAG+GGG 0.628844 1_1:-65044981 None:intergenic
CGAGCAGGGAGAAATGGTAG+AGG 0.629375 1_1:+65052450 Msa0036460:CDS
ACACTTCGGTCTACCGAGCA+GGG 0.629832 1_1:+65052436 Msa0036460:CDS
GAGCTTGGCTTCCTGAACAT+AGG 0.629879 1_1:+65052688 Msa0036460:CDS
TTGAGTCCAAGCAAATACCC+AGG 0.630631 1_1:-65052767 None:intergenic
AAGCCCTTGTGTCAGAGGAG+AGG 0.630970 1_1:+65052971 Msa0036460:CDS
GGCAATTATTCATACACTCG+AGG 0.633269 1_1:-65050877 None:intergenic
TTTCTTAATTAATAGGACGG+TGG 0.636114 1_1:+65048644 Msa0036460:intron
ACTAGTTCCTGTTAGTATGG+AGG 0.640325 1_1:+65050028 Msa0036460:CDS
TTCTTAACAAGAGAGCTGAA+AGG 0.641838 1_1:+65049996 Msa0036460:CDS
TTGGGAAGAGCATGTCCTGG+TGG 0.644240 1_1:+65051049 Msa0036460:CDS
CATCCTAGACTAGACATCCC+AGG 0.647255 1_1:+65048547 Msa0036460:CDS
ACGGTTAGAACTTCTTCTTG+AGG 0.647683 1_1:+65049545 Msa0036460:CDS
TCATAGATAGCTCAAATCTG+AGG 0.648141 1_1:-65047655 None:intergenic
CGAGGCCATAGATATCACAT+AGG 0.648602 1_1:-65050859 None:intergenic
GTATAGCTGAAACTCACCAT+AGG 0.648779 1_1:+65045725 Msa0036460:CDS
TAACCTACCATCACAGACCC+AGG 0.649354 1_1:-65051887 None:intergenic
TTATGTGTACCAGCAAAAGA+GGG 0.650285 1_1:-65048246 None:intergenic
GGTTGACTAGAGTTGTAAGA+GGG 0.652302 1_1:-65048773 None:intergenic
GTGTATTGCAGGGAACACTT+CGG 0.652546 1_1:+65052422 Msa0036460:intron
TCTGTAAAAGCTCTACTGCA+AGG 0.652755 1_1:-65050997 None:intergenic
GAATTGGGAAGAGCATGTCC+TGG 0.653296 1_1:+65051046 Msa0036460:CDS
TGCAAGAAGGAAGAACACAA+AGG 0.657542 1_1:+65052720 Msa0036460:CDS
TTTAACCAGCTTGTGCAGGG+TGG 0.657609 1_1:+65046174 Msa0036460:CDS
ACACTGTTCCATGGCCGTGG+AGG 0.658097 1_1:+65051812 Msa0036460:CDS
CACGTCATTAAGAACCACAA+TGG 0.667175 1_1:+65051574 Msa0036460:CDS
TGAGTCCAAGCAAATACCCA+GGG 0.675293 1_1:-65052766 None:intergenic
AGAATAATAGGAGCTTGAGG+AGG 0.677598 1_1:+65053079 Msa0036460:CDS
AGTTGTCTAACAGCTATCTG+TGG 0.683037 1_1:-65052487 None:intergenic
TGCAGGTGGAGATTCTGAAG+AGG 0.686065 1_1:+65053145 Msa0036460:CDS
GTACCAGAGATTCATAACAG+AGG 0.693986 1_1:-65049635 None:intergenic
GGAGGCAGTATTGGTCGAGG+CGG 0.705601 1_1:+65051830 Msa0036460:CDS
TCAAACAAAGAAGCGACACG+TGG 0.707386 1_1:-65045047 None:intergenic
TGTGTTGTAAAGATCATCCG+GGG 0.722012 1_1:-65046202 None:intergenic
CCTACCATCACAGACCCAGG+TGG 0.773370 1_1:-65051884 None:intergenic
ATACCCAGGGAATAGCACGA+AGG 0.786673 1_1:-65052753 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAAAAAAAAAAAA+TGG - chr1_1:65051933-65051952 None:intergenic 0.0%
!!! ACAATCATTTTTTTTTTTTT+TGG + chr1_1:65045069-65045088 Msa0036460:five_prime_UTR 10.0%
!! AAAAGAAAGTAATAATAATT+TGG + chr1_1:65046994-65047013 Msa0036460:intron 10.0%
!! ACAAAATAGAATTTATATTA+AGG - chr1_1:65048458-65048477 None:intergenic 10.0%
!!! TGTATATTTTCTTAATTAAT+AGG + chr1_1:65048637-65048656 Msa0036460:intron 10.0%
!! TTCAATTTAACTATAAAAAA+AGG + chr1_1:65049238-65049257 Msa0036460:intron 10.0%
!! TCAATTTAACTATAAAAAAA+GGG + chr1_1:65049239-65049258 Msa0036460:intron 10.0%
!!! ATTCATTTAATTTTATGTTA+TGG + chr1_1:65051625-65051644 Msa0036460:intron 10.0%
!! AATAAAGAAGAAAAACATTA+AGG - chr1_1:65046374-65046393 None:intergenic 15.0%
!!! TAATGTTTTTCTTCTTTATT+TGG + chr1_1:65046374-65046393 Msa0036460:intron 15.0%
!! TAAAAAAATGTAAAACAAAC+TGG - chr1_1:65046443-65046462 None:intergenic 15.0%
!!! TATTTTCTTAATTAATAGGA+CGG + chr1_1:65048641-65048660 Msa0036460:intron 15.0%
!! TTATAGTTAAATTGAAAAGA+TGG - chr1_1:65049234-65049253 None:intergenic 15.0%
!! TCATATTTATCATTAAAAGA+TGG - chr1_1:65050172-65050191 None:intergenic 15.0%
!! TTCTAAGCAAAAATATAAAA+AGG - chr1_1:65050401-65050420 None:intergenic 15.0%
!! ACATAAAATTAAATGAATCT+CGG - chr1_1:65051623-65051642 None:intergenic 15.0%
!! TATTATAAATTTGTATATGC+AGG + chr1_1:65051673-65051692 Msa0036460:intron 15.0%
!!! TTTTTCTTCTTTATTTGGAA+TGG + chr1_1:65046379-65046398 Msa0036460:intron 20.0%
!!! TTTTTTATTTTTGTTGCTTC+AGG + chr1_1:65046456-65046475 Msa0036460:intron 20.0%
!!! CATTCCATTGAATTTTTTAA+TGG - chr1_1:65046581-65046600 None:intergenic 20.0%
!! TTATCTGTTTAACTATTAAG+TGG + chr1_1:65046796-65046815 Msa0036460:intron 20.0%
!! TTAAACATTGACATAACAAT+AGG - chr1_1:65047407-65047426 None:intergenic 20.0%
!!! CAAATATTTTGTTCAACTTT+GGG + chr1_1:65047533-65047552 Msa0036460:intron 20.0%
!!! AAAGTATTAGCACAAAAAAT+TGG + chr1_1:65047954-65047973 Msa0036460:intron 20.0%
!! CAAAAAATTGGAATTAAGAA+TGG + chr1_1:65047966-65047985 Msa0036460:intron 20.0%
!! ACATTTAAATCAAAGAGATA+TGG - chr1_1:65048314-65048333 None:intergenic 20.0%
!!! TATCTTTTTCATGTAGAAAA+TGG + chr1_1:65048514-65048533 Msa0036460:intron 20.0%
!! AAATTATACTTGCATGTTAT+TGG + chr1_1:65049018-65049037 Msa0036460:intron 20.0%
!! AATGCATGCATTTATTATAA+TGG - chr1_1:65049497-65049516 None:intergenic 20.0%
!! TGATAATAAATACACCAAAA+TGG - chr1_1:65050288-65050307 None:intergenic 20.0%
!!! AATTAATGAGACTTTCTTTT+TGG + chr1_1:65050311-65050330 Msa0036460:intron 20.0%
!!! TAAACAATAAACATCCATTT+TGG - chr1_1:65050347-65050366 None:intergenic 20.0%
!! AGCAAAAATATAAAAAGGAT+TGG - chr1_1:65050396-65050415 None:intergenic 20.0%
!!! TTTTAGCTTTTCAATATAAC+TGG - chr1_1:65050479-65050498 None:intergenic 20.0%
!!! ATTGGTATCTTGATTTTATT+AGG + chr1_1:65050764-65050783 Msa0036460:intron 20.0%
!! AAATTGTAGTCATAATTTCA+AGG - chr1_1:65050904-65050923 None:intergenic 20.0%
!! AATAAGCTATTTATCAAAAC+AGG - chr1_1:65051170-65051189 None:intergenic 20.0%
!!! AGTTGTTTTATAAGTCATAT+TGG + chr1_1:65051302-65051321 Msa0036460:intron 20.0%
!!! TAATTTTTTTGGTACATCAA+TGG + chr1_1:65051996-65052015 Msa0036460:intron 20.0%
!!! CAATAATCTTAAGAACTTTT+AGG + chr1_1:65052215-65052234 Msa0036460:intron 20.0%
!! TAAAATCAAATTCATAGTTG+AGG - chr1_1:65052299-65052318 None:intergenic 20.0%
!!! TGAATAGTTTGTTTTATGTT+AGG + chr1_1:65053308-65053327 Msa0036460:three_prime_UTR 20.0%
! CATGAAAAGTAAAAAAAGTG+GGG - chr1_1:65045381-65045400 None:intergenic 25.0%
! CCATGAAAAGTAAAAAAAGT+GGG - chr1_1:65045382-65045401 None:intergenic 25.0%
!!! CCACTTTTTTTACTTTTCAT+GGG + chr1_1:65045380-65045399 Msa0036460:intron 25.0%
!!! CACTTTTTTTACTTTTCATG+GGG + chr1_1:65045381-65045400 Msa0036460:intron 25.0%
!!! GATGTTCCTATTTTTGTTTT+TGG + chr1_1:65045557-65045576 Msa0036460:intron 25.0%
! AGTCATTATCTTACTATGAT+GGG + chr1_1:65045703-65045722 Msa0036460:CDS 25.0%
!! TACTTTCCAAATTTCAGTTT+TGG + chr1_1:65045798-65045817 Msa0036460:intron 25.0%
! GACATGAAAAGAACAAAAAA+TGG - chr1_1:65046242-65046261 None:intergenic 25.0%
! ACAATTTCCAAAAAAATGCA+AGG - chr1_1:65046323-65046342 None:intergenic 25.0%
!! TGTGAGTATTTTACTTTGTT+TGG + chr1_1:65046555-65046574 Msa0036460:intron 25.0%
! TTGGCCATTAAAAAATTCAA+TGG + chr1_1:65046574-65046593 Msa0036460:intron 25.0%
! CATGATGACATATGAAAATA+CGG - chr1_1:65046833-65046852 None:intergenic 25.0%
! TTTCATATGTCATCATGATT+TGG + chr1_1:65046836-65046855 Msa0036460:intron 25.0%
!! TATCAAGTATTGTATATGTC+AGG + chr1_1:65046955-65046974 Msa0036460:intron 25.0%
!!! GTTTTATTTGTATTTCTCAC+AGG + chr1_1:65047039-65047058 Msa0036460:intron 25.0%
! TTTATGAATACTAGTAACTG+AGG + chr1_1:65047369-65047388 Msa0036460:intron 25.0%
! TTATGAATACTAGTAACTGA+GGG + chr1_1:65047370-65047389 Msa0036460:intron 25.0%
!!! TTTCTTTCGTAGTTTTGTTA+TGG + chr1_1:65047435-65047454 Msa0036460:intron 25.0%
!!! TTCTTTCGTAGTTTTGTTAT+GGG + chr1_1:65047436-65047455 Msa0036460:intron 25.0%
! TGATGATATTATTCAAGTAC+AGG - chr1_1:65047506-65047525 None:intergenic 25.0%
! CCAAAGTTGAACAAAATATT+TGG - chr1_1:65047535-65047554 None:intergenic 25.0%
!! CCAAATATTTTGTTCAACTT+TGG + chr1_1:65047532-65047551 Msa0036460:intron 25.0%
!! TGTCTGTTGAATTTTACTTT+TGG + chr1_1:65047729-65047748 Msa0036460:intron 25.0%
! TTGCACGAGAAATAATTATT+AGG + chr1_1:65048420-65048439 Msa0036460:intron 25.0%
! TATACATTATATAGCATGCT+AGG - chr1_1:65048623-65048642 None:intergenic 25.0%
!!! ACTTTTTAAGTACTAATCAC+CGG - chr1_1:65048948-65048967 None:intergenic 25.0%
!! CAAATCATTTGAAGCATTTA+CGG - chr1_1:65049100-65049119 None:intergenic 25.0%
! AGTTACAACATATTTGGATA+TGG + chr1_1:65049935-65049954 Msa0036460:CDS 25.0%
! GTTACAACATATTTGGATAT+GGG + chr1_1:65049936-65049955 Msa0036460:CDS 25.0%
!! TTGGAATTAGTTTACCAAAA+TGG + chr1_1:65050330-65050349 Msa0036460:intron 25.0%
! ACATCAAAATTAGATATGTG+TGG - chr1_1:65050456-65050475 None:intergenic 25.0%
! ATCAGACTAATTGAAAGAAA+GGG - chr1_1:65051089-65051108 None:intergenic 25.0%
!! TTCAATTAGTCTGATCAAAA+TGG + chr1_1:65051094-65051113 Msa0036460:intron 25.0%
! ACCAACACTTATTATGATAA+GGG + chr1_1:65051203-65051222 Msa0036460:intron 25.0%
! ACTTTCACAATACAGATATA+GGG - chr1_1:65051433-65051452 None:intergenic 25.0%
! AACTTTCACAATACAGATAT+AGG - chr1_1:65051434-65051453 None:intergenic 25.0%
! TCTTATGACATGTTTACATT+AGG + chr1_1:65051458-65051477 Msa0036460:intron 25.0%
! AGTCTATTGATAAAAGTTTC+CGG - chr1_1:65051543-65051562 None:intergenic 25.0%
! AAATTTGTATATGCAGGTTA+TGG + chr1_1:65051679-65051698 Msa0036460:intron 25.0%
! GTAAATAAGTGACAAACATT+TGG + chr1_1:65052097-65052116 Msa0036460:intron 25.0%
!!! AAACTGTTTTGGTTGAATTT+TGG + chr1_1:65052184-65052203 Msa0036460:intron 25.0%
!!! GAGGATTTAATTTGATTATC+AGG - chr1_1:65052280-65052299 None:intergenic 25.0%
! TAAAAGCAATGTACAAAGAA+TGG + chr1_1:65052869-65052888 Msa0036460:CDS 25.0%
!! TCTATTGTACTTTGAAAGAA+AGG - chr1_1:65052895-65052914 None:intergenic 25.0%
! CTTCTGAACAACTATAATAA+TGG + chr1_1:65053263-65053282 Msa0036460:three_prime_UTR 25.0%
!!! CCCACTTTTTTTACTTTTCA+TGG + chr1_1:65045379-65045398 Msa0036460:intron 30.0%
CCCATGAAAAGTAAAAAAAG+TGG - chr1_1:65045383-65045402 None:intergenic 30.0%
! TTTTGCTCTGTTTCCTTTTA+TGG + chr1_1:65045440-65045459 Msa0036460:intron 30.0%
! TTTGCTCTGTTTCCTTTTAT+GGG + chr1_1:65045441-65045460 Msa0036460:intron 30.0%
AAAAAGCAAAACCCCATAAA+AGG - chr1_1:65045456-65045475 None:intergenic 30.0%
! TAGATTTTCACATTCAGCAA+GGG - chr1_1:65045480-65045499 None:intergenic 30.0%
! ATAGATTTTCACATTCAGCA+AGG - chr1_1:65045481-65045500 None:intergenic 30.0%
ACTCTGCCAAAAACAAAAAT+AGG - chr1_1:65045566-65045585 None:intergenic 30.0%
CAGTCATTATCTTACTATGA+TGG + chr1_1:65045702-65045721 Msa0036460:CDS 30.0%
CACCATAGGTAAATAATCTA+CGG + chr1_1:65045739-65045758 Msa0036460:intron 30.0%
CACTAACTCTGATTATTTGT+TGG + chr1_1:65045765-65045784 Msa0036460:intron 30.0%
!!! TCCAAATTTCAGTTTTGGAT+TGG + chr1_1:65045803-65045822 Msa0036460:intron 30.0%
CTTTCATAAGTTCTCATAAC+CGG - chr1_1:65045868-65045887 None:intergenic 30.0%
!!! TCACCAGCTGTTTTTATTTT+CGG + chr1_1:65045903-65045922 Msa0036460:intron 30.0%
!!! GTTTTTTTCATGAGCTATCT+TGG - chr1_1:65045947-65045966 None:intergenic 30.0%
AATTAGCTGCTTATAGCATA+AGG - chr1_1:65046034-65046053 None:intergenic 30.0%
ATTAAGCTGTTTATCCAAAC+AGG + chr1_1:65046051-65046070 Msa0036460:intron 30.0%
TTAAGCTGTTTATCCAAACA+GGG + chr1_1:65046052-65046071 Msa0036460:intron 30.0%
CATGTCTATCTACATATGTA+TGG + chr1_1:65046256-65046275 Msa0036460:intron 30.0%
!! GCTTTTTCCTTGCATTTTTT+TGG + chr1_1:65046313-65046332 Msa0036460:intron 30.0%
!!! TTTATTTTTGTTGCTTCAGG+AGG + chr1_1:65046459-65046478 Msa0036460:intron 30.0%
AAAAATCACTGTATTGTGAG+AGG + chr1_1:65046765-65046784 Msa0036460:intron 30.0%
!! ATATGTCATCATGATTTGGT+AGG + chr1_1:65046840-65046859 Msa0036460:intron 30.0%
TGAGAGAGATAACTTCAATA+TGG + chr1_1:65046863-65046882 Msa0036460:CDS 30.0%
ATCCAAGTTCCAAACTTTAT+GGG - chr1_1:65047259-65047278 None:intergenic 30.0%
! ATAAAGTTTGGAACTTGGAT+GGG + chr1_1:65047259-65047278 Msa0036460:CDS 30.0%
!!! TCTTTCGTAGTTTTGTTATG+GGG + chr1_1:65047437-65047456 Msa0036460:intron 30.0%
GATTTGAGCTATCTATGAAT+CGG + chr1_1:65047660-65047679 Msa0036460:CDS 30.0%
TCGAAGTAACAAGATTGAAT+TGG - chr1_1:65047887-65047906 None:intergenic 30.0%
! TACTTTAGAAGAAAGATGTG+AGG - chr1_1:65047940-65047959 None:intergenic 30.0%
AATTGGAATTAAGAATGGAG+AGG + chr1_1:65047971-65047990 Msa0036460:intron 30.0%
ATTGGAATTAAGAATGGAGA+GGG + chr1_1:65047972-65047991 Msa0036460:intron 30.0%
CATAATTAGAAAATACTCCG+AGG - chr1_1:65048079-65048098 None:intergenic 30.0%
CAGAAAGTCAAAAATATCTG+AGG - chr1_1:65048352-65048371 None:intergenic 30.0%
TTTCTTAATTAATAGGACGG+TGG + chr1_1:65048644-65048663 Msa0036460:intron 30.0%
!! GTTACTGATACTTTAAGACT+GGG - chr1_1:65048707-65048726 None:intergenic 30.0%
!! TGTTACTGATACTTTAAGAC+TGG - chr1_1:65048708-65048727 None:intergenic 30.0%
ACAAGTTCAGAAAATTCCAA+TGG + chr1_1:65048725-65048744 Msa0036460:CDS 30.0%
AATTGAAGATGAAGAACCAT+TGG - chr1_1:65048744-65048763 None:intergenic 30.0%
!!! TATTGGTTTCTTGGCATTTT+CGG + chr1_1:65049035-65049054 Msa0036460:intron 30.0%
! CATAATTTTCTGATTGAGAC+TGG + chr1_1:65049160-65049179 Msa0036460:intron 30.0%
GATGGATAGATGTAGATTAT+TGG - chr1_1:65049216-65049235 None:intergenic 30.0%
TACAATACACCAATAATGGT+GGG - chr1_1:65049314-65049333 None:intergenic 30.0%
TGCATTATCAGAATATCTAC+TGG + chr1_1:65049412-65049431 Msa0036460:intron 30.0%
! GCTGTTTCATAATAATCCAA+AGG - chr1_1:65049591-65049610 None:intergenic 30.0%
CTTCATTAAAACCATTCCAA+AGG - chr1_1:65049798-65049817 None:intergenic 30.0%
CATGAAATATAAATCGTACC+TGG - chr1_1:65049832-65049851 None:intergenic 30.0%
TGATGCAGTTACAACATATT+TGG + chr1_1:65049929-65049948 Msa0036460:CDS 30.0%
TTAGCTGTATATCTTGTGTT+AGG + chr1_1:65050100-65050119 Msa0036460:intron 30.0%
!! CATACGAGTCTATTTTGAAA+AGG + chr1_1:65050127-65050146 Msa0036460:intron 30.0%
!! TGTCCAATTTTGATGTCATA+TGG + chr1_1:65050198-65050217 Msa0036460:intron 30.0%
TCTCCATATGACATCAAAAT+TGG - chr1_1:65050204-65050223 None:intergenic 30.0%
! CAAACATTGATAGACCATTT+TGG + chr1_1:65050271-65050290 Msa0036460:intron 30.0%
TGAGACTATTAAGAAGTGAA+TGG - chr1_1:65050625-65050644 None:intergenic 30.0%
TATTGTACTTGTTTCACTCT+CGG + chr1_1:65050679-65050698 Msa0036460:intron 30.0%
TTGTAGTCATAATTTCAAGG+TGG - chr1_1:65050901-65050920 None:intergenic 30.0%
CCATATTATTAGTGTGACTA+TGG - chr1_1:65050947-65050966 None:intergenic 30.0%
CCATAGTCACACTAATAATA+TGG + chr1_1:65050944-65050963 Msa0036460:intron 30.0%
GATCAGACTAATTGAAAGAA+AGG - chr1_1:65051090-65051109 None:intergenic 30.0%
CACCAACACTTATTATGATA+AGG + chr1_1:65051202-65051221 Msa0036460:intron 30.0%
!!! TTTGGATTGGCTTATTTTGT+GGG - chr1_1:65051406-65051425 None:intergenic 30.0%
! GGAAACTTTTATCAATAGAC+TGG + chr1_1:65051542-65051561 Msa0036460:CDS 30.0%
ATTAAAGTTACACTGTTCCA+TGG + chr1_1:65051803-65051822 Msa0036460:CDS 30.0%
ATAACCTGCTTGAAACTTAA+TGG + chr1_1:65051954-65051973 Msa0036460:intron 30.0%
!! TTTTTGGTACATCAATGGTA+TGG + chr1_1:65052001-65052020 Msa0036460:intron 30.0%
TGTTAATGGTTTCAACTTCT+AGG + chr1_1:65052057-65052076 Msa0036460:intron 30.0%
! GTGACAAACATTTGGAATAT+TGG + chr1_1:65052105-65052124 Msa0036460:intron 30.0%
! GTTTAACCATGAAACTGTTT+TGG + chr1_1:65052173-65052192 Msa0036460:intron 30.0%
ATTCAACCAAAACAGTTTCA+TGG - chr1_1:65052182-65052201 None:intergenic 30.0%
! TAAAACTTGTTCCTTAAGAC+TGG - chr1_1:65052344-65052363 None:intergenic 30.0%
GCAAAAATTTATGTTTCCCA+CGG + chr1_1:65052400-65052419 Msa0036460:intron 30.0%
TACAATAGACCTTATTGAGA+TGG + chr1_1:65052906-65052925 Msa0036460:CDS 30.0%
AGAAACTTCAGCAGAATAAT+AGG + chr1_1:65053067-65053086 Msa0036460:CDS 30.0%
! TAGGTTTGTTCAGTAAAGAT+TGG + chr1_1:65053327-65053346 Msa0036460:three_prime_UTR 30.0%
AAGATTGGTATTAGCCATTA+TGG + chr1_1:65053342-65053361 Msa0036460:three_prime_UTR 30.0%
AAACAAACCATTCACCATAA+TGG - chr1_1:65053359-65053378 None:intergenic 30.0%
!!! GAATGGTTTGTTTTGTACAT+AGG + chr1_1:65053366-65053385 Msa0036460:three_prime_UTR 30.0%
ATGAACATGAGAAATTGTTC+AGG + chr1_1:65053491-65053510 Msa0036460:three_prime_UTR 30.0%
ATTGTTCAGGCAATCAAATA+TGG + chr1_1:65053504-65053523 Msa0036460:three_prime_UTR 30.0%
TTGTTCAGGCAATCAAATAT+GGG + chr1_1:65053505-65053524 Msa0036460:three_prime_UTR 30.0%
!! TCTTTCGAGTTTGTCAACAA+AGG - chr1_1:65045292-65045311 None:intergenic 35.0%
! TTGCTCTGTTTCCTTTTATG+GGG + chr1_1:65045442-65045461 Msa0036460:intron 35.0%
! AGATTTTCACATTCAGCAAG+GGG - chr1_1:65045479-65045498 None:intergenic 35.0%
TATTACTCACGTCTGATCAA+AGG - chr1_1:65045531-65045550 None:intergenic 35.0%
AGCCGTAGATTATTTACCTA+TGG - chr1_1:65045744-65045763 None:intergenic 35.0%
GCCAATCCAAAACTGAAATT+TGG - chr1_1:65045807-65045826 None:intergenic 35.0%
AAGCCGAAAATAAAAACAGC+TGG - chr1_1:65045909-65045928 None:intergenic 35.0%
TGATTACCATTACCCTATGT+AGG - chr1_1:65046078-65046097 None:intergenic 35.0%
AACAGAAATTACGTGTTCAC+AGG + chr1_1:65046100-65046119 Msa0036460:intron 35.0%
ACAGAAATTACGTGTTCACA+GGG + chr1_1:65046101-65046120 Msa0036460:intron 35.0%
ACTGTGTTGTAAAGATCATC+CGG - chr1_1:65046207-65046226 None:intergenic 35.0%
TTAACTGATTGAAACACCAG+CGG - chr1_1:65046420-65046439 None:intergenic 35.0%
!! GTTCGTCGATTAATTTGTGT+GGG - chr1_1:65046508-65046527 None:intergenic 35.0%
!! TGTTCGTCGATTAATTTGTG+TGG - chr1_1:65046509-65046528 None:intergenic 35.0%
CACTGCAATACAAACACATT+CGG + chr1_1:65046527-65046546 Msa0036460:CDS 35.0%
! CTTCAACATGTAGCATCTTT+TGG + chr1_1:65046653-65046672 Msa0036460:intron 35.0%
ATTGTATATGTCAGGTCTTC+TGG + chr1_1:65046963-65046982 Msa0036460:intron 35.0%
TCTCACAGGTTTGAATATAG+TGG + chr1_1:65047053-65047072 Msa0036460:intron 35.0%
!! TGTCAGCAATGCTTTAAAGA+AGG + chr1_1:65047116-65047135 Msa0036460:CDS 35.0%
GGTCTATCATCTTGAATTCT+TGG + chr1_1:65047137-65047156 Msa0036460:intron 35.0%
CATCCAAGTTCCAAACTTTA+TGG - chr1_1:65047260-65047279 None:intergenic 35.0%
! CATAAAGTTTGGAACTTGGA+TGG + chr1_1:65047258-65047277 Msa0036460:CDS 35.0%
GTTAAAAAAGCTCACCTTTG+CGG - chr1_1:65047314-65047333 None:intergenic 35.0%
!!! CTTTCGTAGTTTTGTTATGG+GGG + chr1_1:65047438-65047457 Msa0036460:intron 35.0%
! TGTTTTTCTGTTTGTTCCTC+AGG + chr1_1:65047565-65047584 Msa0036460:intron 35.0%
CTGTTTCACTTCTATCTAGA+TGG + chr1_1:65047597-65047616 Msa0036460:CDS 35.0%
TTCACTTCTATCTAGATGGA+TGG + chr1_1:65047601-65047620 Msa0036460:CDS 35.0%
TGGCTATTGACCTCTATATT+CGG + chr1_1:65047621-65047640 Msa0036460:CDS 35.0%
TCATAGATAGCTCAAATCTG+AGG - chr1_1:65047658-65047677 None:intergenic 35.0%
CTAGCACATGAAATTCTAGA+AGG + chr1_1:65047704-65047723 Msa0036460:CDS 35.0%
GTCACATGATAGAAGACAAA+AGG - chr1_1:65047791-65047810 None:intergenic 35.0%
ACTTTCAACGAACAGCATTT+GGG - chr1_1:65047815-65047834 None:intergenic 35.0%
TACTTTCAACGAACAGCATT+TGG - chr1_1:65047816-65047835 None:intergenic 35.0%
! GACATAAGATTGACTTCAAC+TGG + chr1_1:65048039-65048058 Msa0036460:intron 35.0%
TTATGTGTACCAGCAAAAGA+GGG - chr1_1:65048249-65048268 None:intergenic 35.0%
ATTATGTGTACCAGCAAAAG+AGG - chr1_1:65048250-65048269 None:intergenic 35.0%
ATTTCTCGTGCAATCAGAAA+GGG - chr1_1:65048413-65048432 None:intergenic 35.0%
TATTTCTCGTGCAATCAGAA+AGG - chr1_1:65048414-65048433 None:intergenic 35.0%
! ATTCTATTTTGTCATGCACG+AGG + chr1_1:65048466-65048485 Msa0036460:intron 35.0%
AATTGATCTACCTTGTGATC+AGG - chr1_1:65048574-65048593 None:intergenic 35.0%
GTAGATCAATTCAGTGTTTG+TGG + chr1_1:65048583-65048602 Msa0036460:intron 35.0%
AAATTTACAGAATCCCAGAC+AGG + chr1_1:65048809-65048828 Msa0036460:CDS 35.0%
! CTCTAAAAGCTTCTGAAAAC+TGG - chr1_1:65048840-65048859 None:intergenic 35.0%
! GTATTGCTTCAGATTGATTC+CGG + chr1_1:65048926-65048945 Msa0036460:intron 35.0%
!! CTTGCATGTTATTGGTTTCT+TGG + chr1_1:65049026-65049045 Msa0036460:intron 35.0%
ACTATAAAAAAAGGGCAACC+CGG + chr1_1:65049247-65049266 Msa0036460:intron 35.0%
GTACAATACACCAATAATGG+TGG - chr1_1:65049315-65049334 None:intergenic 35.0%
TGCGTACAATACACCAATAA+TGG - chr1_1:65049318-65049337 None:intergenic 35.0%
CAAACCTTTCATGAAAGAGA+GGG - chr1_1:65049670-65049689 None:intergenic 35.0%
ACAAACCTTTCATGAAAGAG+AGG - chr1_1:65049671-65049690 None:intergenic 35.0%
GGAGAGTTAAATAGCAATTG+TGG - chr1_1:65049701-65049720 None:intergenic 35.0%
TTCTTAACAAGAGAGCTGAA+AGG + chr1_1:65049996-65050015 Msa0036460:CDS 35.0%
CAGAATTTATTCGTTCACTC+AGG - chr1_1:65050538-65050557 None:intergenic 35.0%
TGTGATCATTTCAATGTTCG+TGG + chr1_1:65050732-65050751 Msa0036460:intron 35.0%
TGTTCGTGGCAATTTATGAT+TGG + chr1_1:65050746-65050765 Msa0036460:intron 35.0%
AAGACTTCTTTAACATCAGC+AGG - chr1_1:65050792-65050811 None:intergenic 35.0%
TGCTGATGTTAAAGAAGTCT+TGG + chr1_1:65050791-65050810 Msa0036460:CDS 35.0%
! TGGACTTTTGCTTGTTTATC+AGG + chr1_1:65050964-65050983 Msa0036460:intron 35.0%
TCAAAAAGTTACTTGCCCAT+AGG + chr1_1:65051143-65051162 Msa0036460:intron 35.0%
CAAAAAGTTACTTGCCCATA+GGG + chr1_1:65051144-65051163 Msa0036460:intron 35.0%
TTTATCAAAACAGGCCCTAT+GGG - chr1_1:65051161-65051180 None:intergenic 35.0%
ATTTATCAAAACAGGCCCTA+TGG - chr1_1:65051162-65051181 None:intergenic 35.0%
GCCCTTATCATAATAAGTGT+TGG - chr1_1:65051207-65051226 None:intergenic 35.0%
GCTTATGTATAAGCTTGCAT+AGG + chr1_1:65051225-65051244 Msa0036460:intron 35.0%
!!! GTTTGGATTGGCTTATTTTG+TGG - chr1_1:65051407-65051426 None:intergenic 35.0%
CAAAATAAGCCAATCCAAAC+AGG + chr1_1:65051407-65051426 Msa0036460:intron 35.0%
! GACATGTTTACATTAGGTTG+CGG + chr1_1:65051464-65051483 Msa0036460:intron 35.0%
! ACATGTTTACATTAGGTTGC+GGG + chr1_1:65051465-65051484 Msa0036460:intron 35.0%
TTGTATATGCAGGTTATGGT+TGG + chr1_1:65051683-65051702 Msa0036460:intron 35.0%
ATGGTTGGATATTCTGATTC+TGG + chr1_1:65051698-65051717 Msa0036460:CDS 35.0%
ACTGAATAGCCAGATATGTA+GGG - chr1_1:65051859-65051878 None:intergenic 35.0%
CATACCATTAAGTTTCAAGC+AGG - chr1_1:65051961-65051980 None:intergenic 35.0%
GCTTGAAACTTAATGGTATG+AGG + chr1_1:65051961-65051980 Msa0036460:intron 35.0%
!!! GATGGTGGCTGTAATTTTTT+TGG + chr1_1:65051985-65052004 Msa0036460:intron 35.0%
! TGTCACTTATTTACGATCCA+AGG - chr1_1:65052091-65052110 None:intergenic 35.0%
AAATGGTAGAGGCTAAGTTT+GGG + chr1_1:65052461-65052480 Msa0036460:CDS 35.0%
! GATTTTCGTAGACTACATTG+CGG - chr1_1:65052627-65052646 None:intergenic 35.0%
! ACCTTATTGAGATGGTGTTA+GGG + chr1_1:65052914-65052933 Msa0036460:CDS 35.0%
CTTTGCTTATCACCGTAAAT+GGG + chr1_1:65053205-65053224 Msa0036460:CDS 35.0%
GTATTAGCCATTATGGTGAA+TGG + chr1_1:65053349-65053368 Msa0036460:three_prime_UTR 35.0%
! ATTAAGCTTTTCCTGCAATC+TGG + chr1_1:65053421-65053440 Msa0036460:three_prime_UTR 35.0%
! TGTTGACTGGTGTGTTAAAG+GGG - chr1_1:65044984-65045003 None:intergenic 40.0%
!! GTGTTGACTGGTGTGTTAAA+GGG - chr1_1:65044985-65045004 None:intergenic 40.0%
!! AGTGTTGACTGGTGTGTTAA+AGG - chr1_1:65044986-65045005 None:intergenic 40.0%
TACAATCATCATCGAAGCTC+TGG - chr1_1:65045218-65045237 None:intergenic 40.0%
AGAGCTTCGATGATGATTGT+AGG + chr1_1:65045217-65045236 Msa0036460:CDS 40.0%
GATGATGATTGTAGGTTGCT+TGG + chr1_1:65045225-65045244 Msa0036460:CDS 40.0%
! TTCGAGTTTGTCAACAAAGG+TGG - chr1_1:65045289-65045308 None:intergenic 40.0%
AGTGGGGTATGAAGAAAAAG+TGG - chr1_1:65045365-65045384 None:intergenic 40.0%
GTATAGCTGAAACTCACCAT+AGG + chr1_1:65045725-65045744 Msa0036460:CDS 40.0%
AACATAAGCACTTGTGTGAC+CGG + chr1_1:65045846-65045865 Msa0036460:intron 40.0%
TGTGTTGTAAAGATCATCCG+GGG - chr1_1:65046205-65046224 None:intergenic 40.0%
CTGTGTTGTAAAGATCATCC+GGG - chr1_1:65046206-65046225 None:intergenic 40.0%
TTACAACACAGTCTGCAAAC+AGG + chr1_1:65046215-65046234 Msa0036460:CDS 40.0%
! AGCTTTATAGTGACGTGCAA+TGG - chr1_1:65046296-65046315 None:intergenic 40.0%
GAATGTAATGTCTATACCGC+TGG + chr1_1:65046401-65046420 Msa0036460:intron 40.0%
TCAGCATTTCTCGATCTTCA+GGG - chr1_1:65046704-65046723 None:intergenic 40.0%
ATCAGCATTTCTCGATCTTC+AGG - chr1_1:65046705-65046724 None:intergenic 40.0%
! AGATCGAGAAATGCTGATTG+AGG + chr1_1:65046707-65046726 Msa0036460:CDS 40.0%
! AGAAATGCTGATTGAGGATC+TGG + chr1_1:65046713-65046732 Msa0036460:CDS 40.0%
CTGACACGTCGTAAATAATG+AGG - chr1_1:65047102-65047121 None:intergenic 40.0%
! CTATCCATTTTGCAGCATAC+TGG + chr1_1:65047208-65047227 Msa0036460:intron 40.0%
CTTTCCAGTATGCTGCAAAA+TGG - chr1_1:65047215-65047234 None:intergenic 40.0%
ACTTGCACTCCCATAAAGTT+TGG + chr1_1:65047247-65047266 Msa0036460:CDS 40.0%
! CTCCCATAAAGTTTGGAACT+TGG + chr1_1:65047254-65047273 Msa0036460:CDS 40.0%
AAATCCAAACGTTACCGCAA+AGG + chr1_1:65047297-65047316 Msa0036460:CDS 40.0%
GGCTATTGACCTCTATATTC+GGG + chr1_1:65047622-65047641 Msa0036460:CDS 40.0%
TATCCACTTCCCGAATATAG+AGG - chr1_1:65047634-65047653 None:intergenic 40.0%
!! TGGCTTTGTGAATGTTTCCT+CGG + chr1_1:65048059-65048078 Msa0036460:intron 40.0%
TAGCCACATCTAAGAGTTGA+TGG + chr1_1:65048113-65048132 Msa0036460:intron 40.0%
TGACCATCAACTCTTAGATG+TGG - chr1_1:65048119-65048138 None:intergenic 40.0%
! AAGTGACTGACTTCTATTCG+TGG - chr1_1:65048196-65048215 None:intergenic 40.0%
TCGACAGATCATTTGAGTGT+CGG - chr1_1:65048383-65048402 None:intergenic 40.0%
TTTCTCGTGCAATCAGAAAG+GGG - chr1_1:65048412-65048431 None:intergenic 40.0%
GGTTGACTAGAGTTGTAAGA+GGG - chr1_1:65048776-65048795 None:intergenic 40.0%
!! GTAAATTTCCTCTGAGACAG+CGG - chr1_1:65048797-65048816 None:intergenic 40.0%
AAAACTGGACTTTCCTGTCT+GGG - chr1_1:65048825-65048844 None:intergenic 40.0%
TTTCCCAGGACAACTCTATA+AGG - chr1_1:65048893-65048912 None:intergenic 40.0%
AGTTGTCCTGGGAAATGTAA+AGG + chr1_1:65048898-65048917 Msa0036460:CDS 40.0%
CCTTATCCTTTACATTTCCC+AGG - chr1_1:65048907-65048926 None:intergenic 40.0%
CCTGGGAAATGTAAAGGATA+AGG + chr1_1:65048904-65048923 Msa0036460:CDS 40.0%
ACGGAAGATGTAGAAATGCA+AGG - chr1_1:65049081-65049100 None:intergenic 40.0%
CCTGTGTAAAAAACAGGGTA+AGG - chr1_1:65049342-65049361 None:intergenic 40.0%
!!! CCTTACCCTGTTTTTTACAC+AGG + chr1_1:65049339-65049358 Msa0036460:intron 40.0%
!!! TACCCTGTTTTTTACACAGG+AGG + chr1_1:65049342-65049361 Msa0036460:intron 40.0%
AGCCTCCTGTGTAAAAAACA+GGG - chr1_1:65049347-65049366 None:intergenic 40.0%
! GAAGAAGTTCTAACCGTCTA+CGG - chr1_1:65049542-65049561 None:intergenic 40.0%
ACGGTTAGAACTTCTTCTTG+AGG + chr1_1:65049545-65049564 Msa0036460:CDS 40.0%
TGCATGTGACTATGATCCTT+TGG + chr1_1:65049572-65049591 Msa0036460:CDS 40.0%
GTACCAGAGATTCATAACAG+AGG - chr1_1:65049638-65049657 None:intergenic 40.0%
CATGTCTTCAGCAATCATGT+GGG + chr1_1:65049720-65049739 Msa0036460:intron 40.0%
ATTCGTAGAGTTGCAACCTT+TGG + chr1_1:65049779-65049798 Msa0036460:CDS 40.0%
! TAGAGTTGCAACCTTTGGAA+TGG + chr1_1:65049784-65049803 Msa0036460:CDS 40.0%
AATGAAGCTTGATTTACGCC+AGG + chr1_1:65049811-65049830 Msa0036460:CDS 40.0%
TAGCTGCATTACAGGAATCT+GGG + chr1_1:65049889-65049908 Msa0036460:intron 40.0%
TCCATACTAACAGGAACTAG+TGG - chr1_1:65050029-65050048 None:intergenic 40.0%
ACTAGTTCCTGTTAGTATGG+AGG + chr1_1:65050028-65050047 Msa0036460:CDS 40.0%
! ACTTGTTTCTCGAAATGCAG+AGG + chr1_1:65050498-65050517 Msa0036460:intron 40.0%
! GAACTAGGGAGTGATTTTCT+AGG + chr1_1:65050834-65050853 Msa0036460:CDS 40.0%
AGGAGCCTATGTGATATCTA+TGG + chr1_1:65050854-65050873 Msa0036460:CDS 40.0%
GGCAATTATTCATACACTCG+AGG - chr1_1:65050880-65050899 None:intergenic 40.0%
TCTGTAAAAGCTCTACTGCA+AGG - chr1_1:65051000-65051019 None:intergenic 40.0%
! TGCAGTAGAGCTTTTACAGA+AGG + chr1_1:65051000-65051019 Msa0036460:CDS 40.0%
! AGCTTTTACAGAAGGATGCA+CGG + chr1_1:65051008-65051027 Msa0036460:CDS 40.0%
CTTGCTGCTATTGGAGAATT+GGG + chr1_1:65051031-65051050 Msa0036460:CDS 40.0%
ATACAGATATAGGGCCTGTT+TGG - chr1_1:65051424-65051443 None:intergenic 40.0%
CCTTCACGGTTTCAAATAGA+GGG - chr1_1:65051495-65051514 None:intergenic 40.0%
TCCTTCACGGTTTCAAATAG+AGG - chr1_1:65051496-65051515 None:intergenic 40.0%
CACGTCATTAAGAACCACAA+TGG + chr1_1:65051574-65051593 Msa0036460:CDS 40.0%
TCTGATTCTGGTAAAGATGC+TGG + chr1_1:65051710-65051729 Msa0036460:CDS 40.0%
TTGGGAACTTTACAAAGCTC+AGG + chr1_1:65051748-65051767 Msa0036460:CDS 40.0%
GTAGCTGCTTGCAATGATTA+TGG + chr1_1:65051779-65051798 Msa0036460:CDS 40.0%
GACTGAATAGCCAGATATGT+AGG - chr1_1:65051860-65051879 None:intergenic 40.0%
AACTTAATGGTATGAGGCGA+TGG + chr1_1:65051967-65051986 Msa0036460:intron 40.0%
!! ATGAGAGGTTGGTGTGTTAA+TGG + chr1_1:65052043-65052062 Msa0036460:intron 40.0%
!! ACTTCTAGGACTTGATTCCT+TGG + chr1_1:65052071-65052090 Msa0036460:intron 40.0%
! GAGTCTTATGACCAGTCTTA+AGG + chr1_1:65052330-65052349 Msa0036460:intron 40.0%
GAAATGGTAGAGGCTAAGTT+TGG + chr1_1:65052460-65052479 Msa0036460:CDS 40.0%
AGTTGTCTAACAGCTATCTG+TGG - chr1_1:65052490-65052509 None:intergenic 40.0%
! ACTACGCCAATTTTCATCTC+GGG - chr1_1:65052566-65052585 None:intergenic 40.0%
! GACTACGCCAATTTTCATCT+CGG - chr1_1:65052567-65052586 None:intergenic 40.0%
TGAAAATTGGCGTAGTCTCA+TGG + chr1_1:65052570-65052589 Msa0036460:CDS 40.0%
TGGAAGTAAGAAAGGAACTC+TGG - chr1_1:65052649-65052668 None:intergenic 40.0%
TTGTGTTCTTCCTTCTTGCA+GGG - chr1_1:65052720-65052739 None:intergenic 40.0%
TTTGTGTTCTTCCTTCTTGC+AGG - chr1_1:65052721-65052740 None:intergenic 40.0%
TGCAAGAAGGAAGAACACAA+AGG + chr1_1:65052720-65052739 Msa0036460:CDS 40.0%
GCAAGAAGGAAGAACACAAA+GGG + chr1_1:65052721-65052740 Msa0036460:CDS 40.0%
AGGAAGAACACAAAGGGAAT+TGG + chr1_1:65052727-65052746 Msa0036460:CDS 40.0%
!! TTGAAAGGTGCTTGTGAGAA+AGG + chr1_1:65052832-65052851 Msa0036460:CDS 40.0%
GACCTTATTGAGATGGTGTT+AGG + chr1_1:65052913-65052932 Msa0036460:CDS 40.0%
TCCCTAACACCATCTCAATA+AGG - chr1_1:65052918-65052937 None:intergenic 40.0%
AAGGGCTTCATCATAGTACT+TGG - chr1_1:65052959-65052978 None:intergenic 40.0%
AAGTTTGTGCTCGTGATTAG+TGG + chr1_1:65053039-65053058 Msa0036460:CDS 40.0%
AGTTTGTGCTCGTGATTAGT+GGG + chr1_1:65053040-65053059 Msa0036460:CDS 40.0%
AGCAGAATAATAGGAGCTTG+AGG + chr1_1:65053076-65053095 Msa0036460:CDS 40.0%
AGAATAATAGGAGCTTGAGG+AGG + chr1_1:65053079-65053098 Msa0036460:CDS 40.0%
AGGTTCATGGGATTGAGAAA+TGG - chr1_1:65053123-65053142 None:intergenic 40.0%
! GCAAAGCATCTCTGAGTTTA+AGG - chr1_1:65053191-65053210 None:intergenic 40.0%
GCTTTGCTTATCACCGTAAA+TGG + chr1_1:65053204-65053223 Msa0036460:CDS 40.0%
TTGAGAACTTACCAGATTGC+AGG - chr1_1:65053435-65053454 None:intergenic 40.0%
!! CTTAGTGTAGCAGTGTTGAC+TGG - chr1_1:65044997-65045016 None:intergenic 45.0%
TCAAACAAAGAAGCGACACG+TGG - chr1_1:65045050-65045069 None:intergenic 45.0%
GACATTCTTCACCGTGAAGT+TGG + chr1_1:65045261-65045280 Msa0036460:CDS 45.0%
CAAAGGTGGTACCAACTTCA+CGG - chr1_1:65045275-65045294 None:intergenic 45.0%
!! TGAAGCACTGACACATACAC+CGG + chr1_1:65045500-65045519 Msa0036460:intron 45.0%
GGCAGAGTGCATGTAATATG+AGG + chr1_1:65045578-65045597 Msa0036460:intron 45.0%
GCATGTAATATGAGGCAAGC+AGG + chr1_1:65045586-65045605 Msa0036460:CDS 45.0%
GCAAGCAGGTATAGTGAACA+TGG + chr1_1:65045600-65045619 Msa0036460:CDS 45.0%
TATCCAAACAGGGCCTACAT+AGG + chr1_1:65046062-65046081 Msa0036460:intron 45.0%
ATCCAAACAGGGCCTACATA+GGG + chr1_1:65046063-65046082 Msa0036460:intron 45.0%
TTCACAGGGTTCGTAAAGGA+GGG + chr1_1:65046115-65046134 Msa0036460:intron 45.0%
GGTTCGTAAAGGAGGGAATA+TGG + chr1_1:65046122-65046141 Msa0036460:CDS 45.0%
TGTGTTTAACCAGCTTGTGC+AGG + chr1_1:65046170-65046189 Msa0036460:CDS 45.0%
GTGTTTAACCAGCTTGTGCA+GGG + chr1_1:65046171-65046190 Msa0036460:CDS 45.0%
TATGGCAGACAGATGAGCTT+AGG + chr1_1:65046881-65046900 Msa0036460:CDS 45.0%
!! CATCAACTGGAGTGGGTTTT+TGG - chr1_1:65046909-65046928 None:intergenic 45.0%
CTAGCTTCATCAACTGGAGT+GGG - chr1_1:65046916-65046935 None:intergenic 45.0%
! TCTAGCTTCATCAACTGGAG+TGG - chr1_1:65046917-65046936 None:intergenic 45.0%
! ATATAGTGGAGCAGTCACTC+TGG + chr1_1:65047067-65047086 Msa0036460:CDS 45.0%
! TTTATGGGAGTGCAAGTCAG+TGG - chr1_1:65047244-65047263 None:intergenic 45.0%
! AAGTTTGGAACTTGGATGGG+AGG + chr1_1:65047262-65047281 Msa0036460:CDS 45.0%
! AATCGCTGATAGTGAGCACT+TGG - chr1_1:65047343-65047362 None:intergenic 45.0%
!!! TCGTAGTTTTGTTATGGGGG+TGG + chr1_1:65047441-65047460 Msa0036460:intron 45.0%
! GAAACAGCTTTTGTGACCTG+AGG - chr1_1:65047584-65047603 None:intergenic 45.0%
TGACCTCTATATTCGGGAAG+TGG + chr1_1:65047628-65047647 Msa0036460:CDS 45.0%
GAGATTCTTCCTAGTGCCAA+GGG + chr1_1:65047753-65047772 Msa0036460:intron 45.0%
AAGGTGAATGCTAAGTCCCT+TGG - chr1_1:65047772-65047791 None:intergenic 45.0%
! TGGACTGATTCCAACTCTCA+TGG - chr1_1:65048176-65048195 None:intergenic 45.0%
! GCTCATTTACCCTCTTTTGC+TGG + chr1_1:65048237-65048256 Msa0036460:CDS 45.0%
TCATGCACGAGGAATGATGA+GGG + chr1_1:65048477-65048496 Msa0036460:intron 45.0%
! GTTCTGAGTGTAGTTGGACT+TGG - chr1_1:65048677-65048696 None:intergenic 45.0%
AGTCCAACTACACTCAGAAC+TGG + chr1_1:65048677-65048696 Msa0036460:CDS 45.0%
!! TTGCCAGTTCTGAGTGTAGT+TGG - chr1_1:65048683-65048702 None:intergenic 45.0%
GAGTTGTAAGAGGGAGAAGA+TGG - chr1_1:65048767-65048786 None:intergenic 45.0%
CGGTTGACTAGAGTTGTAAG+AGG - chr1_1:65048777-65048796 None:intergenic 45.0%
GAAAACTGGACTTTCCTGTC+TGG - chr1_1:65048826-65048845 None:intergenic 45.0%
! GAGCAATTCCAGCAAGTTGA+GGG - chr1_1:65048871-65048890 None:intergenic 45.0%
TGCTCCTTATAGAGTTGTCC+TGG + chr1_1:65048886-65048905 Msa0036460:CDS 45.0%
GCTCCTTATAGAGTTGTCCT+GGG + chr1_1:65048887-65048906 Msa0036460:CDS 45.0%
CAGCCTCCTGTGTAAAAAAC+AGG - chr1_1:65049348-65049367 None:intergenic 45.0%
! TGAAACAGCTGACCAGCTTT+TGG + chr1_1:65049602-65049621 Msa0036460:CDS 45.0%
GATTCATAACAGAGGAGCAG+AGG - chr1_1:65049630-65049649 None:intergenic 45.0%
GCTCCTCTGTTATGAATCTC+TGG + chr1_1:65049632-65049651 Msa0036460:CDS 45.0%
CCTTTCATGAAAGAGAGGGA+AGG - chr1_1:65049666-65049685 None:intergenic 45.0%
CCTTCCCTCTCTTTCATGAA+AGG + chr1_1:65049663-65049682 Msa0036460:intron 45.0%
CCACATGATTGCTGAAGACA+TGG - chr1_1:65049722-65049741 None:intergenic 45.0%
CCATGTCTTCAGCAATCATG+TGG + chr1_1:65049719-65049738 Msa0036460:intron 45.0%
TTCAGCAATCATGTGGGTCT+GGG + chr1_1:65049726-65049745 Msa0036460:intron 45.0%
! CCTGTAATGCAGCTAGTTTC+AGG - chr1_1:65049884-65049903 None:intergenic 45.0%
CCTGAAACTAGCTGCATTAC+AGG + chr1_1:65049881-65049900 Msa0036460:intron 45.0%
CTAGCTGCATTACAGGAATC+TGG + chr1_1:65049888-65049907 Msa0036460:intron 45.0%
CAAGAGAGCTGAAAGGAAAG+AGG + chr1_1:65050003-65050022 Msa0036460:CDS 45.0%
GCCACTAGTTCCTGTTAGTA+TGG + chr1_1:65050025-65050044 Msa0036460:CDS 45.0%
TGTCTCACCTCCATACTAAC+AGG - chr1_1:65050038-65050057 None:intergenic 45.0%
TGGAATGATGCAGCAGATCA+AGG - chr1_1:65050376-65050395 None:intergenic 45.0%
CGAGGCCATAGATATCACAT+AGG - chr1_1:65050862-65050881 None:intergenic 45.0%
! GCTTGCTGCTATTGGAGAAT+TGG + chr1_1:65051030-65051049 Msa0036460:CDS 45.0%
GATATAGGGCCTGTTTGGAT+TGG - chr1_1:65051419-65051438 None:intergenic 45.0%
! CCCTCTATTTGAAACCGTGA+AGG + chr1_1:65051492-65051511 Msa0036460:CDS 45.0%
TAACTGAACCAGCACCTCTT+AGG - chr1_1:65051519-65051538 None:intergenic 45.0%
GAACCACAATGGACATCAAG+AGG + chr1_1:65051585-65051604 Msa0036460:CDS 45.0%
GGAACTTTACAAAGCTCAGG+AGG + chr1_1:65051751-65051770 Msa0036460:CDS 45.0%
TTAATGGTATGAGGCGATGG+TGG + chr1_1:65051970-65051989 Msa0036460:intron 45.0%
AACACACCAACCTCTCATGT+GGG - chr1_1:65052041-65052060 None:intergenic 45.0%
TAACACACCAACCTCTCATG+TGG - chr1_1:65052042-65052061 None:intergenic 45.0%
ATTCAGAAACGAGCTGTCAG+CGG - chr1_1:65052367-65052386 None:intergenic 45.0%
GTGTATTGCAGGGAACACTT+CGG + chr1_1:65052422-65052441 Msa0036460:intron 45.0%
! CTACGCCAATTTTCATCTCG+GGG - chr1_1:65052565-65052584 None:intergenic 45.0%
TGGCTTCGTGGAAGTAAGAA+AGG - chr1_1:65052657-65052676 None:intergenic 45.0%
! AAACCTTCGTGCTATTCCCT+GGG + chr1_1:65052750-65052769 Msa0036460:CDS 45.0%
CTATTCCCTGGGTATTTGCT+TGG + chr1_1:65052761-65052780 Msa0036460:CDS 45.0%
TGAGTCCAAGCAAATACCCA+GGG - chr1_1:65052769-65052788 None:intergenic 45.0%
TTGAGTCCAAGCAAATACCC+AGG - chr1_1:65052770-65052789 None:intergenic 45.0%
CCAAGCTGGAAGAACAAATC+TGG - chr1_1:65052794-65052813 None:intergenic 45.0%
! CCAGATTTGTTCTTCCAGCT+TGG + chr1_1:65052791-65052810 Msa0036460:CDS 45.0%
TTTGTTCTTCCAGCTTGGCT+CGG + chr1_1:65052796-65052815 Msa0036460:CDS 45.0%
! GCACAAACTTTTCAGCTGTC+AGG - chr1_1:65053029-65053048 None:intergenic 45.0%
TAATAGGAGCTTGAGGAGGT+TGG + chr1_1:65053083-65053102 Msa0036460:CDS 45.0%
! TGGAGATTCTGAAGAGGTTG+AGG + chr1_1:65053151-65053170 Msa0036460:CDS 45.0%
TGTTCAGAAGCAGCGTTAAC+CGG - chr1_1:65053253-65053272 None:intergenic 45.0%
!!! ATTTTTATTTTTTTTATCTA+TGG + chr1_1:65050586-65050605 Msa0036460:intron 5.0%
! CGTCTGATCAAAGGTGTGTC+CGG - chr1_1:65045522-65045541 None:intergenic 50.0%
TACCCTATGTAGGCCCTGTT+TGG - chr1_1:65046068-65046087 None:intergenic 50.0%
ACAGGGCCTACATAGGGTAA+TGG + chr1_1:65046069-65046088 Msa0036460:intron 50.0%
CGTGTTCACAGGGTTCGTAA+AGG + chr1_1:65046111-65046130 Msa0036460:intron 50.0%
GTTCACAGGGTTCGTAAAGG+AGG + chr1_1:65046114-65046133 Msa0036460:intron 50.0%
TTTAACCAGCTTGTGCAGGG+TGG + chr1_1:65046174-65046193 Msa0036460:CDS 50.0%
CGATCTTCAGGGCTAAGATC+AGG - chr1_1:65046693-65046712 None:intergenic 50.0%
! CCAGCTCTAGCTTCATCAAC+TGG - chr1_1:65046922-65046941 None:intergenic 50.0%
!! CCAGTTGATGAAGCTAGAGC+TGG + chr1_1:65046919-65046938 Msa0036460:CDS 50.0%
TGGATGGGAGGTGATAGAGA+TGG + chr1_1:65047274-65047293 Msa0036460:CDS 50.0%
CTCACCTTTGCGGTAACGTT+TGG - chr1_1:65047304-65047323 None:intergenic 50.0%
! GCTGATAGTGAGCACTTGGA+TGG - chr1_1:65047339-65047358 None:intergenic 50.0%
CGAGATTCTTCCTAGTGCCA+AGG + chr1_1:65047752-65047771 Msa0036460:intron 50.0%
ATGCTAAGTCCCTTGGCACT+AGG - chr1_1:65047765-65047784 None:intergenic 50.0%
ACGAGAATCGCCATGAGAGT+TGG + chr1_1:65048163-65048182 Msa0036460:CDS 50.0%
! GAGGGTAAATGAGCTCTAGC+TGG - chr1_1:65048231-65048250 None:intergenic 50.0%
GTCATGCACGAGGAATGATG+AGG + chr1_1:65048476-65048495 Msa0036460:intron 50.0%
CATGCACGAGGAATGATGAG+GGG + chr1_1:65048478-65048497 Msa0036460:intron 50.0%
CATCCTAGACTAGACATCCC+AGG + chr1_1:65048547-65048566 Msa0036460:CDS 50.0%
CTACCTTGTGATCAGGTCCT+GGG - chr1_1:65048567-65048586 None:intergenic 50.0%
TCTACCTTGTGATCAGGTCC+TGG - chr1_1:65048568-65048587 None:intergenic 50.0%
GGAGCAATTCCAGCAAGTTG+AGG - chr1_1:65048872-65048891 None:intergenic 50.0%
AGCTTGAGAGAAGCCGTAGA+CGG + chr1_1:65049526-65049545 Msa0036460:intron 50.0%
CTTCAGCAATCATGTGGGTC+TGG + chr1_1:65049725-65049744 Msa0036460:intron 50.0%
TCAGCAATCATGTGGGTCTG+GGG + chr1_1:65049727-65049746 Msa0036460:intron 50.0%
TTCCGAATCGCTGCTGAACT+AGG + chr1_1:65050819-65050838 Msa0036460:CDS 50.0%
TCCGAATCGCTGCTGAACTA+GGG + chr1_1:65050820-65050839 Msa0036460:CDS 50.0%
TCCCTAGTTCAGCAGCGATT+CGG - chr1_1:65050824-65050843 None:intergenic 50.0%
! GAATTGGGAAGAGCATGTCC+TGG + chr1_1:65051046-65051065 Msa0036460:CDS 50.0%
TGTCCTGGTGGAACGTAAGT+AGG + chr1_1:65051061-65051080 Msa0036460:intron 50.0%
GTTCCTACTTACGTTCCACC+AGG - chr1_1:65051067-65051086 None:intergenic 50.0%
GAAACCGTGAAGGACCTAAG+AGG + chr1_1:65051502-65051521 Msa0036460:CDS 50.0%
AGCACCTCTTAGGTCCTTCA+CGG - chr1_1:65051509-65051528 None:intergenic 50.0%
!! GAGGTGCTGGTTCAGTTATC+CGG + chr1_1:65051521-65051540 Msa0036460:CDS 50.0%
GGTTCTTAATGACGTGCTCG+CGG - chr1_1:65051570-65051589 None:intergenic 50.0%
GCACCTCTTGATGTCCATTG+TGG - chr1_1:65051591-65051610 None:intergenic 50.0%
CTATTCAGTCCCAACCACCT+GGG + chr1_1:65051870-65051889 Msa0036460:CDS 50.0%
TAACCTACCATCACAGACCC+AGG - chr1_1:65051890-65051909 None:intergenic 50.0%
TATCCAGCATCCCACATGAG+AGG + chr1_1:65052028-65052047 Msa0036460:intron 50.0%
TGTTTCCCACGGTGTATTGC+AGG + chr1_1:65052411-65052430 Msa0036460:intron 50.0%
GTTTCCCACGGTGTATTGCA+GGG + chr1_1:65052412-65052431 Msa0036460:intron 50.0%
TGTTCCCTGCAATACACCGT+GGG - chr1_1:65052419-65052438 None:intergenic 50.0%
CTCTACCATTTCTCCCTGCT+CGG - chr1_1:65052452-65052471 None:intergenic 50.0%
TCCCACCCCGAGATGAAAAT+TGG + chr1_1:65052557-65052576 Msa0036460:CDS 50.0%
! GCCAATTTTCATCTCGGGGT+GGG - chr1_1:65052561-65052580 None:intergenic 50.0%
GAGCTTGGCTTCCTGAACAT+AGG + chr1_1:65052688-65052707 Msa0036460:CDS 50.0%
! GAAACCTTCGTGCTATTCCC+TGG + chr1_1:65052749-65052768 Msa0036460:CDS 50.0%
ATACCCAGGGAATAGCACGA+AGG - chr1_1:65052756-65052775 None:intergenic 50.0%
GGAGTTGGAGCAGGTTTGAA+AGG + chr1_1:65052817-65052836 Msa0036460:CDS 50.0%
TGATGAAGCCCTTGTGTCAG+AGG + chr1_1:65052966-65052985 Msa0036460:CDS 50.0%
TTGCCTCTCCTCTGACACAA+GGG - chr1_1:65052977-65052996 None:intergenic 50.0%
TCAGAGGAGAGGCAAGAACT+CGG + chr1_1:65052982-65053001 Msa0036460:CDS 50.0%
CAATCCCATGAACCTGTTGC+AGG + chr1_1:65053128-65053147 Msa0036460:CDS 50.0%
TCCACCTGCAACAGGTTCAT+GGG - chr1_1:65053135-65053154 None:intergenic 50.0%
TCAGAATCTCCACCTGCAAC+AGG - chr1_1:65053143-65053162 None:intergenic 50.0%
! TGCAGGTGGAGATTCTGAAG+AGG + chr1_1:65053145-65053164 Msa0036460:CDS 50.0%
ACCGTAAATGGGATTGCTGC+TGG + chr1_1:65053216-65053235 Msa0036460:CDS 50.0%
CCCAGCAGCAATCCCATTTA+CGG - chr1_1:65053220-65053239 None:intergenic 50.0%
CCGTAAATGGGATTGCTGCT+GGG + chr1_1:65053217-65053236 Msa0036460:CDS 50.0%
AAACTCCACCCTGCACAAGC+TGG - chr1_1:65046182-65046201 None:intergenic 55.0%
GGAGTGCAAGTCAGTGGAAG+TGG - chr1_1:65047238-65047257 None:intergenic 55.0%
GCTCTAGCTGGAAGCTGTGT+TGG - chr1_1:65048219-65048238 None:intergenic 55.0%
GGTCCTGGGATGTCTAGTCT+AGG - chr1_1:65048553-65048572 None:intergenic 55.0%
CATCCCAGGACCTGATCACA+AGG + chr1_1:65048561-65048580 Msa0036460:CDS 55.0%
CTAGTCAACCGCTGTCTCAG+AGG + chr1_1:65048786-65048805 Msa0036460:CDS 55.0%
!! TGCGGGAGCTTTAAGTGCAC+CGG - chr1_1:65049269-65049288 None:intergenic 55.0%
TTAAAGCTCCCGCACACGCA+GGG + chr1_1:65049275-65049294 Msa0036460:intron 55.0%
! ATAATGGTGGGACCCCTTCC+CGG - chr1_1:65049302-65049321 None:intergenic 55.0%
GGAAGGGGTCCCACCATTAT+TGG + chr1_1:65049302-65049321 Msa0036460:intron 55.0%
GGAGCAGAGGTTCCAAAAGC+TGG - chr1_1:65049617-65049636 None:intergenic 55.0%
!! GATGCACGGCTTGCTGCTAT+TGG + chr1_1:65051022-65051041 Msa0036460:CDS 55.0%
! TTGGGAAGAGCATGTCCTGG+TGG + chr1_1:65051049-65051068 Msa0036460:CDS 55.0%
! GTGAAGGACCTAAGAGGTGC+TGG + chr1_1:65051508-65051527 Msa0036460:CDS 55.0%
GTTCCCAAGCAGCAGTGAAG+CGG - chr1_1:65051736-65051755 None:intergenic 55.0%
GTTACACTGTTCCATGGCCG+TGG + chr1_1:65051809-65051828 Msa0036460:CDS 55.0%
CTCGACCAATACTGCCTCCA+CGG - chr1_1:65051829-65051848 None:intergenic 55.0%
GCTATTCAGTCCCAACCACC+TGG + chr1_1:65051869-65051888 Msa0036460:CDS 55.0%
CATCACAGACCCAGGTGGTT+GGG - chr1_1:65051882-65051901 None:intergenic 55.0%
CAACCTCTCATGTGGGATGC+TGG - chr1_1:65052034-65052053 None:intergenic 55.0%
CAGCATCCCACATGAGAGGT+TGG + chr1_1:65052032-65052051 Msa0036460:intron 55.0%
GTGTTCCCTGCAATACACCG+TGG - chr1_1:65052420-65052439 None:intergenic 55.0%
AACACTTCGGTCTACCGAGC+AGG + chr1_1:65052435-65052454 Msa0036460:CDS 55.0%
ACACTTCGGTCTACCGAGCA+GGG + chr1_1:65052436-65052455 Msa0036460:CDS 55.0%
GTCTACCGAGCAGGGAGAAA+TGG + chr1_1:65052444-65052463 Msa0036460:CDS 55.0%
CGAGCAGGGAGAAATGGTAG+AGG + chr1_1:65052450-65052469 Msa0036460:CDS 55.0%
! TTTTCATCTCGGGGTGGGAG+AGG - chr1_1:65052556-65052575 None:intergenic 55.0%
! CGCCAATTTTCATCTCGGGG+TGG - chr1_1:65052562-65052581 None:intergenic 55.0%
AGGAAGCCAAGCTCTGCTTC+AGG - chr1_1:65052682-65052701 None:intergenic 55.0%
CAGGGCGACTACCTATGTTC+AGG - chr1_1:65052702-65052721 None:intergenic 55.0%
TAGGTAGTCGCCCTGCAAGA+AGG + chr1_1:65052707-65052726 Msa0036460:CDS 55.0%
AAGCCCTTGTGTCAGAGGAG+AGG + chr1_1:65052971-65052990 Msa0036460:CDS 55.0%
CTTGCCTCTCCTCTGACACA+AGG - chr1_1:65052978-65052997 None:intergenic 55.0%
TCCCATGAACCTGTTGCAGG+TGG + chr1_1:65053131-65053150 Msa0036460:CDS 55.0%
CTCCACCTGCAACAGGTTCA+TGG - chr1_1:65053136-65053155 None:intergenic 55.0%
ATGGGATTGCTGCTGGGATG+AGG + chr1_1:65053223-65053242 Msa0036460:CDS 55.0%
GCTGCTGGGATGAGGAATAC+CGG + chr1_1:65053231-65053250 Msa0036460:CDS 55.0%
TGTGCAGGGTGGAGTTTCCC+CGG + chr1_1:65046185-65046204 Msa0036460:CDS 60.0%
! CCAGCAAGTTGAGGGAGCTG+TGG - chr1_1:65048863-65048882 None:intergenic 60.0%
CCACAGCTCCCTCAACTTGC+TGG + chr1_1:65048860-65048879 Msa0036460:CDS 60.0%
!! GCGGGAGCTTTAAGTGCACC+GGG - chr1_1:65049268-65049287 None:intergenic 60.0%
CTTAAAGCTCCCGCACACGC+AGG + chr1_1:65049274-65049293 Msa0036460:intron 60.0%
! TGGCCGCTTCACTGCTGCTT+GGG + chr1_1:65051730-65051749 Msa0036460:CDS 60.0%
ACACTGTTCCATGGCCGTGG+AGG + chr1_1:65051812-65051831 Msa0036460:CDS 60.0%
CAATACTGCCTCCACGGCCA+TGG - chr1_1:65051823-65051842 None:intergenic 60.0%
CATGGCCGTGGAGGCAGTAT+TGG + chr1_1:65051821-65051840 Msa0036460:CDS 60.0%
!! CGTGGAGGCAGTATTGGTCG+AGG + chr1_1:65051827-65051846 Msa0036460:CDS 60.0%
!! GGAGGCAGTATTGGTCGAGG+CGG + chr1_1:65051830-65051849 Msa0036460:CDS 60.0%
AGGCGGTGGCCCTACATATC+TGG + chr1_1:65051847-65051866 Msa0036460:CDS 60.0%
CCATCACAGACCCAGGTGGT+TGG - chr1_1:65051883-65051902 None:intergenic 60.0%
CCAACCACCTGGGTCTGTGA+TGG + chr1_1:65051880-65051899 Msa0036460:CDS 60.0%
CCTACCATCACAGACCCAGG+TGG - chr1_1:65051887-65051906 None:intergenic 60.0%
CCACCTGGGTCTGTGATGGT+AGG + chr1_1:65051884-65051903 Msa0036460:intron 60.0%
!! CTTCCAGCTTGGCTCGGAGT+TGG + chr1_1:65052802-65052821 Msa0036460:CDS 60.0%
! GGGTCTGGGGTGCTAGCTGA+TGG + chr1_1:65049740-65049759 Msa0036460:CDS 65.0%
CTGGCCGCTTCACTGCTGCT+TGG + chr1_1:65051729-65051748 Msa0036460:CDS 65.0%
!! GGCAGTATTGGTCGAGGCGG+TGG + chr1_1:65051833-65051852 Msa0036460:CDS 65.0%
GGGTGGGAGAGGTGGACGAA+GGG - chr1_1:65052545-65052564 None:intergenic 65.0%
TCATCTCGGGGTGGGAGAGG+TGG - chr1_1:65052553-65052572 None:intergenic 65.0%
CTGCTTCAGGCGTGGCTTCG+TGG - chr1_1:65052669-65052688 None:intergenic 65.0%
GCCACGCCTGAAGCAGAGCT+TGG + chr1_1:65052673-65052692 Msa0036460:CDS 65.0%
GCCAAGCTCTGCTTCAGGCG+TGG - chr1_1:65052677-65052696 None:intergenic 65.0%
GCTCCAACTCCGAGCCAAGC+TGG - chr1_1:65052808-65052827 None:intergenic 65.0%
!! GCTTGGCTCGGAGTTGGAGC+AGG + chr1_1:65052808-65052827 Msa0036460:CDS 65.0%
TTCCCGGACCCTGCGTGTGC+GGG - chr1_1:65049286-65049305 None:intergenic 70.0%
CTTCCCGGACCCTGCGTGTG+CGG - chr1_1:65049287-65049306 None:intergenic 70.0%
GCACACGCAGGGTCCGGGAA+GGG + chr1_1:65049286-65049305 Msa0036460:intron 70.0%
CACACGCAGGGTCCGGGAAG+GGG + chr1_1:65049287-65049306 Msa0036460:intron 70.0%
GGGGTGGGAGAGGTGGACGA+AGG - chr1_1:65052546-65052565 None:intergenic 70.0%
GCTCCCGCACACGCAGGGTC+CGG + chr1_1:65049280-65049299 Msa0036460:intron 75.0%
CTCCCGCACACGCAGGGTCC+GGG + chr1_1:65049281-65049300 Msa0036460:intron 75.0%
CGCACACGCAGGGTCCGGGA+AGG + chr1_1:65049285-65049304 Msa0036460:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65044974 65053561 65044974 ID=Msa0036460;Name=Msa0036460
chr1_1 mRNA 65044974 65053561 65044974 ID=Msa0036460-mRNA-1;Parent=Msa0036460;Name=Msa0036460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=200|1|1|1|1|1|20|304|1039
chr1_1 exon 65044974 65045329 65044974 ID=Msa0036460-mRNA-1:exon:20904;Parent=Msa0036460-mRNA-1
chr1_1 exon 65045583 65045746 65045583 ID=Msa0036460-mRNA-1:exon:20905;Parent=Msa0036460-mRNA-1
chr1_1 exon 65046122 65046236 65046122 ID=Msa0036460-mRNA-1:exon:20906;Parent=Msa0036460-mRNA-1
chr1_1 exon 65046478 65046555 65046478 ID=Msa0036460-mRNA-1:exon:20907;Parent=Msa0036460-mRNA-1
chr1_1 exon 65046666 65046734 65046666 ID=Msa0036460-mRNA-1:exon:20908;Parent=Msa0036460-mRNA-1
chr1_1 exon 65046862 65046940 65046862 ID=Msa0036460-mRNA-1:exon:20909;Parent=Msa0036460-mRNA-1
chr1_1 exon 65047061 65047137 65047061 ID=Msa0036460-mRNA-1:exon:20910;Parent=Msa0036460-mRNA-1
chr1_1 exon 65047223 65047318 65047223 ID=Msa0036460-mRNA-1:exon:20911;Parent=Msa0036460-mRNA-1
chr1_1 exon 65047587 65047725 65047587 ID=Msa0036460-mRNA-1:exon:20912;Parent=Msa0036460-mRNA-1
chr1_1 exon 65048154 65048258 65048154 ID=Msa0036460-mRNA-1:exon:20913;Parent=Msa0036460-mRNA-1
chr1_1 exon 65048530 65048582 65048530 ID=Msa0036460-mRNA-1:exon:20914;Parent=Msa0036460-mRNA-1
chr1_1 exon 65048659 65048925 65048659 ID=Msa0036460-mRNA-1:exon:20915;Parent=Msa0036460-mRNA-1
chr1_1 exon 65049528 65049653 65049528 ID=Msa0036460-mRNA-1:exon:20916;Parent=Msa0036460-mRNA-1
chr1_1 exon 65049731 65049832 65049731 ID=Msa0036460-mRNA-1:exon:20917;Parent=Msa0036460-mRNA-1
chr1_1 exon 65049903 65050049 65049903 ID=Msa0036460-mRNA-1:exon:20918;Parent=Msa0036460-mRNA-1
chr1_1 exon 65050786 65050884 65050786 ID=Msa0036460-mRNA-1:exon:20919;Parent=Msa0036460-mRNA-1
chr1_1 exon 65050986 65051074 65050986 ID=Msa0036460-mRNA-1:exon:20920;Parent=Msa0036460-mRNA-1
chr1_1 exon 65051480 65051606 65051480 ID=Msa0036460-mRNA-1:exon:20921;Parent=Msa0036460-mRNA-1
chr1_1 exon 65051695 65051901 65051695 ID=Msa0036460-mRNA-1:exon:20922;Parent=Msa0036460-mRNA-1
chr1_1 exon 65052433 65053561 65052433 ID=Msa0036460-mRNA-1:exon:20923;Parent=Msa0036460-mRNA-1
chr1_1 five_prime_UTR 65044974 65045173 65044974 ID=Msa0036460-mRNA-1:five_prime_utr;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65045174 65045329 65045174 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65045583 65045746 65045583 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65046122 65046236 65046122 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65046478 65046555 65046478 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65046666 65046734 65046666 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65046862 65046940 65046862 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65047061 65047137 65047061 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65047223 65047318 65047223 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65047587 65047725 65047587 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65048154 65048258 65048154 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65048530 65048582 65048530 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65048659 65048925 65048659 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65049528 65049653 65049528 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65049731 65049832 65049731 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65049903 65050049 65049903 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65050786 65050884 65050786 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65050986 65051074 65050986 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65051480 65051606 65051480 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65051695 65051901 65051695 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 CDS 65052433 65053257 65052433 ID=Msa0036460-mRNA-1:cds;Parent=Msa0036460-mRNA-1
chr1_1 three_prime_UTR 65053258 65053561 65053258 ID=Msa0036460-mRNA-1:three_prime_utr;Parent=Msa0036460-mRNA-1
Gene Sequence

>Msa0036460

ATGACAGACACTACAGATGATATTGCTGAAGAAATCTCGTTCCAGAGCTTCGATGATGATTGTAGGTTGCTTGGTAATCTTCTCAACGACATTCTTCACCGTGAAGTTGGTACCACCTTTGTTGACAAACTCGAAAGAATTCGTGTGCTTGCTCAAAGTGCATGTAATATGAGGCAAGCAGGTATAGTGAACATGGCTGAGTTACTTGAGAAGCAGTTAGCTTCAGAGTTGTCAAAGATGTCATTAGAAGAAGCTTTCACTCTTGCTCGTGCTTTCAGTCATTATCTTACTATGATGGGTATAGCTGAAACTCACCATAGGGTTCGTAAAGGAGGGAATATGGCACAAATTTCAAAATCTTGTGATGATGTGTTTAACCAGCTTGTGCAGGGTGGAGTTTCCCCGGATGATCTTTACAACACAGTCTGCAAACAGGAGGTTGAGATTGTTCTTACAGCTCATCCCACACAAATTAATCGACGAACACTGCAATACAAACACATTCGGATTGCTCATCTTTTGGATTATAACGATCGACCTGATCTTAGCCCTGAAGATCGAGAAATGCTGATTGAGGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAGCTTAGGCGCCAAAAACCCACTCCAGTTGATGAAGCTAGAGCTGGTTTGAATATAGTGGAGCAGTCACTCTGGAAAGCTGTTCCTCATTATTTACGACGTGTCAGCAATGCTTTAAAGAAGCATACTGGAAAGCCACTTCCACTGACTTGCACTCCCATAAAGTTTGGAACTTGGATGGGAGGTGATAGAGATGGAAATCCAAACGTTACCGCAAAGGTCACAAAAGCTGTTTCACTTCTATCTAGATGGATGGCTATTGACCTCTATATTCGGGAAGTGGATAGCCTCAGATTTGAGCTATCTATGAATCGGTGCAGTGATACGTTGTCAAGACTAGCACATGAAATTCTAGAAGAAGCTAAAGACGAGAATCGCCATGAGAGTTGGAATCAGTCCACGAATAGAAGTCAGTCACTTCCAACACAGCTTCCAGCTAGAGCTCATTTACCCTCTTTTGCTGAAAATGGTGAATCGCAGCATCCTAGACTAGACATCCCAGGACCTGATCACAAGGACGGTGGTATTTCTCCAAGTCCAACTACACTCAGAACTGGCAATCCCAGTCTTAAAGTATCAGTAACAAGTTCAGAAAATTCCAATGGTTCTTCATCTTCAATTCCATCTTCTCCCTCTTACAACTCTAGTCAACCGCTGTCTCAGAGGAAATTTACAGAATCCCAGACAGGAAAGTCCAGTTTTCAGAAGCTTTTAGAGCCACAGCTCCCTCAACTTGCTGGAATTGCTCCTTATAGAGTTGTCCTGGGAAATGTAAAGGATAAGCTTGAGAGAAGCCGTAGACGGTTAGAACTTCTTCTTGAGGATGTTGCATGTGACTATGATCCTTTGGATTATTATGAAACAGCTGACCAGCTTTTGGAACCTCTGCTCCTCTGTTATGAATCTCTGCAATCATGTGGGTCTGGGGTGCTAGCTGATGGTCGACTTGCTGATCTCATTCGTAGAGTTGCAACCTTTGGAATGGTTTTAATGAAGCTTGATTTACGCCAGGAATCTGGGAGACATGCTGAAACACTTGATGCAGTTACAACATATTTGGATATGGGTACTTATAGTGAATGGGATGAAGAAAAGAAATTGGACTTCTTAACAAGAGAGCTGAAAGGAAAGAGGCCACTAGTTCCTGTTAGTATGGAGGTTCCTGCTGATGTTAAAGAAGTCTTGGATACATTCCGAATCGCTGCTGAACTAGGGAGTGATTTTCTAGGAGCCTATGTGATATCTATGGCCTCGAGTGCAAGTGATGTCCTTGCAGTAGAGCTTTTACAGAAGGATGCACGGCTTGCTGCTATTGGAGAATTGGGAAGAGCATGTCCTGGTGGAACGTTGCGGGTTGTCCCTCTATTTGAAACCGTGAAGGACCTAAGAGGTGCTGGTTCAGTTATCCGGAAACTTTTATCAATAGACTGGTACCGCGAGCACGTCATTAAGAACCACAATGGACATCAAGAGGTTATGGTTGGATATTCTGATTCTGGTAAAGATGCTGGCCGCTTCACTGCTGCTTGGGAACTTTACAAAGCTCAGGAGGATGTTGTAGCTGCTTGCAATGATTATGGTATTAAAGTTACACTGTTCCATGGCCGTGGAGGCAGTATTGGTCGAGGCGGTGGCCCTACATATCTGGCTATTCAGTCCCAACCACCTGGGTCTGTGATGGGAACACTTCGGTCTACCGAGCAGGGAGAAATGGTAGAGGCTAAGTTTGGGTTGCCACAGATAGCTGTTAGACAACTTGAAATATACACAACTGCTGTATTACTTGCAACCCTTCGTCCACCTCTCCCACCCCGAGATGAAAATTGGCGTAGTCTCATGGAAGAAATCTCAGATATCAGCTGCAAGTGTTACCGCAATGTAGTCTACGAAAATCCAGAGTTCCTTTCTTACTTCCACGAAGCCACGCCTGAAGCAGAGCTTGGCTTCCTGAACATAGGTAGTCGCCCTGCAAGAAGGAAGAACACAAAGGGAATTGGAAACCTTCGTGCTATTCCCTGGGTATTTGCTTGGACTCAAACCAGATTTGTTCTTCCAGCTTGGCTCGGAGTTGGAGCAGGTTTGAAAGGTGCTTGTGAGAAAGGTCATAGCGAAGAACTAAAAGCAATGTACAAAGAATGGCCTTTCTTTCAAAGTACAATAGACCTTATTGAGATGGTGTTAGGGAAAGCAGACACTACTATAGCCAAGTACTATGATGAAGCCCTTGTGTCAGAGGAGAGGCAAGAACTCGGACGTGAGCTAAGAAACGAGCTCCTGACAGCTGAAAAGTTTGTGCTCGTGATTAGTGGGCATGAGAAACTTCAGCAGAATAATAGGAGCTTGAGGAGGTTGGTTGAGAATAGACTTCCATTTCTCAATCCCATGAACCTGTTGCAGGTGGAGATTCTGAAGAGGTTGAGGCGTGATGACGACAACCTTAAACTCAGAGATGCTTTGCTTATCACCGTAAATGGGATTGCTGCTGGGATGAGGAATACCGGTTAA
Protein sequence

>Msa0036460

MTDTTDDIAEEISFQSFDDDCRLLGNLLNDILHREVGTTFVDKLERIRVLAQSACNMRQAGIVNMAELLEKQLASELSKMSLEEAFTLARAFSHYLTMMGIAETHHRVRKGGNMAQISKSCDDVFNQLVQGGVSPDDLYNTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLDYNDRPDLSPEDREMLIEDLVREITSIWQTDELRRQKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCTPIKFGTWMGGDRDGNPNVTAKVTKAVSLLSRWMAIDLYIREVDSLRFELSMNRCSDTLSRLAHEILEEAKDENRHESWNQSTNRSQSLPTQLPARAHLPSFAENGESQHPRLDIPGPDHKDGGISPSPTTLRTGNPSLKVSVTSSENSNGSSSSIPSSPSYNSSQPLSQRKFTESQTGKSSFQKLLEPQLPQLAGIAPYRVVLGNVKDKLERSRRRLELLLEDVACDYDPLDYYETADQLLEPLLLCYESLQSCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAETLDAVTTYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPVSMEVPADVKEVLDTFRIAAELGSDFLGAYVISMASSASDVLAVELLQKDARLAAIGELGRACPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYREHVIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNDYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVEAKFGLPQIAVRQLEIYTTAVLLATLRPPLPPRDENWRSLMEEISDISCKCYRNVVYENPEFLSYFHEATPEAELGFLNIGSRPARRKNTKGIGNLRAIPWVFAWTQTRFVLPAWLGVGAGLKGACEKGHSEELKAMYKEWPFFQSTIDLIEMVLGKADTTIAKYYDEALVSEERQELGRELRNELLTAEKFVLVISGHEKLQQNNRSLRRLVENRLPFLNPMNLLQVEILKRLRRDDDNLKLRDALLITVNGIAAGMRNTG*