AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651340 MtrunA17_Chr4g0043931 91.124 676 28 5 1 666 1 654 0.0 1217
Msa0651340 MtrunA17_Chr4g0043951 73.381 556 135 3 1 554 1 545 0.0 816
Msa0651340 MtrunA17_Chr2g0331951 60.842 641 234 6 16 652 19 646 0.0 776
Msa0651340 MtrunA17_Chr4g0004261 59.119 658 251 7 1 652 8 653 0.0 768
Msa0651340 MtrunA17_Chr1g0185231 55.247 648 271 7 15 657 16 649 0.0 688
Msa0651340 MtrunA17_Chr7g0260181 54.167 648 273 6 19 657 17 649 0.0 675
Msa0651340 MtrunA17_Chr5g0425251 50.233 643 306 5 10 649 20 651 0.0 653
Msa0651340 MtrunA17_Chr3g0115481 49.690 646 300 7 10 646 23 652 0.0 629
Msa0651340 MtrunA17_Chr2g0278931 49.688 642 308 6 7 645 22 651 0.0 612
Msa0651340 MtrunA17_Chr6g0485191 44.222 649 336 9 18 658 59 689 0.0 559
Msa0651340 MtrunA17_Chr5g0425241 43.075 657 351 11 8 651 7 653 4.26e-173 509
Msa0651340 MtrunA17_Chr3g0124381 45.128 585 304 6 68 647 79 651 1.20e-172 508
Msa0651340 MtrunA17_Chr3g0115461 44.463 587 311 7 68 647 76 654 5.19e-164 486
Msa0651340 MtrunA17_Chr3g0124371 39.502 643 357 12 24 651 34 659 1.93e-147 443
Msa0651340 MtrunA17_Chr1g0173031 54.847 392 103 4 17 408 27 344 1.83e-132 393
Msa0651340 MtrunA17_Chr7g0222631 34.220 564 345 12 65 622 71 614 1.08e-100 323
Msa0651340 MtrunA17_Chr4g0043961 68.354 79 22 2 576 652 1 78 1.07e-24 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651340 AT1G23090.1 74.250 633 149 4 17 646 1 622 0.0 936
Msa0651340 AT3G15990.1 62.366 651 206 7 17 652 24 650 0.0 785
Msa0651340 AT1G23090.2 72.102 509 112 4 149 646 1 490 0.0 714
Msa0651340 AT1G23090.3 72.102 509 112 4 149 646 1 490 0.0 714
Msa0651340 AT1G23090.4 72.102 509 112 4 149 646 1 490 0.0 714
Msa0651340 AT3G51895.2 54.308 650 277 8 20 664 65 699 0.0 689
Msa0651340 AT3G51895.1 54.308 650 277 8 20 664 20 654 0.0 689
Msa0651340 AT4G08620.1 49.139 639 309 6 20 654 23 649 0.0 605
Msa0651340 AT1G22150.1 49.139 639 307 6 19 652 30 655 0.0 599
Msa0651340 AT1G22150.3 49.139 639 307 6 19 652 30 655 0.0 599
Msa0651340 AT1G22150.4 49.139 639 307 6 19 652 30 655 0.0 599
Msa0651340 AT1G78000.2 49.137 637 308 6 20 652 28 652 0.0 593
Msa0651340 AT1G78000.1 49.137 637 308 6 20 652 28 652 0.0 593
Msa0651340 AT1G78000.3 49.137 637 308 6 20 652 28 652 0.0 593
Msa0651340 AT4G02700.1 51.181 635 286 7 18 644 8 626 0.0 593
Msa0651340 AT1G78000.5 50.594 589 278 4 20 606 28 605 0.0 577
Msa0651340 AT1G22150.2 50.177 566 267 4 19 581 30 583 0.0 557
Msa0651340 AT1G78000.4 51.064 564 263 4 20 581 28 580 0.0 555
Msa0651340 AT5G19600.1 44.480 625 304 8 33 644 28 622 0.0 535
Msa0651340 AT5G10180.1 45.280 625 323 8 25 642 57 669 1.95e-175 516
Msa0651340 AT1G77990.1 44.518 602 309 8 65 657 90 675 2.47e-171 505
Msa0651340 AT1G78000.6 51.899 474 218 2 20 493 28 491 7.51e-158 465
Msa0651340 AT1G78000.7 49.123 456 219 4 128 581 1 445 1.61e-140 419
Msa0651340 AT3G12520.2 35.076 593 334 15 68 642 51 610 5.27e-107 338
Msa0651340 AT3G12520.1 35.076 593 334 15 68 642 67 626 7.03e-107 339
Msa0651340 AT5G13550.1 32.515 652 396 17 21 660 36 655 1.42e-101 325
Msa0651340 AT3G12520.3 35.484 496 284 10 68 554 67 535 2.88e-96 306

Find 134 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATCTGACCTTGTTTC+TGG 0.130134 4_3:+58740431 Msa0651340:CDS
TTATCCAAAGCAATCTTAAT+TGG 0.209529 4_3:+58741035 Msa0651340:CDS
TGAGGAAACCAAAGCTATTC+TGG 0.221724 4_3:+58744588 Msa0651340:CDS
CCACTTATTTATGCTGTTCT+TGG 0.224145 4_3:+58740721 Msa0651340:CDS
TTCTCTTCTCTTCTCTTCAA+TGG 0.277829 4_3:+58740169 Msa0651340:exon
CTGCAACAGCAAGGCCTAAC+TGG 0.284427 4_3:-58745711 None:intergenic
TGGAATATGTTGAAATTTCA+TGG 0.294784 4_3:+58744868 Msa0651340:CDS
CAACAACTTAAGAGCTTACT+TGG 0.304881 4_3:+58741092 Msa0651340:CDS
AGCAATCTTAATTGGATTCA+TGG 0.313090 4_3:+58741043 Msa0651340:CDS
CAAGGTCAGATTTAAAGATT+TGG 0.314407 4_3:-58740424 None:intergenic
GTATACTTACACGCAGAAAA+TGG 0.317177 4_3:-58741664 None:intergenic
AAGCTTCACTAGGAATTCTA+AGG 0.324093 4_3:+58740890 Msa0651340:CDS
GTGATGTTAACCGCTTTCTT+TGG 0.327317 4_3:+58745670 Msa0651340:CDS
TCCCCGCTGCCTGCCACATT+TGG 0.336834 4_3:+58745623 Msa0651340:CDS
GGAACAATGGCATAAGAAAA+AGG 0.348636 4_3:-58745537 None:intergenic
TTAGAACCCCATTGAAGAAT+AGG 0.358996 4_3:-58740392 None:intergenic
CTTCTTCCGTCTTGGTTGAC+TGG 0.362920 4_3:-58746825 None:intergenic
AAGGAATAAATCCTTCTTCA+TGG 0.363775 4_3:+58744848 Msa0651340:CDS
GCAAATCTTCCTCCAATTGT+TGG 0.366664 4_3:+58740594 Msa0651340:CDS
AGGAAGGACATTTGCAGCTC+TGG 0.374925 4_3:+58745121 Msa0651340:CDS
AATAAAGAAATGATGGCAAT+TGG 0.378840 4_3:+58745164 Msa0651340:CDS
TAGAACCCCATTGAAGAATA+GGG 0.379412 4_3:-58740391 None:intergenic
GAATCCAATTAAGATTGCTT+TGG 0.382130 4_3:-58741039 None:intergenic
ACACATTACCTGACATTTCC+AGG 0.383701 4_3:-58746214 None:intergenic
GAATGCATGGAGAAAGTATT+AGG 0.384355 4_3:-58740194 None:intergenic
ATAGAAATCTTCATCAATAC+AGG 0.385942 4_3:+58745937 Msa0651340:CDS
TGGAAAACAGAACTCATAAC+AGG 0.395270 4_3:-58741149 None:intergenic
TGGAGGAAGATTTGCAAGCT+TGG 0.399551 4_3:-58740586 None:intergenic
CTTGGTCTAGTCGTGAAAAC+TGG 0.401338 4_3:+58744898 Msa0651340:CDS
AGTGATGGGAATTTGCTTCT+TGG 0.405363 4_3:+58741506 Msa0651340:CDS
ATTGCGCCCAATACAACATT+AGG 0.408565 4_3:-58745568 None:intergenic
TACACACCTAATGTTGTATT+GGG 0.409395 4_3:+58745562 Msa0651340:CDS
ATACACACCTAATGTTGTAT+TGG 0.411358 4_3:+58745561 Msa0651340:CDS
GTTGATTTGATGCAATATAA+TGG 0.413059 4_3:-58740080 None:intergenic
ATATAGGAGTAGTAGCTATA+AGG 0.413110 4_3:-58740110 None:intergenic
GAGGTGGTTGTCCTTTGAAT+TGG 0.415965 4_3:-58740334 None:intergenic
CTTGACAGTTGGAGAGGCTG+TGG 0.416310 4_3:+58746777 Msa0651340:CDS
GCAGAGACCCAGAATAGCTT+TGG 0.416415 4_3:-58744596 None:intergenic
TTCAACATATTCCATGAAGA+AGG 0.416613 4_3:-58744859 None:intergenic
ACATTCACATTGTGTACAAA+TGG 0.421553 4_3:+58740217 Msa0651340:CDS
TAAAAGCAACAATGGAAAAG+AGG 0.421997 4_3:+58746554 Msa0651340:CDS
TTCCAAATGTGGCAGGCAGC+GGG 0.422579 4_3:-58745625 None:intergenic
GCAATCAAGGCTCAAAATCA+TGG 0.431453 4_3:+58744665 Msa0651340:CDS
AATTGGCGTAGAGGATCATC+AGG 0.432967 4_3:-58740317 None:intergenic
ATGTGTATGGTGTTATATAT+AGG 0.434426 4_3:-58740126 None:intergenic
AAGCTATTCTGGGTCTCTGC+TGG 0.437220 4_3:+58744599 Msa0651340:CDS
AGAGAAGAGAATAGAAGTAA+TGG 0.443916 4_3:-58740157 None:intergenic
ATAAAGAAATGATGGCAATT+GGG 0.445514 4_3:+58745165 Msa0651340:CDS
GCTAGTTGAAGAAACAGAAC+AGG 0.445796 4_3:-58740835 None:intergenic
AGAAGAGGAAGATAACATAA+AGG 0.445883 4_3:+58746166 Msa0651340:CDS
ACAAGTGAAGCAATAGAAAC+AGG 0.450000 4_3:-58740769 None:intergenic
GTGATGTTTGCAAAATTGAT+AGG 0.450588 4_3:-58746005 None:intergenic
TACTTACATAGTCCAACAAT+TGG 0.451784 4_3:-58740606 None:intergenic
ACTTCCTGCTATGTAACAAC+AGG 0.458112 4_3:+58745212 Msa0651340:CDS
GAGGAAACCAAAGCTATTCT+GGG 0.459759 4_3:+58744589 Msa0651340:CDS
TGAGATTCCACTTGTGTCAA+TGG 0.462450 4_3:-58746518 None:intergenic
AAGGCCTAAAACAGTAATGA+TGG 0.462741 4_3:+58745890 Msa0651340:CDS
ATCATAGTCACAGCAGTGAT+TGG 0.463581 4_3:+58745589 Msa0651340:CDS
ATACAACATTAGGTGTGTAT+TGG 0.467671 4_3:-58745558 None:intergenic
ATCTTAATTGGATTCATGGC+TGG 0.470414 4_3:+58741047 Msa0651340:CDS
TGTATGTGCTTCTTCCGTCT+TGG 0.473979 4_3:-58746833 None:intergenic
ATGCTGTTCTTGGAAGTTCA+AGG 0.477063 4_3:+58740731 Msa0651340:CDS
GTCTATCTTCCAAATGTGGC+AGG 0.478726 4_3:-58745632 None:intergenic
GAGATTATGACACACATAAG+AGG 0.480206 4_3:-58744626 None:intergenic
CTTCCAAATGTGGCAGGCAG+CGG 0.488725 4_3:-58745626 None:intergenic
ATCATTTAAACTGTAAAGTG+TGG 0.492622 4_3:-58746943 None:intergenic
CCTCTCCAACTGTCAAGAAA+AGG 0.505332 4_3:-58746771 None:intergenic
GGATACTCCTGCAAATTACA+AGG 0.513068 4_3:+58745871 Msa0651340:CDS
TGCTGTTCTTGGAAGTTCAA+GGG 0.514486 4_3:+58740732 Msa0651340:CDS
GGATGGAAATAAAGAAATGA+TGG 0.515894 4_3:+58745157 Msa0651340:CDS
AAAAGCAACAATGGAAAAGA+GGG 0.517204 4_3:+58746555 Msa0651340:CDS
CAAGGAGTTAAAAGCAACAA+TGG 0.517597 4_3:+58746546 Msa0651340:CDS
AATGGAATGTATTATGTGTA+TGG 0.518589 4_3:-58740139 None:intergenic
ATGCTCAAAATAAGAAAGCC+TGG 0.523631 4_3:-58745975 None:intergenic
TAGATTGGAAAATTGCATGA+AGG 0.530054 4_3:+58744829 Msa0651340:intron
TGATTATTTACATACACTCT+CGG 0.531979 4_3:+58747075 Msa0651340:three_prime_UTR
AAATTTCATGGAAGTCACCT+TGG 0.533094 4_3:+58744880 Msa0651340:CDS
AGGCCTAAAACAGTAATGAT+GGG 0.534416 4_3:+58745891 Msa0651340:CDS
GGAAGGACATTTGCAGCTCT+GGG 0.536167 4_3:+58745122 Msa0651340:CDS
TGTGAGGTGGTGGAACAACT+TGG 0.540385 4_3:-58740247 None:intergenic
GGTCTATTTCAAGCTTCACT+AGG 0.546560 4_3:+58740880 Msa0651340:CDS
GTGAAAACTGGCATTATCAC+TGG 0.547543 4_3:+58744910 Msa0651340:CDS
AGAACCTGTTGTTACATAGC+AGG 0.550167 4_3:-58745216 None:intergenic
CCAAGAACAGCATAAATAAG+TGG 0.551087 4_3:-58740721 None:intergenic
GTCATGGCAAACAATAGTGA+TGG 0.551750 4_3:+58741491 Msa0651340:CDS
TTTCTATATATGTCTGTCCC+TGG 0.552220 4_3:-58745921 None:intergenic
CTGGGAAACTACAAAGTGGA+TGG 0.553696 4_3:+58745140 Msa0651340:CDS
TCAGCTGTTAATAACAATGC+AGG 0.561538 4_3:+58745460 Msa0651340:CDS
AACAGAACAGGTTCTGCTGA+AGG 0.564338 4_3:-58740823 None:intergenic
ACATCACATATCTCAATGAC+AGG 0.566479 4_3:+58746021 Msa0651340:CDS
TTCTGTACTTTAGTTGACAT+AGG 0.569266 4_3:+58739992 Msa0651340:five_prime_UTR
AAACAGGAAGGTATTGCAGT+AGG 0.569633 4_3:+58745101 Msa0651340:intron
GATCCTCTACGCCAATTCAA+AGG 0.572296 4_3:+58740323 Msa0651340:CDS
ATTTGTCTATCTTCCAAATG+TGG 0.574245 4_3:-58745636 None:intergenic
TGCTAGCTTAGCCATCCCAC+AGG 0.575905 4_3:+58740463 Msa0651340:CDS
ATTGGGTGTATGAATGTGGT+TGG 0.586439 4_3:+58745182 Msa0651340:CDS
TTACATAGTCCAACAATTGG+AGG 0.587072 4_3:-58740603 None:intergenic
GTAATGATGGGGAATATACC+AGG 0.587250 4_3:+58745903 Msa0651340:CDS
TGTATTCTGACAGCTTGTGT+TGG 0.588408 4_3:+58746675 Msa0651340:intron
GTGAGCGCCATTGACACAAG+TGG 0.593369 4_3:+58746511 Msa0651340:CDS
ATAAATGCATGCAGAGCATG+AGG 0.596892 4_3:+58744570 Msa0651340:intron
CTTGATATTAATCAGTAATG+TGG 0.600180 4_3:-58746862 None:intergenic
ACAATGTGAATGTGAATGCA+TGG 0.601388 4_3:-58740207 None:intergenic
GGCAATTGGGTGTATGAATG+TGG 0.608184 4_3:+58745178 Msa0651340:CDS
TCATGGCAAACAATAGTGAT+GGG 0.609552 4_3:+58741492 Msa0651340:CDS
CAATAGTGAGACCAGAAACA+AGG 0.611141 4_3:-58740442 None:intergenic
TGTTACATAGCAGGAAGTGA+AGG 0.613521 4_3:-58745207 None:intergenic
TTAGGTGTGTATTGGAACAA+TGG 0.616093 4_3:-58745550 None:intergenic
AGGAAGGTATTGCAGTAGGA+AGG 0.616887 4_3:+58745105 Msa0651340:intron
ACGATGGATTGAAGAAGAAG+AGG 0.617925 4_3:+58746151 Msa0651340:CDS
TGTCCTTTGAATTGGCGTAG+AGG 0.623132 4_3:-58740326 None:intergenic
AGGGAAGCTACAAGAATACC+AGG 0.627065 4_3:+58745957 Msa0651340:CDS
GGCCTAAAACAGTAATGATG+GGG 0.628045 4_3:+58745892 Msa0651340:CDS
GAGTGTCACCATCACTGTCA+CGG 0.630556 4_3:-58745515 None:intergenic
TATTGTGAAACTTACAGTGA+GGG 0.630959 4_3:-58744941 None:intergenic
AGTTCAAGGGATCTAGCAGT+AGG 0.632392 4_3:+58740745 Msa0651340:CDS
AATTTGACAAACCTGTGGGA+TGG 0.635463 4_3:-58740474 None:intergenic
ATCATATTAGGACGCTACGA+TGG 0.635788 4_3:+58746135 Msa0651340:intron
GAAGAGCCAGTCAACCAAGA+CGG 0.642630 4_3:+58746819 Msa0651340:CDS
AGAAAGCGGTTAACATCACA+AGG 0.644103 4_3:-58745666 None:intergenic
ATGAACTCACTGCAACAGCA+AGG 0.645871 4_3:-58745720 None:intergenic
ATTATGAACAAAATCTTGTG+AGG 0.646128 4_3:-58747014 None:intergenic
TAGAAATCTTCATCAATACA+GGG 0.647002 4_3:+58745938 Msa0651340:CDS
AGGCAGCGGGGATATCAATG+AGG 0.648129 4_3:-58745612 None:intergenic
AGTAATGTCCGTGACAGTGA+TGG 0.653422 4_3:+58745507 Msa0651340:CDS
TCCAAATGTGGCAGGCAGCG+GGG 0.664752 4_3:-58745624 None:intergenic
AGAACAGCATAAATAAGTGG+AGG 0.669056 4_3:-58740718 None:intergenic
GTTGGTGAATCCTCTTGCCG+AGG 0.678987 4_3:+58746693 Msa0651340:CDS
TTACACGCAGAAAATGGACA+AGG 0.693318 4_3:-58741658 None:intergenic
AAAGCAACAATGGAAAAGAG+GGG 0.696537 4_3:+58746556 Msa0651340:CDS
TACACGCAGAAAATGGACAA+GGG 0.710332 4_3:-58741657 None:intergenic
TAATGATGGGGAATATACCA+GGG 0.716136 4_3:+58745904 Msa0651340:CDS
AGCTCTGGGAAACTACAAAG+TGG 0.725432 4_3:+58745136 Msa0651340:CDS
ATTGGCGTAGAGGATCATCA+GGG 0.743420 4_3:-58740316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATATAATTATTAAA+TGG + chr4_3:58743060-58743079 Msa0651340:intron 0.0%
!! AAAAATAATGAATAAAATGA+AGG - chr4_3:58742625-58742644 None:intergenic 10.0%
!!! ATTCATTATTTTTTTTACAT+TGG + chr4_3:58742632-58742651 Msa0651340:intron 10.0%
!! AAAAAAATGATTATATTAAG+AGG + chr4_3:58742977-58742996 Msa0651340:intron 10.0%
!!! ATATAATATGCATTTTTTTA+TGG + chr4_3:58743086-58743105 Msa0651340:intron 10.0%
!!! TATAATATGCATTTTTTTAT+GGG + chr4_3:58743087-58743106 Msa0651340:intron 10.0%
!!! TTTTAAAAAAGTTATGATTT+TGG + chr4_3:58743210-58743229 Msa0651340:intron 10.0%
!! TCAAAGAATAATATTATATA+GGG - chr4_3:58743237-58743256 None:intergenic 10.0%
!! ATCAAAGAATAATATTATAT+AGG - chr4_3:58743238-58743257 None:intergenic 10.0%
!!! ATTAAGAAAAAAATAGATTT+TGG + chr4_3:58743533-58743552 Msa0651340:intron 10.0%
!!! AATATTTTCTCATAATAAAA+AGG - chr4_3:58743960-58743979 None:intergenic 10.0%
!!! TAACTTTTTTTACTTAATAA+GGG - chr4_3:58744166-58744185 None:intergenic 10.0%
!!! TTAACTTTTTTTACTTAATA+AGG - chr4_3:58744167-58744186 None:intergenic 10.0%
!! TGTTTATTAAAAAAAAAAAC+AGG + chr4_3:58745085-58745104 Msa0651340:intron 10.0%
!!! AATTATGTAACTTGTTTATT+AGG + chr4_3:58740551-58740570 Msa0651340:intron 15.0%
!!! ATTATGTAACTTGTTTATTA+GGG + chr4_3:58740552-58740571 Msa0651340:intron 15.0%
!! TTATAAGTAAATGTTATGAT+AGG + chr4_3:58742076-58742095 Msa0651340:intron 15.0%
!!! AACAATTTTTTTTAGTTTAG+AGG + chr4_3:58742364-58742383 Msa0651340:intron 15.0%
!!! ACAATTTTTTTTAGTTTAGA+GGG + chr4_3:58742365-58742384 Msa0651340:intron 15.0%
!! AATATAATAAAAATTCGTCT+TGG - chr4_3:58742835-58742854 None:intergenic 15.0%
!!! TGAAGTTTTTTTTTTTTTGA+AGG + chr4_3:58742855-58742874 Msa0651340:intron 15.0%
!!! ACCATATAATATTTTTTCAA+TGG + chr4_3:58743008-58743027 Msa0651340:intron 15.0%
!! TCCATTGAAAAAATATTATA+TGG - chr4_3:58743012-58743031 None:intergenic 15.0%
!!! ATGTTTTTGAAAGTTTTTAT+TGG + chr4_3:58743036-58743055 Msa0651340:intron 15.0%
!! GAATGTACATTTATTATTAT+GGG + chr4_3:58743109-58743128 Msa0651340:intron 15.0%
!!! AAATGATTTTTTTAGCAAAA+TGG + chr4_3:58743593-58743612 Msa0651340:intron 15.0%
!!! ATACAATCGTTTTTTTTTTA+AGG + chr4_3:58743762-58743781 Msa0651340:intron 15.0%
!! ATTTAATCAATAAGACTATT+AGG - chr4_3:58744035-58744054 None:intergenic 15.0%
!! AGAAATAATAATTAATCTCA+TGG - chr4_3:58744791-58744810 None:intergenic 15.0%
!! TATTAAAAAAAAAAACAGGA+AGG + chr4_3:58745089-58745108 Msa0651340:intron 15.0%
!! TGAATAAGTTAAGTTCAAAA+GGG - chr4_3:58740532-58740551 None:intergenic 20.0%
!! TTGAATAAGTTAAGTTCAAA+AGG - chr4_3:58740533-58740552 None:intergenic 20.0%
!!! ATACCTTTTTTAGAACATAT+GGG - chr4_3:58740956-58740975 None:intergenic 20.0%
!!! TATACCTTTTTTAGAACATA+TGG - chr4_3:58740957-58740976 None:intergenic 20.0%
!!! TGTTATTTATTAATGATTGC+AGG + chr4_3:58740991-58741010 Msa0651340:intron 20.0%
!! TTTATCACCACTTAATATAT+TGG - chr4_3:58741710-58741729 None:intergenic 20.0%
!!! TGATAAAAGTATATAGTTTC+AGG + chr4_3:58741723-58741742 Msa0651340:intron 20.0%
!!! TTACATTGGTCAAATTTTTA+AGG + chr4_3:58742646-58742665 Msa0651340:intron 20.0%
!! GGAATGTACATTTATTATTA+TGG + chr4_3:58743108-58743127 Msa0651340:intron 20.0%
!!! GTAGGTAAAAAAAATCATTT+TGG + chr4_3:58743338-58743357 Msa0651340:intron 20.0%
!!! TCTATTTTTTTCTTAATGCA+AGG - chr4_3:58743530-58743549 None:intergenic 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG + chr4_3:58743566-58743585 Msa0651340:intron 20.0%
!! CAAAAAAATCCAAAACAAAT+AGG + chr4_3:58743690-58743709 Msa0651340:intron 20.0%
!!! TGTGATTCTTTTTTCTTTTT+TGG - chr4_3:58743812-58743831 None:intergenic 20.0%
!! CATTATCAAAACACAAAAAA+AGG - chr4_3:58743858-58743877 None:intergenic 20.0%
!!! CTTTTTTTGTGTTTTGATAA+TGG + chr4_3:58743856-58743875 Msa0651340:intron 20.0%
!! CTAAGATTTCAAAAAGAAAA+TGG - chr4_3:58744067-58744086 None:intergenic 20.0%
!!! CATTTTCTTTTTGAAATCTT+AGG + chr4_3:58744065-58744084 Msa0651340:intron 20.0%
!!! AATTTTAAGATGCAAATCTT+TGG - chr4_3:58744316-58744335 None:intergenic 20.0%
!!! GAACTTATGAATTTTAAGTT+TGG - chr4_3:58744363-58744382 None:intergenic 20.0%
!! AAATATATCAGATACCTATT+GGG - chr4_3:58744417-58744436 None:intergenic 20.0%
!! AAAATATATCAGATACCTAT+TGG - chr4_3:58744418-58744437 None:intergenic 20.0%
!! TGAAATTCATAGTTTAAATG+AGG - chr4_3:58745425-58745444 None:intergenic 20.0%
!! TCATTTAAACTATGAATTTC+AGG + chr4_3:58745424-58745443 Msa0651340:intron 20.0%
!!! TAGTATTGACATATCATATT+AGG + chr4_3:58746123-58746142 Msa0651340:intron 20.0%
!! CAAATAAATATGATGTAAGA+GGG - chr4_3:58746479-58746498 None:intergenic 20.0%
!! TCAAATAAATATGATGTAAG+AGG - chr4_3:58746480-58746499 None:intergenic 20.0%
!!! GATTTAAGACATATCTATTA+AGG - chr4_3:58746635-58746654 None:intergenic 20.0%
!!! TCTTTTAGATGAGTTGATTA+TGG + chr4_3:58740036-58740055 Msa0651340:five_prime_UTR 25.0%
!!! CTTTTAGATGAGTTGATTAT+GGG + chr4_3:58740037-58740056 Msa0651340:five_prime_UTR 25.0%
!!! TTTTAGATGAGTTGATTATG+GGG + chr4_3:58740038-58740057 Msa0651340:five_prime_UTR 25.0%
!!! GTTGATTTGATGCAATATAA+TGG - chr4_3:58740083-58740102 None:intergenic 25.0%
!!! ATGTGTATGGTGTTATATAT+AGG - chr4_3:58740129-58740148 None:intergenic 25.0%
! AATGGAATGTATTATGTGTA+TGG - chr4_3:58740142-58740161 None:intergenic 25.0%
!! CCTAACTTCAAATTTTTGTA+AGG - chr4_3:58740279-58740298 None:intergenic 25.0%
!! CCTTACAAAAATTTGAAGTT+AGG + chr4_3:58740276-58740295 Msa0651340:CDS 25.0%
!!! ATTTTTTCCCTATTCTTCAA+TGG + chr4_3:58740384-58740403 Msa0651340:CDS 25.0%
!!! TTTTTTCCCTATTCTTCAAT+GGG + chr4_3:58740385-58740404 Msa0651340:CDS 25.0%
! ATAAAATTTGACAAACCTGT+GGG - chr4_3:58740481-58740500 None:intergenic 25.0%
! TATAAAATTTGACAAACCTG+TGG - chr4_3:58740482-58740501 None:intergenic 25.0%
!!! TTTCCCATATGTTCTAAAAA+AGG + chr4_3:58740950-58740969 Msa0651340:intron 25.0%
! TTATCCAAAGCAATCTTAAT+TGG + chr4_3:58741035-58741054 Msa0651340:CDS 25.0%
!! AATTAACCTCATGTATGTTT+TGG - chr4_3:58741172-58741191 None:intergenic 25.0%
! GACAATGCATAATATATACA+AGG + chr4_3:58741307-58741326 Msa0651340:intron 25.0%
!! ATTTTCTTTCTACAATCTCA+TGG + chr4_3:58741634-58741653 Msa0651340:CDS 25.0%
! TAAGTATACCCTTAAGAAAT+AGG + chr4_3:58741678-58741697 Msa0651340:intron 25.0%
! TGCACAAATAATAAAACACA+TGG + chr4_3:58741746-58741765 Msa0651340:intron 25.0%
! TGGGAAAAGAATAAAATCAT+AGG - chr4_3:58741852-58741871 None:intergenic 25.0%
! AAATAGAGAAAGAAACACTT+GGG - chr4_3:58741871-58741890 None:intergenic 25.0%
! AAAATAGAGAAAGAAACACT+TGG - chr4_3:58741872-58741891 None:intergenic 25.0%
! TTATGTAGTAAAAGTCGAAA+CGG - chr4_3:58742022-58742041 None:intergenic 25.0%
!!! TGTTTTTACACATCATACAA+AGG - chr4_3:58742240-58742259 None:intergenic 25.0%
!! TTATTATTATGGGTGAGTTT+TGG + chr4_3:58743119-58743138 Msa0651340:intron 25.0%
!! GGTAAAAAAAATCATTTTGG+AGG + chr4_3:58743341-58743360 Msa0651340:intron 25.0%
!! TTAATTACTCGAGAGATTTT+GGG - chr4_3:58743716-58743735 None:intergenic 25.0%
!! TTTAATTACTCGAGAGATTT+TGG - chr4_3:58743717-58743736 None:intergenic 25.0%
! AAAAGAATCACATGCATTAT+TGG + chr4_3:58743820-58743839 Msa0651340:intron 25.0%
!!! TTTCTTTTTGAAATCTTAGG+TGG + chr4_3:58744068-58744087 Msa0651340:intron 25.0%
!! AGATACGTTTTGCAAATTTT+GGG + chr4_3:58744231-58744250 Msa0651340:intron 25.0%
! CAACTTTATGTCTAAGAAAT+TGG - chr4_3:58744274-58744293 None:intergenic 25.0%
!!! TATTGATTTTAGCATGCAAT+TGG - chr4_3:58744390-58744409 None:intergenic 25.0%
! TATATATACAACAACTTCTC+TGG + chr4_3:58744499-58744518 Msa0651340:intron 25.0%
! TGGAATATGTTGAAATTTCA+TGG + chr4_3:58744868-58744887 Msa0651340:CDS 25.0%
!!! TGCATAGTAGGTTTTATAAA+TGG + chr4_3:58745043-58745062 Msa0651340:intron 25.0%
!!! GGTTTTATAAATGGCAAAAA+TGG + chr4_3:58745052-58745071 Msa0651340:intron 25.0%
! AATAAAGAAATGATGGCAAT+TGG + chr4_3:58745164-58745183 Msa0651340:CDS 25.0%
! ATAAAGAAATGATGGCAATT+GGG + chr4_3:58745165-58745184 Msa0651340:CDS 25.0%
! GTTTGTCACATAAATTCAAA+AGG + chr4_3:58745240-58745259 Msa0651340:intron 25.0%
! ATAGAAATCTTCATCAATAC+AGG + chr4_3:58745937-58745956 Msa0651340:CDS 25.0%
! TAGAAATCTTCATCAATACA+GGG + chr4_3:58745938-58745957 Msa0651340:CDS 25.0%
!!! TATTTTTGATACAGCAAATG+TGG + chr4_3:58746236-58746255 Msa0651340:intron 25.0%
! CTTGATATTAATCAGTAATG+TGG - chr4_3:58746865-58746884 None:intergenic 25.0%
! ATCATTTAAACTGTAAAGTG+TGG - chr4_3:58746946-58746965 None:intergenic 25.0%
! ATTATGAACAAAATCTTGTG+AGG - chr4_3:58747017-58747036 None:intergenic 25.0%
!! TCACAAGATTTTGTTCATAA+TGG + chr4_3:58747016-58747035 Msa0651340:three_prime_UTR 25.0%
! TGATTATTTACATACACTCT+CGG + chr4_3:58747075-58747094 Msa0651340:three_prime_UTR 25.0%
TTCTGTACTTTAGTTGACAT+AGG + chr4_3:58739992-58740011 Msa0651340:five_prime_UTR 30.0%
!!! GGTATAGTCTTGTTTTATAG+CGG + chr4_3:58740013-58740032 Msa0651340:five_prime_UTR 30.0%
ATATAGGAGTAGTAGCTATA+AGG - chr4_3:58740113-58740132 None:intergenic 30.0%
AGAGAAGAGAATAGAAGTAA+TGG - chr4_3:58740160-58740179 None:intergenic 30.0%
ACATTCACATTGTGTACAAA+TGG + chr4_3:58740217-58740236 Msa0651340:CDS 30.0%
! TTTTTCCCTATTCTTCAATG+GGG + chr4_3:58740386-58740405 Msa0651340:CDS 30.0%
CAAGGTCAGATTTAAAGATT+TGG - chr4_3:58740427-58740446 None:intergenic 30.0%
! TTTAAATCTGACCTTGTTTC+TGG + chr4_3:58740431-58740450 Msa0651340:CDS 30.0%
ATAAGTTAAGTTCAAAAGGG+TGG - chr4_3:58740529-58740548 None:intergenic 30.0%
TACTTACATAGTCCAACAAT+TGG - chr4_3:58740609-58740628 None:intergenic 30.0%
!! TCTATTGCTTCACTTGTTTT+AGG + chr4_3:58740775-58740794 Msa0651340:CDS 30.0%
TTGAAATAGACCAGCAAAAA+AGG - chr4_3:58740872-58740891 None:intergenic 30.0%
TTTATTAATGATTGCAGGCT+AGG + chr4_3:58740996-58741015 Msa0651340:intron 30.0%
GAATCCAATTAAGATTGCTT+TGG - chr4_3:58741042-58741061 None:intergenic 30.0%
AGCAATCTTAATTGGATTCA+TGG + chr4_3:58741043-58741062 Msa0651340:CDS 30.0%
! TGTTTTCCAAAACATACATG+AGG + chr4_3:58741163-58741182 Msa0651340:intron 30.0%
TATTTGTGTTTAGTGTAGCA+TGG - chr4_3:58741255-58741274 None:intergenic 30.0%
!!! GTATTTGTGTTTTTTTTCCG+AGG - chr4_3:58741346-58741365 None:intergenic 30.0%
GATCAACTCTATGTTACAAA+TGG - chr4_3:58741394-58741413 None:intergenic 30.0%
! AACATAGAGTTGATCTCTAT+AGG + chr4_3:58741399-58741418 Msa0651340:intron 30.0%
!!! TTATGTGTTTTTTTGTGCAG+TGG + chr4_3:58741469-58741488 Msa0651340:intron 30.0%
TACCCTTAAGAAATAGGAAA+AGG + chr4_3:58741684-58741703 Msa0651340:intron 30.0%
GAAAAGGCCAATATATTAAG+TGG + chr4_3:58741700-58741719 Msa0651340:intron 30.0%
GAATAAAATCATAGGACAAG+CGG - chr4_3:58741844-58741863 None:intergenic 30.0%
GATTTGTATAGCATGAATAC+GGG - chr4_3:58741949-58741968 None:intergenic 30.0%
CGATTTGTATAGCATGAATA+CGG - chr4_3:58741950-58741969 None:intergenic 30.0%
!! TTGACCGTTTTTAAGAACTA+TGG + chr4_3:58742529-58742548 Msa0651340:intron 30.0%
!! TGACCGTTTTTAAGAACTAT+GGG + chr4_3:58742530-58742549 Msa0651340:intron 30.0%
GAAGTTATACTCTAGATTCA+AGG + chr4_3:58742888-58742907 Msa0651340:intron 30.0%
!! GTGAGTTTTGGTATTTGTTT+TGG + chr4_3:58743131-58743150 Msa0651340:intron 30.0%
CCTACCATTAAATAGATCTA+GGG - chr4_3:58743323-58743342 None:intergenic 30.0%
ACCTACCATTAAATAGATCT+AGG - chr4_3:58743324-58743343 None:intergenic 30.0%
AAACACAAAAAAAGGTCATG+TGG - chr4_3:58743850-58743869 None:intergenic 30.0%
! CAGATACGTTTTGCAAATTT+TGG + chr4_3:58744230-58744249 Msa0651340:intron 30.0%
AAAATCAATACACACCCAAT+AGG + chr4_3:58744400-58744419 Msa0651340:intron 30.0%
GAAGTAAGTTCATTGAAACA+TGG - chr4_3:58744469-58744488 None:intergenic 30.0%
GTTGTATATATATGTGTGCA+AGG - chr4_3:58744491-58744510 None:intergenic 30.0%
TTGAGAAGCAAATAATGAGT+TGG - chr4_3:58744721-58744740 None:intergenic 30.0%
!! ATTATTTCTGTCTTCTGATG+TGG + chr4_3:58744802-58744821 Msa0651340:intron 30.0%
! TTCATGCAATTTTCCAATCT+AGG - chr4_3:58744830-58744849 None:intergenic 30.0%
TAGATTGGAAAATTGCATGA+AGG + chr4_3:58744829-58744848 Msa0651340:intron 30.0%
AAGGAATAAATCCTTCTTCA+TGG + chr4_3:58744848-58744867 Msa0651340:CDS 30.0%
TTCAACATATTCCATGAAGA+AGG - chr4_3:58744862-58744881 None:intergenic 30.0%
TATTGTGAAACTTACAGTGA+GGG - chr4_3:58744944-58744963 None:intergenic 30.0%
ATATTGTGAAACTTACAGTG+AGG - chr4_3:58744945-58744964 None:intergenic 30.0%
GGATGGAAATAAAGAAATGA+TGG + chr4_3:58745157-58745176 Msa0651340:CDS 30.0%
ATACAACATTAGGTGTGTAT+TGG - chr4_3:58745561-58745580 None:intergenic 30.0%
ATACACACCTAATGTTGTAT+TGG + chr4_3:58745561-58745580 Msa0651340:CDS 30.0%
TACACACCTAATGTTGTATT+GGG + chr4_3:58745562-58745581 Msa0651340:CDS 30.0%
ATTTGTCTATCTTCCAAATG+TGG - chr4_3:58745639-58745658 None:intergenic 30.0%
CACAAAATATGATGTTCACA+AGG - chr4_3:58745764-58745783 None:intergenic 30.0%
! AGGTTGGATTATCAACTTTT+AGG + chr4_3:58745850-58745869 Msa0651340:intron 30.0%
GTGATGTTTGCAAAATTGAT+AGG - chr4_3:58746008-58746027 None:intergenic 30.0%
ACTAACTAGTTAAGTAACAG+AGG - chr4_3:58746107-58746126 None:intergenic 30.0%
AGAAGAGGAAGATAACATAA+AGG + chr4_3:58746166-58746185 Msa0651340:CDS 30.0%
AATAAGCTCAAAACATCCAT+AGG - chr4_3:58746399-58746418 None:intergenic 30.0%
TAAAAGCAACAATGGAAAAG+AGG + chr4_3:58746554-58746573 Msa0651340:CDS 30.0%
AAAAGCAACAATGGAAAAGA+GGG + chr4_3:58746555-58746574 Msa0651340:CDS 30.0%
TTCTCTTCTCTTCTCTTCAA+TGG + chr4_3:58740169-58740188 Msa0651340:exon 35.0%
!! GAATGCATGGAGAAAGTATT+AGG - chr4_3:58740197-58740216 None:intergenic 35.0%
ACAATGTGAATGTGAATGCA+TGG - chr4_3:58740210-58740229 None:intergenic 35.0%
!! TTTTGTAAGGTGCTTTTGTG+AGG - chr4_3:58740266-58740285 None:intergenic 35.0%
!!! AAGACTAGTCTTTTTTGAGG+TGG - chr4_3:58740353-58740372 None:intergenic 35.0%
!!! CCTAAGACTAGTCTTTTTTG+AGG - chr4_3:58740356-58740375 None:intergenic 35.0%
!! CCTCAAAAAAGACTAGTCTT+AGG + chr4_3:58740353-58740372 Msa0651340:CDS 35.0%
TAGAACCCCATTGAAGAATA+GGG - chr4_3:58740394-58740413 None:intergenic 35.0%
TTAGAACCCCATTGAAGAAT+AGG - chr4_3:58740395-58740414 None:intergenic 35.0%
TTACATAGTCCAACAATTGG+AGG - chr4_3:58740606-58740625 None:intergenic 35.0%
AGAACAGCATAAATAAGTGG+AGG - chr4_3:58740721-58740740 None:intergenic 35.0%
CCAAGAACAGCATAAATAAG+TGG - chr4_3:58740724-58740743 None:intergenic 35.0%
CCACTTATTTATGCTGTTCT+TGG + chr4_3:58740721-58740740 Msa0651340:CDS 35.0%
ACAAGTGAAGCAATAGAAAC+AGG - chr4_3:58740772-58740791 None:intergenic 35.0%
!!! CTTACTTCAACCTTTTTTGC+TGG + chr4_3:58740859-58740878 Msa0651340:CDS 35.0%
AAGCTTCACTAGGAATTCTA+AGG + chr4_3:58740890-58740909 Msa0651340:CDS 35.0%
ATCTTAATTGGATTCATGGC+TGG + chr4_3:58741047-58741066 Msa0651340:CDS 35.0%
CAACAACTTAAGAGCTTACT+TGG + chr4_3:58741092-58741111 Msa0651340:CDS 35.0%
TGGAAAACAGAACTCATAAC+AGG - chr4_3:58741152-58741171 None:intergenic 35.0%
AGCATGGCACATATGTATAA+GGG - chr4_3:58741239-58741258 None:intergenic 35.0%
TAGCATGGCACATATGTATA+AGG - chr4_3:58741240-58741259 None:intergenic 35.0%
ATTATGAATGTGTCAGTGTG+TGG - chr4_3:58741370-58741389 None:intergenic 35.0%
TCATGGCAAACAATAGTGAT+GGG + chr4_3:58741492-58741511 Msa0651340:CDS 35.0%
GTATACTTACACGCAGAAAA+TGG - chr4_3:58741667-58741686 None:intergenic 35.0%
!! GGCCTTTTCCTATTTCTTAA+GGG - chr4_3:58741689-58741708 None:intergenic 35.0%
!! TGGCCTTTTCCTATTTCTTA+AGG - chr4_3:58741690-58741709 None:intergenic 35.0%
AGTAAAAGTCGAAACGGAAA+TGG - chr4_3:58742016-58742035 None:intergenic 35.0%
! TCACATGAGAGTATGTTTAG+AGG + chr4_3:58742409-58742428 Msa0651340:intron 35.0%
! CACATGAGAGTATGTTTAGA+GGG + chr4_3:58742410-58742429 Msa0651340:intron 35.0%
GAGTATATCAGTCAAAAACG+AGG + chr4_3:58742462-58742481 Msa0651340:intron 35.0%
ATATCAGTCAAAAACGAGGT+TGG + chr4_3:58742466-58742485 Msa0651340:intron 35.0%
CGTTAATTGCTCTGTCAAAA+TGG + chr4_3:58742505-58742524 Msa0651340:intron 35.0%
CAGCCCATAGTTCTTAAAAA+CGG - chr4_3:58742536-58742555 None:intergenic 35.0%
!!! AAAGCTAAAATCGCCGATTT+TGG + chr4_3:58743296-58743315 Msa0651340:intron 35.0%
ATAGATCTAGGGACCAAAAT+CGG - chr4_3:58743312-58743331 None:intergenic 35.0%
TGGTCCCTAGATCTATTTAA+TGG + chr4_3:58743316-58743335 Msa0651340:intron 35.0%
CCCTAGATCTATTTAATGGT+AGG + chr4_3:58743320-58743339 Msa0651340:intron 35.0%
! GATTTTGGGCCTATTTGTTT+TGG - chr4_3:58743702-58743721 None:intergenic 35.0%
ATTACGTATGTGTCTTGCAA+AGG - chr4_3:58743890-58743909 None:intergenic 35.0%
ATAGTAGCTAGAATTTCACC+CGG + chr4_3:58744125-58744144 Msa0651340:intron 35.0%
GAGATTATGACACACATAAG+AGG - chr4_3:58744629-58744648 None:intergenic 35.0%
! TCTTCTGTGTTTTGCAATCA+AGG + chr4_3:58744652-58744671 Msa0651340:CDS 35.0%
AAATTTCATGGAAGTCACCT+TGG + chr4_3:58744880-58744899 Msa0651340:CDS 35.0%
GATATTTATGCGTGCATAGT+AGG + chr4_3:58745031-58745050 Msa0651340:intron 35.0%
!! GTCAAATACACTAGTCTTCT+CGG - chr4_3:58745377-58745396 None:intergenic 35.0%
AGACTAGTGTATTTGACTCA+TGG + chr4_3:58745380-58745399 Msa0651340:intron 35.0%
TCAGCTGTTAATAACAATGC+AGG + chr4_3:58745460-58745479 Msa0651340:CDS 35.0%
GGAACAATGGCATAAGAAAA+AGG - chr4_3:58745540-58745559 None:intergenic 35.0%
TTAGGTGTGTATTGGAACAA+TGG - chr4_3:58745553-58745572 None:intergenic 35.0%
AAAAACGACTCCAAAGAAAG+CGG - chr4_3:58745683-58745702 None:intergenic 35.0%
! GTTTTTATCTCAGTCCAGTT+AGG + chr4_3:58745697-58745716 Msa0651340:CDS 35.0%
GTCATCTCTTGTCAATCAAA+AGG - chr4_3:58745817-58745836 None:intergenic 35.0%
AGATGACAATGCTATTGATC+AGG + chr4_3:58745830-58745849 Msa0651340:intron 35.0%
!! TTTTAGGCCTTGTAATTTGC+AGG - chr4_3:58745881-58745900 None:intergenic 35.0%
AAGGCCTAAAACAGTAATGA+TGG + chr4_3:58745890-58745909 Msa0651340:CDS 35.0%
AGGCCTAAAACAGTAATGAT+GGG + chr4_3:58745891-58745910 Msa0651340:CDS 35.0%
! TTCCCCATCATTACTGTTTT+AGG - chr4_3:58745897-58745916 None:intergenic 35.0%
! TAATGATGGGGAATATACCA+GGG + chr4_3:58745904-58745923 Msa0651340:CDS 35.0%
TTTCTATATATGTCTGTCCC+TGG - chr4_3:58745924-58745943 None:intergenic 35.0%
ATGCTCAAAATAAGAAAGCC+TGG - chr4_3:58745978-58745997 None:intergenic 35.0%
ACATCACATATCTCAATGAC+AGG + chr4_3:58746021-58746040 Msa0651340:CDS 35.0%
! ACTCTTCTAAGTGTTATTGC+TGG + chr4_3:58746363-58746382 Msa0651340:intron 35.0%
! TCTAAGTGTTATTGCTGGAA+TGG + chr4_3:58746368-58746387 Msa0651340:intron 35.0%
!! AAGTGGAATCTCACTTTTCA+AGG + chr4_3:58746528-58746547 Msa0651340:CDS 35.0%
CAAGGAGTTAAAAGCAACAA+TGG + chr4_3:58746546-58746565 Msa0651340:CDS 35.0%
AAAGCAACAATGGAAAAGAG+GGG + chr4_3:58746556-58746575 Msa0651340:CDS 35.0%
! TTTCAGCTTTTCTATGACCT+CGG - chr4_3:58746713-58746732 None:intergenic 35.0%
CAATAGTGAGACCAGAAACA+AGG - chr4_3:58740445-58740464 None:intergenic 40.0%
AATTTGACAAACCTGTGGGA+TGG - chr4_3:58740477-58740496 None:intergenic 40.0%
GCAAATCTTCCTCCAATTGT+TGG + chr4_3:58740594-58740613 Msa0651340:CDS 40.0%
ATGCTGTTCTTGGAAGTTCA+AGG + chr4_3:58740731-58740750 Msa0651340:CDS 40.0%
TGCTGTTCTTGGAAGTTCAA+GGG + chr4_3:58740732-58740751 Msa0651340:CDS 40.0%
GCTAGTTGAAGAAACAGAAC+AGG - chr4_3:58740838-58740857 None:intergenic 40.0%
GGTCTATTTCAAGCTTCACT+AGG + chr4_3:58740880-58740899 Msa0651340:CDS 40.0%
! TGAGTTTAGCTCAGTTGGTA+GGG + chr4_3:58741285-58741304 Msa0651340:intron 40.0%
AAGGTTCAGAGTTCAAACCT+CGG + chr4_3:58741326-58741345 Msa0651340:intron 40.0%
!!! GTTTTTTTGTGCAGTGGTCA+TGG + chr4_3:58741475-58741494 Msa0651340:intron 40.0%
GTCATGGCAAACAATAGTGA+TGG + chr4_3:58741491-58741510 Msa0651340:CDS 40.0%
! AGTGATGGGAATTTGCTTCT+TGG + chr4_3:58741506-58741525 Msa0651340:CDS 40.0%
TACACGCAGAAAATGGACAA+GGG - chr4_3:58741660-58741679 None:intergenic 40.0%
TTACACGCAGAAAATGGACA+AGG - chr4_3:58741661-58741680 None:intergenic 40.0%
!! AAAACGAGGTTGGCTTGATT+TGG + chr4_3:58742476-58742495 Msa0651340:intron 40.0%
!! CGTTTTTAAGAACTATGGGC+TGG + chr4_3:58742534-58742553 Msa0651340:intron 40.0%
CTGGTTCAAGTCAAGTTTCA+AGG + chr4_3:58742553-58742572 Msa0651340:intron 40.0%
GTTCAAGTCAAGTTTCAAGG+TGG + chr4_3:58742556-58742575 Msa0651340:intron 40.0%
!! ATCATTTTGGAGGTCAGACA+AGG + chr4_3:58743351-58743370 Msa0651340:intron 40.0%
TGTGTCTTGCAAAGGTCATA+AGG - chr4_3:58743882-58743901 None:intergenic 40.0%
ATAAATGCATGCAGAGCATG+AGG + chr4_3:58744570-58744589 Msa0651340:intron 40.0%
TGAGGAAACCAAAGCTATTC+TGG + chr4_3:58744588-58744607 Msa0651340:CDS 40.0%
GAGGAAACCAAAGCTATTCT+GGG + chr4_3:58744589-58744608 Msa0651340:CDS 40.0%
GCAATCAAGGCTCAAAATCA+TGG + chr4_3:58744665-58744684 Msa0651340:CDS 40.0%
TTCTGATGTGGTTCCTAGAT+TGG + chr4_3:58744814-58744833 Msa0651340:intron 40.0%
GTGAAAACTGGCATTATCAC+TGG + chr4_3:58744910-58744929 Msa0651340:CDS 40.0%
!! AAACAGGAAGGTATTGCAGT+AGG + chr4_3:58745101-58745120 Msa0651340:intron 40.0%
ATTGGGTGTATGAATGTGGT+TGG + chr4_3:58745182-58745201 Msa0651340:CDS 40.0%
TGTTACATAGCAGGAAGTGA+AGG - chr4_3:58745210-58745229 None:intergenic 40.0%
ACTTCCTGCTATGTAACAAC+AGG + chr4_3:58745212-58745231 Msa0651340:CDS 40.0%
AGAACCTGTTGTTACATAGC+AGG - chr4_3:58745219-58745238 None:intergenic 40.0%
ATTGCGCCCAATACAACATT+AGG - chr4_3:58745571-58745590 None:intergenic 40.0%
ATCATAGTCACAGCAGTGAT+TGG + chr4_3:58745589-58745608 Msa0651340:CDS 40.0%
AGAAAGCGGTTAACATCACA+AGG - chr4_3:58745669-58745688 None:intergenic 40.0%
GTGATGTTAACCGCTTTCTT+TGG + chr4_3:58745670-58745689 Msa0651340:CDS 40.0%
GACAATGCTATTGATCAGGT+TGG + chr4_3:58745834-58745853 Msa0651340:intron 40.0%
GGATACTCCTGCAAATTACA+AGG + chr4_3:58745871-58745890 Msa0651340:CDS 40.0%
GGCCTAAAACAGTAATGATG+GGG + chr4_3:58745892-58745911 Msa0651340:CDS 40.0%
! GTAATGATGGGGAATATACC+AGG + chr4_3:58745903-58745922 Msa0651340:CDS 40.0%
ATCATATTAGGACGCTACGA+TGG + chr4_3:58746135-58746154 Msa0651340:intron 40.0%
!! ACGATGGATTGAAGAAGAAG+AGG + chr4_3:58746151-58746170 Msa0651340:CDS 40.0%
! ACACTCAAGCCTTCGATTTT+TGG + chr4_3:58746190-58746209 Msa0651340:CDS 40.0%
TTTCCAGGACCAAAAATCGA+AGG - chr4_3:58746202-58746221 None:intergenic 40.0%
!! TTTTTGGTCCTGGAAATGTC+AGG + chr4_3:58746206-58746225 Msa0651340:CDS 40.0%
ACACATTACCTGACATTTCC+AGG - chr4_3:58746217-58746236 None:intergenic 40.0%
! AAGTGTTATTGCTGGAATGG+TGG + chr4_3:58746371-58746390 Msa0651340:intron 40.0%
TGAGATTCCACTTGTGTCAA+TGG - chr4_3:58746521-58746540 None:intergenic 40.0%
TGTATTCTGACAGCTTGTGT+TGG + chr4_3:58746675-58746694 Msa0651340:intron 40.0%
! GACAACCTTTTCTTGACAGT+TGG + chr4_3:58746766-58746785 Msa0651340:CDS 40.0%
!! TGTAAGGTGCTTTTGTGAGG+TGG - chr4_3:58740263-58740282 None:intergenic 45.0%
ATTGGCGTAGAGGATCATCA+GGG - chr4_3:58740319-58740338 None:intergenic 45.0%
AATTGGCGTAGAGGATCATC+AGG - chr4_3:58740320-58740339 None:intergenic 45.0%
GATCCTCTACGCCAATTCAA+AGG + chr4_3:58740323-58740342 Msa0651340:CDS 45.0%
TGTCCTTTGAATTGGCGTAG+AGG - chr4_3:58740329-58740348 None:intergenic 45.0%
GAGGTGGTTGTCCTTTGAAT+TGG - chr4_3:58740337-58740356 None:intergenic 45.0%
TGGAGGAAGATTTGCAAGCT+TGG - chr4_3:58740589-58740608 None:intergenic 45.0%
AGTTCAAGGGATCTAGCAGT+AGG + chr4_3:58740745-58740764 Msa0651340:CDS 45.0%
AACAGAACAGGTTCTGCTGA+AGG - chr4_3:58740826-58740845 None:intergenic 45.0%
! TCTCGTGAGTTTAGCTCAGT+TGG + chr4_3:58741280-58741299 Msa0651340:intron 45.0%
! GTGAGTTTAGCTCAGTTGGT+AGG + chr4_3:58741284-58741303 Msa0651340:intron 45.0%
TGACACAGTTTGATCAACCC+TGG + chr4_3:58741790-58741809 Msa0651340:intron 45.0%
GACACAGTTTGATCAACCCT+GGG + chr4_3:58741791-58741810 Msa0651340:intron 45.0%
! AGGACAAGCGGTTTGAGTTT+GGG - chr4_3:58741832-58741851 None:intergenic 45.0%
! TAGGACAAGCGGTTTGAGTT+TGG - chr4_3:58741833-58741852 None:intergenic 45.0%
AGGGATTGAAGTTCGAACTC+CGG - chr4_3:58744147-58744166 None:intergenic 45.0%
! CAGTTTTCACGACTAGACCA+AGG - chr4_3:58744900-58744919 None:intergenic 45.0%
CTTGGTCTAGTCGTGAAAAC+TGG + chr4_3:58744898-58744917 Msa0651340:CDS 45.0%
!! AGGAAGGTATTGCAGTAGGA+AGG + chr4_3:58745105-58745124 Msa0651340:intron 45.0%
!! AGCTCTGGGAAACTACAAAG+TGG + chr4_3:58745136-58745155 Msa0651340:CDS 45.0%
CTGGGAAACTACAAAGTGGA+TGG + chr4_3:58745140-58745159 Msa0651340:CDS 45.0%
GGCAATTGGGTGTATGAATG+TGG + chr4_3:58745178-58745197 Msa0651340:CDS 45.0%
AGTAATGTCCGTGACAGTGA+TGG + chr4_3:58745507-58745526 Msa0651340:CDS 45.0%
GTCTATCTTCCAAATGTGGC+AGG - chr4_3:58745635-58745654 None:intergenic 45.0%
ATGAACTCACTGCAACAGCA+AGG - chr4_3:58745723-58745742 None:intergenic 45.0%
AGGGAAGCTACAAGAATACC+AGG + chr4_3:58745957-58745976 Msa0651340:CDS 45.0%
!!! AAGCCTTCGATTTTTGGTCC+TGG + chr4_3:58746196-58746215 Msa0651340:CDS 45.0%
!! AATGGAAAAGAGGGGTGTTG+AGG + chr4_3:58746564-58746583 Msa0651340:intron 45.0%
! TTTTCTATGACCTCGGCAAG+AGG - chr4_3:58746706-58746725 None:intergenic 45.0%
CCTCTCCAACTGTCAAGAAA+AGG - chr4_3:58746774-58746793 None:intergenic 45.0%
! CCTTTTCTTGACAGTTGGAG+AGG + chr4_3:58746771-58746790 Msa0651340:CDS 45.0%
TGTATGTGCTTCTTCCGTCT+TGG - chr4_3:58746836-58746855 None:intergenic 45.0%
!! TTAAAAATAAAAAAAAAGAT+AGG - chr4_3:58742928-58742947 None:intergenic 5.0%
!!! CTTTTTTTTTATTTTTAAAA+AGG + chr4_3:58742930-58742949 Msa0651340:intron 5.0%
!! TGTGAGGTGGTGGAACAACT+TGG - chr4_3:58740250-58740269 None:intergenic 50.0%
!! AAGGTGCTTTTGTGAGGTGG+TGG - chr4_3:58740260-58740279 None:intergenic 50.0%
! TGTGTCAGTGTGTAGCTCTG+AGG - chr4_3:58741777-58741796 None:intergenic 50.0%
GTCAGTGAATGAACGTCCCA+GGG - chr4_3:58741810-58741829 None:intergenic 50.0%
GTCAGTGTCTATGTCGTGTC+TGG + chr4_3:58741915-58741934 Msa0651340:intron 50.0%
GGGATTGAAGTTCGAACTCC+GGG - chr4_3:58744146-58744165 None:intergenic 50.0%
GCAGAGACCCAGAATAGCTT+TGG - chr4_3:58744599-58744618 None:intergenic 50.0%
AAGCTATTCTGGGTCTCTGC+TGG + chr4_3:58744599-58744618 Msa0651340:CDS 50.0%
AGGAAGGACATTTGCAGCTC+TGG + chr4_3:58745121-58745140 Msa0651340:CDS 50.0%
GGAAGGACATTTGCAGCTCT+GGG + chr4_3:58745122-58745141 Msa0651340:CDS 50.0%
GAGTGTCACCATCACTGTCA+CGG - chr4_3:58745518-58745537 None:intergenic 50.0%
!! AAAAGAGGGGTGTTGAGGCA+AGG + chr4_3:58746569-58746588 Msa0651340:intron 50.0%
GAAGAGCCAGTCAACCAAGA+CGG + chr4_3:58746819-58746838 Msa0651340:CDS 50.0%
CTTCTTCCGTCTTGGTTGAC+TGG - chr4_3:58746828-58746847 None:intergenic 50.0%
! TGCTAGCTTAGCCATCCCAC+AGG + chr4_3:58740463-58740482 Msa0651340:CDS 55.0%
GGTCAGTGAATGAACGTCCC+AGG - chr4_3:58741811-58741830 None:intergenic 55.0%
CTTCTCTGGCACAGAGTGCA+TGG + chr4_3:58744513-58744532 Msa0651340:intron 55.0%
! TGAGTTGGAGACGAGAGCAG+TGG - chr4_3:58744706-58744725 None:intergenic 55.0%
AGGCAGCGGGGATATCAATG+AGG - chr4_3:58745615-58745634 None:intergenic 55.0%
TTCCAAATGTGGCAGGCAGC+GGG - chr4_3:58745628-58745647 None:intergenic 55.0%
CTTCCAAATGTGGCAGGCAG+CGG - chr4_3:58745629-58745648 None:intergenic 55.0%
CTGCAACAGCAAGGCCTAAC+TGG - chr4_3:58745714-58745733 None:intergenic 55.0%
TGCTGGAATGGTGGCACCTA+TGG + chr4_3:58746380-58746399 Msa0651340:intron 55.0%
GTGAGCGCCATTGACACAAG+TGG + chr4_3:58746511-58746530 Msa0651340:CDS 55.0%
! GTTGGTGAATCCTCTTGCCG+AGG + chr4_3:58746693-58746712 Msa0651340:CDS 55.0%
CTTGACAGTTGGAGAGGCTG+TGG + chr4_3:58746777-58746796 Msa0651340:CDS 55.0%
TCCAAATGTGGCAGGCAGCG+GGG - chr4_3:58745627-58745646 None:intergenic 60.0%
TCCCCGCTGCCTGCCACATT+TGG + chr4_3:58745623-58745642 Msa0651340:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58739973 58747195 58739973 ID=Msa0651340;Name=Msa0651340
chr4_3 mRNA 58739973 58747195 58739973 ID=Msa0651340-mRNA-1;Parent=Msa0651340;Name=Msa0651340-mRNA-1;_AED=0.33;_eAED=0.33;_QI=215|0.69|0.78|1|1|1|14|322|666
chr4_3 exon 58739973 58740484 58739973 ID=Msa0651340-mRNA-1:exon:15595;Parent=Msa0651340-mRNA-1
chr4_3 exon 58740573 58740621 58740573 ID=Msa0651340-mRNA-1:exon:15596;Parent=Msa0651340-mRNA-1
chr4_3 exon 58740704 58740911 58740704 ID=Msa0651340-mRNA-1:exon:15597;Parent=Msa0651340-mRNA-1
chr4_3 exon 58741013 58741158 58741013 ID=Msa0651340-mRNA-1:exon:15598;Parent=Msa0651340-mRNA-1
chr4_3 exon 58741489 58741554 58741489 ID=Msa0651340-mRNA-1:exon:15599;Parent=Msa0651340-mRNA-1
chr4_3 exon 58741618 58741676 58741618 ID=Msa0651340-mRNA-1:exon:15600;Parent=Msa0651340-mRNA-1
chr4_3 exon 58744584 58744697 58744584 ID=Msa0651340-mRNA-1:exon:15601;Parent=Msa0651340-mRNA-1
chr4_3 exon 58744832 58744948 58744832 ID=Msa0651340-mRNA-1:exon:15602;Parent=Msa0651340-mRNA-1
chr4_3 exon 58745107 58745233 58745107 ID=Msa0651340-mRNA-1:exon:15603;Parent=Msa0651340-mRNA-1
chr4_3 exon 58745446 58745732 58745446 ID=Msa0651340-mRNA-1:exon:15604;Parent=Msa0651340-mRNA-1
chr4_3 exon 58745852 58746042 58745852 ID=Msa0651340-mRNA-1:exon:15605;Parent=Msa0651340-mRNA-1
chr4_3 exon 58746145 58746227 58746145 ID=Msa0651340-mRNA-1:exon:15606;Parent=Msa0651340-mRNA-1
chr4_3 exon 58746509 58746579 58746509 ID=Msa0651340-mRNA-1:exon:15607;Parent=Msa0651340-mRNA-1
chr4_3 exon 58746688 58747195 58746688 ID=Msa0651340-mRNA-1:exon:15608;Parent=Msa0651340-mRNA-1
chr4_3 five_prime_UTR 58739973 58740187 58739973 ID=Msa0651340-mRNA-1:five_prime_utr;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58740188 58740484 58740188 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58740573 58740621 58740573 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58740704 58740911 58740704 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58741013 58741158 58741013 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58741489 58741554 58741489 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58741618 58741676 58741618 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58744584 58744697 58744584 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58744832 58744948 58744832 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58745107 58745233 58745107 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58745446 58745732 58745446 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58745852 58746042 58745852 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58746145 58746227 58746145 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58746509 58746579 58746509 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 CDS 58746688 58746873 58746688 ID=Msa0651340-mRNA-1:cds;Parent=Msa0651340-mRNA-1
chr4_3 three_prime_UTR 58746874 58747195 58746874 ID=Msa0651340-mRNA-1:three_prime_utr;Parent=Msa0651340-mRNA-1
Gene Sequence

>Msa0651340

ATGGATCCTAATACTTTCTCCATGCATTCACATTCACATTGTGTACAAATGGAAATACACCAAGTTGTTCCACCACCTCACAAAAGCACCTTACAAAAATTTGAAGTTAGGCTCAAAGAAACTTTTTTCCCTGATGATCCTCTACGCCAATTCAAAGGACAACCACCTCAAAAAAGACTAGTCTTAGGAGCTAAATATTTTTTCCCTATTCTTCAATGGGGTTCTAATTATAGCTTCCAAATCTTTAAATCTGACCTTGTTTCTGGTCTCACTATTGCTAGCTTAGCCATCCCACAGGGAATTAGTTATGCCAAGCTTGCAAATCTTCCTCCAATTGTTGGACTATATTCTAGTTTTGTACCTCCACTTATTTATGCTGTTCTTGGAAGTTCAAGGGATCTAGCAGTAGGACCTGTTTCTATTGCTTCACTTGTTTTAGGATCTATGCTTAGACAAGAAGTGTCTCCTTCAGCAGAACCTGTTCTGTTTCTTCAACTAGCTCTTACTTCAACCTTTTTTGCTGGTCTATTTCAAGCTTCACTAGGAATTCTAAGGCTAGGATTTATCATTGATTTTTTATCCAAAGCAATCTTAATTGGATTCATGGCTGGAGCTGCTATAATTGTGTCTTTGCAACAACTTAAGAGCTTACTTGGAATCACACATTTCACTCAACAAATGAGTCTTGTTCCTGTTATGATGGTCATGGCAAACAATAGTGATGGGAATTTGCTTCTTGGTGCTACTACTAATAGCAAGACACGTTTTACTAGAATAGTAGAATTTTCTTTCTACAATCTCATGGCCCTTGTCCATTTTCTGCGTAGCATGAGGAAACCAAAGCTATTCTGGGTCTCTGCTGGAGCTCCTCTTATGTGTGTCATAATCTCTACTCTTCTGTGTTTTGCAATCAAGGCTCAAAATCATGGCATCAGTTTAATTGGAAAATTGCATGAAGGAATAAATCCTTCTTCATGGAATATGTTGAAATTTCATGGAAGTCACCTTGGTCTAGTCGTGAAAACTGGCATTATCACTGGCATTTTGTCCCTCACTGAAGGTATTGCAGTAGGAAGGACATTTGCAGCTCTGGGAAACTACAAAGTGGATGGAAATAAAGAAATGATGGCAATTGGGTGTATGAATGTGGTTGGATCCTTCACTTCCTGCTATGTAACAACAGGTGCTTTCTCTCGTTCAGCTGTTAATAACAATGCAGGAGCAAAAACAGCAGCTTCGAATATAGTAATGTCCGTGACAGTGATGGTGACACTCCTTTTTCTTATGCCATTGTTCCAATACACACCTAATGTTGTATTGGGCGCAATCATAGTCACAGCAGTGATTGGCCTCATTGATATCCCCGCTGCCTGCCACATTTGGAAGATAGACAAATTCGACTTCCTTGTGATGTTAACCGCTTTCTTTGGAGTCGTTTTTATCTCAGTCCAGTTAGGCCTTGCTGTTGCAGTTGGATTATCAACTTTTAGGATACTCCTGCAAATTACAAGGCCTAAAACAGTAATGATGGGGAATATACCAGGGACAGACATATATAGAAATCTTCATCAATACAGGGAAGCTACAAGAATACCAGGCTTTCTTATTTTGAGCATTGAAGCTCCTATCAATTTTGCAAACATCACATATCTCAATGACAGGACGCTACGATGGATTGAAGAAGAAGAGGAAGATAACATAAAGGAACACTCAAGCCTTCGATTTTTGGTCCTGGAAATGTCAGCTGTGAGCGCCATTGACACAAGTGGAATCTCACTTTTCAAGGAGTTAAAAGCAACAATGGAAAAGAGGGGTCTTGTGTTGGTGAATCCTCTTGCCGAGGTCATAGAAAAGCTGAAAAAAGCAGACGAATCTAATACATTCATAAGAGCAGACAACCTTTTCTTGACAGTTGGAGAGGCTGTGGCTTCACTTTCATCAACAATGAAGAGCCAGTCAACCAAGACGGAAGAAGCACATACAATCGTGCCACATTACTGA

Protein sequence

>Msa0651340

MDPNTFSMHSHSHCVQMEIHQVVPPPHKSTLQKFEVRLKETFFPDDPLRQFKGQPPQKRLVLGAKYFFPILQWGSNYSFQIFKSDLVSGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYAVLGSSRDLAVGPVSIASLVLGSMLRQEVSPSAEPVLFLQLALTSTFFAGLFQASLGILRLGFIIDFLSKAILIGFMAGAAIIVSLQQLKSLLGITHFTQQMSLVPVMMVMANNSDGNLLLGATTNSKTRFTRIVEFSFYNLMALVHFLRSMRKPKLFWVSAGAPLMCVIISTLLCFAIKAQNHGISLIGKLHEGINPSSWNMLKFHGSHLGLVVKTGIITGILSLTEGIAVGRTFAALGNYKVDGNKEMMAIGCMNVVGSFTSCYVTTGAFSRSAVNNNAGAKTAASNIVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDIPAACHIWKIDKFDFLVMLTAFFGVVFISVQLGLAVAVGLSTFRILLQITRPKTVMMGNIPGTDIYRNLHQYREATRIPGFLILSIEAPINFANITYLNDRTLRWIEEEEEDNIKEHSSLRFLVLEMSAVSAIDTSGISLFKELKATMEKRGLVLVNPLAEVIEKLKKADESNTFIRADNLFLTVGEAVASLSSTMKSQSTKTEEAHTIVPHY*