AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130600 MtrunA17_Chr1g0198921 98.941 1039 11 0 1 1039 1 1039 0.0 2125
Msa0130600 MtrunA17_Chr0c01g0489521 77.509 1116 168 9 1 1039 43 1152 0.0 1701
Msa0130600 MtrunA17_Chr8g0360571 46.602 618 281 5 455 1039 366 967 2.23e-180 551
Msa0130600 MtrunA17_Chr8g0360571 38.603 272 154 5 71 329 77 348 2.46e-48 187
Msa0130600 MtrunA17_Chr4g0041131 45.994 624 288 5 449 1039 359 966 9.75e-180 549
Msa0130600 MtrunA17_Chr4g0041131 38.869 283 157 6 71 337 77 359 1.03e-50 194
Msa0130600 MtrunA17_Chr2g0325821 45.353 624 292 5 449 1039 359 966 2.56e-176 540
Msa0130600 MtrunA17_Chr2g0325821 39.576 283 155 6 71 337 77 359 2.29e-51 196
Msa0130600 MtrunA17_Chr2g0315891 45.806 620 283 6 455 1039 365 966 1.59e-174 535
Msa0130600 MtrunA17_Chr2g0315891 38.603 272 154 5 71 329 76 347 2.77e-48 186
Msa0130600 MtrunA17_Chr1g0148101 35.204 392 170 11 551 940 1 310 4.37e-60 208
Msa0130600 MtrunA17_Chr7g0238121 64.486 107 16 2 189 280 1 100 2.83e-36 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130600 AT1G68750.1 75.985 1041 239 4 1 1039 1 1032 0.0 1597
Msa0130600 AT1G53310.2 46.602 618 281 5 455 1039 366 967 1.44e-178 546
Msa0130600 AT1G53310.2 38.079 302 163 7 71 355 77 371 3.15e-50 193
Msa0130600 AT1G53310.1 46.602 618 281 5 455 1039 366 967 1.44e-178 546
Msa0130600 AT1G53310.1 38.079 302 163 7 71 355 77 371 3.15e-50 193
Msa0130600 AT1G53310.3 46.602 618 281 5 455 1039 366 967 1.44e-178 546
Msa0130600 AT1G53310.3 38.079 302 163 7 71 355 77 371 3.15e-50 193
Msa0130600 AT2G42600.2 46.709 623 284 6 449 1039 357 963 1.72e-178 546
Msa0130600 AT2G42600.2 36.667 300 167 7 71 355 77 368 9.29e-48 185
Msa0130600 AT2G42600.1 46.709 623 284 6 449 1039 357 963 1.72e-178 546
Msa0130600 AT2G42600.1 36.667 300 167 7 71 355 77 368 9.29e-48 185
Msa0130600 AT2G42600.3 46.709 623 284 6 449 1039 357 963 1.72e-178 546
Msa0130600 AT2G42600.3 36.667 300 167 7 71 355 77 368 9.29e-48 185
Msa0130600 AT3G14940.1 46.850 619 279 6 455 1039 366 968 2.58e-176 540
Msa0130600 AT3G14940.1 39.073 302 160 8 71 355 77 371 1.71e-51 197
Msa0130600 AT3G14940.2 46.850 619 279 6 455 1039 366 968 2.58e-176 540
Msa0130600 AT3G14940.2 39.073 302 160 8 71 355 77 371 1.71e-51 197

Find 292 sgRNAs with CRISPR-Local

Find 568 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGCATCTCTGAGTTTA+AGG 0.106305 1_3:-61013767 None:intergenic
CATCCAAGTTCCAAACTTTA+TGG 0.132919 1_3:-61007700 None:intergenic
GCTTTGCTTATCACCGTAAA+TGG 0.145481 1_3:+61013783 Msa0130600:CDS
TGATGCAGTTACAACATATT+TGG 0.164824 1_3:+61010388 Msa0130600:CDS
CTTCAACATGTAGCATCTTT+TGG 0.216012 1_3:+61007099 Msa0130600:intron
AGTTACAACATATTTGGATA+TGG 0.231474 1_3:+61010394 Msa0130600:CDS
TTTGTGTTCTTCCTTCTTGC+AGG 0.245866 1_3:-61013297 None:intergenic
ATGGTTGGATATTCTGATTC+TGG 0.258407 1_3:+61012277 Msa0130600:CDS
ATTAGCATTTCTCGATCTTC+AGG 0.268596 1_3:-61007148 None:intergenic
CTCTAAAAGCTTCTGAAAAC+TGG 0.293404 1_3:-61009296 None:intergenic
CAGTGTTGTGGTGTGGAAAA+AGG 0.298229 1_3:-61005432 None:intergenic
TCCCACCCCGAGATGAAAAT+TGG 0.299079 1_3:+61013136 Msa0130600:CDS
GAAATGGTAGAGGCTAAGTT+TGG 0.300010 1_3:+61013039 Msa0130600:CDS
TGAAACAGCTGACCAGCTTT+TGG 0.305920 1_3:+61010061 Msa0130600:CDS
CCCAGCAGCAATCCCATTTA+CGG 0.307234 1_3:-61013796 None:intergenic
ATGGGATGAAGAAAAGAAAT+TGG 0.307389 1_3:+61010430 Msa0130600:CDS
ATTGTTCGGGCAATCAAATA+TGG 0.310214 1_3:+61014083 Msa0130600:three_prime_UTR
GCTTGCTGCTATTGGAGAAT+TGG 0.313039 1_3:+61011609 Msa0130600:CDS
CTTCAGCAATCATGTGGGTC+TGG 0.317808 1_3:+61010184 Msa0130600:intron
AGAAACTTCAGCAGAATAAT+AGG 0.322124 1_3:+61013646 Msa0130600:CDS
CATGAACATGAGAAATTGTT+CGG 0.325011 1_3:+61014069 Msa0130600:three_prime_UTR
CTCACCTTTGCGGTAACGTT+TGG 0.334654 1_3:-61007744 None:intergenic
GACCTTATTGAGATGGTGTT+AGG 0.335377 1_3:+61013492 Msa0130600:CDS
CTATTCCCTGGGTATTTGCT+TGG 0.336715 1_3:+61013340 Msa0130600:CDS
GTAGCTGCTTGCAATGATTA+TGG 0.337387 1_3:+61012358 Msa0130600:CDS
ATTCGTAGAGTTGCAACCTT+TGG 0.349488 1_3:+61010238 Msa0130600:CDS
CCACAGCTCCCTCAACTTGC+TGG 0.351216 1_3:+61009319 Msa0130600:CDS
TGGCTATTGACCTCTATATT+CGG 0.351376 1_3:+61008064 Msa0130600:CDS
CTGTTTCACTTCTATCTAGA+TGG 0.356352 1_3:+61008040 Msa0130600:CDS
ACTTGCACTCCCATAAAGTT+TGG 0.358450 1_3:+61007690 Msa0130600:CDS
CAGTCATTATCTTACTATGA+TGG 0.363104 1_3:+61006148 Msa0130600:CDS
GCCACTAGTTCCTGTTAGTA+TGG 0.363267 1_3:+61010484 Msa0130600:CDS
TCTCACAGGTTTGAATATAG+TGG 0.366572 1_3:+61007499 Msa0130600:intron
GGTTCGTAAAGGAGGGAATA+TGG 0.367321 1_3:+61006568 Msa0130600:CDS
CTAGCTGCATTACAGGAATC+TGG 0.367694 1_3:+61010347 Msa0130600:intron
TTCAGCAATCATGTGGGTCT+GGG 0.368013 1_3:+61010185 Msa0130600:intron
CAATCCCATGAACCTGTTGC+AGG 0.368697 1_3:+61013707 Msa0130600:CDS
AGGAAGAACACAAAGGGAAT+TGG 0.369646 1_3:+61013306 Msa0130600:CDS
TAACTGAACCAGCACCTCTT+AGG 0.373958 1_3:-61012095 None:intergenic
TTGAGAACTTACCAGATTGC+AGG 0.374921 1_3:-61014011 None:intergenic
GATGCACGGCTTGCTGCTAT+TGG 0.377320 1_3:+61011601 Msa0130600:CDS
ATCCAAGTTCCAAACTTTAT+GGG 0.378571 1_3:-61007699 None:intergenic
CTGCTTCAGGCGTGGCTTCG+TGG 0.378796 1_3:-61013245 None:intergenic
TGGCCGCTTCACTGCTGCTT+GGG 0.379895 1_3:+61012309 Msa0130600:CDS
AAACAAACCATTCACCATAA+TGG 0.382647 1_3:-61013935 None:intergenic
TTTCCCAGGACAACTCTATA+AGG 0.392064 1_3:-61009349 None:intergenic
CTTCCAGCTTGGCTCGGAGT+TGG 0.392451 1_3:+61013381 Msa0130600:CDS
AGTCTATTGATAAAAGTTTC+CGG 0.395571 1_3:-61012119 None:intergenic
CTGGCCGCTTCACTGCTGCT+TGG 0.395587 1_3:+61012308 Msa0130600:CDS
CTAGCACATGAAATTCTAGA+AGG 0.398688 1_3:+61008147 Msa0130600:CDS
TAATAGGAGCTTGAGGAGGT+TGG 0.402520 1_3:+61013662 Msa0130600:CDS
TGCTCCTTATAGAGTTGTCC+TGG 0.405365 1_3:+61009345 Msa0130600:CDS
TCTATTGTACTTTGAAAGAA+AGG 0.405607 1_3:-61013471 None:intergenic
GCTCCTCTGTTATGAATCTC+TGG 0.406497 1_3:+61010091 Msa0130600:CDS
TTGAAAGGTGCTTGTGAGAA+AGG 0.408319 1_3:+61013411 Msa0130600:CDS
CTCCCATAAAGTTTGGAACT+TGG 0.409973 1_3:+61007697 Msa0130600:CDS
CTCCACCTGCAACAGGTTCA+TGG 0.410924 1_3:-61013712 None:intergenic
AGAGCTTCGATGATGATTGT+AGG 0.410996 1_3:+61005663 Msa0130600:CDS
GCTATTCAGTCCCAACCACC+TGG 0.416046 1_3:+61012448 Msa0130600:CDS
AGGAGCCTATGTGATATCTA+TGG 0.416320 1_3:+61011433 Msa0130600:CDS
GAAACCTTCGTGCTATTCCC+TGG 0.416675 1_3:+61013328 Msa0130600:CDS
ACCGTAAATGGGATTGCTGC+TGG 0.417768 1_3:+61013795 Msa0130600:CDS
TGCTGATGTTAAAGAAGTCT+TGG 0.419254 1_3:+61011370 Msa0130600:CDS
TGTCTCACCTCCATACTAAC+AGG 0.420987 1_3:-61010494 None:intergenic
ACATGTTTACATTAGGTTGC+GGG 0.422004 1_3:+61012044 Msa0130600:intron
AAGGTTGGTATTAGCCATTA+TGG 0.423698 1_3:+61013921 Msa0130600:three_prime_UTR
TGTTACTGATACTTTAAGAC+TGG 0.424175 1_3:-61009164 None:intergenic
GTTACAACATATTTGGATAT+GGG 0.425578 1_3:+61010395 Msa0130600:CDS
GTATTAGCCATTATGGTGAA+TGG 0.426827 1_3:+61013928 Msa0130600:three_prime_UTR
TCCTTCACGGTTTCAAATAG+AGG 0.428095 1_3:-61012072 None:intergenic
GAGGTGCTGGTTCAGTTATC+CGG 0.429326 1_3:+61012100 Msa0130600:CDS
GAAAACTGGACTTTCCTGTC+TGG 0.430217 1_3:-61009282 None:intergenic
TTGCCAGTTCTGAGTGTAGT+TGG 0.430252 1_3:-61009139 None:intergenic
CTTGCTGCTATTGGAGAATT+GGG 0.430420 1_3:+61011610 Msa0130600:CDS
GAGTTGTAAGAGGGAGAAGA+TGG 0.433748 1_3:-61009223 None:intergenic
TCAGAATCTCCACCTGCAAC+AGG 0.436922 1_3:-61013719 None:intergenic
AGGCGGTGGCCCTACATATC+TGG 0.437685 1_3:+61012426 Msa0130600:CDS
AGAAATGCTAATTGAGGATC+TGG 0.437949 1_3:+61007159 Msa0130600:CDS
TGCATGTGACTATGATCCTT+TGG 0.439479 1_3:+61010031 Msa0130600:CDS
TCCCTAACACCATCTCAATA+AGG 0.439617 1_3:-61013494 None:intergenic
AACACTTCGGTCTACCGAGC+AGG 0.441668 1_3:+61013014 Msa0130600:CDS
GGCTATTGACCTCTATATTC+GGG 0.443763 1_3:+61008065 Msa0130600:CDS
GTGCTTGTGAGAAAGGTCAT+AGG 0.444464 1_3:+61013418 Msa0130600:CDS
TGAGAGAGATAACTTCAATA+TGG 0.445525 1_3:+61007309 Msa0130600:CDS
CATGGCCGTGGAGGCAGTAT+TGG 0.446124 1_3:+61012400 Msa0130600:CDS
CCAGATTTGTTCTTCCAGCT+TGG 0.448126 1_3:+61013370 Msa0130600:CDS
CCAAGCTGGAAGAACAAATC+TGG 0.448959 1_3:-61013370 None:intergenic
GGCAGTATTGGTCGAGGCGG+TGG 0.449566 1_3:+61012412 Msa0130600:CDS
CCAGCTCTAGCTTCATCAAC+TGG 0.450656 1_3:-61007365 None:intergenic
GTCTACCGAGCAGGGAGAAA+TGG 0.450962 1_3:+61013023 Msa0130600:CDS
CATAAAGTTTGGAACTTGGA+TGG 0.451055 1_3:+61007701 Msa0130600:CDS
TTCCGAATCGCTGCTGAACT+AGG 0.451804 1_3:+61011398 Msa0130600:CDS
TGTTCAGAAGCAGCGTTAAC+CGG 0.452536 1_3:-61013829 None:intergenic
ACTGTGTTGTAAAGATCATC+CGG 0.454214 1_3:-61006650 None:intergenic
AGGAAGCCGAGCTCTGCTTC+AGG 0.462959 1_3:-61013258 None:intergenic
CATCACAGACCCAGGTGGTT+GGG 0.463137 1_3:-61012458 None:intergenic
CTTTGCTTATCACCGTAAAT+GGG 0.463812 1_3:+61013784 Msa0130600:CDS
ATATGGGTACTTATAGTGAA+TGG 0.464922 1_3:+61010411 Msa0130600:CDS
TACAATCATCATCGAAGCTC+TGG 0.466446 1_3:-61005661 None:intergenic
ATGTTAGGTTTGTTCAGTAA+AGG 0.468971 1_3:+61013902 Msa0130600:three_prime_UTR
CCTGGGAAATGTAAAGGATA+AGG 0.469149 1_3:+61009363 Msa0130600:CDS
GGCAGAGTGCATGTAATATG+AGG 0.469229 1_3:+61006024 Msa0130600:intron
CACTGCAATACAAACACATT+CGG 0.470757 1_3:+61006973 Msa0130600:CDS
AGTCATTATCTTACTATGAT+GGG 0.472061 1_3:+61006149 Msa0130600:CDS
GGAGCAGAGGTTCCAAAAGC+TGG 0.475317 1_3:-61010073 None:intergenic
TGAAAATTGGCGTAGTCTCA+TGG 0.476454 1_3:+61013149 Msa0130600:CDS
TTGTGTTCTTCCTTCTTGCA+GGG 0.476962 1_3:-61013296 None:intergenic
TCCCTAGTTCAGCAGCGATT+CGG 0.477789 1_3:-61011400 None:intergenic
TAAAAGCAATGTACAAAGAA+TGG 0.478411 1_3:+61013448 Msa0130600:CDS
TGTGCAGGGTGGAGTTTCCC+CGG 0.478623 1_3:+61006631 Msa0130600:CDS
GCTTGGCTCGGAGTTGGAGC+AGG 0.478720 1_3:+61013387 Msa0130600:CDS
GAGCAATTCCAGCAAGTTGA+GGG 0.480050 1_3:-61009327 None:intergenic
TTTGTTCTTCCAGCTTGGCT+CGG 0.482407 1_3:+61013375 Msa0130600:CDS
AAGACTTCTTTAACATCAGC+AGG 0.482543 1_3:-61011368 None:intergenic
AAAACTGGACTTTCCTGTCT+GGG 0.483522 1_3:-61009281 None:intergenic
AGGTTCATGGGATTGAGAAA+TGG 0.484409 1_3:-61013699 None:intergenic
CGGTTGACTAGAGTTGTAAG+AGG 0.484510 1_3:-61009233 None:intergenic
GAGGGTAAATGAGCTCTAGC+TGG 0.485019 1_3:-61008687 None:intergenic
TTAGCATTTCTCGATCTTCA+GGG 0.485732 1_3:-61007147 None:intergenic
ACCTTATTGAGATGGTGTTA+GGG 0.488944 1_3:+61013493 Msa0130600:CDS
GTTCTGAGTGTAGTTGGACT+TGG 0.489764 1_3:-61009133 None:intergenic
AATTGATCTACCTTGTGATC+AGG 0.496505 1_3:-61009030 None:intergenic
TTGGGAACTTTACAAAGCTC+AGG 0.497178 1_3:+61012327 Msa0130600:CDS
CAGGGCGACTACCTATGTTC+AGG 0.498058 1_3:-61013278 None:intergenic
GGAGTGCAAGTCAGTGGAAG+TGG 0.498492 1_3:-61007678 None:intergenic
TGTGTTTAACCAGCTTGTGC+AGG 0.501342 1_3:+61006616 Msa0130600:CDS
CTCTACCATTTCTCCCTGCT+CGG 0.502297 1_3:-61013028 None:intergenic
CTGTATATGCAGGTTATGGT+TGG 0.505392 1_3:+61012262 Msa0130600:intron
GCTCCAACTCCGAGCCAAGC+TGG 0.505446 1_3:-61013384 None:intergenic
ACGAGAATCGCCATGAGAGT+TGG 0.506900 1_3:+61008622 Msa0130600:CDS
TAGGTTTGTTCAGTAAAGGT+TGG 0.507210 1_3:+61013906 Msa0130600:three_prime_UTR
TGACCTCTATATTCGGGAAG+TGG 0.507739 1_3:+61008071 Msa0130600:CDS
GACATTCTTCACCGTGAAGT+TGG 0.507840 1_3:+61005707 Msa0130600:CDS
CCATGTCTTCAGCAATCATG+TGG 0.508496 1_3:+61010178 Msa0130600:intron
CTACCTTGTGATCAGGTCCC+GGG 0.508617 1_3:-61009023 None:intergenic
TTGTTCGGGCAATCAAATAT+GGG 0.508882 1_3:+61014084 Msa0130600:three_prime_UTR
AGCACCTCTTAGGTCCTTCA+CGG 0.509480 1_3:-61012085 None:intergenic
CAATACTGCCTCCACGGCCA+TGG 0.510703 1_3:-61012399 None:intergenic
GCTCTAGCTGGAAGCTGTGT+TGG 0.512706 1_3:-61008675 None:intergenic
AAATGGTAGAGGCTAAGTTT+GGG 0.514174 1_3:+61013040 Msa0130600:CDS
GAAGAAGTTCTAACCGTCTA+CGG 0.515159 1_3:-61009998 None:intergenic
GATGATGATTGTAGGTTGCT+TGG 0.516176 1_3:+61005671 Msa0130600:CDS
AATTGAAGATGAAGAACCAT+TGG 0.516879 1_3:-61009200 None:intergenic
CGATCTTCAGGGCTAAGATC+AGG 0.517591 1_3:-61007136 None:intergenic
TCATCTCGGGGTGGGAGAGG+TGG 0.518044 1_3:-61013129 None:intergenic
TATCCACTTCCCGAATATAG+AGG 0.519946 1_3:-61008074 None:intergenic
TCCACCTGCAACAGGTTCAT+GGG 0.520556 1_3:-61013711 None:intergenic
GCCGAGCTCTGCTTCAGGCG+TGG 0.520653 1_3:-61013253 None:intergenic
CCTTATCCTTTACATTTCCC+AGG 0.522515 1_3:-61009363 None:intergenic
TCTACCTTGTGATCAGGTCC+CGG 0.526127 1_3:-61009024 None:intergenic
ATTATGTGTACCAGCAAAAG+AGG 0.526645 1_3:-61008706 None:intergenic
AGTTGTCCTGGGAAATGTAA+AGG 0.527528 1_3:+61009357 Msa0130600:CDS
TCTGATTCTGGTAAAGATGC+TGG 0.527744 1_3:+61012289 Msa0130600:CDS
AGTCCAACTACACTCAGAAC+TGG 0.528241 1_3:+61009136 Msa0130600:CDS
ATCTTAGTGCAGCAGTGTTG+TGG 0.528666 1_3:-61005444 None:intergenic
TTACAACACAGTCTGCAAAC+AGG 0.529417 1_3:+61006661 Msa0130600:CDS
TCCGAATCGCTGCTGAACTA+GGG 0.530013 1_3:+61011399 Msa0130600:CDS
AAACCTTCGTGCTATTCCCT+GGG 0.530352 1_3:+61013329 Msa0130600:CDS
CTTGCCTCTCCTCTGACACA+AGG 0.531845 1_3:-61013554 None:intergenic
GATTTGAGCTATCTATGAAT+CGG 0.532118 1_3:+61008103 Msa0130600:CDS
TGGAAGTAAGAAAGGAACTC+TGG 0.534013 1_3:-61013225 None:intergenic
ATAAAGTTTGGAACTTGGAT+GGG 0.536672 1_3:+61007702 Msa0130600:CDS
TATGGCAGACAGATGAGCTT+AGG 0.537663 1_3:+61007327 Msa0130600:CDS
GACTGAATAGCCAGATATGT+AGG 0.537677 1_3:-61012436 None:intergenic
CTAGCTTCATCAACTGGAGT+GGG 0.537880 1_3:-61007359 None:intergenic
GTTACACTGTTCCATGGCCG+TGG 0.538939 1_3:+61012388 Msa0130600:CDS
TAGAGTTGCAACCTTTGGAA+TGG 0.539927 1_3:+61010243 Msa0130600:CDS
TAGCTGCATTACAGGAATCT+GGG 0.541027 1_3:+61010348 Msa0130600:intron
GTAAATTTCCTCTGAGAAAG+CGG 0.541472 1_3:-61009253 None:intergenic
CAAAGGTGGTACCAACTTCA+CGG 0.542181 1_3:-61005718 None:intergenic
TGTTCGTCGATTAATTTGTG+TGG 0.545050 1_3:-61006952 None:intergenic
GCAAGAAGGAAGAACACAAA+GGG 0.545085 1_3:+61013300 Msa0130600:CDS
CGTGTTCACAGGGTTCGTAA+AGG 0.546242 1_3:+61006557 Msa0130600:intron
GGGTGGGAGAGGTGGACGAA+GGG 0.547195 1_3:-61013121 None:intergenic
CTTCATTAAAACCATTCCAA+AGG 0.547879 1_3:-61010254 None:intergenic
AAGTTTGTGCTCGTGATTAG+TGG 0.548271 1_3:+61013618 Msa0130600:CDS
AAGGGCTTCATCATAGTACT+TGG 0.548292 1_3:-61013535 None:intergenic
AAAAGTTAGTTACTTGAGCA+AGG 0.549708 1_3:-61005766 None:intergenic
CCATCACAGACCCAGGTGGT+TGG 0.550298 1_3:-61012459 None:intergenic
TATGGGTACTTATAGTGAAT+GGG 0.550472 1_3:+61010412 Msa0130600:CDS
GGAGTTGGAGCAGGTTTGAA+AGG 0.551309 1_3:+61013396 Msa0130600:CDS
GTGAAGGACCTAAGAGGTGC+TGG 0.552645 1_3:+61012087 Msa0130600:CDS
TGGAGATTCTGAAGAGGTTG+AGG 0.553888 1_3:+61013730 Msa0130600:CDS
GCATGTAATATGAGGCAAGC+AGG 0.554017 1_3:+61006032 Msa0130600:CDS
AGATCGAGAAATGCTAATTG+AGG 0.554326 1_3:+61007153 Msa0130600:CDS
TGATGAAGCCCTTGTGTCAG+AGG 0.554453 1_3:+61013545 Msa0130600:CDS
GTTCACAGGGTTCGTAAAGG+AGG 0.555920 1_3:+61006560 Msa0130600:intron
TGGCTTCGTGGAAGTAAGAA+AGG 0.556061 1_3:-61013233 None:intergenic
ATGGGATTGCTGCTGGGATG+AGG 0.557054 1_3:+61013802 Msa0130600:CDS
GGAGCAATTCCAGCAAGTTG+AGG 0.557720 1_3:-61009328 None:intergenic
TCAGCAATCATGTGGGTCTG+GGG 0.558099 1_3:+61010186 Msa0130600:intron
GGGGTGGGAGAGGTGGACGA+AGG 0.558545 1_3:-61013122 None:intergenic
CCAGTTGATGAAGCTAGAGC+TGG 0.561704 1_3:+61007365 Msa0130600:CDS
TGCTTGTGAGAAAGGTCATA+GGG 0.562712 1_3:+61013419 Msa0130600:CDS
AGTTTGTGCTCGTGATTAGT+GGG 0.563717 1_3:+61013619 Msa0130600:CDS
GCTCCTTATAGAGTTGTCCT+GGG 0.565302 1_3:+61009346 Msa0130600:CDS
GCCACGCCTGAAGCAGAGCT+CGG 0.565662 1_3:+61013252 Msa0130600:CDS
AATGAAGCTTGATTTACGCC+AGG 0.565768 1_3:+61010270 Msa0130600:CDS
TGGACTGATTCCAACTCTCA+TGG 0.566823 1_3:-61008632 None:intergenic
ATGAACATGAGAAATTGTTC+GGG 0.567273 1_3:+61014070 Msa0130600:three_prime_UTR
GTGTTTAACCAGCTTGTGCA+GGG 0.568664 1_3:+61006617 Msa0130600:CDS
TACAATAGACCTTATTGAGA+TGG 0.569016 1_3:+61013485 Msa0130600:CDS
ATTAAAGTTACACTGTTCCA+TGG 0.569596 1_3:+61012382 Msa0130600:CDS
TTCACTTCTATCTAGATGGA+TGG 0.571403 1_3:+61008044 Msa0130600:CDS
CTGACACGTCGTAAATAATG+AGG 0.573177 1_3:-61007545 None:intergenic
GATTCATAACAGAGGAGCAG+AGG 0.575099 1_3:-61010086 None:intergenic
GCTGCTGGGATGAGGAATAC+CGG 0.577928 1_3:+61013810 Msa0130600:CDS
TAGGTAGTCGCCCTGCAAGA+AGG 0.578256 1_3:+61013286 Msa0130600:CDS
GTTCGTCGATTAATTTGTGT+GGG 0.578693 1_3:-61006951 None:intergenic
GGGTCTGGGGTGCTAGCTGA+TGG 0.578897 1_3:+61010199 Msa0130600:CDS
CAAGAGAGCTGAAAGGAAAG+AGG 0.580073 1_3:+61010462 Msa0130600:CDS
CCCTCTATTTGAAACCGTGA+AGG 0.582239 1_3:+61012071 Msa0130600:CDS
AAACTCCACCCTGCACAAGC+TGG 0.582588 1_3:-61006625 None:intergenic
CCGTAAATGGGATTGCTGCT+GGG 0.582637 1_3:+61013796 Msa0130600:CDS
AAGTGACTGACTTCTATTCG+TGG 0.582977 1_3:-61008652 None:intergenic
TTCGAGTTTGTCAACAAAGG+TGG 0.583706 1_3:-61005732 None:intergenic
TGTCAGCAATGCTTTAAAGA+AGG 0.584116 1_3:+61007562 Msa0130600:CDS
ATATAGTGGAGCAGTCACTC+TGG 0.585383 1_3:+61007513 Msa0130600:CDS
GTTCCCAAGCAGCAGTGAAG+CGG 0.586086 1_3:-61012312 None:intergenic
TCCCATGAACCTGTTGCAGG+TGG 0.586186 1_3:+61013710 Msa0130600:CDS
CCTTCACGGTTTCAAATAGA+GGG 0.586828 1_3:-61012071 None:intergenic
AGCAGAATAATAGGAGCTTG+AGG 0.589386 1_3:+61013655 Msa0130600:CDS
GTTACTGATACTTTAAGACT+GGG 0.590423 1_3:-61009163 None:intergenic
ACAAGTTCAGAAAATTCCAA+TGG 0.590563 1_3:+61009184 Msa0130600:CDS
TTGCCTCTCCTCTGACACAA+GGG 0.590774 1_3:-61013553 None:intergenic
GCATCCTAGACTAGACATCC+CGG 0.591241 1_3:+61009005 Msa0130600:CDS
AAATCCAAACGTTACCGCAA+AGG 0.593471 1_3:+61007740 Msa0130600:CDS
CTATTCAGTCCCAACCACCT+GGG 0.594998 1_3:+61012449 Msa0130600:CDS
TTCACAGGGTTCGTAAAGGA+GGG 0.596243 1_3:+61006561 Msa0130600:intron
GCAAGCAGGTATAGTGAACA+TGG 0.596263 1_3:+61006046 Msa0130600:CDS
AGCTTGAGAGAAGCCGTAGA+CGG 0.598721 1_3:+61009985 Msa0130600:intron
ACTGAATAGCCAGATATGTA+GGG 0.599957 1_3:-61012435 None:intergenic
CCAACCACCTGGGTCTGTGA+TGG 0.600411 1_3:+61012459 Msa0130600:CDS
GGTTCTTAATGACGTGCTCG+CGG 0.600425 1_3:-61012146 None:intergenic
CGTGGAGGCAGTATTGGTCG+AGG 0.601373 1_3:+61012406 Msa0130600:CDS
CTGTGTTGTAAAGATCATCC+GGG 0.602908 1_3:-61006649 None:intergenic
GAAACCGTGAAGGACCTAAG+AGG 0.603322 1_3:+61012081 Msa0130600:CDS
GGTCCCGGGATGTCTAGTCT+AGG 0.603572 1_3:-61009009 None:intergenic
TCTAGCTTCATCAACTGGAG+TGG 0.604729 1_3:-61007360 None:intergenic
AAATTTACAGAATCCCAGAC+AGG 0.606640 1_3:+61009268 Msa0130600:CDS
AAGTTTGGAACTTGGATGGG+AGG 0.608594 1_3:+61007705 Msa0130600:CDS
TCTTTCGAGTTTGTCAACAA+AGG 0.610094 1_3:-61005735 None:intergenic
TGGATGGGAGGTGATAGAGA+TGG 0.610576 1_3:+61007717 Msa0130600:CDS
GAACCACAATGGACATCAAG+AGG 0.612446 1_3:+61012164 Msa0130600:CDS
CATGTCTTCAGCAATCATGT+GGG 0.620570 1_3:+61010179 Msa0130600:intron
GTTCCTACTTACGTTCCACC+AGG 0.621553 1_3:-61011643 None:intergenic
GCTGTTTCATAATAATCCAA+AGG 0.621583 1_3:-61010047 None:intergenic
GCACCTCTTGATGTCCATTG+TGG 0.622223 1_3:-61012167 None:intergenic
TCAGAGGAGAGGCAAGAACT+CGG 0.623021 1_3:+61013561 Msa0130600:CDS
TCCATACTAACAGGAACTAG+TGG 0.624015 1_3:-61010485 None:intergenic
CCAGCAAGTTGAGGGAGCTG+TGG 0.625144 1_3:-61009319 None:intergenic
CTCGACCAATACTGCCTCCA+CGG 0.625263 1_3:-61012405 None:intergenic
GGAACTTTACAAAGCTCAGG+AGG 0.626662 1_3:+61012330 Msa0130600:CDS
TTTATGGGAGTGCAAGTCAG+TGG 0.628326 1_3:-61007684 None:intergenic
CGAGCAGGGAGAAATGGTAG+AGG 0.629375 1_3:+61013029 Msa0130600:CDS
ACACTTCGGTCTACCGAGCA+GGG 0.629832 1_3:+61013015 Msa0130600:CDS
TTGAGTCCAAGCAAATACCC+AGG 0.630631 1_3:-61013346 None:intergenic
AAGCCCTTGTGTCAGAGGAG+AGG 0.630970 1_3:+61013550 Msa0130600:CDS
GGCAATTATTCATACACTCG+AGG 0.633269 1_3:-61011456 None:intergenic
CATCCCGGGACCTGATCACA+AGG 0.634971 1_3:+61009020 Msa0130600:CDS
TTTCTTAATTAATAGGACGG+TGG 0.636114 1_3:+61009103 Msa0130600:intron
GTGTATTGCAGGGAACACTT+CGG 0.637688 1_3:+61013001 Msa0130600:intron
CTAGTCAACCGCTTTCTCAG+AGG 0.639378 1_3:+61009245 Msa0130600:CDS
ACTAGTTCCTGTTAGTATGG+AGG 0.640325 1_3:+61010487 Msa0130600:CDS
TTCTTAACAAGAGAGCTGAA+AGG 0.641838 1_3:+61010455 Msa0130600:CDS
TTGGGAAGAGCATGTCCTGG+TGG 0.644240 1_3:+61011628 Msa0130600:CDS
CATCCTAGACTAGACATCCC+GGG 0.646195 1_3:+61009006 Msa0130600:CDS
ACGGTTAGAACTTCTTCTTG+AGG 0.647683 1_3:+61010004 Msa0130600:CDS
TCATAGATAGCTCAAATCTG+AGG 0.648141 1_3:-61008098 None:intergenic
CGAGGCCATAGATATCACAT+AGG 0.648602 1_3:-61011438 None:intergenic
GTATAGCTGAAACTCACCAT+AGG 0.648779 1_3:+61006171 Msa0130600:CDS
TAACCTACCATCACAGACCC+AGG 0.649354 1_3:-61012466 None:intergenic
TTATGTGTACCAGCAAAAGA+GGG 0.650285 1_3:-61008705 None:intergenic
GGTTGACTAGAGTTGTAAGA+GGG 0.652302 1_3:-61009232 None:intergenic
TCTGTAAAAGCTCTACTGCA+AGG 0.652755 1_3:-61011576 None:intergenic
GAATTGGGAAGAGCATGTCC+TGG 0.653296 1_3:+61011625 Msa0130600:CDS
TGCAAGAAGGAAGAACACAA+AGG 0.657542 1_3:+61013299 Msa0130600:CDS
TTTAACCAGCTTGTGCAGGG+TGG 0.657609 1_3:+61006620 Msa0130600:CDS
ACACTGTTCCATGGCCGTGG+AGG 0.658097 1_3:+61012391 Msa0130600:CDS
CACGTCATTAAGAACCACAA+TGG 0.667175 1_3:+61012153 Msa0130600:CDS
TGAGTCCAAGCAAATACCCA+GGG 0.675293 1_3:-61013345 None:intergenic
AGAATAATAGGAGCTTGAGG+AGG 0.677598 1_3:+61013658 Msa0130600:CDS
GAGCTCGGCTTCCTGAACAT+AGG 0.682691 1_3:+61013267 Msa0130600:CDS
AGTTGTCTAACAGCTATCTG+TGG 0.683037 1_3:-61013066 None:intergenic
TGCAGGTGGAGATTCTGAAG+AGG 0.686065 1_3:+61013724 Msa0130600:CDS
GTACCAGAGATTCATAACAG+AGG 0.693986 1_3:-61010094 None:intergenic
AGTGCAGCAGTGTTGTGGTG+TGG 0.699289 1_3:-61005439 None:intergenic
GGAGGCAGTATTGGTCGAGG+CGG 0.705601 1_3:+61012409 Msa0130600:CDS
TCAAACAAAGAAGCGACACG+TGG 0.707386 1_3:-61005495 None:intergenic
TGTGTTGTAAAGATCATCCG+GGG 0.722012 1_3:-61006648 None:intergenic
CCTACCATCACAGACCCAGG+TGG 0.773370 1_3:-61012463 None:intergenic
ATACCCAGGGAATAGCACGA+AGG 0.786673 1_3:-61013332 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAGTAATAATAATT+TGG + chr1_3:61007440-61007459 Msa0130600:intron 10.0%
!! ACAAAATAGAATTTATATTA+AGG - chr1_3:61008917-61008936 None:intergenic 10.0%
!!! TGTATATTTTCTTAATTAAT+AGG + chr1_3:61009096-61009115 Msa0130600:intron 10.0%
!!! ATTCATTTAATTTTATGTTA+TGG + chr1_3:61012204-61012223 Msa0130600:intron 10.0%
!!! TGACAATCATTTTTTTTTTT+TGG + chr1_3:61005515-61005534 Msa0130600:five_prime_UTR 15.0%
!! AATAAACAAGAAAAACATTA+AGG - chr1_3:61006820-61006839 None:intergenic 15.0%
!!! TAATGTTTTTCTTGTTTATT+TGG + chr1_3:61006820-61006839 Msa0130600:intron 15.0%
!! TAAAAAAATGTAAAACAAAC+TGG - chr1_3:61006889-61006908 None:intergenic 15.0%
!!! TATTTTCTTAATTAATAGGA+CGG + chr1_3:61009100-61009119 Msa0130600:intron 15.0%
!! TCATATTTATCATTAAAAGA+TGG - chr1_3:61010631-61010650 None:intergenic 15.0%
!! TTCTAAGCAAAAATATAAAA+AGG - chr1_3:61010865-61010884 None:intergenic 15.0%
!! TTTATATCAACTTCTAATTA+TGG + chr1_3:61010895-61010914 Msa0130600:intron 15.0%
!! TACATGAAAAGAACAAAAAA+TGG - chr1_3:61006688-61006707 None:intergenic 20.0%
!!! TTTTTCTTGTTTATTTGGAA+TGG + chr1_3:61006825-61006844 Msa0130600:intron 20.0%
!!! TTTTTTATTTTTGTTGCTTC+AGG + chr1_3:61006902-61006921 Msa0130600:intron 20.0%
!! TTATCTGTTTAACTATTAAG+TGG + chr1_3:61007242-61007261 Msa0130600:intron 20.0%
!!! GTTTTATTTTTATTTCTCAC+AGG + chr1_3:61007485-61007504 Msa0130600:intron 20.0%
!! TCAAAGTTGAACAAAATATT+TGG - chr1_3:61007978-61007997 None:intergenic 20.0%
!!! AAAGTATTAGCACAAAAAAT+TGG + chr1_3:61008396-61008415 Msa0130600:intron 20.0%
!!! TATCTTTTTCATGTAGAAAA+TGG + chr1_3:61008973-61008992 Msa0130600:intron 20.0%
!! AAATTATACTTGCATGTTAT+TGG + chr1_3:61009477-61009496 Msa0130600:intron 20.0%
!! TTCAACTTAGCTATAAAAAA+AGG + chr1_3:61009697-61009716 Msa0130600:intron 20.0%
!! TCAACTTAGCTATAAAAAAA+GGG + chr1_3:61009698-61009717 Msa0130600:intron 20.0%
!! AATGCATGCATTTATTATAA+TGG - chr1_3:61009956-61009975 None:intergenic 20.0%
!! TGATAATAAATACACCAAAA+TGG - chr1_3:61010747-61010766 None:intergenic 20.0%
!! AAAAGAAAGTCTCATTAATT+TGG - chr1_3:61010775-61010794 None:intergenic 20.0%
!!! AATTAATGAGACTTTCTTTT+TGG + chr1_3:61010775-61010794 Msa0130600:intron 20.0%
!!! TAAACAATAAACATCCATTT+TGG - chr1_3:61010811-61010830 None:intergenic 20.0%
!! AGCAAAAATATAAAAAGGAT+TGG - chr1_3:61010860-61010879 None:intergenic 20.0%
!!! TTTTAGCTTTTCAATATAAC+TGG - chr1_3:61010943-61010962 None:intergenic 20.0%
!!! ATTGGTATCTTGATTTTATT+AGG + chr1_3:61011343-61011362 Msa0130600:intron 20.0%
!! AAATTGTAGTCATAATTTCA+AGG - chr1_3:61011483-61011502 None:intergenic 20.0%
!!! AGTTGTTTTATAAGTCATAT+TGG + chr1_3:61011881-61011900 Msa0130600:intron 20.0%
!!! ATTTTCACAATACAGATATA+GGG - chr1_3:61012012-61012031 None:intergenic 20.0%
!!! AATTTTCACAATACAGATAT+AGG - chr1_3:61012013-61012032 None:intergenic 20.0%
!! TATTATAAATCTGTATATGC+AGG + chr1_3:61012252-61012271 Msa0130600:intron 20.0%
!!! TAATTTTTTTGGTACATCAA+TGG + chr1_3:61012575-61012594 Msa0130600:intron 20.0%
!!! CAATAATCTTAAGAACTTTT+AGG + chr1_3:61012794-61012813 Msa0130600:intron 20.0%
!! TAAAATCAAATTCATAGTTG+AGG - chr1_3:61012878-61012897 None:intergenic 20.0%
!!! TGAATAGTTTGTTTTATGTT+AGG + chr1_3:61013887-61013906 Msa0130600:three_prime_UTR 20.0%
!!! GATGTTCCTATTTTTGTTTT+TGG + chr1_3:61006003-61006022 Msa0130600:intron 25.0%
! AGTCATTATCTTACTATGAT+GGG + chr1_3:61006149-61006168 Msa0130600:CDS 25.0%
!! TACTTTCCAAATTTCAGTTT+TGG + chr1_3:61006244-61006263 Msa0130600:intron 25.0%
! CATGTATATCTACATATGTA+TGG + chr1_3:61006702-61006721 Msa0130600:intron 25.0%
! ACAATTTCCAAAAAAATGCA+AGG - chr1_3:61006769-61006788 None:intergenic 25.0%
!! TGTGAGTATTTTACTTTGTT+TGG + chr1_3:61007001-61007020 Msa0130600:intron 25.0%
!! CATTCCATTGAATTTTTGAA+TGG - chr1_3:61007027-61007046 None:intergenic 25.0%
! CATGATGACAAATGAAAATA+CGG - chr1_3:61007279-61007298 None:intergenic 25.0%
! TTTCATTTGTCATCATGATT+TGG + chr1_3:61007282-61007301 Msa0130600:intron 25.0%
!! TATCAAGTATTGTATATGTC+AGG + chr1_3:61007401-61007420 Msa0130600:intron 25.0%
! TTTATGAATACTAGTAACTG+AGG + chr1_3:61007812-61007831 Msa0130600:intron 25.0%
! TTATGAATACTAGTAACTGA+GGG + chr1_3:61007813-61007832 Msa0130600:intron 25.0%
! TTAAACATTGACATAACAGT+AGG - chr1_3:61007850-61007869 None:intergenic 25.0%
!!! TTTCTTTCGTAGTTTTGTTA+TGG + chr1_3:61007878-61007897 Msa0130600:intron 25.0%
!!! TTCTTTCGTAGTTTTGTTAT+GGG + chr1_3:61007879-61007898 Msa0130600:intron 25.0%
! TGATGATATTATTCAAGTAC+AGG - chr1_3:61007949-61007968 None:intergenic 25.0%
!! TGTCTGTTGAATTTTACTTT+TGG + chr1_3:61008172-61008191 Msa0130600:intron 25.0%
! CATAATTAGAAAATACTCTG+AGG - chr1_3:61008538-61008557 None:intergenic 25.0%
! ACATTGAAATCAAAGAGATA+TGG - chr1_3:61008773-61008792 None:intergenic 25.0%
! TTGCACGAGAAATAATTATT+AGG + chr1_3:61008879-61008898 Msa0130600:intron 25.0%
! TATACATTATATAGCATGCT+AGG - chr1_3:61009082-61009101 None:intergenic 25.0%
!!! ACTTTTTAAGTACTAATCAC+CGG - chr1_3:61009407-61009426 None:intergenic 25.0%
!! CAAATCATTTGAAGCATTTA+CGG - chr1_3:61009559-61009578 None:intergenic 25.0%
!! TTATAGCTAAGTTGAAAAGA+TGG - chr1_3:61009693-61009712 None:intergenic 25.0%
! AGTTACAACATATTTGGATA+TGG + chr1_3:61010394-61010413 Msa0130600:CDS 25.0%
! GTTACAACATATTTGGATAT+GGG + chr1_3:61010395-61010414 Msa0130600:CDS 25.0%
!! TTGGAATTAGTTTACCAAAA+TGG + chr1_3:61010794-61010813 Msa0130600:intron 25.0%
! CCATATTATTAGTGTGATTA+TGG - chr1_3:61011526-61011545 None:intergenic 25.0%
! CCATAATCACACTAATAATA+TGG + chr1_3:61011523-61011542 Msa0130600:intron 25.0%
! ATCAGACTAATTGAAAGAAA+GGG - chr1_3:61011668-61011687 None:intergenic 25.0%
!! TTCAATTAGTCTGATCAAAA+TGG + chr1_3:61011673-61011692 Msa0130600:intron 25.0%
! AATAAGCTGTTTATCAAAAC+AGG - chr1_3:61011749-61011768 None:intergenic 25.0%
! ACCAACACTTATTATGATAA+GGG + chr1_3:61011782-61011801 Msa0130600:intron 25.0%
! TCTTATGACATGTTTACATT+AGG + chr1_3:61012037-61012056 Msa0130600:intron 25.0%
! AGTCTATTGATAAAAGTTTC+CGG - chr1_3:61012122-61012141 None:intergenic 25.0%
! GTAAATAAGTGACAAACATT+TGG + chr1_3:61012676-61012695 Msa0130600:intron 25.0%
!!! AAACTGTTTTGGTTGAATTT+TGG + chr1_3:61012763-61012782 Msa0130600:intron 25.0%
!!! GAGGATTTAATTTGATTATC+AGG - chr1_3:61012859-61012878 None:intergenic 25.0%
! TAAAAGCAATGTACAAAGAA+TGG + chr1_3:61013448-61013467 Msa0130600:CDS 25.0%
!! TCTATTGTACTTTGAAAGAA+AGG - chr1_3:61013474-61013493 None:intergenic 25.0%
AAAAGTTAGTTACTTGAGCA+AGG - chr1_3:61005769-61005788 None:intergenic 30.0%
CCATGAAAAGTAAAAAAGTG+GGG - chr1_3:61005827-61005846 None:intergenic 30.0%
CCCATGAAAAGTAAAAAAGT+GGG - chr1_3:61005828-61005847 None:intergenic 30.0%
!!! CCCACTTTTTTACTTTTCAT+GGG + chr1_3:61005825-61005844 Msa0130600:intron 30.0%
!!! CCACTTTTTTACTTTTCATG+GGG + chr1_3:61005826-61005845 Msa0130600:intron 30.0%
! TTTTGCTCTGTTTCCTTTTA+TGG + chr1_3:61005885-61005904 Msa0130600:intron 30.0%
! TTTGCTCTGTTTCCTTTTAT+GGG + chr1_3:61005886-61005905 Msa0130600:intron 30.0%
AAAAAGCAAAACCCCATAAA+AGG - chr1_3:61005901-61005920 None:intergenic 30.0%
! TAGATTTTCACATTCAGCAA+GGG - chr1_3:61005926-61005945 None:intergenic 30.0%
! ATAGATTTTCACATTCAGCA+AGG - chr1_3:61005927-61005946 None:intergenic 30.0%
TATTACTCACTTCTGATCAA+AGG - chr1_3:61005977-61005996 None:intergenic 30.0%
ACTCTGCCAAAAACAAAAAT+AGG - chr1_3:61006012-61006031 None:intergenic 30.0%
CAGTCATTATCTTACTATGA+TGG + chr1_3:61006148-61006167 Msa0130600:CDS 30.0%
CACCATAGGTAAATAATCTA+CGG + chr1_3:61006185-61006204 Msa0130600:intron 30.0%
CACTAACTCTGATTATTTGT+TGG + chr1_3:61006211-61006230 Msa0130600:intron 30.0%
!!! TCCAAATTTCAGTTTTGGAT+TGG + chr1_3:61006249-61006268 Msa0130600:intron 30.0%
CTTTCATAAGTTCTCATAAC+CGG - chr1_3:61006314-61006333 None:intergenic 30.0%
!!! TCACCAGCTGTTTTTATTTT+CGG + chr1_3:61006349-61006368 Msa0130600:intron 30.0%
!!! GTTTTTTTCATGAGCTATCT+TGG - chr1_3:61006393-61006412 None:intergenic 30.0%
AATTAGCTGCTTATAGCATA+AGG - chr1_3:61006480-61006499 None:intergenic 30.0%
ATTAAGCTGTTTATCCAAAC+AGG + chr1_3:61006497-61006516 Msa0130600:intron 30.0%
TTAAGCTGTTTATCCAAACA+GGG + chr1_3:61006498-61006517 Msa0130600:intron 30.0%
!! GCTTTTTCCTTGCATTTTTT+TGG + chr1_3:61006759-61006778 Msa0130600:intron 30.0%
!!! TTTATTTTTGTTGCTTCAGG+AGG + chr1_3:61006905-61006924 Msa0130600:intron 30.0%
TTGGCCATTCAAAAATTCAA+TGG + chr1_3:61007020-61007039 Msa0130600:intron 30.0%
AAAAATCACTGTATTGTGAG+AGG + chr1_3:61007211-61007230 Msa0130600:intron 30.0%
!! ATTTGTCATCATGATTTGGT+AGG + chr1_3:61007286-61007305 Msa0130600:intron 30.0%
TGAGAGAGATAACTTCAATA+TGG + chr1_3:61007309-61007328 Msa0130600:CDS 30.0%
ATCCAAGTTCCAAACTTTAT+GGG - chr1_3:61007702-61007721 None:intergenic 30.0%
! ATAAAGTTTGGAACTTGGAT+GGG + chr1_3:61007702-61007721 Msa0130600:CDS 30.0%
!!! TCTTTCGTAGTTTTGTTATG+GGG + chr1_3:61007880-61007899 Msa0130600:intron 30.0%
GATTTGAGCTATCTATGAAT+CGG + chr1_3:61008103-61008122 Msa0130600:CDS 30.0%
TCGAAGTAACAAGATTGAAT+TGG - chr1_3:61008329-61008348 None:intergenic 30.0%
! TACTTTAGAAGAAAGATGTG+AGG - chr1_3:61008382-61008401 None:intergenic 30.0%
CACATCTTTCATCTAAAGAA+TGG + chr1_3:61008425-61008444 Msa0130600:intron 30.0%
TTTCATCTAAAGAATGGAGA+GGG + chr1_3:61008431-61008450 Msa0130600:intron 30.0%
CAGAAAGTCAAAAATATCTG+AGG - chr1_3:61008811-61008830 None:intergenic 30.0%
TTTCTTAATTAATAGGACGG+TGG + chr1_3:61009103-61009122 Msa0130600:intron 30.0%
!! GTTACTGATACTTTAAGACT+GGG - chr1_3:61009166-61009185 None:intergenic 30.0%
!! TGTTACTGATACTTTAAGAC+TGG - chr1_3:61009167-61009186 None:intergenic 30.0%
ACAAGTTCAGAAAATTCCAA+TGG + chr1_3:61009184-61009203 Msa0130600:CDS 30.0%
AATTGAAGATGAAGAACCAT+TGG - chr1_3:61009203-61009222 None:intergenic 30.0%
!!! TATTGGTTTCTTGGCATTTT+CGG + chr1_3:61009494-61009513 Msa0130600:intron 30.0%
! CATAATTTTCTGATTGAGAC+TGG + chr1_3:61009619-61009638 Msa0130600:intron 30.0%
GATGGATAGATGTAGATTAT+TGG - chr1_3:61009675-61009694 None:intergenic 30.0%
TACAATACACCAATAATGGT+GGG - chr1_3:61009773-61009792 None:intergenic 30.0%
TGCATTATCAGAATATCTAC+TGG + chr1_3:61009871-61009890 Msa0130600:intron 30.0%
! GCTGTTTCATAATAATCCAA+AGG - chr1_3:61010050-61010069 None:intergenic 30.0%
CTTCATTAAAACCATTCCAA+AGG - chr1_3:61010257-61010276 None:intergenic 30.0%
CATGAAATATAAATCGTACC+TGG - chr1_3:61010291-61010310 None:intergenic 30.0%
TGATGCAGTTACAACATATT+TGG + chr1_3:61010388-61010407 Msa0130600:CDS 30.0%
ATATGGGTACTTATAGTGAA+TGG + chr1_3:61010411-61010430 Msa0130600:CDS 30.0%
TATGGGTACTTATAGTGAAT+GGG + chr1_3:61010412-61010431 Msa0130600:CDS 30.0%
ATGGGATGAAGAAAAGAAAT+TGG + chr1_3:61010430-61010449 Msa0130600:CDS 30.0%
TTAGCTGTATATCTTGTGTT+AGG + chr1_3:61010559-61010578 Msa0130600:intron 30.0%
!! CATACGAGTCTATTTTGAAA+AGG + chr1_3:61010586-61010605 Msa0130600:intron 30.0%
!! TGTCCAATTTTGATGTCATA+TGG + chr1_3:61010657-61010676 Msa0130600:intron 30.0%
TCTCCATATGACATCAAAAT+TGG - chr1_3:61010663-61010682 None:intergenic 30.0%
! CAAACATTGATAGACCATTT+TGG + chr1_3:61010730-61010749 Msa0130600:intron 30.0%
! GAAAAGCTAAAACTTGTTTC+TGG + chr1_3:61010951-61010970 Msa0130600:intron 30.0%
CAGAATTTATTCATTCACTC+AGG - chr1_3:61011011-61011030 None:intergenic 30.0%
! GAAAAGCTAAAACTTGTTTC+TGG + chr1_3:61010951-61010970 Msa0130600:intron 30.0%
CAGAATTTATTCATTCACTC+AGG - chr1_3:61011011-61011030 None:intergenic 30.0%
TATTGTACTTGTTTCACTCT+CGG + chr1_3:61011258-61011277 Msa0130600:intron 30.0%
TTGTAGTCATAATTTCAAGG+TGG - chr1_3:61011480-61011499 None:intergenic 30.0%
GATCAGACTAATTGAAAGAA+AGG - chr1_3:61011669-61011688 None:intergenic 30.0%
CACCAACACTTATTATGATA+AGG + chr1_3:61011781-61011800 Msa0130600:intron 30.0%
!!! TTTGGATTGGCTTATTTTGT+GGG - chr1_3:61011985-61012004 None:intergenic 30.0%
! GGAAACTTTTATCAATAGAC+TGG + chr1_3:61012121-61012140 Msa0130600:CDS 30.0%
AAATCTGTATATGCAGGTTA+TGG + chr1_3:61012258-61012277 Msa0130600:intron 30.0%
ATTAAAGTTACACTGTTCCA+TGG + chr1_3:61012382-61012401 Msa0130600:CDS 30.0%
ATAACCTGCTTGAAACTTAA+TGG + chr1_3:61012533-61012552 Msa0130600:intron 30.0%
!! TTTTTGGTACATCAATGGTA+TGG + chr1_3:61012580-61012599 Msa0130600:intron 30.0%
TGTTAATGGTTTCAACTTCT+AGG + chr1_3:61012636-61012655 Msa0130600:intron 30.0%
! GTGACAAACATTTGGAATAT+TGG + chr1_3:61012684-61012703 Msa0130600:intron 30.0%
! GTTTAACCATGAAACTGTTT+TGG + chr1_3:61012752-61012771 Msa0130600:intron 30.0%
ATTCAACCAAAACAGTTTCA+TGG - chr1_3:61012761-61012780 None:intergenic 30.0%
! TAAAACTTGTTCCTTAAGAC+TGG - chr1_3:61012923-61012942 None:intergenic 30.0%
GCAAAAATTTATGTTTCCCA+TGG + chr1_3:61012979-61012998 Msa0130600:intron 30.0%
TACAATAGACCTTATTGAGA+TGG + chr1_3:61013485-61013504 Msa0130600:CDS 30.0%
AGAAACTTCAGCAGAATAAT+AGG + chr1_3:61013646-61013665 Msa0130600:CDS 30.0%
! ATGTTAGGTTTGTTCAGTAA+AGG + chr1_3:61013902-61013921 Msa0130600:three_prime_UTR 30.0%
AAACAAACCATTCACCATAA+TGG - chr1_3:61013938-61013957 None:intergenic 30.0%
!!! GAATGGTTTGTTTTGTACAT+AGG + chr1_3:61013945-61013964 Msa0130600:three_prime_UTR 30.0%
CATGAACATGAGAAATTGTT+CGG + chr1_3:61014069-61014088 Msa0130600:three_prime_UTR 30.0%
ATGAACATGAGAAATTGTTC+GGG + chr1_3:61014070-61014089 Msa0130600:three_prime_UTR 30.0%
!! TCTTTCGAGTTTGTCAACAA+AGG - chr1_3:61005738-61005757 None:intergenic 35.0%
!!! CCCCACTTTTTTACTTTTCA+TGG + chr1_3:61005824-61005843 Msa0130600:intron 35.0%
CCCCATGAAAAGTAAAAAAG+TGG - chr1_3:61005829-61005848 None:intergenic 35.0%
! TTGCTCTGTTTCCTTTTATG+GGG + chr1_3:61005887-61005906 Msa0130600:intron 35.0%
! AGATTTTCACATTCAGCAAG+GGG - chr1_3:61005925-61005944 None:intergenic 35.0%
AGCCGTAGATTATTTACCTA+TGG - chr1_3:61006190-61006209 None:intergenic 35.0%
GCCAATCCAAAACTGAAATT+TGG - chr1_3:61006253-61006272 None:intergenic 35.0%
AAGCCGAAAATAAAAACAGC+TGG - chr1_3:61006355-61006374 None:intergenic 35.0%
TGATTACCATTACCCTATGT+AGG - chr1_3:61006524-61006543 None:intergenic 35.0%
AACAGAAATTACGTGTTCAC+AGG + chr1_3:61006546-61006565 Msa0130600:intron 35.0%
ACAGAAATTACGTGTTCACA+GGG + chr1_3:61006547-61006566 Msa0130600:intron 35.0%
ACTGTGTTGTAAAGATCATC+CGG - chr1_3:61006653-61006672 None:intergenic 35.0%
TTAACTGATTGAAACACCAG+CGG - chr1_3:61006866-61006885 None:intergenic 35.0%
!! GTTCGTCGATTAATTTGTGT+GGG - chr1_3:61006954-61006973 None:intergenic 35.0%
!! TGTTCGTCGATTAATTTGTG+TGG - chr1_3:61006955-61006974 None:intergenic 35.0%
CACTGCAATACAAACACATT+CGG + chr1_3:61006973-61006992 Msa0130600:CDS 35.0%
! CTTCAACATGTAGCATCTTT+TGG + chr1_3:61007099-61007118 Msa0130600:intron 35.0%
TTAGCATTTCTCGATCTTCA+GGG - chr1_3:61007150-61007169 None:intergenic 35.0%
ATTAGCATTTCTCGATCTTC+AGG - chr1_3:61007151-61007170 None:intergenic 35.0%
AGATCGAGAAATGCTAATTG+AGG + chr1_3:61007153-61007172 Msa0130600:CDS 35.0%
AGAAATGCTAATTGAGGATC+TGG + chr1_3:61007159-61007178 Msa0130600:CDS 35.0%
ATTGTATATGTCAGGTCTTC+TGG + chr1_3:61007409-61007428 Msa0130600:intron 35.0%
TCTCACAGGTTTGAATATAG+TGG + chr1_3:61007499-61007518 Msa0130600:intron 35.0%
!! TGTCAGCAATGCTTTAAAGA+AGG + chr1_3:61007562-61007581 Msa0130600:CDS 35.0%
GGTCTATCATCTTGAATTCT+TGG + chr1_3:61007583-61007602 Msa0130600:intron 35.0%
CATCCAAGTTCCAAACTTTA+TGG - chr1_3:61007703-61007722 None:intergenic 35.0%
! CATAAAGTTTGGAACTTGGA+TGG + chr1_3:61007701-61007720 Msa0130600:CDS 35.0%
GTTAAAAAAGCTCACCTTTG+CGG - chr1_3:61007757-61007776 None:intergenic 35.0%
!!! CTTTCGTAGTTTTGTTATGG+GGG + chr1_3:61007881-61007900 Msa0130600:intron 35.0%
! TGTTTTTCTGTTTGTTCCTC+AGG + chr1_3:61008008-61008027 Msa0130600:intron 35.0%
CTGTTTCACTTCTATCTAGA+TGG + chr1_3:61008040-61008059 Msa0130600:CDS 35.0%
TTCACTTCTATCTAGATGGA+TGG + chr1_3:61008044-61008063 Msa0130600:CDS 35.0%
TGGCTATTGACCTCTATATT+CGG + chr1_3:61008064-61008083 Msa0130600:CDS 35.0%
TCATAGATAGCTCAAATCTG+AGG - chr1_3:61008101-61008120 None:intergenic 35.0%
CTAGCACATGAAATTCTAGA+AGG + chr1_3:61008147-61008166 Msa0130600:CDS 35.0%
GTCACATGATAGAAGACAAA+AGG - chr1_3:61008234-61008253 None:intergenic 35.0%
CTTTCATCTAAAGAATGGAG+AGG + chr1_3:61008430-61008449 Msa0130600:intron 35.0%
! GACATAAGATTGACTTCAAC+TGG + chr1_3:61008498-61008517 Msa0130600:intron 35.0%
TTATGTGTACCAGCAAAAGA+GGG - chr1_3:61008708-61008727 None:intergenic 35.0%
ATTATGTGTACCAGCAAAAG+AGG - chr1_3:61008709-61008728 None:intergenic 35.0%
ATTTCTCGTGCAATCAGAAA+GGG - chr1_3:61008872-61008891 None:intergenic 35.0%
TATTTCTCGTGCAATCAGAA+AGG - chr1_3:61008873-61008892 None:intergenic 35.0%
! ATTCTATTTTGTCATGCACG+AGG + chr1_3:61008925-61008944 Msa0130600:intron 35.0%
AATTGATCTACCTTGTGATC+AGG - chr1_3:61009033-61009052 None:intergenic 35.0%
GTAGATCAATTCAGTGTTTG+TGG + chr1_3:61009042-61009061 Msa0130600:intron 35.0%
! GTAAATTTCCTCTGAGAAAG+CGG - chr1_3:61009256-61009275 None:intergenic 35.0%
AAATTTACAGAATCCCAGAC+AGG + chr1_3:61009268-61009287 Msa0130600:CDS 35.0%
! CTCTAAAAGCTTCTGAAAAC+TGG - chr1_3:61009299-61009318 None:intergenic 35.0%
! GTATTGCTTCAGATTGATTC+CGG + chr1_3:61009385-61009404 Msa0130600:intron 35.0%
!! CTTGCATGTTATTGGTTTCT+TGG + chr1_3:61009485-61009504 Msa0130600:intron 35.0%
GTACAATACACCAATAATGG+TGG - chr1_3:61009774-61009793 None:intergenic 35.0%
TGCGTACAATACACCAATAA+TGG - chr1_3:61009777-61009796 None:intergenic 35.0%
CAAACCTTTCATGAAAGAGA+GGG - chr1_3:61010129-61010148 None:intergenic 35.0%
ACAAACCTTTCATGAAAGAG+AGG - chr1_3:61010130-61010149 None:intergenic 35.0%
GGAGAGTTAAATAGCAATTG+TGG - chr1_3:61010160-61010179 None:intergenic 35.0%
TTCTTAACAAGAGAGCTGAA+AGG + chr1_3:61010455-61010474 Msa0130600:CDS 35.0%
TCAGGCAACAAAAGTAATTC+CGG - chr1_3:61010993-61011012 None:intergenic 35.0%
AAGACTTCTTTAACATCAGC+AGG - chr1_3:61011371-61011390 None:intergenic 35.0%
TGCTGATGTTAAAGAAGTCT+TGG + chr1_3:61011370-61011389 Msa0130600:CDS 35.0%
! TGGACTTTTGCTTGTTTATC+AGG + chr1_3:61011543-61011562 Msa0130600:intron 35.0%
TCAAAAAGTTACTTGCCCAT+AGG + chr1_3:61011722-61011741 Msa0130600:intron 35.0%
CAAAAAGTTACTTGCCCATA+GGG + chr1_3:61011723-61011742 Msa0130600:intron 35.0%
TTTATCAAAACAGGCCCTAT+GGG - chr1_3:61011740-61011759 None:intergenic 35.0%
GCCCTTATCATAATAAGTGT+TGG - chr1_3:61011786-61011805 None:intergenic 35.0%
GCTTATGTATAAGCTTGCAT+AGG + chr1_3:61011804-61011823 Msa0130600:intron 35.0%
!!! GTTTGGATTGGCTTATTTTG+TGG - chr1_3:61011986-61012005 None:intergenic 35.0%
CAAAATAAGCCAATCCAAAC+AGG + chr1_3:61011986-61012005 Msa0130600:intron 35.0%
! GACATGTTTACATTAGGTTG+CGG + chr1_3:61012043-61012062 Msa0130600:intron 35.0%
! ACATGTTTACATTAGGTTGC+GGG + chr1_3:61012044-61012063 Msa0130600:intron 35.0%
ATGGTTGGATATTCTGATTC+TGG + chr1_3:61012277-61012296 Msa0130600:CDS 35.0%
ACTGAATAGCCAGATATGTA+GGG - chr1_3:61012438-61012457 None:intergenic 35.0%
CATACCATTAAGTTTCAAGC+AGG - chr1_3:61012540-61012559 None:intergenic 35.0%
GCTTGAAACTTAATGGTATG+AGG + chr1_3:61012540-61012559 Msa0130600:intron 35.0%
!!! GATGGTGGCTGTAATTTTTT+TGG + chr1_3:61012564-61012583 Msa0130600:intron 35.0%
! TGTCACTTATTTACGATCCA+AGG - chr1_3:61012670-61012689 None:intergenic 35.0%
AAATGGTAGAGGCTAAGTTT+GGG + chr1_3:61013040-61013059 Msa0130600:CDS 35.0%
! GATTTTCGTAGACTACATTG+CGG - chr1_3:61013206-61013225 None:intergenic 35.0%
! ACCTTATTGAGATGGTGTTA+GGG + chr1_3:61013493-61013512 Msa0130600:CDS 35.0%
CTTTGCTTATCACCGTAAAT+GGG + chr1_3:61013784-61013803 Msa0130600:CDS 35.0%
! TAGGTTTGTTCAGTAAAGGT+TGG + chr1_3:61013906-61013925 Msa0130600:three_prime_UTR 35.0%
!! AAGGTTGGTATTAGCCATTA+TGG + chr1_3:61013921-61013940 Msa0130600:three_prime_UTR 35.0%
GTATTAGCCATTATGGTGAA+TGG + chr1_3:61013928-61013947 Msa0130600:three_prime_UTR 35.0%
! ATTAAGCTTTTCCTGCAATC+TGG + chr1_3:61014000-61014019 Msa0130600:three_prime_UTR 35.0%
ATTGTTCGGGCAATCAAATA+TGG + chr1_3:61014083-61014102 Msa0130600:three_prime_UTR 35.0%
TTGTTCGGGCAATCAAATAT+GGG + chr1_3:61014084-61014103 Msa0130600:three_prime_UTR 35.0%
AGTGTTGTGGTGTGGAAAAA+GGG - chr1_3:61005434-61005453 None:intergenic 40.0%
TACAATCATCATCGAAGCTC+TGG - chr1_3:61005664-61005683 None:intergenic 40.0%
AGAGCTTCGATGATGATTGT+AGG + chr1_3:61005663-61005682 Msa0130600:CDS 40.0%
GATGATGATTGTAGGTTGCT+TGG + chr1_3:61005671-61005690 Msa0130600:CDS 40.0%
! TTCGAGTTTGTCAACAAAGG+TGG - chr1_3:61005735-61005754 None:intergenic 40.0%
AGTGGGGTATGAAGAAAAAG+TGG - chr1_3:61005811-61005830 None:intergenic 40.0%
! GATTTTCACATTCAGCAAGG+GGG - chr1_3:61005924-61005943 None:intergenic 40.0%
GTATAGCTGAAACTCACCAT+AGG + chr1_3:61006171-61006190 Msa0130600:CDS 40.0%
AACATAAGCACTTGTGTGAC+CGG + chr1_3:61006292-61006311 Msa0130600:intron 40.0%
TGTGTTGTAAAGATCATCCG+GGG - chr1_3:61006651-61006670 None:intergenic 40.0%
CTGTGTTGTAAAGATCATCC+GGG - chr1_3:61006652-61006671 None:intergenic 40.0%
TTACAACACAGTCTGCAAAC+AGG + chr1_3:61006661-61006680 Msa0130600:CDS 40.0%
! AGCTTTATAGTGACGTGCAA+TGG - chr1_3:61006742-61006761 None:intergenic 40.0%
GAATGTAATGTCTATACCGC+TGG + chr1_3:61006847-61006866 Msa0130600:intron 40.0%
CTGACACGTCGTAAATAATG+AGG - chr1_3:61007548-61007567 None:intergenic 40.0%
! CTATCCATTTTGCAGCATAC+TGG + chr1_3:61007651-61007670 Msa0130600:intron 40.0%
CTTTCCAGTATGCTGCAAAA+TGG - chr1_3:61007658-61007677 None:intergenic 40.0%
ACTTGCACTCCCATAAAGTT+TGG + chr1_3:61007690-61007709 Msa0130600:CDS 40.0%
! CTCCCATAAAGTTTGGAACT+TGG + chr1_3:61007697-61007716 Msa0130600:CDS 40.0%
AAATCCAAACGTTACCGCAA+AGG + chr1_3:61007740-61007759 Msa0130600:CDS 40.0%
GGCTATTGACCTCTATATTC+GGG + chr1_3:61008065-61008084 Msa0130600:CDS 40.0%
TATCCACTTCCCGAATATAG+AGG - chr1_3:61008077-61008096 None:intergenic 40.0%
ACTTTCAACGAACAGCGTTT+GGG - chr1_3:61008258-61008277 None:intergenic 40.0%
TACTTTCAACGAACAGCGTT+TGG - chr1_3:61008259-61008278 None:intergenic 40.0%
! TAGCCACTTCTAAGAGTTGA+TGG + chr1_3:61008572-61008591 Msa0130600:intron 40.0%
TGACCATCAACTCTTAGAAG+TGG - chr1_3:61008578-61008597 None:intergenic 40.0%
! AAGTGACTGACTTCTATTCG+TGG - chr1_3:61008655-61008674 None:intergenic 40.0%
TCGACAGATCATTTGAGTGT+CGG - chr1_3:61008842-61008861 None:intergenic 40.0%
TTTCTCGTGCAATCAGAAAG+GGG - chr1_3:61008871-61008890 None:intergenic 40.0%
GGTTGACTAGAGTTGTAAGA+GGG - chr1_3:61009235-61009254 None:intergenic 40.0%
AAAACTGGACTTTCCTGTCT+GGG - chr1_3:61009284-61009303 None:intergenic 40.0%
TTTCCCAGGACAACTCTATA+AGG - chr1_3:61009352-61009371 None:intergenic 40.0%
AGTTGTCCTGGGAAATGTAA+AGG + chr1_3:61009357-61009376 Msa0130600:CDS 40.0%
CCTTATCCTTTACATTTCCC+AGG - chr1_3:61009366-61009385 None:intergenic 40.0%
CCTGGGAAATGTAAAGGATA+AGG + chr1_3:61009363-61009382 Msa0130600:CDS 40.0%
ACGGAAGATGTAGAAATGCA+AGG - chr1_3:61009540-61009559 None:intergenic 40.0%
GCTATAAAAAAAGGGCAACC+CGG + chr1_3:61009706-61009725 Msa0130600:intron 40.0%
CCTGTGTAAAAAACAGGGTA+AGG - chr1_3:61009801-61009820 None:intergenic 40.0%
!!! CCTTACCCTGTTTTTTACAC+AGG + chr1_3:61009798-61009817 Msa0130600:intron 40.0%
!!! TACCCTGTTTTTTACACAGG+AGG + chr1_3:61009801-61009820 Msa0130600:intron 40.0%
AGCCTCCTGTGTAAAAAACA+GGG - chr1_3:61009806-61009825 None:intergenic 40.0%
! GAAGAAGTTCTAACCGTCTA+CGG - chr1_3:61010001-61010020 None:intergenic 40.0%
ACGGTTAGAACTTCTTCTTG+AGG + chr1_3:61010004-61010023 Msa0130600:CDS 40.0%
TGCATGTGACTATGATCCTT+TGG + chr1_3:61010031-61010050 Msa0130600:CDS 40.0%
GTACCAGAGATTCATAACAG+AGG - chr1_3:61010097-61010116 None:intergenic 40.0%
CATGTCTTCAGCAATCATGT+GGG + chr1_3:61010179-61010198 Msa0130600:intron 40.0%
ATTCGTAGAGTTGCAACCTT+TGG + chr1_3:61010238-61010257 Msa0130600:CDS 40.0%
! TAGAGTTGCAACCTTTGGAA+TGG + chr1_3:61010243-61010262 Msa0130600:CDS 40.0%
AATGAAGCTTGATTTACGCC+AGG + chr1_3:61010270-61010289 Msa0130600:CDS 40.0%
TAGCTGCATTACAGGAATCT+GGG + chr1_3:61010348-61010367 Msa0130600:intron 40.0%
TCCATACTAACAGGAACTAG+TGG - chr1_3:61010488-61010507 None:intergenic 40.0%
ACTAGTTCCTGTTAGTATGG+AGG + chr1_3:61010487-61010506 Msa0130600:CDS 40.0%
TGGAAATGCAGTTAAGACTC+CGG + chr1_3:61010971-61010990 Msa0130600:intron 40.0%
CTGGAAATGCAGTTAAGACT+CGG + chr1_3:61010970-61010989 Msa0130600:intron 40.0%
TGGAAATGCAGTTAAGACTC+GGG + chr1_3:61010971-61010990 Msa0130600:intron 40.0%
TGTGATCATTTCAACGTTCG+TGG + chr1_3:61011311-61011330 Msa0130600:intron 40.0%
CGTTCGTGGCAATTTATGAT+TGG + chr1_3:61011325-61011344 Msa0130600:intron 40.0%
AGGAGCCTATGTGATATCTA+TGG + chr1_3:61011433-61011452 Msa0130600:CDS 40.0%
GGCAATTATTCATACACTCG+AGG - chr1_3:61011459-61011478 None:intergenic 40.0%
TCTGTAAAAGCTCTACTGCA+AGG - chr1_3:61011579-61011598 None:intergenic 40.0%
! TGCAGTAGAGCTTTTACAGA+AGG + chr1_3:61011579-61011598 Msa0130600:CDS 40.0%
! AGCTTTTACAGAAGGATGCA+CGG + chr1_3:61011587-61011606 Msa0130600:CDS 40.0%
CTTGCTGCTATTGGAGAATT+GGG + chr1_3:61011610-61011629 Msa0130600:CDS 40.0%
GTTTATCAAAACAGGCCCTA+TGG - chr1_3:61011741-61011760 None:intergenic 40.0%
ATACAGATATAGGGCCTGTT+TGG - chr1_3:61012003-61012022 None:intergenic 40.0%
CCTTCACGGTTTCAAATAGA+GGG - chr1_3:61012074-61012093 None:intergenic 40.0%
TCCTTCACGGTTTCAAATAG+AGG - chr1_3:61012075-61012094 None:intergenic 40.0%
CACGTCATTAAGAACCACAA+TGG + chr1_3:61012153-61012172 Msa0130600:CDS 40.0%
CTGTATATGCAGGTTATGGT+TGG + chr1_3:61012262-61012281 Msa0130600:intron 40.0%
TCTGATTCTGGTAAAGATGC+TGG + chr1_3:61012289-61012308 Msa0130600:CDS 40.0%
TTGGGAACTTTACAAAGCTC+AGG + chr1_3:61012327-61012346 Msa0130600:CDS 40.0%
GTAGCTGCTTGCAATGATTA+TGG + chr1_3:61012358-61012377 Msa0130600:CDS 40.0%
GACTGAATAGCCAGATATGT+AGG - chr1_3:61012439-61012458 None:intergenic 40.0%
AACTTAATGGTATGAGGCGA+TGG + chr1_3:61012546-61012565 Msa0130600:intron 40.0%
!! ATGAGAGGTTGGTGTGTTAA+TGG + chr1_3:61012622-61012641 Msa0130600:intron 40.0%
!! ACTTCTAGGACTTGATTCCT+TGG + chr1_3:61012650-61012669 Msa0130600:intron 40.0%
! GAGTCTTATGACCAGTCTTA+AGG + chr1_3:61012909-61012928 Msa0130600:intron 40.0%
GAAATGGTAGAGGCTAAGTT+TGG + chr1_3:61013039-61013058 Msa0130600:CDS 40.0%
AGTTGTCTAACAGCTATCTG+TGG - chr1_3:61013069-61013088 None:intergenic 40.0%
! ACTACGCCAATTTTCATCTC+GGG - chr1_3:61013145-61013164 None:intergenic 40.0%
! GACTACGCCAATTTTCATCT+CGG - chr1_3:61013146-61013165 None:intergenic 40.0%
TGAAAATTGGCGTAGTCTCA+TGG + chr1_3:61013149-61013168 Msa0130600:CDS 40.0%
TGGAAGTAAGAAAGGAACTC+TGG - chr1_3:61013228-61013247 None:intergenic 40.0%
TTGTGTTCTTCCTTCTTGCA+GGG - chr1_3:61013299-61013318 None:intergenic 40.0%
TTTGTGTTCTTCCTTCTTGC+AGG - chr1_3:61013300-61013319 None:intergenic 40.0%
TGCAAGAAGGAAGAACACAA+AGG + chr1_3:61013299-61013318 Msa0130600:CDS 40.0%
GCAAGAAGGAAGAACACAAA+GGG + chr1_3:61013300-61013319 Msa0130600:CDS 40.0%
AGGAAGAACACAAAGGGAAT+TGG + chr1_3:61013306-61013325 Msa0130600:CDS 40.0%
!! TTGAAAGGTGCTTGTGAGAA+AGG + chr1_3:61013411-61013430 Msa0130600:CDS 40.0%
TGCTTGTGAGAAAGGTCATA+GGG + chr1_3:61013419-61013438 Msa0130600:CDS 40.0%
GACCTTATTGAGATGGTGTT+AGG + chr1_3:61013492-61013511 Msa0130600:CDS 40.0%
TCCCTAACACCATCTCAATA+AGG - chr1_3:61013497-61013516 None:intergenic 40.0%
AAGGGCTTCATCATAGTACT+TGG - chr1_3:61013538-61013557 None:intergenic 40.0%
AAGTTTGTGCTCGTGATTAG+TGG + chr1_3:61013618-61013637 Msa0130600:CDS 40.0%
AGTTTGTGCTCGTGATTAGT+GGG + chr1_3:61013619-61013638 Msa0130600:CDS 40.0%
AGCAGAATAATAGGAGCTTG+AGG + chr1_3:61013655-61013674 Msa0130600:CDS 40.0%
AGAATAATAGGAGCTTGAGG+AGG + chr1_3:61013658-61013677 Msa0130600:CDS 40.0%
AGGTTCATGGGATTGAGAAA+TGG - chr1_3:61013702-61013721 None:intergenic 40.0%
! GCAAAGCATCTCTGAGTTTA+AGG - chr1_3:61013770-61013789 None:intergenic 40.0%
GCTTTGCTTATCACCGTAAA+TGG + chr1_3:61013783-61013802 Msa0130600:CDS 40.0%
TTGAGAACTTACCAGATTGC+AGG - chr1_3:61014014-61014033 None:intergenic 40.0%
CAGTGTTGTGGTGTGGAAAA+AGG - chr1_3:61005435-61005454 None:intergenic 45.0%
ATCTTAGTGCAGCAGTGTTG+TGG - chr1_3:61005447-61005466 None:intergenic 45.0%
TCAAACAAAGAAGCGACACG+TGG - chr1_3:61005498-61005517 None:intergenic 45.0%
GACATTCTTCACCGTGAAGT+TGG + chr1_3:61005707-61005726 Msa0130600:CDS 45.0%
CAAAGGTGGTACCAACTTCA+CGG - chr1_3:61005721-61005740 None:intergenic 45.0%
! CTTCTGATCAAAGGTGTGTC+CGG - chr1_3:61005968-61005987 None:intergenic 45.0%
GGCAGAGTGCATGTAATATG+AGG + chr1_3:61006024-61006043 Msa0130600:intron 45.0%
GCATGTAATATGAGGCAAGC+AGG + chr1_3:61006032-61006051 Msa0130600:CDS 45.0%
GCAAGCAGGTATAGTGAACA+TGG + chr1_3:61006046-61006065 Msa0130600:CDS 45.0%
TATCCAAACAGGGCCTACAT+AGG + chr1_3:61006508-61006527 Msa0130600:intron 45.0%
ATCCAAACAGGGCCTACATA+GGG + chr1_3:61006509-61006528 Msa0130600:intron 45.0%
TTCACAGGGTTCGTAAAGGA+GGG + chr1_3:61006561-61006580 Msa0130600:intron 45.0%
GGTTCGTAAAGGAGGGAATA+TGG + chr1_3:61006568-61006587 Msa0130600:CDS 45.0%
TGTGTTTAACCAGCTTGTGC+AGG + chr1_3:61006616-61006635 Msa0130600:CDS 45.0%
GTGTTTAACCAGCTTGTGCA+GGG + chr1_3:61006617-61006636 Msa0130600:CDS 45.0%
TATGGCAGACAGATGAGCTT+AGG + chr1_3:61007327-61007346 Msa0130600:CDS 45.0%
!! CATCAACTGGAGTGGGTTTT+TGG - chr1_3:61007355-61007374 None:intergenic 45.0%
CTAGCTTCATCAACTGGAGT+GGG - chr1_3:61007362-61007381 None:intergenic 45.0%
! TCTAGCTTCATCAACTGGAG+TGG - chr1_3:61007363-61007382 None:intergenic 45.0%
! ATATAGTGGAGCAGTCACTC+TGG + chr1_3:61007513-61007532 Msa0130600:CDS 45.0%
! TTTATGGGAGTGCAAGTCAG+TGG - chr1_3:61007687-61007706 None:intergenic 45.0%
! AAGTTTGGAACTTGGATGGG+AGG + chr1_3:61007705-61007724 Msa0130600:CDS 45.0%
! AATCGCTGATAGTGAGCACT+TGG - chr1_3:61007786-61007805 None:intergenic 45.0%
!!! TCGTAGTTTTGTTATGGGGG+TGG + chr1_3:61007884-61007903 Msa0130600:intron 45.0%
! GAAACAGCTTTTGTGACCTG+AGG - chr1_3:61008027-61008046 None:intergenic 45.0%
TGACCTCTATATTCGGGAAG+TGG + chr1_3:61008071-61008090 Msa0130600:CDS 45.0%
GAGATTCTTCCTAGTGCCAA+GGG + chr1_3:61008196-61008215 Msa0130600:intron 45.0%
AAGGTGAATGCTAAGTCCCT+TGG - chr1_3:61008215-61008234 None:intergenic 45.0%
! TGGACTGATTCCAACTCTCA+TGG - chr1_3:61008635-61008654 None:intergenic 45.0%
! GCTCATTTACCCTCTTTTGC+TGG + chr1_3:61008696-61008715 Msa0130600:CDS 45.0%
TCATGCACGAGGAATGATGA+GGG + chr1_3:61008936-61008955 Msa0130600:intron 45.0%
! GTTCTGAGTGTAGTTGGACT+TGG - chr1_3:61009136-61009155 None:intergenic 45.0%
AGTCCAACTACACTCAGAAC+TGG + chr1_3:61009136-61009155 Msa0130600:CDS 45.0%
!! TTGCCAGTTCTGAGTGTAGT+TGG - chr1_3:61009142-61009161 None:intergenic 45.0%
GAGTTGTAAGAGGGAGAAGA+TGG - chr1_3:61009226-61009245 None:intergenic 45.0%
CGGTTGACTAGAGTTGTAAG+AGG - chr1_3:61009236-61009255 None:intergenic 45.0%
GAAAACTGGACTTTCCTGTC+TGG - chr1_3:61009285-61009304 None:intergenic 45.0%
! GAGCAATTCCAGCAAGTTGA+GGG - chr1_3:61009330-61009349 None:intergenic 45.0%
TGCTCCTTATAGAGTTGTCC+TGG + chr1_3:61009345-61009364 Msa0130600:CDS 45.0%
GCTCCTTATAGAGTTGTCCT+GGG + chr1_3:61009346-61009365 Msa0130600:CDS 45.0%
CAGCCTCCTGTGTAAAAAAC+AGG - chr1_3:61009807-61009826 None:intergenic 45.0%
! TGAAACAGCTGACCAGCTTT+TGG + chr1_3:61010061-61010080 Msa0130600:CDS 45.0%
GATTCATAACAGAGGAGCAG+AGG - chr1_3:61010089-61010108 None:intergenic 45.0%
GCTCCTCTGTTATGAATCTC+TGG + chr1_3:61010091-61010110 Msa0130600:CDS 45.0%
CCTTTCATGAAAGAGAGGGA+AGG - chr1_3:61010125-61010144 None:intergenic 45.0%
CCTTCCCTCTCTTTCATGAA+AGG + chr1_3:61010122-61010141 Msa0130600:intron 45.0%
CCACATGATTGCTGAAGACA+TGG - chr1_3:61010181-61010200 None:intergenic 45.0%
CCATGTCTTCAGCAATCATG+TGG + chr1_3:61010178-61010197 Msa0130600:intron 45.0%
TTCAGCAATCATGTGGGTCT+GGG + chr1_3:61010185-61010204 Msa0130600:intron 45.0%
! CCTGTAATGCAGCTAGTTTC+AGG - chr1_3:61010343-61010362 None:intergenic 45.0%
CCTGAAACTAGCTGCATTAC+AGG + chr1_3:61010340-61010359 Msa0130600:intron 45.0%
CTAGCTGCATTACAGGAATC+TGG + chr1_3:61010347-61010366 Msa0130600:intron 45.0%
CAAGAGAGCTGAAAGGAAAG+AGG + chr1_3:61010462-61010481 Msa0130600:CDS 45.0%
GCCACTAGTTCCTGTTAGTA+TGG + chr1_3:61010484-61010503 Msa0130600:CDS 45.0%
TGTCTCACCTCCATACTAAC+AGG - chr1_3:61010497-61010516 None:intergenic 45.0%
TGGAATGATGCAGCAGATCA+AGG - chr1_3:61010840-61010859 None:intergenic 45.0%
! GAACTAGGGAGCGATTTTCT+AGG + chr1_3:61011413-61011432 Msa0130600:CDS 45.0%
CGAGGCCATAGATATCACAT+AGG - chr1_3:61011441-61011460 None:intergenic 45.0%
! GCTTGCTGCTATTGGAGAAT+TGG + chr1_3:61011609-61011628 Msa0130600:CDS 45.0%
GATATAGGGCCTGTTTGGAT+TGG - chr1_3:61011998-61012017 None:intergenic 45.0%
! CCCTCTATTTGAAACCGTGA+AGG + chr1_3:61012071-61012090 Msa0130600:CDS 45.0%
TAACTGAACCAGCACCTCTT+AGG - chr1_3:61012098-61012117 None:intergenic 45.0%
GAACCACAATGGACATCAAG+AGG + chr1_3:61012164-61012183 Msa0130600:CDS 45.0%
GGAACTTTACAAAGCTCAGG+AGG + chr1_3:61012330-61012349 Msa0130600:CDS 45.0%
TTAATGGTATGAGGCGATGG+TGG + chr1_3:61012549-61012568 Msa0130600:intron 45.0%
AACACACCAACCTCTCATGT+GGG - chr1_3:61012620-61012639 None:intergenic 45.0%
TAACACACCAACCTCTCATG+TGG - chr1_3:61012621-61012640 None:intergenic 45.0%
ATTCAGAAACGAGCTGTCAG+CGG - chr1_3:61012946-61012965 None:intergenic 45.0%
TGTTTCCCATGGTGTATTGC+AGG + chr1_3:61012990-61013009 Msa0130600:intron 45.0%
GTTTCCCATGGTGTATTGCA+GGG + chr1_3:61012991-61013010 Msa0130600:intron 45.0%
TGTTCCCTGCAATACACCAT+GGG - chr1_3:61012998-61013017 None:intergenic 45.0%
GTGTATTGCAGGGAACACTT+CGG + chr1_3:61013001-61013020 Msa0130600:intron 45.0%
! CTACGCCAATTTTCATCTCG+GGG - chr1_3:61013144-61013163 None:intergenic 45.0%
TGGCTTCGTGGAAGTAAGAA+AGG - chr1_3:61013236-61013255 None:intergenic 45.0%
! AAACCTTCGTGCTATTCCCT+GGG + chr1_3:61013329-61013348 Msa0130600:CDS 45.0%
CTATTCCCTGGGTATTTGCT+TGG + chr1_3:61013340-61013359 Msa0130600:CDS 45.0%
TGAGTCCAAGCAAATACCCA+GGG - chr1_3:61013348-61013367 None:intergenic 45.0%
TTGAGTCCAAGCAAATACCC+AGG - chr1_3:61013349-61013368 None:intergenic 45.0%
CCAAGCTGGAAGAACAAATC+TGG - chr1_3:61013373-61013392 None:intergenic 45.0%
! CCAGATTTGTTCTTCCAGCT+TGG + chr1_3:61013370-61013389 Msa0130600:CDS 45.0%
TTTGTTCTTCCAGCTTGGCT+CGG + chr1_3:61013375-61013394 Msa0130600:CDS 45.0%
GTGCTTGTGAGAAAGGTCAT+AGG + chr1_3:61013418-61013437 Msa0130600:CDS 45.0%
! GCACAAACTTTTCAGCTGTC+AGG - chr1_3:61013608-61013627 None:intergenic 45.0%
TAATAGGAGCTTGAGGAGGT+TGG + chr1_3:61013662-61013681 Msa0130600:CDS 45.0%
! TGGAGATTCTGAAGAGGTTG+AGG + chr1_3:61013730-61013749 Msa0130600:CDS 45.0%
TGTTCAGAAGCAGCGTTAAC+CGG - chr1_3:61013832-61013851 None:intergenic 45.0%
!!! TTTTTTTTTCAAAAAAAAAT+TGG - chr1_3:61012512-61012531 None:intergenic 5.0%
!! TGAAGCACTGACACAGACAC+CGG + chr1_3:61005946-61005965 Msa0130600:intron 50.0%
TACCCTATGTAGGCCCTGTT+TGG - chr1_3:61006514-61006533 None:intergenic 50.0%
ACAGGGCCTACATAGGGTAA+TGG + chr1_3:61006515-61006534 Msa0130600:intron 50.0%
CGTGTTCACAGGGTTCGTAA+AGG + chr1_3:61006557-61006576 Msa0130600:intron 50.0%
GTTCACAGGGTTCGTAAAGG+AGG + chr1_3:61006560-61006579 Msa0130600:intron 50.0%
TTTAACCAGCTTGTGCAGGG+TGG + chr1_3:61006620-61006639 Msa0130600:CDS 50.0%
CGATCTTCAGGGCTAAGATC+AGG - chr1_3:61007139-61007158 None:intergenic 50.0%
! CCAGCTCTAGCTTCATCAAC+TGG - chr1_3:61007368-61007387 None:intergenic 50.0%
!! CCAGTTGATGAAGCTAGAGC+TGG + chr1_3:61007365-61007384 Msa0130600:CDS 50.0%
TGGATGGGAGGTGATAGAGA+TGG + chr1_3:61007717-61007736 Msa0130600:CDS 50.0%
CTCACCTTTGCGGTAACGTT+TGG - chr1_3:61007747-61007766 None:intergenic 50.0%
! GCTGATAGTGAGCACTTGGA+TGG - chr1_3:61007782-61007801 None:intergenic 50.0%
CGAGATTCTTCCTAGTGCCA+AGG + chr1_3:61008195-61008214 Msa0130600:intron 50.0%
ATGCTAAGTCCCTTGGCACT+AGG - chr1_3:61008208-61008227 None:intergenic 50.0%
ACGAGAATCGCCATGAGAGT+TGG + chr1_3:61008622-61008641 Msa0130600:CDS 50.0%
! GAGGGTAAATGAGCTCTAGC+TGG - chr1_3:61008690-61008709 None:intergenic 50.0%
GTCATGCACGAGGAATGATG+AGG + chr1_3:61008935-61008954 Msa0130600:intron 50.0%
CATGCACGAGGAATGATGAG+GGG + chr1_3:61008937-61008956 Msa0130600:intron 50.0%
GCATCCTAGACTAGACATCC+CGG + chr1_3:61009005-61009024 Msa0130600:CDS 50.0%
CATCCTAGACTAGACATCCC+GGG + chr1_3:61009006-61009025 Msa0130600:CDS 50.0%
TCTACCTTGTGATCAGGTCC+CGG - chr1_3:61009027-61009046 None:intergenic 50.0%
CTAGTCAACCGCTTTCTCAG+AGG + chr1_3:61009245-61009264 Msa0130600:CDS 50.0%
GGAGCAATTCCAGCAAGTTG+AGG - chr1_3:61009331-61009350 None:intergenic 50.0%
!! TGCAGGAGCTTTAAGTGCAC+CGG - chr1_3:61009728-61009747 None:intergenic 50.0%
TTAAAGCTCCTGCACACGCA+GGG + chr1_3:61009734-61009753 Msa0130600:intron 50.0%
AGCTTGAGAGAAGCCGTAGA+CGG + chr1_3:61009985-61010004 Msa0130600:intron 50.0%
CTTCAGCAATCATGTGGGTC+TGG + chr1_3:61010184-61010203 Msa0130600:intron 50.0%
TCAGCAATCATGTGGGTCTG+GGG + chr1_3:61010186-61010205 Msa0130600:intron 50.0%
TTCCGAATCGCTGCTGAACT+AGG + chr1_3:61011398-61011417 Msa0130600:CDS 50.0%
TCCGAATCGCTGCTGAACTA+GGG + chr1_3:61011399-61011418 Msa0130600:CDS 50.0%
TCCCTAGTTCAGCAGCGATT+CGG - chr1_3:61011403-61011422 None:intergenic 50.0%
! GAATTGGGAAGAGCATGTCC+TGG + chr1_3:61011625-61011644 Msa0130600:CDS 50.0%
TGTCCTGGTGGAACGTAAGT+AGG + chr1_3:61011640-61011659 Msa0130600:intron 50.0%
GTTCCTACTTACGTTCCACC+AGG - chr1_3:61011646-61011665 None:intergenic 50.0%
GAAACCGTGAAGGACCTAAG+AGG + chr1_3:61012081-61012100 Msa0130600:CDS 50.0%
AGCACCTCTTAGGTCCTTCA+CGG - chr1_3:61012088-61012107 None:intergenic 50.0%
!! GAGGTGCTGGTTCAGTTATC+CGG + chr1_3:61012100-61012119 Msa0130600:CDS 50.0%
GGTTCTTAATGACGTGCTCG+CGG - chr1_3:61012149-61012168 None:intergenic 50.0%
GCACCTCTTGATGTCCATTG+TGG - chr1_3:61012170-61012189 None:intergenic 50.0%
CTATTCAGTCCCAACCACCT+GGG + chr1_3:61012449-61012468 Msa0130600:CDS 50.0%
TAACCTACCATCACAGACCC+AGG - chr1_3:61012469-61012488 None:intergenic 50.0%
TATCCAGCATCCCACATGAG+AGG + chr1_3:61012607-61012626 Msa0130600:intron 50.0%
GTGTTCCCTGCAATACACCA+TGG - chr1_3:61012999-61013018 None:intergenic 50.0%
CTCTACCATTTCTCCCTGCT+CGG - chr1_3:61013031-61013050 None:intergenic 50.0%
TCCCACCCCGAGATGAAAAT+TGG + chr1_3:61013136-61013155 Msa0130600:CDS 50.0%
! GCCAATTTTCATCTCGGGGT+GGG - chr1_3:61013140-61013159 None:intergenic 50.0%
! GAAACCTTCGTGCTATTCCC+TGG + chr1_3:61013328-61013347 Msa0130600:CDS 50.0%
ATACCCAGGGAATAGCACGA+AGG - chr1_3:61013335-61013354 None:intergenic 50.0%
GGAGTTGGAGCAGGTTTGAA+AGG + chr1_3:61013396-61013415 Msa0130600:CDS 50.0%
TGATGAAGCCCTTGTGTCAG+AGG + chr1_3:61013545-61013564 Msa0130600:CDS 50.0%
TTGCCTCTCCTCTGACACAA+GGG - chr1_3:61013556-61013575 None:intergenic 50.0%
TCAGAGGAGAGGCAAGAACT+CGG + chr1_3:61013561-61013580 Msa0130600:CDS 50.0%
CAATCCCATGAACCTGTTGC+AGG + chr1_3:61013707-61013726 Msa0130600:CDS 50.0%
TCCACCTGCAACAGGTTCAT+GGG - chr1_3:61013714-61013733 None:intergenic 50.0%
TCAGAATCTCCACCTGCAAC+AGG - chr1_3:61013722-61013741 None:intergenic 50.0%
! TGCAGGTGGAGATTCTGAAG+AGG + chr1_3:61013724-61013743 Msa0130600:CDS 50.0%
ACCGTAAATGGGATTGCTGC+TGG + chr1_3:61013795-61013814 Msa0130600:CDS 50.0%
CCCAGCAGCAATCCCATTTA+CGG - chr1_3:61013799-61013818 None:intergenic 50.0%
CCGTAAATGGGATTGCTGCT+GGG + chr1_3:61013796-61013815 Msa0130600:CDS 50.0%
AGTGCAGCAGTGTTGTGGTG+TGG - chr1_3:61005442-61005461 None:intergenic 55.0%
AAACTCCACCCTGCACAAGC+TGG - chr1_3:61006628-61006647 None:intergenic 55.0%
GGAGTGCAAGTCAGTGGAAG+TGG - chr1_3:61007681-61007700 None:intergenic 55.0%
GCTCTAGCTGGAAGCTGTGT+TGG - chr1_3:61008678-61008697 None:intergenic 55.0%
CTACCTTGTGATCAGGTCCC+GGG - chr1_3:61009026-61009045 None:intergenic 55.0%
!! GCAGGAGCTTTAAGTGCACC+GGG - chr1_3:61009727-61009746 None:intergenic 55.0%
CTTAAAGCTCCTGCACACGC+AGG + chr1_3:61009733-61009752 Msa0130600:intron 55.0%
! ATAATGGTGGGACCCCTTCC+CGG - chr1_3:61009761-61009780 None:intergenic 55.0%
GGAAGGGGTCCCACCATTAT+TGG + chr1_3:61009761-61009780 Msa0130600:intron 55.0%
GGAGCAGAGGTTCCAAAAGC+TGG - chr1_3:61010076-61010095 None:intergenic 55.0%
!! GATGCACGGCTTGCTGCTAT+TGG + chr1_3:61011601-61011620 Msa0130600:CDS 55.0%
! TTGGGAAGAGCATGTCCTGG+TGG + chr1_3:61011628-61011647 Msa0130600:CDS 55.0%
! GTGAAGGACCTAAGAGGTGC+TGG + chr1_3:61012087-61012106 Msa0130600:CDS 55.0%
GTTCCCAAGCAGCAGTGAAG+CGG - chr1_3:61012315-61012334 None:intergenic 55.0%
GTTACACTGTTCCATGGCCG+TGG + chr1_3:61012388-61012407 Msa0130600:CDS 55.0%
CTCGACCAATACTGCCTCCA+CGG - chr1_3:61012408-61012427 None:intergenic 55.0%
GCTATTCAGTCCCAACCACC+TGG + chr1_3:61012448-61012467 Msa0130600:CDS 55.0%
CATCACAGACCCAGGTGGTT+GGG - chr1_3:61012461-61012480 None:intergenic 55.0%
CAACCTCTCATGTGGGATGC+TGG - chr1_3:61012613-61012632 None:intergenic 55.0%
CAGCATCCCACATGAGAGGT+TGG + chr1_3:61012611-61012630 Msa0130600:intron 55.0%
AACACTTCGGTCTACCGAGC+AGG + chr1_3:61013014-61013033 Msa0130600:CDS 55.0%
ACACTTCGGTCTACCGAGCA+GGG + chr1_3:61013015-61013034 Msa0130600:CDS 55.0%
GTCTACCGAGCAGGGAGAAA+TGG + chr1_3:61013023-61013042 Msa0130600:CDS 55.0%
CGAGCAGGGAGAAATGGTAG+AGG + chr1_3:61013029-61013048 Msa0130600:CDS 55.0%
! TTTTCATCTCGGGGTGGGAG+AGG - chr1_3:61013135-61013154 None:intergenic 55.0%
! CGCCAATTTTCATCTCGGGG+TGG - chr1_3:61013141-61013160 None:intergenic 55.0%
GAGCTCGGCTTCCTGAACAT+AGG + chr1_3:61013267-61013286 Msa0130600:CDS 55.0%
CAGGGCGACTACCTATGTTC+AGG - chr1_3:61013281-61013300 None:intergenic 55.0%
TAGGTAGTCGCCCTGCAAGA+AGG + chr1_3:61013286-61013305 Msa0130600:CDS 55.0%
AAGCCCTTGTGTCAGAGGAG+AGG + chr1_3:61013550-61013569 Msa0130600:CDS 55.0%
CTTGCCTCTCCTCTGACACA+AGG - chr1_3:61013557-61013576 None:intergenic 55.0%
TCCCATGAACCTGTTGCAGG+TGG + chr1_3:61013710-61013729 Msa0130600:CDS 55.0%
CTCCACCTGCAACAGGTTCA+TGG - chr1_3:61013715-61013734 None:intergenic 55.0%
ATGGGATTGCTGCTGGGATG+AGG + chr1_3:61013802-61013821 Msa0130600:CDS 55.0%
GCTGCTGGGATGAGGAATAC+CGG + chr1_3:61013810-61013829 Msa0130600:CDS 55.0%
TGTGCAGGGTGGAGTTTCCC+CGG + chr1_3:61006631-61006650 Msa0130600:CDS 60.0%
GGTCCCGGGATGTCTAGTCT+AGG - chr1_3:61009012-61009031 None:intergenic 60.0%
CATCCCGGGACCTGATCACA+AGG + chr1_3:61009020-61009039 Msa0130600:CDS 60.0%
! CCAGCAAGTTGAGGGAGCTG+TGG - chr1_3:61009322-61009341 None:intergenic 60.0%
CCACAGCTCCCTCAACTTGC+TGG + chr1_3:61009319-61009338 Msa0130600:CDS 60.0%
! TGGCCGCTTCACTGCTGCTT+GGG + chr1_3:61012309-61012328 Msa0130600:CDS 60.0%
ACACTGTTCCATGGCCGTGG+AGG + chr1_3:61012391-61012410 Msa0130600:CDS 60.0%
CAATACTGCCTCCACGGCCA+TGG - chr1_3:61012402-61012421 None:intergenic 60.0%
CATGGCCGTGGAGGCAGTAT+TGG + chr1_3:61012400-61012419 Msa0130600:CDS 60.0%
!! CGTGGAGGCAGTATTGGTCG+AGG + chr1_3:61012406-61012425 Msa0130600:CDS 60.0%
!! GGAGGCAGTATTGGTCGAGG+CGG + chr1_3:61012409-61012428 Msa0130600:CDS 60.0%
AGGCGGTGGCCCTACATATC+TGG + chr1_3:61012426-61012445 Msa0130600:CDS 60.0%
CCATCACAGACCCAGGTGGT+TGG - chr1_3:61012462-61012481 None:intergenic 60.0%
CCAACCACCTGGGTCTGTGA+TGG + chr1_3:61012459-61012478 Msa0130600:CDS 60.0%
CCTACCATCACAGACCCAGG+TGG - chr1_3:61012466-61012485 None:intergenic 60.0%
CCACCTGGGTCTGTGATGGT+AGG + chr1_3:61012463-61012482 Msa0130600:intron 60.0%
AGGAAGCCGAGCTCTGCTTC+AGG - chr1_3:61013261-61013280 None:intergenic 60.0%
!! CTTCCAGCTTGGCTCGGAGT+TGG + chr1_3:61013381-61013400 Msa0130600:CDS 60.0%
! GGGTCTGGGGTGCTAGCTGA+TGG + chr1_3:61010199-61010218 Msa0130600:CDS 65.0%
CTGGCCGCTTCACTGCTGCT+TGG + chr1_3:61012308-61012327 Msa0130600:CDS 65.0%
!! GGCAGTATTGGTCGAGGCGG+TGG + chr1_3:61012412-61012431 Msa0130600:CDS 65.0%
GGGTGGGAGAGGTGGACGAA+GGG - chr1_3:61013124-61013143 None:intergenic 65.0%
TCATCTCGGGGTGGGAGAGG+TGG - chr1_3:61013132-61013151 None:intergenic 65.0%
CTGCTTCAGGCGTGGCTTCG+TGG - chr1_3:61013248-61013267 None:intergenic 65.0%
GCCACGCCTGAAGCAGAGCT+CGG + chr1_3:61013252-61013271 Msa0130600:CDS 65.0%
GCTCCAACTCCGAGCCAAGC+TGG - chr1_3:61013387-61013406 None:intergenic 65.0%
!! GCTTGGCTCGGAGTTGGAGC+AGG + chr1_3:61013387-61013406 Msa0130600:CDS 65.0%
GCTCCTGCACACGCAGGGTC+CGG + chr1_3:61009739-61009758 Msa0130600:intron 70.0%
CTCCTGCACACGCAGGGTCC+GGG + chr1_3:61009740-61009759 Msa0130600:intron 70.0%
TTCCCGGACCCTGCGTGTGC+AGG - chr1_3:61009745-61009764 None:intergenic 70.0%
TGCACACGCAGGGTCCGGGA+AGG + chr1_3:61009744-61009763 Msa0130600:intron 70.0%
GCACACGCAGGGTCCGGGAA+GGG + chr1_3:61009745-61009764 Msa0130600:intron 70.0%
CACACGCAGGGTCCGGGAAG+GGG + chr1_3:61009746-61009765 Msa0130600:intron 70.0%
GGGGTGGGAGAGGTGGACGA+AGG - chr1_3:61013125-61013144 None:intergenic 70.0%
GCCGAGCTCTGCTTCAGGCG+TGG - chr1_3:61013256-61013275 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 61005424 61014140 61005424 ID=Msa0130600;Name=Msa0130600
chr1_3 mRNA 61005424 61014140 61005424 ID=Msa0130600-mRNA-1;Parent=Msa0130600;Name=Msa0130600-mRNA-1;_AED=0.08;_eAED=0.08;_QI=196|1|1|1|1|1|20|304|1039
chr1_3 exon 61005424 61005775 61005424 ID=Msa0130600-mRNA-1:exon:20140;Parent=Msa0130600-mRNA-1
chr1_3 exon 61006029 61006192 61006029 ID=Msa0130600-mRNA-1:exon:20141;Parent=Msa0130600-mRNA-1
chr1_3 exon 61006568 61006682 61006568 ID=Msa0130600-mRNA-1:exon:20142;Parent=Msa0130600-mRNA-1
chr1_3 exon 61006924 61007001 61006924 ID=Msa0130600-mRNA-1:exon:20143;Parent=Msa0130600-mRNA-1
chr1_3 exon 61007112 61007180 61007112 ID=Msa0130600-mRNA-1:exon:20144;Parent=Msa0130600-mRNA-1
chr1_3 exon 61007308 61007386 61007308 ID=Msa0130600-mRNA-1:exon:20145;Parent=Msa0130600-mRNA-1
chr1_3 exon 61007507 61007583 61007507 ID=Msa0130600-mRNA-1:exon:20146;Parent=Msa0130600-mRNA-1
chr1_3 exon 61007666 61007761 61007666 ID=Msa0130600-mRNA-1:exon:20147;Parent=Msa0130600-mRNA-1
chr1_3 exon 61008030 61008168 61008030 ID=Msa0130600-mRNA-1:exon:20148;Parent=Msa0130600-mRNA-1
chr1_3 exon 61008613 61008717 61008613 ID=Msa0130600-mRNA-1:exon:20149;Parent=Msa0130600-mRNA-1
chr1_3 exon 61008989 61009041 61008989 ID=Msa0130600-mRNA-1:exon:20150;Parent=Msa0130600-mRNA-1
chr1_3 exon 61009118 61009384 61009118 ID=Msa0130600-mRNA-1:exon:20151;Parent=Msa0130600-mRNA-1
chr1_3 exon 61009987 61010112 61009987 ID=Msa0130600-mRNA-1:exon:20152;Parent=Msa0130600-mRNA-1
chr1_3 exon 61010190 61010291 61010190 ID=Msa0130600-mRNA-1:exon:20153;Parent=Msa0130600-mRNA-1
chr1_3 exon 61010362 61010508 61010362 ID=Msa0130600-mRNA-1:exon:20154;Parent=Msa0130600-mRNA-1
chr1_3 exon 61011365 61011463 61011365 ID=Msa0130600-mRNA-1:exon:20155;Parent=Msa0130600-mRNA-1
chr1_3 exon 61011565 61011653 61011565 ID=Msa0130600-mRNA-1:exon:20156;Parent=Msa0130600-mRNA-1
chr1_3 exon 61012059 61012185 61012059 ID=Msa0130600-mRNA-1:exon:20157;Parent=Msa0130600-mRNA-1
chr1_3 exon 61012274 61012480 61012274 ID=Msa0130600-mRNA-1:exon:20158;Parent=Msa0130600-mRNA-1
chr1_3 exon 61013012 61014140 61013012 ID=Msa0130600-mRNA-1:exon:20159;Parent=Msa0130600-mRNA-1
chr1_3 five_prime_UTR 61005424 61005619 61005424 ID=Msa0130600-mRNA-1:five_prime_utr;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61005620 61005775 61005620 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61006029 61006192 61006029 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61006568 61006682 61006568 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61006924 61007001 61006924 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61007112 61007180 61007112 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61007308 61007386 61007308 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61007507 61007583 61007507 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61007666 61007761 61007666 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61008030 61008168 61008030 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61008613 61008717 61008613 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61008989 61009041 61008989 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61009118 61009384 61009118 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61009987 61010112 61009987 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61010190 61010291 61010190 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61010362 61010508 61010362 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61011365 61011463 61011365 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61011565 61011653 61011565 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61012059 61012185 61012059 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61012274 61012480 61012274 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 CDS 61013012 61013836 61013012 ID=Msa0130600-mRNA-1:cds;Parent=Msa0130600-mRNA-1
chr1_3 three_prime_UTR 61013837 61014140 61013837 ID=Msa0130600-mRNA-1:three_prime_utr;Parent=Msa0130600-mRNA-1
Gene Sequence

>Msa0130600

ATGACAGACACTACAGATGATATTGCTGAAGAAATCTCGTTCCAGAGCTTCGATGATGATTGTAGGTTGCTTGGTAATCTTCTCAACGACATTCTTCACCGTGAAGTTGGTACCACCTTTGTTGACAAACTCGAAAGAATTCGTGTCCTTGCTCAAAGTGCATGTAATATGAGGCAAGCAGGTATAGTGAACATGGCTGAGTTACTTGAGAAGCAGTTAGCTTCAGAGTTGTCAAAGATGTCATTAGAAGAAGCTTTCACTCTTGCTCGTGCTTTCAGTCATTATCTTACTATGATGGGTATAGCTGAAACTCACCATAGGGTTCGTAAAGGAGGGAATATGGCACAAATTTCAAAATCTTGTGATGATGTGTTTAACCAGCTTGTGCAGGGTGGAGTTTCCCCGGATGATCTTTACAACACAGTCTGCAAACAGGAGGTTGAGATTGTTCTTACAGCTCATCCCACACAAATTAATCGACGAACACTGCAATACAAACACATTCGGATTGCTCATCTTTTGGATTATAACGATCGACCTGATCTTAGCCCTGAAGATCGAGAAATGCTAATTGAGGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAGCTTAGGCGCCAAAAACCCACTCCAGTTGATGAAGCTAGAGCTGGTTTGAATATAGTGGAGCAGTCACTCTGGAAAGCTGTTCCTCATTATTTACGACGTGTCAGCAATGCTTTAAAGAAGCATACTGGAAAGCCACTTCCACTGACTTGCACTCCCATAAAGTTTGGAACTTGGATGGGAGGTGATAGAGATGGAAATCCAAACGTTACCGCAAAGGTCACAAAAGCTGTTTCACTTCTATCTAGATGGATGGCTATTGACCTCTATATTCGGGAAGTGGATAGCCTCAGATTTGAGCTATCTATGAATCGGTGCAGTGATACGTTGTCAAGACTAGCACATGAAATTCTAGAAGAAGCTAAAGACGAGAATCGCCATGAGAGTTGGAATCAGTCCACGAATAGAAGTCAGTCACTTCCAACACAGCTTCCAGCTAGAGCTCATTTACCCTCTTTTGCTGAAAATGGTGAATCGCAGCATCCTAGACTAGACATCCCGGGACCTGATCACAAGGACGGTGGTATTTCTCCAAGTCCAACTACACTCAGAACTGGCAATCCCAGTCTTAAAGTATCAGTAACAAGTTCAGAAAATTCCAATGGTTCTTCATCTTCAATTCCATCTTCTCCCTCTTACAACTCTAGTCAACCGCTTTCTCAGAGGAAATTTACAGAATCCCAGACAGGAAAGTCCAGTTTTCAGAAGCTTTTAGAGCCACAGCTCCCTCAACTTGCTGGAATTGCTCCTTATAGAGTTGTCCTGGGAAATGTAAAGGATAAGCTTGAGAGAAGCCGTAGACGGTTAGAACTTCTTCTTGAGGATGTTGCATGTGACTATGATCCTTTGGATTATTATGAAACAGCTGACCAGCTTTTGGAACCTCTGCTCCTCTGTTATGAATCTCTGCAATCATGTGGGTCTGGGGTGCTAGCTGATGGTCGACTTGCTGATCTCATTCGTAGAGTTGCAACCTTTGGAATGGTTTTAATGAAGCTTGATTTACGCCAGGAATCTGGGAGACATGCTGAAACACTTGATGCAGTTACAACATATTTGGATATGGGTACTTATAGTGAATGGGATGAAGAAAAGAAATTGGACTTCTTAACAAGAGAGCTGAAAGGAAAGAGGCCACTAGTTCCTGTTAGTATGGAGGTTCCTGCTGATGTTAAAGAAGTCTTGGATACATTCCGAATCGCTGCTGAACTAGGGAGCGATTTTCTAGGAGCCTATGTGATATCTATGGCCTCGAGTGCAAGTGATGTCCTTGCAGTAGAGCTTTTACAGAAGGATGCACGGCTTGCTGCTATTGGAGAATTGGGAAGAGCATGTCCTGGTGGAACGTTGCGGGTTGTCCCTCTATTTGAAACCGTGAAGGACCTAAGAGGTGCTGGTTCAGTTATCCGGAAACTTTTATCAATAGACTGGTACCGCGAGCACGTCATTAAGAACCACAATGGACATCAAGAGGTTATGGTTGGATATTCTGATTCTGGTAAAGATGCTGGCCGCTTCACTGCTGCTTGGGAACTTTACAAAGCTCAGGAGGATGTTGTAGCTGCTTGCAATGATTATGGTATTAAAGTTACACTGTTCCATGGCCGTGGAGGCAGTATTGGTCGAGGCGGTGGCCCTACATATCTGGCTATTCAGTCCCAACCACCTGGGTCTGTGATGGGAACACTTCGGTCTACCGAGCAGGGAGAAATGGTAGAGGCTAAGTTTGGGTTGCCACAGATAGCTGTTAGACAACTTGAAATATACACAACTGCTGTATTACTTGCAACCCTTCGTCCACCTCTCCCACCCCGAGATGAAAATTGGCGTAGTCTCATGGAAGAAATCTCAGATATCAGCTGCAAGTGTTACCGCAATGTAGTCTACGAAAATCCAGAGTTCCTTTCTTACTTCCACGAAGCCACGCCTGAAGCAGAGCTCGGCTTCCTGAACATAGGTAGTCGCCCTGCAAGAAGGAAGAACACAAAGGGAATTGGAAACCTTCGTGCTATTCCCTGGGTATTTGCTTGGACTCAAACCAGATTTGTTCTTCCAGCTTGGCTCGGAGTTGGAGCAGGTTTGAAAGGTGCTTGTGAGAAAGGTCATAGGGAAGAACTAAAAGCAATGTACAAAGAATGGCCTTTCTTTCAAAGTACAATAGACCTTATTGAGATGGTGTTAGGGAAAGCAGACACTACTATAGCCAAGTACTATGATGAAGCCCTTGTGTCAGAGGAGAGGCAAGAACTCGGACGTGAGCTAAGAAACGAGCTCCTGACAGCTGAAAAGTTTGTGCTCGTGATTAGTGGGCACGAGAAACTTCAGCAGAATAATAGGAGCTTGAGGAGGTTGGTTGAGAATAGACTTCCATTTCTCAATCCCATGAACCTGTTGCAGGTGGAGATTCTGAAGAGGTTGAGGCGTGATGACGACAACCTTAAACTCAGAGATGCTTTGCTTATCACCGTAAATGGGATTGCTGCTGGGATGAGGAATACCGGTTAA
Protein sequence

>Msa0130600

MTDTTDDIAEEISFQSFDDDCRLLGNLLNDILHREVGTTFVDKLERIRVLAQSACNMRQAGIVNMAELLEKQLASELSKMSLEEAFTLARAFSHYLTMMGIAETHHRVRKGGNMAQISKSCDDVFNQLVQGGVSPDDLYNTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLDYNDRPDLSPEDREMLIEDLVREITSIWQTDELRRQKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCTPIKFGTWMGGDRDGNPNVTAKVTKAVSLLSRWMAIDLYIREVDSLRFELSMNRCSDTLSRLAHEILEEAKDENRHESWNQSTNRSQSLPTQLPARAHLPSFAENGESQHPRLDIPGPDHKDGGISPSPTTLRTGNPSLKVSVTSSENSNGSSSSIPSSPSYNSSQPLSQRKFTESQTGKSSFQKLLEPQLPQLAGIAPYRVVLGNVKDKLERSRRRLELLLEDVACDYDPLDYYETADQLLEPLLLCYESLQSCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAETLDAVTTYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPVSMEVPADVKEVLDTFRIAAELGSDFLGAYVISMASSASDVLAVELLQKDARLAAIGELGRACPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYREHVIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNDYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVEAKFGLPQIAVRQLEIYTTAVLLATLRPPLPPRDENWRSLMEEISDISCKCYRNVVYENPEFLSYFHEATPEAELGFLNIGSRPARRKNTKGIGNLRAIPWVFAWTQTRFVLPAWLGVGAGLKGACEKGHREELKAMYKEWPFFQSTIDLIEMVLGKADTTIAKYYDEALVSEERQELGRELRNELLTAEKFVLVISGHEKLQQNNRSLRRLVENRLPFLNPMNLLQVEILKRLRRDDDNLKLRDALLITVNGIAAGMRNTG*