AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036690 MtrunA17_Chr1g0198601 97.090 378 11 0 1 378 1 378 0.0 764
Msa0036690 MtrunA17_Chr5g0422621 57.368 380 126 14 1 374 10 359 9.88e-126 366
Msa0036690 MtrunA17_Chr4g0062921 35.404 322 144 7 2 294 29 315 1.54e-48 169
Msa0036690 MtrunA17_Chr4g0045361 34.930 355 146 11 10 309 44 368 8.96e-43 154
Msa0036690 MtrunA17_Chr5g0402631 33.636 330 142 12 2 324 56 315 1.81e-33 127
Msa0036690 MtrunA17_Chr2g0291021 56.061 66 29 0 211 276 49 114 1.18e-15 77.4
Msa0036690 MtrunA17_Chr2g0294911 37.008 127 57 4 210 323 210 326 2.42e-15 77.4
Msa0036690 MtrunA17_Chr4g0067981 53.521 71 32 1 210 280 214 283 6.83e-15 76.3
Msa0036690 MtrunA17_Chr2g0304841 38.462 117 63 4 209 323 211 320 7.32e-15 76.3
Msa0036690 MtrunA17_Chr7g0254981 55.385 65 29 0 211 275 50 114 1.18e-14 73.6
Msa0036690 MtrunA17_Chr4g0074411 53.968 63 28 1 209 271 199 260 1.78e-14 75.1
Msa0036690 MtrunA17_Chr1g0161431 48.611 72 36 1 200 271 189 259 3.44e-14 73.9
Msa0036690 MtrunA17_Chr3g0137101 45.679 81 42 2 204 284 191 269 4.23e-14 73.9
Msa0036690 MtrunA17_Chr5g0400241 51.515 66 31 1 204 269 304 368 7.25e-14 72.8
Msa0036690 MtrunA17_Chr5g0417521 61.818 55 21 0 211 265 15 69 9.76e-14 71.6
Msa0036690 MtrunA17_Chr4g0074401 50.000 66 32 1 206 271 198 262 1.04e-13 72.4
Msa0036690 MtrunA17_Chr7g0274471 54.839 62 28 0 211 272 218 279 2.10e-13 71.2
Msa0036690 MtrunA17_Chr4g0054981 41.489 94 51 2 178 268 274 366 2.25e-13 71.6
Msa0036690 MtrunA17_Chr1g0149841 52.381 63 29 1 209 271 189 250 2.44e-13 71.2
Msa0036690 MtrunA17_Chr7g0261911 43.902 82 44 1 211 292 262 341 2.72e-13 70.9
Msa0036690 MtrunA17_Chr2g0290991 60.000 55 22 0 211 265 39 93 6.15e-13 68.9
Msa0036690 MtrunA17_Chr8g0356501 54.545 66 29 1 211 276 37 101 6.47e-13 69.3
Msa0036690 MtrunA17_Chr1g0190301 50.794 63 31 0 211 273 175 237 7.35e-13 69.3
Msa0036690 MtrunA17_Chr4g0031961 43.243 74 41 1 207 280 127 199 8.68e-13 68.6
Msa0036690 MtrunA17_Chr2g0310011 60.000 55 22 0 211 265 35 89 1.14e-12 68.6
Msa0036690 MtrunA17_Chr6g0461641 48.529 68 35 0 211 278 42 109 1.17e-12 68.9
Msa0036690 MtrunA17_Chr4g0042451 58.182 55 23 0 211 265 17 71 1.24e-12 68.2
Msa0036690 MtrunA17_Chr2g0321461 56.364 55 24 0 211 265 45 99 1.32e-12 68.6
Msa0036690 MtrunA17_Chr1g0175091 51.667 60 29 0 211 270 258 317 1.36e-12 68.6
Msa0036690 MtrunA17_Chr7g0255711 40.244 82 45 2 188 269 71 148 1.38e-12 67.8
Msa0036690 MtrunA17_Chr1g0175081 39.744 78 32 1 188 265 14 76 1.44e-12 63.5
Msa0036690 MtrunA17_Chr1g0149831 45.588 68 33 1 209 276 126 189 1.50e-12 66.6
Msa0036690 MtrunA17_Chr7g0275891 42.857 84 36 2 209 280 189 272 1.73e-12 67.8
Msa0036690 MtrunA17_Chr4g0040481 37.895 95 46 2 209 303 156 237 2.83e-12 67.8
Msa0036690 MtrunA17_Chr4g0009901 48.571 70 35 1 200 269 157 225 3.10e-12 66.6
Msa0036690 MtrunA17_Chr1g0197171 58.182 55 23 0 211 265 44 98 3.82e-12 66.2
Msa0036690 MtrunA17_Chr2g0324891 45.070 71 38 1 209 279 159 228 5.67e-12 66.6
Msa0036690 MtrunA17_Chr8g0376881 46.479 71 37 1 210 280 208 277 5.70e-12 67.0
Msa0036690 MtrunA17_Chr5g0409731 50.820 61 28 1 211 269 25 85 1.84e-11 64.3
Msa0036690 MtrunA17_Chr4g0009981 42.857 77 43 1 210 286 115 190 2.23e-11 63.5
Msa0036690 MtrunA17_Chr3g0123131 40.698 86 45 2 200 280 183 267 2.57e-11 65.1
Msa0036690 MtrunA17_Chr6g0473731 43.243 74 41 1 210 283 94 166 3.05e-11 64.7
Msa0036690 MtrunA17_Chr7g0258551 46.269 67 36 0 211 277 212 278 3.87e-11 63.9
Msa0036690 MtrunA17_Chr2g0288601 55.102 49 22 0 213 261 73 121 4.74e-11 60.1
Msa0036690 MtrunA17_Chr4g0009851 40.506 79 46 1 208 286 166 243 7.36e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036690 AT1G68670.1 47.929 338 126 12 10 326 16 324 1.61e-79 248
Msa0036690 AT1G25550.1 46.386 332 125 11 10 328 20 311 1.69e-77 243
Msa0036690 AT3G25790.1 43.869 367 166 8 10 372 20 350 4.72e-75 237
Msa0036690 AT1G13300.1 43.207 368 148 12 11 368 20 336 5.72e-71 226
Msa0036690 AT1G25550.2 49.231 260 104 8 10 261 20 259 1.16e-66 213
Msa0036690 AT3G25790.2 46.457 254 109 4 9 261 19 246 1.74e-56 186
Msa0036690 AT2G03500.1 35.802 324 126 9 8 294 36 314 1.83e-48 170
Msa0036690 AT4G37180.1 33.935 277 109 8 11 269 48 268 3.05e-33 127
Msa0036690 AT4G37180.2 33.574 277 117 8 11 269 48 275 1.40e-30 120
Msa0036690 AT1G49560.1 32.542 295 132 9 10 293 30 268 4.60e-30 118
Msa0036690 AT4G37180.3 33.086 269 106 8 11 261 48 260 1.39e-28 113
Msa0036690 AT1G49560.2 31.939 263 118 8 10 261 30 242 3.69e-23 97.8
Msa0036690 AT2G01060.1 57.812 64 27 0 211 274 15 78 2.07e-15 76.3
Msa0036690 AT3G16857.3 35.252 139 79 3 199 336 155 283 8.52e-15 76.3
Msa0036690 AT3G16857.2 34.752 141 81 3 199 338 225 355 9.86e-15 76.3
Msa0036690 AT3G16857.1 34.752 141 81 3 199 338 225 355 1.03e-14 76.3
Msa0036690 AT5G58080.1 50.000 66 32 1 204 269 187 251 4.19e-14 74.3
Msa0036690 AT3G04030.1 53.846 65 30 0 211 275 45 109 9.04e-14 72.4
Msa0036690 AT3G04030.3 53.846 65 30 0 211 275 45 109 1.06e-13 72.4
Msa0036690 AT2G25180.1 31.902 163 94 5 209 356 193 353 1.14e-13 72.8
Msa0036690 AT5G05090.1 45.570 79 41 2 192 269 61 138 1.77e-13 70.5
Msa0036690 AT5G06800.3 53.226 62 29 0 211 272 192 253 2.79e-13 70.1
Msa0036690 AT5G18240.2 58.182 55 23 0 211 265 45 99 3.68e-13 70.9
Msa0036690 AT5G18240.3 58.182 55 23 0 211 265 45 99 3.68e-13 70.9
Msa0036690 AT5G18240.5 58.182 55 23 0 211 265 45 99 4.06e-13 70.5
Msa0036690 AT5G18240.1 58.182 55 23 0 211 265 45 99 4.17e-13 70.5
Msa0036690 AT5G18240.4 58.182 55 23 0 211 265 45 99 4.17e-13 70.5
Msa0036690 AT2G01760.3 44.156 77 42 1 210 286 134 209 5.02e-13 69.7
Msa0036690 AT5G44190.2 43.750 80 44 1 200 279 136 214 6.05e-13 69.7
Msa0036690 AT5G44190.1 43.750 80 44 1 200 279 136 214 6.93e-13 69.7
Msa0036690 AT2G01760.2 46.575 73 38 1 210 282 227 298 6.94e-13 70.1
Msa0036690 AT2G01760.1 44.156 77 42 1 210 286 199 274 7.52e-13 69.7
Msa0036690 AT5G06800.1 53.226 62 29 0 211 272 192 253 1.00e-12 69.3
Msa0036690 AT5G06800.2 53.226 62 29 0 211 272 192 253 1.05e-12 69.3
Msa0036690 AT3G10760.1 44.444 81 43 2 190 269 83 162 1.06e-12 68.9
Msa0036690 AT2G40970.1 45.070 71 38 1 199 269 93 162 1.10e-12 67.8
Msa0036690 AT3G46640.3 33.113 151 92 4 134 276 59 208 1.47e-12 68.6
Msa0036690 AT3G46640.2 46.269 67 35 1 210 276 143 208 1.51e-12 68.2
Msa0036690 AT3G46640.1 46.269 67 35 1 210 276 143 208 1.51e-12 68.2
Msa0036690 AT5G45580.2 44.595 74 41 0 211 284 23 96 1.52e-12 67.8
Msa0036690 AT1G79430.2 60.000 55 22 0 211 265 34 88 1.58e-12 68.6
Msa0036690 AT5G45580.1 44.595 74 41 0 211 284 7 80 1.59e-12 67.4
Msa0036690 AT3G04450.3 51.667 60 29 0 211 270 238 297 1.67e-12 68.2
Msa0036690 AT5G59570.2 38.318 107 64 2 163 269 94 198 2.20e-12 67.8
Msa0036690 AT5G59570.1 38.318 107 64 2 163 269 94 198 2.20e-12 67.8
Msa0036690 AT3G24120.1 58.182 55 23 0 211 265 41 95 2.30e-12 67.4
Msa0036690 AT5G29000.4 49.206 63 32 0 211 273 231 293 2.47e-12 67.4
Msa0036690 AT4G13640.2 58.182 55 23 0 211 265 37 91 2.60e-12 67.4
Msa0036690 AT3G24120.2 58.182 55 23 0 211 265 41 95 2.64e-12 67.4
Msa0036690 AT4G13640.1 58.182 55 23 0 211 265 37 91 2.73e-12 67.4
Msa0036690 AT3G13040.3 52.459 61 29 0 210 270 240 300 3.02e-12 68.2
Msa0036690 AT3G13040.1 52.459 61 29 0 210 270 240 300 3.02e-12 68.2
Msa0036690 AT3G13040.2 52.459 61 29 0 210 270 240 300 3.02e-12 68.2
Msa0036690 AT3G04450.1 51.667 60 29 0 211 270 238 297 3.21e-12 68.2
Msa0036690 AT3G04450.4 51.667 60 29 0 211 270 198 257 3.71e-12 67.8
Msa0036690 AT3G04450.2 51.667 60 29 0 211 270 198 257 3.71e-12 67.8
Msa0036690 AT2G20570.1 47.945 73 37 1 207 279 149 220 4.22e-12 67.8
Msa0036690 AT3G04030.2 52.308 65 30 1 211 275 45 108 5.80e-12 67.0
Msa0036690 AT5G29000.2 49.206 63 32 0 211 273 231 293 5.83e-12 67.0
Msa0036690 AT5G29000.1 49.206 63 32 0 211 273 188 250 6.16e-12 67.0
Msa0036690 AT5G29000.3 49.206 63 32 0 211 273 188 250 6.16e-12 67.0
Msa0036690 AT4G28610.1 51.667 60 29 0 211 270 225 284 6.71e-12 67.0
Msa0036690 AT3G12730.1 56.364 55 24 0 211 265 23 77 7.60e-12 65.1
Msa0036690 AT2G42660.1 52.632 57 27 0 216 272 55 111 1.06e-11 65.1
Msa0036690 AT2G38300.1 51.923 52 25 0 213 264 56 107 1.83e-11 65.1
Msa0036690 AT4G31920.1 42.105 76 43 1 204 279 176 250 2.34e-11 65.5
Msa0036690 AT2G06020.1 50.909 55 27 0 211 265 86 140 2.57e-11 64.3
Msa0036690 AT1G49190.1 36.486 74 44 1 196 266 200 273 5.86e-11 63.9
Msa0036690 AT4G04605.1 51.923 52 25 0 213 264 16 67 7.82e-11 62.0

Find 92 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAACTCTATCTTCTTTA+TGG 0.063110 1_1:+65353752 None:intergenic
CACAATGCAGCGTTTCAAAA+TGG 0.179894 1_1:-65354490 Msa0036690:exon
ACAAAAGTGGTTGCACCTTC+TGG 0.247597 1_1:-65352936 Msa0036690:CDS
CATATCTACAAACCTGTAAA+TGG 0.279375 1_1:+65353343 None:intergenic
TGAAGTCAAAAGCCATTTAC+AGG 0.284068 1_1:-65353355 Msa0036690:intron
AACGAAAGAGGAAGTTCTTT+AGG 0.297245 1_1:+65354411 None:intergenic
ATATCGATGAAGAAAGAATA+TGG 0.311789 1_1:+65354596 None:intergenic
GATGTCTCCAACATTGTTAC+TGG 0.321828 1_1:+65353648 None:intergenic
ATTACCTCTCTGATTTGCTT+TGG 0.356836 1_1:+65353402 None:intergenic
CTTTCGTTATTTGTTGAACT+TGG 0.382926 1_1:+65353062 None:intergenic
AATAACATTATACAACAAAA+AGG 0.387476 1_1:+65352653 None:intergenic
GGCTTAGATCTGTTCAGTTA+TGG 0.389861 1_1:-65354011 Msa0036690:CDS
CCCCACCATACTCTTGTTGT+TGG 0.395076 1_1:+65352988 None:intergenic
GGAATAAACTCTTCTAAAAC+AGG 0.409660 1_1:+65354153 None:intergenic
TTTGTCCAACAACAAGAGTA+TGG 0.414336 1_1:-65352993 Msa0036690:CDS
ATTATTACCTCTTCAGATGA+AGG 0.417768 1_1:+65353979 None:intergenic
GACGTTCTTGTTCTAATGCT+TGG 0.420567 1_1:+65354451 None:intergenic
ACAATGCAGCGTTTCAAAAT+GGG 0.423030 1_1:-65354489 Msa0036690:CDS
GTAGCTTCATCAACAACAAC+AGG 0.429695 1_1:-65352966 Msa0036690:CDS
TGTGGAAGCAAGAGAGAGAG+TGG 0.430560 1_1:+65354571 None:intergenic
TGCTCAAACCTCTTGAACTC+TGG 0.432408 1_1:+65352864 None:intergenic
GCAGCGACGGTGCTGGTCGC+AGG 0.434166 1_1:-65353596 Msa0036690:CDS
GTTTATTCCAATTAAGAAAA+GGG 0.437351 1_1:-65354139 Msa0036690:CDS
GTTGCACAAGCGATTCTTGA+AGG 0.440339 1_1:-65353572 Msa0036690:CDS
GAATGAAGGAGAAACAAAGA+AGG 0.444900 1_1:+65354687 None:intergenic
AGTTTATTCCAATTAAGAAA+AGG 0.446516 1_1:-65354140 Msa0036690:CDS
ACTCTATCTTCTTTATGGAA+TGG 0.449526 1_1:+65353757 None:intergenic
GCTTGTCGACAACAATTGTC+TGG 0.459321 1_1:-65354243 Msa0036690:CDS
CATCAAAAGAGACGAGAAAG+AGG 0.461312 1_1:-65353629 Msa0036690:CDS
TTGAAGGCGCTTCAGCAACT+TGG 0.469776 1_1:-65353556 Msa0036690:CDS
GTGGAAGCAAGAGAGAGAGT+GGG 0.472009 1_1:+65354572 None:intergenic
GAGACAGTTCGCGAAGAACT+CGG 0.475399 1_1:+65354716 None:intergenic
TATCGATGAAGAAAGAATAT+GGG 0.478424 1_1:+65354597 None:intergenic
AGAGAGGTAATGAATGTTGA+TGG 0.478733 1_1:-65353390 Msa0036690:CDS
GCATTCAATCTCAGATGAAA+GGG 0.480171 1_1:-65352844 Msa0036690:CDS
AGGTGCTGCTGTTTGTGAAT+TGG 0.480961 1_1:+65353037 None:intergenic
CTCTCTGATTTGCTTTGGTG+TGG 0.488332 1_1:+65353407 None:intergenic
GTGTTGGAATTGAAGAGAAA+TGG 0.488831 1_1:-65353802 Msa0036690:CDS
ACAACTGAGTATAATTTGAA+TGG 0.489356 1_1:-65354216 Msa0036690:CDS
TCAATAACCAGGGGAAGTAT+TGG 0.491273 1_1:+65352755 None:intergenic
TTGGTCTTCTAGTATGCAAC+CGG 0.498211 1_1:+65353081 None:intergenic
ACAAGTGAATTGTTAAGTAA+AGG 0.498649 1_1:-65353724 Msa0036690:CDS
AGACAGTTCGCGAAGAACTC+GGG 0.499976 1_1:+65354717 None:intergenic
ATGTTGCCTACAAGGACAAA+AGG 0.503411 1_1:+65353017 None:intergenic
AAGGCGCTTCAGCAACTTGG+TGG 0.504237 1_1:-65353553 Msa0036690:CDS
ACTTGAGGATGTGTGGCTAC+TGG 0.518302 1_1:+65352903 None:intergenic
TTCTTAATTGTAGCAACTTG+AGG 0.518381 1_1:+65352888 None:intergenic
AGCATTCAATCTCAGATGAA+AGG 0.522044 1_1:-65352845 Msa0036690:CDS
AAGAGAAATGGAAGTGGTGG+TGG 0.523432 1_1:-65353790 Msa0036690:CDS
TGGAAGCAAGAGAGAGAGTG+GGG 0.523886 1_1:+65354573 None:intergenic
TGTGTAGAGGATGAAGATGT+AGG 0.529070 1_1:+65352786 None:intergenic
AATGAAGGAGAAACAAAGAA+GGG 0.534302 1_1:+65354688 None:intergenic
TTAAGAAACCAGAGTTCAAG+AGG 0.534779 1_1:-65352872 Msa0036690:CDS
TCCAACAACAAGAGTATGGT+GGG 0.538170 1_1:-65352989 Msa0036690:CDS
AGAGAAAGCAGCGACGGTGC+TGG 0.540249 1_1:-65353603 Msa0036690:CDS
AGAACTCACGGCAGCTACAC+CGG 0.545612 1_1:+65353687 None:intergenic
TTTGAAACGCTGCATTGTGA+AGG 0.557389 1_1:+65354494 None:intergenic
GTAACGAGTTCTAACGAAAG+AGG 0.565892 1_1:+65354399 None:intergenic
GGCAGCTACACCGGTCGAAG+AGG 0.574491 1_1:+65353696 None:intergenic
AAAATTAAAACTCAATAACC+AGG 0.575545 1_1:+65352744 None:intergenic
ATAATCGATTCTGAAGAGAA+TGG 0.575641 1_1:+65354543 None:intergenic
ATAATAAGAAGAAATCTGAC+TGG 0.576819 1_1:-65354032 Msa0036690:CDS
AGGAAAAGAGAAAGCAGCGA+CGG 0.577313 1_1:-65353609 Msa0036690:CDS
ACTACTACCAATACTTCCCC+TGG 0.577357 1_1:-65352762 Msa0036690:CDS
TAAGAAAACAGTGCCTGTGT+TGG 0.581215 1_1:-65353818 Msa0036690:CDS
TTCAGATCCTTCATCTGAAG+AGG 0.584122 1_1:-65353986 Msa0036690:intron
AAAATGGTTTATGTAAGAAG+AGG 0.585452 1_1:+65354519 None:intergenic
AAAGGACAACCCTCTTCGAC+CGG 0.587220 1_1:-65353706 Msa0036690:CDS
AAATTAAAACTCAATAACCA+GGG 0.590216 1_1:+65352745 None:intergenic
GCAGCTACACCGGTCGAAGA+GGG 0.597437 1_1:+65353697 None:intergenic
AATCACATACAACATAAATG+AGG 0.600136 1_1:+65352629 None:intergenic
TTTCTCTTCAATTCCAACAC+AGG 0.600323 1_1:+65353805 None:intergenic
CTTGTTCTAAAGAGATAACA+TGG 0.602698 1_1:+65352529 None:intergenic
AACAGGGGAAATGACAAAAG+TGG 0.604173 1_1:-65352949 Msa0036690:CDS
ATTGGTAGTAGTATGTGTAG+AGG 0.610237 1_1:+65352773 None:intergenic
AATGTCACCAGTAACAATGT+TGG 0.610482 1_1:-65353655 Msa0036690:CDS
GTCCAACAACAAGAGTATGG+TGG 0.618792 1_1:-65352990 Msa0036690:CDS
GAACAGACAACATCAACAGA+TGG 0.623810 1_1:-65354177 Msa0036690:CDS
ATTAGCCGCATTAGAACTCA+CGG 0.629576 1_1:+65353675 None:intergenic
TCGTTAGAACTCGTTACACA+AGG 0.638093 1_1:-65354393 Msa0036690:intron
GAAAGGGGTAATAACAGTGA+AGG 0.640994 1_1:-65352828 Msa0036690:CDS
TTGAAGAGAAATGGAAGTGG+TGG 0.651388 1_1:-65353793 Msa0036690:CDS
CATTCAATCTCAGATGAAAG+GGG 0.655574 1_1:-65352843 Msa0036690:CDS
ACTGGTGCATAGATTCCAGA+AGG 0.656305 1_1:+65352921 None:intergenic
AGCTGCCGTGAGTTCTAATG+CGG 0.671481 1_1:-65353680 Msa0036690:CDS
TGTAGCAACTTGAGGATGTG+TGG 0.683531 1_1:+65352896 None:intergenic
GAATTGAAGAGAAATGGAAG+TGG 0.689165 1_1:-65353796 Msa0036690:CDS
TAGCTTCATCAACAACAACA+GGG 0.693117 1_1:-65352965 Msa0036690:CDS
AATTAAAACTCAATAACCAG+GGG 0.700665 1_1:+65352746 None:intergenic
CCAACAACAAGAGTATGGTG+GGG 0.702776 1_1:-65352988 Msa0036690:CDS
AGCTTCATCAACAACAACAG+GGG 0.709783 1_1:-65352964 Msa0036690:CDS
CACACCAAAGCAAATCAGAG+AGG 0.720773 1_1:-65353406 Msa0036690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTATTTTTTTTTTATCT+GGG - chr1_1:65352933-65352952 Msa0036690:CDS 10.0%
!!! AAAATAATTTTGGATTTTTT+TGG - chr1_1:65352972-65352991 Msa0036690:CDS 10.0%
!!! AAAAAAATTGATTTTAATTG+AGG + chr1_1:65354132-65354151 None:intergenic 10.0%
!!! TTTGTATTTTTTTTTTATCT+GGG - chr1_1:65352933-65352952 Msa0036690:CDS 10.0%
!!! AAAATAATTTTGGATTTTTT+TGG - chr1_1:65352972-65352991 Msa0036690:CDS 10.0%
!!! AAAAAAATTGATTTTAATTG+AGG + chr1_1:65354132-65354151 None:intergenic 10.0%
!! GCATATAAAAAAAACAAAAA+GGG + chr1_1:65352900-65352919 None:intergenic 15.0%
!! AGCATATAAAAAAAACAAAA+AGG + chr1_1:65352901-65352920 None:intergenic 15.0%
!!! GTTTGTATTTTTTTTTTATC+TGG - chr1_1:65352932-65352951 Msa0036690:CDS 15.0%
!! AATAACATTATACAACAAAA+AGG + chr1_1:65354607-65354626 None:intergenic 15.0%
!! GCATATAAAAAAAACAAAAA+GGG + chr1_1:65352900-65352919 None:intergenic 15.0%
!! AGCATATAAAAAAAACAAAA+AGG + chr1_1:65352901-65352920 None:intergenic 15.0%
!!! GTTTGTATTTTTTTTTTATC+TGG - chr1_1:65352932-65352951 Msa0036690:CDS 15.0%
!! AATAACATTATACAACAAAA+AGG + chr1_1:65354607-65354626 None:intergenic 15.0%
!! AAAAGAAAGAAAAAGAATGA+AGG + chr1_1:65352587-65352606 None:intergenic 20.0%
!! AGTTTATTCCAATTAAGAAA+AGG - chr1_1:65353117-65353136 Msa0036690:intron 20.0%
!! GTTTATTCCAATTAAGAAAA+GGG - chr1_1:65353118-65353137 Msa0036690:intron 20.0%
!!! TTTACTTTTTGTTAAACTGA+AGG - chr1_1:65353349-65353368 Msa0036690:intron 20.0%
!!! TTACTTTTTGTTAAACTGAA+GGG - chr1_1:65353350-65353369 Msa0036690:intron 20.0%
!!! TTTTTCACAAAAACAAAACA+AGG + chr1_1:65353403-65353422 None:intergenic 20.0%
!!! GTTTTTGTGAAAAATTGTTT+AGG - chr1_1:65353409-65353428 Msa0036690:CDS 20.0%
!! AAATTAAAACTCAATAACCA+GGG + chr1_1:65354515-65354534 None:intergenic 20.0%
!! AAAATTAAAACTCAATAACC+AGG + chr1_1:65354516-65354535 None:intergenic 20.0%
!! AAAAGAAAGAAAAAGAATGA+AGG + chr1_1:65352587-65352606 None:intergenic 20.0%
!! AGTTTATTCCAATTAAGAAA+AGG - chr1_1:65353117-65353136 Msa0036690:intron 20.0%
!! GTTTATTCCAATTAAGAAAA+GGG - chr1_1:65353118-65353137 Msa0036690:intron 20.0%
!!! TTTACTTTTTGTTAAACTGA+AGG - chr1_1:65353349-65353368 Msa0036690:intron 20.0%
!!! TTACTTTTTGTTAAACTGAA+GGG - chr1_1:65353350-65353369 Msa0036690:intron 20.0%
!!! TTTTTCACAAAAACAAAACA+AGG + chr1_1:65353403-65353422 None:intergenic 20.0%
!!! GTTTTTGTGAAAAATTGTTT+AGG - chr1_1:65353409-65353428 Msa0036690:CDS 20.0%
!! AAATTAAAACTCAATAACCA+GGG + chr1_1:65354515-65354534 None:intergenic 20.0%
!! AAAATTAAAACTCAATAACC+AGG + chr1_1:65354516-65354535 None:intergenic 20.0%
! TCTGAAGAAGAATCAAAAAT+TGG + chr1_1:65352639-65352658 None:intergenic 25.0%
! TATCGATGAAGAAAGAATAT+GGG + chr1_1:65352663-65352682 None:intergenic 25.0%
! ATATCGATGAAGAAAGAATA+TGG + chr1_1:65352664-65352683 None:intergenic 25.0%
! AAAATGGTTTATGTAAGAAG+AGG + chr1_1:65352741-65352760 None:intergenic 25.0%
! ACAACTGAGTATAATTTGAA+TGG - chr1_1:65353041-65353060 Msa0036690:CDS 25.0%
! ATAATAAGAAGAAATCTGAC+TGG - chr1_1:65353225-65353244 Msa0036690:intron 25.0%
! TGTTAACTCTATCTTCTTTA+TGG + chr1_1:65353508-65353527 None:intergenic 25.0%
! ACAAGTGAATTGTTAAGTAA+AGG - chr1_1:65353533-65353552 Msa0036690:intron 25.0%
! AAATTGACAACAAAAGAGTT+GGG + chr1_1:65353948-65353967 None:intergenic 25.0%
! AAAATTGACAACAAAAGAGT+TGG + chr1_1:65353949-65353968 None:intergenic 25.0%
! AATTAAAACTCAATAACCAG+GGG + chr1_1:65354514-65354533 None:intergenic 25.0%
! AATCACATACAACATAAATG+AGG + chr1_1:65354631-65354650 None:intergenic 25.0%
! TCTGAAGAAGAATCAAAAAT+TGG + chr1_1:65352639-65352658 None:intergenic 25.0%
! TATCGATGAAGAAAGAATAT+GGG + chr1_1:65352663-65352682 None:intergenic 25.0%
! ATATCGATGAAGAAAGAATA+TGG + chr1_1:65352664-65352683 None:intergenic 25.0%
! AAAATGGTTTATGTAAGAAG+AGG + chr1_1:65352741-65352760 None:intergenic 25.0%
! ACAACTGAGTATAATTTGAA+TGG - chr1_1:65353041-65353060 Msa0036690:CDS 25.0%
! ATAATAAGAAGAAATCTGAC+TGG - chr1_1:65353225-65353244 Msa0036690:intron 25.0%
! TGTTAACTCTATCTTCTTTA+TGG + chr1_1:65353508-65353527 None:intergenic 25.0%
! ACAAGTGAATTGTTAAGTAA+AGG - chr1_1:65353533-65353552 Msa0036690:intron 25.0%
! AAATTGACAACAAAAGAGTT+GGG + chr1_1:65353948-65353967 None:intergenic 25.0%
! AAAATTGACAACAAAAGAGT+TGG + chr1_1:65353949-65353968 None:intergenic 25.0%
! AATTAAAACTCAATAACCAG+GGG + chr1_1:65354514-65354533 None:intergenic 25.0%
! AATCACATACAACATAAATG+AGG + chr1_1:65354631-65354650 None:intergenic 25.0%
AATGAAGGAGAAACAAAGAA+GGG + chr1_1:65352572-65352591 None:intergenic 30.0%
! ATAATCGATTCTGAAGAGAA+TGG + chr1_1:65352717-65352736 None:intergenic 30.0%
!! GGAATAAACTCTTCTAAAAC+AGG + chr1_1:65353107-65353126 None:intergenic 30.0%
ATTATTACCTCTTCAGATGA+AGG + chr1_1:65353281-65353300 None:intergenic 30.0%
ACTCTATCTTCTTTATGGAA+TGG + chr1_1:65353503-65353522 None:intergenic 30.0%
!!! GTTTTTTGCTTCTGTTCTAT+AGG - chr1_1:65353825-65353844 Msa0036690:CDS 30.0%
!!! TTTTGACTTCATCATTTGTG+AGG + chr1_1:65353893-65353912 None:intergenic 30.0%
CATATCTACAAACCTGTAAA+TGG + chr1_1:65353917-65353936 None:intergenic 30.0%
GAAATCCTATGCAATTGAAA+GGG + chr1_1:65354053-65354072 None:intergenic 30.0%
TGAAATCCTATGCAATTGAA+AGG + chr1_1:65354054-65354073 None:intergenic 30.0%
! CTTTCGTTATTTGTTGAACT+TGG + chr1_1:65354198-65354217 None:intergenic 30.0%
TTCTTAATTGTAGCAACTTG+AGG + chr1_1:65354372-65354391 None:intergenic 30.0%
!!! TAAGTCACACCTTTTTTAGA+TGG - chr1_1:65354699-65354718 Msa0036690:five_prime_UTR 30.0%
TGGTAGTATCCATCTAAAAA+AGG + chr1_1:65354711-65354730 None:intergenic 30.0%
AATGAAGGAGAAACAAAGAA+GGG + chr1_1:65352572-65352591 None:intergenic 30.0%
! ATAATCGATTCTGAAGAGAA+TGG + chr1_1:65352717-65352736 None:intergenic 30.0%
!! GGAATAAACTCTTCTAAAAC+AGG + chr1_1:65353107-65353126 None:intergenic 30.0%
ATTATTACCTCTTCAGATGA+AGG + chr1_1:65353281-65353300 None:intergenic 30.0%
ACTCTATCTTCTTTATGGAA+TGG + chr1_1:65353503-65353522 None:intergenic 30.0%
!!! GTTTTTTGCTTCTGTTCTAT+AGG - chr1_1:65353825-65353844 Msa0036690:CDS 30.0%
!!! TTTTGACTTCATCATTTGTG+AGG + chr1_1:65353893-65353912 None:intergenic 30.0%
CATATCTACAAACCTGTAAA+TGG + chr1_1:65353917-65353936 None:intergenic 30.0%
GAAATCCTATGCAATTGAAA+GGG + chr1_1:65354053-65354072 None:intergenic 30.0%
TGAAATCCTATGCAATTGAA+AGG + chr1_1:65354054-65354073 None:intergenic 30.0%
! CTTTCGTTATTTGTTGAACT+TGG + chr1_1:65354198-65354217 None:intergenic 30.0%
TTCTTAATTGTAGCAACTTG+AGG + chr1_1:65354372-65354391 None:intergenic 30.0%
!!! TAAGTCACACCTTTTTTAGA+TGG - chr1_1:65354699-65354718 Msa0036690:five_prime_UTR 30.0%
TGGTAGTATCCATCTAAAAA+AGG + chr1_1:65354711-65354730 None:intergenic 30.0%
GAATGAAGGAGAAACAAAGA+AGG + chr1_1:65352573-65352592 None:intergenic 35.0%
ACAATGCAGCGTTTCAAAAT+GGG - chr1_1:65352768-65352787 Msa0036690:CDS 35.0%
AACGAAAGAGGAAGTTCTTT+AGG + chr1_1:65352849-65352868 None:intergenic 35.0%
! GAAGAAGCCCTTTTCTTAAT+TGG + chr1_1:65353128-65353147 None:intergenic 35.0%
TTTCTCTTCAATTCCAACAC+AGG + chr1_1:65353455-65353474 None:intergenic 35.0%
GTGTTGGAATTGAAGAGAAA+TGG - chr1_1:65353455-65353474 Msa0036690:intron 35.0%
GAATTGAAGAGAAATGGAAG+TGG - chr1_1:65353461-65353480 Msa0036690:intron 35.0%
AATGTCACCAGTAACAATGT+TGG - chr1_1:65353602-65353621 Msa0036690:CDS 35.0%
!! ATTACCTCTCTGATTTGCTT+TGG + chr1_1:65353858-65353877 None:intergenic 35.0%
AGAGAGGTAATGAATGTTGA+TGG - chr1_1:65353867-65353886 Msa0036690:intron 35.0%
TGAAGTCAAAAGCCATTTAC+AGG - chr1_1:65353902-65353921 Msa0036690:intron 35.0%
TTAGTCCCTTTCAATTGCAT+AGG - chr1_1:65354045-65354064 Msa0036690:CDS 35.0%
! TCTGTTTTGCACAGAAATAC+CGG - chr1_1:65354157-65354176 Msa0036690:CDS 35.0%
TTTGTCCAACAACAAGAGTA+TGG - chr1_1:65354264-65354283 Msa0036690:intron 35.0%
TAGCTTCATCAACAACAACA+GGG - chr1_1:65354292-65354311 Msa0036690:intron 35.0%
TTAAGAAACCAGAGTTCAAG+AGG - chr1_1:65354385-65354404 Msa0036690:intron 35.0%
AGCATTCAATCTCAGATGAA+AGG - chr1_1:65354412-65354431 Msa0036690:CDS 35.0%
GCATTCAATCTCAGATGAAA+GGG - chr1_1:65354413-65354432 Msa0036690:CDS 35.0%
CATTCAATCTCAGATGAAAG+GGG - chr1_1:65354414-65354433 Msa0036690:CDS 35.0%
! ATTGGTAGTAGTATGTGTAG+AGG + chr1_1:65354487-65354506 None:intergenic 35.0%
GAATGAAGGAGAAACAAAGA+AGG + chr1_1:65352573-65352592 None:intergenic 35.0%
ACAATGCAGCGTTTCAAAAT+GGG - chr1_1:65352768-65352787 Msa0036690:CDS 35.0%
AACGAAAGAGGAAGTTCTTT+AGG + chr1_1:65352849-65352868 None:intergenic 35.0%
! GAAGAAGCCCTTTTCTTAAT+TGG + chr1_1:65353128-65353147 None:intergenic 35.0%
TTTCTCTTCAATTCCAACAC+AGG + chr1_1:65353455-65353474 None:intergenic 35.0%
GTGTTGGAATTGAAGAGAAA+TGG - chr1_1:65353455-65353474 Msa0036690:intron 35.0%
GAATTGAAGAGAAATGGAAG+TGG - chr1_1:65353461-65353480 Msa0036690:intron 35.0%
AATGTCACCAGTAACAATGT+TGG - chr1_1:65353602-65353621 Msa0036690:CDS 35.0%
!! ATTACCTCTCTGATTTGCTT+TGG + chr1_1:65353858-65353877 None:intergenic 35.0%
AGAGAGGTAATGAATGTTGA+TGG - chr1_1:65353867-65353886 Msa0036690:intron 35.0%
TGAAGTCAAAAGCCATTTAC+AGG - chr1_1:65353902-65353921 Msa0036690:intron 35.0%
TTAGTCCCTTTCAATTGCAT+AGG - chr1_1:65354045-65354064 Msa0036690:CDS 35.0%
! TCTGTTTTGCACAGAAATAC+CGG - chr1_1:65354157-65354176 Msa0036690:CDS 35.0%
TTTGTCCAACAACAAGAGTA+TGG - chr1_1:65354264-65354283 Msa0036690:intron 35.0%
TAGCTTCATCAACAACAACA+GGG - chr1_1:65354292-65354311 Msa0036690:intron 35.0%
TTAAGAAACCAGAGTTCAAG+AGG - chr1_1:65354385-65354404 Msa0036690:intron 35.0%
AGCATTCAATCTCAGATGAA+AGG - chr1_1:65354412-65354431 Msa0036690:CDS 35.0%
GCATTCAATCTCAGATGAAA+GGG - chr1_1:65354413-65354432 Msa0036690:CDS 35.0%
CATTCAATCTCAGATGAAAG+GGG - chr1_1:65354414-65354433 Msa0036690:CDS 35.0%
! ATTGGTAGTAGTATGTGTAG+AGG + chr1_1:65354487-65354506 None:intergenic 35.0%
CTGCATTGTGAAGGCAAAAA+TGG + chr1_1:65352757-65352776 None:intergenic 40.0%
! TTTGAAACGCTGCATTGTGA+AGG + chr1_1:65352766-65352785 None:intergenic 40.0%
CACAATGCAGCGTTTCAAAA+TGG - chr1_1:65352767-65352786 Msa0036690:CDS 40.0%
GACGTTCTTGTTCTAATGCT+TGG + chr1_1:65352809-65352828 None:intergenic 40.0%
! GTAACGAGTTCTAACGAAAG+AGG + chr1_1:65352861-65352880 None:intergenic 40.0%
TCGTTAGAACTCGTTACACA+AGG - chr1_1:65352864-65352883 Msa0036690:CDS 40.0%
GAACAGACAACATCAACAGA+TGG - chr1_1:65353080-65353099 Msa0036690:CDS 40.0%
GGCTTAGATCTGTTCAGTTA+TGG - chr1_1:65353246-65353265 Msa0036690:intron 40.0%
TTCAGATCCTTCATCTGAAG+AGG - chr1_1:65353271-65353290 Msa0036690:intron 40.0%
TAAGAAAACAGTGCCTGTGT+TGG - chr1_1:65353439-65353458 Msa0036690:intron 40.0%
TTGAAGAGAAATGGAAGTGG+TGG - chr1_1:65353464-65353483 Msa0036690:intron 40.0%
ATTAGCCGCATTAGAACTCA+CGG + chr1_1:65353585-65353604 None:intergenic 40.0%
GATGTCTCCAACATTGTTAC+TGG + chr1_1:65353612-65353631 None:intergenic 40.0%
CATCAAAAGAGACGAGAAAG+AGG - chr1_1:65353628-65353647 Msa0036690:CDS 40.0%
! TTGGTCTTCTAGTATGCAAC+CGG + chr1_1:65354179-65354198 None:intergenic 40.0%
ATGTTGCCTACAAGGACAAA+AGG + chr1_1:65354243-65354262 None:intergenic 40.0%
GGACAAAAATGTTGCCTACA+AGG + chr1_1:65354251-65354270 None:intergenic 40.0%
! TCCAACAACAAGAGTATGGT+GGG - chr1_1:65354268-65354287 Msa0036690:intron 40.0%
GTAGCTTCATCAACAACAAC+AGG - chr1_1:65354291-65354310 Msa0036690:intron 40.0%
AGCTTCATCAACAACAACAG+GGG - chr1_1:65354293-65354312 Msa0036690:intron 40.0%
AACAGGGGAAATGACAAAAG+TGG - chr1_1:65354308-65354327 Msa0036690:intron 40.0%
GAAAGGGGTAATAACAGTGA+AGG - chr1_1:65354429-65354448 Msa0036690:CDS 40.0%
TGTGTAGAGGATGAAGATGT+AGG + chr1_1:65354474-65354493 None:intergenic 40.0%
! TCAATAACCAGGGGAAGTAT+TGG + chr1_1:65354505-65354524 None:intergenic 40.0%
CTGCATTGTGAAGGCAAAAA+TGG + chr1_1:65352757-65352776 None:intergenic 40.0%
! TTTGAAACGCTGCATTGTGA+AGG + chr1_1:65352766-65352785 None:intergenic 40.0%
CACAATGCAGCGTTTCAAAA+TGG - chr1_1:65352767-65352786 Msa0036690:CDS 40.0%
GACGTTCTTGTTCTAATGCT+TGG + chr1_1:65352809-65352828 None:intergenic 40.0%
! GTAACGAGTTCTAACGAAAG+AGG + chr1_1:65352861-65352880 None:intergenic 40.0%
TCGTTAGAACTCGTTACACA+AGG - chr1_1:65352864-65352883 Msa0036690:CDS 40.0%
GAACAGACAACATCAACAGA+TGG - chr1_1:65353080-65353099 Msa0036690:CDS 40.0%
GGCTTAGATCTGTTCAGTTA+TGG - chr1_1:65353246-65353265 Msa0036690:intron 40.0%
TTCAGATCCTTCATCTGAAG+AGG - chr1_1:65353271-65353290 Msa0036690:intron 40.0%
TAAGAAAACAGTGCCTGTGT+TGG - chr1_1:65353439-65353458 Msa0036690:intron 40.0%
TTGAAGAGAAATGGAAGTGG+TGG - chr1_1:65353464-65353483 Msa0036690:intron 40.0%
ATTAGCCGCATTAGAACTCA+CGG + chr1_1:65353585-65353604 None:intergenic 40.0%
GATGTCTCCAACATTGTTAC+TGG + chr1_1:65353612-65353631 None:intergenic 40.0%
CATCAAAAGAGACGAGAAAG+AGG - chr1_1:65353628-65353647 Msa0036690:CDS 40.0%
! TTGGTCTTCTAGTATGCAAC+CGG + chr1_1:65354179-65354198 None:intergenic 40.0%
ATGTTGCCTACAAGGACAAA+AGG + chr1_1:65354243-65354262 None:intergenic 40.0%
GGACAAAAATGTTGCCTACA+AGG + chr1_1:65354251-65354270 None:intergenic 40.0%
! TCCAACAACAAGAGTATGGT+GGG - chr1_1:65354268-65354287 Msa0036690:intron 40.0%
GTAGCTTCATCAACAACAAC+AGG - chr1_1:65354291-65354310 Msa0036690:intron 40.0%
AGCTTCATCAACAACAACAG+GGG - chr1_1:65354293-65354312 Msa0036690:intron 40.0%
AACAGGGGAAATGACAAAAG+TGG - chr1_1:65354308-65354327 Msa0036690:intron 40.0%
GAAAGGGGTAATAACAGTGA+AGG - chr1_1:65354429-65354448 Msa0036690:CDS 40.0%
TGTGTAGAGGATGAAGATGT+AGG + chr1_1:65354474-65354493 None:intergenic 40.0%
! TCAATAACCAGGGGAAGTAT+TGG + chr1_1:65354505-65354524 None:intergenic 40.0%
! CTGAAGAGAATGGCGTTTTG+TGG + chr1_1:65352707-65352726 None:intergenic 45.0%
GCTTGTCGACAACAATTGTC+TGG - chr1_1:65353014-65353033 Msa0036690:CDS 45.0%
AAGAGAAATGGAAGTGGTGG+TGG - chr1_1:65353467-65353486 Msa0036690:intron 45.0%
AGGAAAAGAGAAAGCAGCGA+CGG - chr1_1:65353648-65353667 Msa0036690:CDS 45.0%
GTTGCACAAGCGATTCTTGA+AGG - chr1_1:65353685-65353704 Msa0036690:CDS 45.0%
!! CTCTCTGATTTGCTTTGGTG+TGG + chr1_1:65353853-65353872 None:intergenic 45.0%
CACACCAAAGCAAATCAGAG+AGG - chr1_1:65353851-65353870 Msa0036690:intron 45.0%
!! AGGTGCTGCTGTTTGTGAAT+TGG + chr1_1:65354223-65354242 None:intergenic 45.0%
! GTCCAACAACAAGAGTATGG+TGG - chr1_1:65354267-65354286 Msa0036690:intron 45.0%
! CCAACAACAAGAGTATGGTG+GGG - chr1_1:65354269-65354288 Msa0036690:intron 45.0%
ACAAAAGTGGTTGCACCTTC+TGG - chr1_1:65354321-65354340 Msa0036690:intron 45.0%
ACTGGTGCATAGATTCCAGA+AGG + chr1_1:65354339-65354358 None:intergenic 45.0%
TGTAGCAACTTGAGGATGTG+TGG + chr1_1:65354364-65354383 None:intergenic 45.0%
TGCTCAAACCTCTTGAACTC+TGG + chr1_1:65354396-65354415 None:intergenic 45.0%
ACTACTACCAATACTTCCCC+TGG - chr1_1:65354495-65354514 Msa0036690:exon 45.0%
! CTGAAGAGAATGGCGTTTTG+TGG + chr1_1:65352707-65352726 None:intergenic 45.0%
GCTTGTCGACAACAATTGTC+TGG - chr1_1:65353014-65353033 Msa0036690:CDS 45.0%
AAGAGAAATGGAAGTGGTGG+TGG - chr1_1:65353467-65353486 Msa0036690:intron 45.0%
AGGAAAAGAGAAAGCAGCGA+CGG - chr1_1:65353648-65353667 Msa0036690:CDS 45.0%
GTTGCACAAGCGATTCTTGA+AGG - chr1_1:65353685-65353704 Msa0036690:CDS 45.0%
!! CTCTCTGATTTGCTTTGGTG+TGG + chr1_1:65353853-65353872 None:intergenic 45.0%
CACACCAAAGCAAATCAGAG+AGG - chr1_1:65353851-65353870 Msa0036690:intron 45.0%
!! AGGTGCTGCTGTTTGTGAAT+TGG + chr1_1:65354223-65354242 None:intergenic 45.0%
! GTCCAACAACAAGAGTATGG+TGG - chr1_1:65354267-65354286 Msa0036690:intron 45.0%
! CCAACAACAAGAGTATGGTG+GGG - chr1_1:65354269-65354288 Msa0036690:intron 45.0%
ACAAAAGTGGTTGCACCTTC+TGG - chr1_1:65354321-65354340 Msa0036690:intron 45.0%
ACTGGTGCATAGATTCCAGA+AGG + chr1_1:65354339-65354358 None:intergenic 45.0%
TGTAGCAACTTGAGGATGTG+TGG + chr1_1:65354364-65354383 None:intergenic 45.0%
TGCTCAAACCTCTTGAACTC+TGG + chr1_1:65354396-65354415 None:intergenic 45.0%
ACTACTACCAATACTTCCCC+TGG - chr1_1:65354495-65354514 Msa0036690:exon 45.0%
!!! TTATTTTTGAAAAATAATTT+TGG - chr1_1:65352962-65352981 Msa0036690:CDS 5.0%
!!! TTATTTTTGAAAAATAATTT+TGG - chr1_1:65352962-65352981 Msa0036690:CDS 5.0%
AGACAGTTCGCGAAGAACTC+GGG + chr1_1:65352543-65352562 None:intergenic 50.0%
GAGACAGTTCGCGAAGAACT+CGG + chr1_1:65352544-65352563 None:intergenic 50.0%
TGGAAGCAAGAGAGAGAGTG+GGG + chr1_1:65352687-65352706 None:intergenic 50.0%
GTGGAAGCAAGAGAGAGAGT+GGG + chr1_1:65352688-65352707 None:intergenic 50.0%
TGTGGAAGCAAGAGAGAGAG+TGG + chr1_1:65352689-65352708 None:intergenic 50.0%
AAAGGACAACCCTCTTCGAC+CGG - chr1_1:65353551-65353570 Msa0036690:CDS 50.0%
! AGCTGCCGTGAGTTCTAATG+CGG - chr1_1:65353577-65353596 Msa0036690:CDS 50.0%
!! TTGAAGGCGCTTCAGCAACT+TGG - chr1_1:65353701-65353720 Msa0036690:CDS 50.0%
! GCAGCACCTTTTGTCCTTGT+AGG - chr1_1:65354234-65354253 Msa0036690:CDS 50.0%
! CCCCACCATACTCTTGTTGT+TGG + chr1_1:65354272-65354291 None:intergenic 50.0%
ACTTGAGGATGTGTGGCTAC+TGG + chr1_1:65354357-65354376 None:intergenic 50.0%
AGACAGTTCGCGAAGAACTC+GGG + chr1_1:65352543-65352562 None:intergenic 50.0%
GAGACAGTTCGCGAAGAACT+CGG + chr1_1:65352544-65352563 None:intergenic 50.0%
TGGAAGCAAGAGAGAGAGTG+GGG + chr1_1:65352687-65352706 None:intergenic 50.0%
GTGGAAGCAAGAGAGAGAGT+GGG + chr1_1:65352688-65352707 None:intergenic 50.0%
TGTGGAAGCAAGAGAGAGAG+TGG + chr1_1:65352689-65352708 None:intergenic 50.0%
AAAGGACAACCCTCTTCGAC+CGG - chr1_1:65353551-65353570 Msa0036690:CDS 50.0%
! AGCTGCCGTGAGTTCTAATG+CGG - chr1_1:65353577-65353596 Msa0036690:CDS 50.0%
!! TTGAAGGCGCTTCAGCAACT+TGG - chr1_1:65353701-65353720 Msa0036690:CDS 50.0%
! GCAGCACCTTTTGTCCTTGT+AGG - chr1_1:65354234-65354253 Msa0036690:CDS 50.0%
! CCCCACCATACTCTTGTTGT+TGG + chr1_1:65354272-65354291 None:intergenic 50.0%
ACTTGAGGATGTGTGGCTAC+TGG + chr1_1:65354357-65354376 None:intergenic 50.0%
AGAACTCACGGCAGCTACAC+CGG + chr1_1:65353573-65353592 None:intergenic 55.0%
! AAGGCGCTTCAGCAACTTGG+TGG - chr1_1:65353704-65353723 Msa0036690:CDS 55.0%
GACAGTTCGCGAAGAACTCG+GGG + chr1_1:65352542-65352561 None:intergenic 55.0%
AGAACTCACGGCAGCTACAC+CGG + chr1_1:65353573-65353592 None:intergenic 55.0%
! AAGGCGCTTCAGCAACTTGG+TGG - chr1_1:65353704-65353723 Msa0036690:CDS 55.0%
GCAGCTACACCGGTCGAAGA+GGG + chr1_1:65353563-65353582 None:intergenic 60.0%
AGAGAAAGCAGCGACGGTGC+TGG - chr1_1:65353654-65353673 Msa0036690:CDS 60.0%
GCAGCTACACCGGTCGAAGA+GGG + chr1_1:65353563-65353582 None:intergenic 60.0%
AGAGAAAGCAGCGACGGTGC+TGG - chr1_1:65353654-65353673 Msa0036690:CDS 60.0%
GGCAGCTACACCGGTCGAAG+AGG + chr1_1:65353564-65353583 None:intergenic 65.0%
GGCAGCTACACCGGTCGAAG+AGG + chr1_1:65353564-65353583 None:intergenic 65.0%
!! GCAGCGACGGTGCTGGTCGC+AGG - chr1_1:65353661-65353680 Msa0036690:CDS 75.0%
!! GCAGCGACGGTGCTGGTCGC+AGG - chr1_1:65353661-65353680 Msa0036690:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65352540 65354739 65352540 ID=Msa0036690;Name=Msa0036690
chr1_1 mRNA 65352540 65354739 65352540 ID=Msa0036690-mRNA-1;Parent=Msa0036690;Name=Msa0036690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=231|1|1|1|1|1|5|215|378
chr1_1 exon 65352540 65353108 65352540 ID=Msa0036690-mRNA-1:exon:21060;Parent=Msa0036690-mRNA-1
chr1_1 exon 65353356 65353432 65353356 ID=Msa0036690-mRNA-1:exon:21059;Parent=Msa0036690-mRNA-1
chr1_1 exon 65353545 65353848 65353545 ID=Msa0036690-mRNA-1:exon:21058;Parent=Msa0036690-mRNA-1
chr1_1 exon 65353987 65354273 65353987 ID=Msa0036690-mRNA-1:exon:21057;Parent=Msa0036690-mRNA-1
chr1_1 exon 65354394 65354739 65354394 ID=Msa0036690-mRNA-1:exon:21056;Parent=Msa0036690-mRNA-1
chr1_1 five_prime_UTR 65354509 65354739 65354509 ID=Msa0036690-mRNA-1:five_prime_utr;Parent=Msa0036690-mRNA-1
chr1_1 CDS 65354394 65354508 65354394 ID=Msa0036690-mRNA-1:cds;Parent=Msa0036690-mRNA-1
chr1_1 CDS 65353987 65354273 65353987 ID=Msa0036690-mRNA-1:cds;Parent=Msa0036690-mRNA-1
chr1_1 CDS 65353545 65353848 65353545 ID=Msa0036690-mRNA-1:cds;Parent=Msa0036690-mRNA-1
chr1_1 CDS 65353356 65353432 65353356 ID=Msa0036690-mRNA-1:cds;Parent=Msa0036690-mRNA-1
chr1_1 CDS 65352755 65353108 65352755 ID=Msa0036690-mRNA-1:cds;Parent=Msa0036690-mRNA-1
chr1_1 three_prime_UTR 65352540 65352754 65352540 ID=Msa0036690-mRNA-1:three_prime_utr;Parent=Msa0036690-mRNA-1
Gene Sequence

>Msa0036690

ATGCAGCGTTTCAAAATGGGTTTCTCTGATTATATCCAAGCATTAGAACAAGAACGTCGTAAGATTCAAGTCTTTCCTAAAGAACTTCCTCTTTCGTTAGAACTCGTTACACAAGCTATTGAAGCTTGTCGACAACAATTGTCTGGAACAACAACTGAGTATAATTTGAATGGACAATCTGAGTGTTCTGAACAGACAACATCAACAGATGGACCTGTTTTAGAAGAGTTTATTCCAATTAAGAAAAGGGCTTCTTCTTATTCTCAAGAAGTGTTTGATGATGTAGAAGATTATGATCAACATTTTCATCATAAGCAACAAAAACTTTCATTAGATAATAAGAAGAAATCTGACTGGCTTAGATCTGTTCAGTTATGGAATTCAGATCCTTCATCTGAAGAGGATGTTACTAAGAAAACAGTGCCTGTGTTGGAATTGAAGAGAAATGGAAGTGGTGGTGGTGCTTTTCATCCATTCCATAAAGAAGATAGAGTTAACAACAAGACAAGTGAATTGTTAAGTAAAGGACAACCCTCTTCGACCGGTGTAGCTGCCGTGAGTTCTAATGCGGCTAATGTCACCAGTAACAATGTTGGAGACATCAAAAGAGACGAGAAAGAGGAAAAGAGAAAGCAGCGACGGTGCTGGTCGCAGGAGTTGCACAAGCGATTCTTGAAGGCGCTTCAGCAACTTGGTGGTGCAGATTGTGCCACACCAAAGCAAATCAGAGAGGTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGGTTGCATACTAGAAGACCAAGTTCAACAAATAACGAAAGTGCCAATTCACAAACAGCAGCACCTTTTGTCCTTGTAGGCAACATTTTTGTCCAACAACAAGAGTATGGTGGGGTAGCTTCATCAACAACAACAGGGGAAATGACAAAAGTGGTTGCACCTTCTGGAATCTATGCACCAGTAGCCACACATCCTCAAGTTGCTACAATTAAGAAACCAGAGTTCAAGAGGTTTGAGCATTCAATCTCAGATGAAAGGGGTAATAACAGTGAAGGTGCTGTTCATTCAAATTCACCTACATCTTCATCCTCTACACATACTACTACCAATACTTCCCCTGGTTATTGA
Protein sequence

>Msa0036690

MQRFKMGFSDYIQALEQERRKIQVFPKELPLSLELVTQAIEACRQQLSGTTTEYNLNGQSECSEQTTSTDGPVLEEFIPIKKRASSYSQEVFDDVEDYDQHFHHKQQKLSLDNKKKSDWLRSVQLWNSDPSSEEDVTKKTVPVLELKRNGSGGGAFHPFHKEDRVNNKTSELLSKGQPSSTGVAAVSSNAANVTSNNVGDIKRDEKEEKRKQRRCWSQELHKRFLKALQQLGGADCATPKQIREVMNVDGLTNDEVKSHLQKYRLHTRRPSSTNNESANSQTAAPFVLVGNIFVQQQEYGGVASSTTTGEMTKVVAPSGIYAPVATHPQVATIKKPEFKRFEHSISDERGNNSEGAVHSNSPTSSSSTHTTTNTSPGY*