AlfalfaGEDB | Msa0130430

M. sativa cultivar zhongmu-4 / Msa0130430

KEGG: -
GO: GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0130430	XP_003591795.2	96.825	378	12	0	1	378	1	378	0.0	762

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0130430	sp\|Q8VZS3\|HHO2_ARATH	47.929	338	126	12	10	326	16	324	1.57e-78	248

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0130430	G7I465	96.825	378	12	0	1	378	1	378	0.0	762

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TFs/TRs:

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Gene ID	Type	Classification
Msa0130430	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036610	Msa0130430	0.956624	1.899079e-114	-8.615850e-47
Msa0036690	Msa0130430	0.992878	5.170481e-196	-8.615850e-47
Msa0130430	Msa0260230	0.803865	2.842971e-49	-8.615850e-47
Msa0130430	Msa0304270	0.806955	6.395751e-50	-8.615850e-47
Msa0130430	Msa0494560	0.821761	3.400598e-53	-8.615850e-47
Msa0130430	Msa1139670	0.803186	3.930425e-49	-8.615850e-47
Msa0130430	Msa1443690	0.988520	2.424529e-174	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0130430	MtrunA17_Chr1g0198601	96.825	378	12	0	1	378	1	378	0.0	762
Msa0130430	MtrunA17_Chr5g0422621	57.105	380	127	14	1	374	10	359	4.80e-125	364
Msa0130430	MtrunA17_Chr4g0062921	35.443	316	142	6	8	294	33	315	1.83e-48	169
Msa0130430	MtrunA17_Chr4g0045361	34.930	355	146	11	10	309	44	368	8.69e-43	154
Msa0130430	MtrunA17_Chr5g0402631	33.636	330	142	12	2	324	56	315	1.09e-33	128
Msa0130430	MtrunA17_Chr2g0291021	56.061	66	29	0	211	276	49	114	1.09e-15	77.4
Msa0130430	MtrunA17_Chr2g0294911	37.008	127	57	4	210	323	210	326	2.33e-15	77.8
Msa0130430	MtrunA17_Chr2g0304841	38.462	117	63	4	209	323	211	320	7.13e-15	76.3
Msa0130430	MtrunA17_Chr4g0067981	53.521	71	32	1	210	280	214	283	7.15e-15	76.3
Msa0130430	MtrunA17_Chr7g0254981	55.385	65	29	0	211	275	50	114	1.15e-14	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0130430	AT1G68670.1	47.929	338	126	12	10	326	16	324	1.60e-79	248
Msa0130430	AT1G25550.1	46.386	332	125	11	10	328	20	311	1.32e-77	243
Msa0130430	AT3G25790.1	43.869	367	166	8	10	372	20	350	5.67e-75	236
Msa0130430	AT1G13300.1	43.207	368	148	12	11	368	20	336	6.51e-71	226
Msa0130430	AT1G25550.2	49.231	260	104	8	10	261	20	259	1.25e-66	213
Msa0130430	AT3G25790.2	46.457	254	109	4	9	261	19	246	1.81e-56	186
Msa0130430	AT2G03500.1	35.802	324	126	9	8	294	36	314	2.12e-48	169
Msa0130430	AT4G37180.1	33.935	277	109	8	11	269	48	268	3.17e-33	127
Msa0130430	AT4G37180.2	33.574	277	117	8	11	269	48	275	1.35e-30	120
Msa0130430	AT1G49560.1	32.542	295	132	9	10	293	30	268	4.24e-30	118

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Find 89 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTTTATGTAAGAAG+AGG	0.585452	1_3:+60615252	None:intergenic
AAAATTAAAACTCAATAACC+AGG	0.575545	1_3:+60613477	None:intergenic
AAAGGACAACCCTCTTCGAC+CGG	0.587220	1_3:-60614439	Msa0130430:CDS
AAATTAAAACTCAATAACCA+GGG	0.590216	1_3:+60613478	None:intergenic
AACAGGGGAAATGACAAAAG+TGG	0.604173	1_3:-60613682	Msa0130430:CDS
AACGAAAGAGGAAGTTCTTT+AGG	0.297245	1_3:+60615144	None:intergenic
AAGAGAAATGGAAGTGGTGG+TGG	0.523432	1_3:-60614523	Msa0130430:CDS
AAGGCGCTTCAGCAACTTGG+TGG	0.504237	1_3:-60614286	Msa0130430:CDS
AATAACATTATACAACAAAA+AGG	0.387476	1_3:+60613386	None:intergenic
AATCACATACAACATAAATG+AGG	0.600136	1_3:+60613362	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAGGAGAAACAAAGAA+GGG	+	chr1_3:60613305-60613324	None:intergenic	30.0%
ATTATTACCTCTTCAGATGA+AGG	+	chr1_3:60614016-60614035	None:intergenic	30.0%
ACTCTATCTTCTTTATGGAA+TGG	+	chr1_3:60614238-60614257	None:intergenic	30.0%
CATATCTACAAACCTGTAAA+TGG	+	chr1_3:60614652-60614671	None:intergenic	30.0%
GAAATCCTATGCAATTGAAA+GGG	+	chr1_3:60614788-60614807	None:intergenic	30.0%
TGAAATCCTATGCAATTGAA+AGG	+	chr1_3:60614789-60614808	None:intergenic	30.0%
TTCTTAATTGTAGCAACTTG+AGG	+	chr1_3:60615107-60615126	None:intergenic	30.0%
TGGTAGTATCCATCTAAAAA+AGG	+	chr1_3:60615446-60615465	None:intergenic	30.0%
AATGAAGGAGAAACAAAGAA+GGG	+	chr1_3:60613305-60613324	None:intergenic	30.0%
ATTATTACCTCTTCAGATGA+AGG	+	chr1_3:60614016-60614035	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	60613273	60615474	60613273	ID=Msa0130430;Name=Msa0130430
chr1_3	mRNA	60613273	60615474	60613273	ID=Msa0130430-mRNA-1;Parent=Msa0130430;Name=Msa0130430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=233\|1\|1\|1\|1\|1\|5\|215\|378
chr1_3	exon	60613273	60613841	60613273	ID=Msa0130430-mRNA-1:exon:20010;Parent=Msa0130430-mRNA-1
chr1_3	exon	60614089	60614165	60614089	ID=Msa0130430-mRNA-1:exon:20009;Parent=Msa0130430-mRNA-1
chr1_3	exon	60614278	60614581	60614278	ID=Msa0130430-mRNA-1:exon:20008;Parent=Msa0130430-mRNA-1
chr1_3	exon	60614720	60615006	60614720	ID=Msa0130430-mRNA-1:exon:20007;Parent=Msa0130430-mRNA-1
chr1_3	exon	60615127	60615474	60615127	ID=Msa0130430-mRNA-1:exon:20006;Parent=Msa0130430-mRNA-1
chr1_3	five_prime_UTR	60615242	60615474	60615242	ID=Msa0130430-mRNA-1:five_prime_utr;Parent=Msa0130430-mRNA-1
chr1_3	CDS	60615127	60615241	60615127	ID=Msa0130430-mRNA-1:cds;Parent=Msa0130430-mRNA-1
chr1_3	CDS	60614720	60615006	60614720	ID=Msa0130430-mRNA-1:cds;Parent=Msa0130430-mRNA-1
chr1_3	CDS	60614278	60614581	60614278	ID=Msa0130430-mRNA-1:cds;Parent=Msa0130430-mRNA-1
chr1_3	CDS	60614089	60614165	60614089	ID=Msa0130430-mRNA-1:cds;Parent=Msa0130430-mRNA-1
chr1_3	CDS	60613488	60613841	60613488	ID=Msa0130430-mRNA-1:cds;Parent=Msa0130430-mRNA-1
chr1_3	three_prime_UTR	60613273	60613487	60613273	ID=Msa0130430-mRNA-1:three_prime_utr;Parent=Msa0130430-mRNA-1

Gene Sequence

>Msa0130430

ATGCAGCGTTTCAACATGGGTTTCTCTGATTATATCCAAGCATTAGAACAAGAACGACGTAAGATTCAAGTCTTTCCTAAAGAACTTCCTCTTTCGTTAGAACTCGTTACACAAGCTATTGAAGCTTGTCGACAACAATTGTCTGGAACAACAACTGAGTATAATTTGAATGGACAATCTGAGTGTTCTGAACAGACAACATCAACAGATGGACCTGTTTTAGAAGAGTTTATTCCAATTAAGAAAAGGGCTTCTTCTTATTCTCAAGAAGTGTTTGATGATGTAGAAGATTATGATCAACATTTTCATCATAAGCAACAAAAACTTTCATTAGATAATAAGAAGAAATCTGACTGGCTTAGATCTGTTCAGTTATGGAATTCAGATCCTTCATCTGAAGAGGATGTTACTAAGAAAACAGTGCCTGTGTTGGAATTGAAGAGAAATGGAAGTGGTGGTGGTGCTTTTCATCCATTCCATAAAGAAGATAGAGTTAACAACAAGACAAGTGAATTGTTAAGTAAAGGACAACCCTCTTCGACCGGTGTAGCTGCCGTGAGTTCTAATGCGGCTAATGTCACCAGTAACAATGTTGGAGACATCAAAAGAGACGAGAAAGAGGAAAAGAGAAAGCAGCGACGGTGCTGGTCGCAGGAGTTGCACAAGCGATTCTTGAAGGCGCTTCAGCAACTTGGTGGTGCAGATTGTGCCACACCAAAGCAAATCAGAGAGGTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGGTTGCATACTAGAAGACCAAGTTCAACAAATAACGAAAGTGCCAATTCACAAACAGCAGCACCTTTTGTCCTTGTAGGCAACATTTTTGTCCAACAACAAGAGTATGGTGGGGTAGCTTCATCAACAACAACAGGGGAAATGACAAAAGTGGTTGCACCTTCTGGAATCTATGCACCAGTAGCCACACATCCTCAAGTTGCTACAATTAAGAAACCAGAGTTCAAGAGGTTTGAGCATTCAATCTCAGATGAAAGGGGTAATAACAGTGAAGGTGCTGTTCATTCAAATTCACCTACATCTTCATCCTCTACACATACTACTACCAATACTTCCCCTGGTTATTGA

Protein sequence

>Msa0130430

MQRFNMGFSDYIQALEQERRKIQVFPKELPLSLELVTQAIEACRQQLSGTTTEYNLNGQSECSEQTTSTDGPVLEEFIPIKKRASSYSQEVFDDVEDYDQHFHHKQQKLSLDNKKKSDWLRSVQLWNSDPSSEEDVTKKTVPVLELKRNGSGGGAFHPFHKEDRVNNKTSELLSKGQPSSTGVAAVSSNAANVTSNNVGDIKRDEKEEKRKQRRCWSQELHKRFLKALQQLGGADCATPKQIREVMNVDGLTNDEVKSHLQKYRLHTRRPSSTNNESANSQTAAPFVLVGNIFVQQQEYGGVASSTTTGEMTKVVAPSGIYAPVATHPQVATIKKPEFKRFEHSISDERGNNSEGAVHSNSPTSSSSTHTTTNTSPGY*