AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130430 MtrunA17_Chr1g0198601 96.825 378 12 0 1 378 1 378 0.0 762
Msa0130430 MtrunA17_Chr5g0422621 57.105 380 127 14 1 374 10 359 4.80e-125 364
Msa0130430 MtrunA17_Chr4g0062921 35.443 316 142 6 8 294 33 315 1.83e-48 169
Msa0130430 MtrunA17_Chr4g0045361 34.930 355 146 11 10 309 44 368 8.69e-43 154
Msa0130430 MtrunA17_Chr5g0402631 33.636 330 142 12 2 324 56 315 1.09e-33 128
Msa0130430 MtrunA17_Chr2g0291021 56.061 66 29 0 211 276 49 114 1.09e-15 77.4
Msa0130430 MtrunA17_Chr2g0294911 37.008 127 57 4 210 323 210 326 2.33e-15 77.8
Msa0130430 MtrunA17_Chr2g0304841 38.462 117 63 4 209 323 211 320 7.13e-15 76.3
Msa0130430 MtrunA17_Chr4g0067981 53.521 71 32 1 210 280 214 283 7.15e-15 76.3
Msa0130430 MtrunA17_Chr7g0254981 55.385 65 29 0 211 275 50 114 1.15e-14 73.6
Msa0130430 MtrunA17_Chr4g0074411 53.968 63 28 1 209 271 199 260 1.78e-14 75.1
Msa0130430 MtrunA17_Chr1g0161431 48.611 72 36 1 200 271 189 259 3.26e-14 74.3
Msa0130430 MtrunA17_Chr3g0137101 45.679 81 42 2 204 284 191 269 4.20e-14 73.9
Msa0130430 MtrunA17_Chr5g0400241 51.515 66 31 1 204 269 304 368 6.81e-14 73.2
Msa0130430 MtrunA17_Chr5g0417521 61.818 55 21 0 211 265 15 69 9.49e-14 71.6
Msa0130430 MtrunA17_Chr4g0074401 50.000 66 32 1 206 271 198 262 1.03e-13 72.4
Msa0130430 MtrunA17_Chr7g0274471 54.839 62 28 0 211 272 218 279 2.12e-13 71.2
Msa0130430 MtrunA17_Chr4g0054981 41.489 94 51 2 178 268 274 366 2.17e-13 71.6
Msa0130430 MtrunA17_Chr1g0149841 52.381 63 29 1 209 271 189 250 2.21e-13 71.2
Msa0130430 MtrunA17_Chr7g0261911 43.902 82 44 1 211 292 262 341 2.58e-13 71.2
Msa0130430 MtrunA17_Chr2g0290991 60.000 55 22 0 211 265 39 93 6.04e-13 68.9
Msa0130430 MtrunA17_Chr8g0356501 54.545 66 29 1 211 276 37 101 6.12e-13 69.3
Msa0130430 MtrunA17_Chr1g0190301 50.794 63 31 0 211 273 175 237 7.02e-13 69.3
Msa0130430 MtrunA17_Chr4g0031961 43.243 74 41 1 207 280 127 199 8.21e-13 68.6
Msa0130430 MtrunA17_Chr6g0461641 48.529 68 35 0 211 278 42 109 1.12e-12 68.9
Msa0130430 MtrunA17_Chr2g0310011 60.000 55 22 0 211 265 35 89 1.13e-12 68.6
Msa0130430 MtrunA17_Chr4g0042451 58.182 55 23 0 211 265 17 71 1.17e-12 68.6
Msa0130430 MtrunA17_Chr7g0255711 40.244 82 45 2 188 269 71 148 1.25e-12 67.8
Msa0130430 MtrunA17_Chr2g0321461 56.364 55 24 0 211 265 45 99 1.26e-12 68.6
Msa0130430 MtrunA17_Chr1g0175091 51.667 60 29 0 211 270 258 317 1.37e-12 68.6
Msa0130430 MtrunA17_Chr1g0175081 39.744 78 32 1 188 265 14 76 1.43e-12 63.5
Msa0130430 MtrunA17_Chr1g0149831 45.588 68 33 1 209 276 126 189 1.54e-12 66.6
Msa0130430 MtrunA17_Chr7g0275891 42.857 84 36 2 209 280 189 272 1.88e-12 67.8
Msa0130430 MtrunA17_Chr4g0040481 45.070 71 38 1 209 279 156 225 2.70e-12 67.8
Msa0130430 MtrunA17_Chr4g0009901 48.571 70 35 1 200 269 157 225 2.90e-12 66.6
Msa0130430 MtrunA17_Chr1g0197171 58.182 55 23 0 211 265 44 98 3.64e-12 66.6
Msa0130430 MtrunA17_Chr2g0324891 45.070 71 38 1 209 279 159 228 5.13e-12 67.0
Msa0130430 MtrunA17_Chr8g0376881 46.479 71 37 1 210 280 208 277 5.31e-12 67.0
Msa0130430 MtrunA17_Chr5g0409731 50.820 61 28 1 211 269 25 85 1.73e-11 64.3
Msa0130430 MtrunA17_Chr4g0009981 42.857 77 43 1 210 286 115 190 2.05e-11 63.9
Msa0130430 MtrunA17_Chr3g0123131 40.698 86 45 2 200 280 183 267 2.52e-11 65.1
Msa0130430 MtrunA17_Chr6g0473731 43.243 74 41 1 210 283 94 166 2.92e-11 64.7
Msa0130430 MtrunA17_Chr7g0258551 46.269 67 36 0 211 277 212 278 3.57e-11 64.3
Msa0130430 MtrunA17_Chr2g0288601 55.102 49 22 0 213 261 73 121 4.69e-11 60.1
Msa0130430 MtrunA17_Chr4g0009851 40.506 79 46 1 208 286 166 243 6.72e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130430 AT1G68670.1 47.929 338 126 12 10 326 16 324 1.60e-79 248
Msa0130430 AT1G25550.1 46.386 332 125 11 10 328 20 311 1.32e-77 243
Msa0130430 AT3G25790.1 43.869 367 166 8 10 372 20 350 5.67e-75 236
Msa0130430 AT1G13300.1 43.207 368 148 12 11 368 20 336 6.51e-71 226
Msa0130430 AT1G25550.2 49.231 260 104 8 10 261 20 259 1.25e-66 213
Msa0130430 AT3G25790.2 46.457 254 109 4 9 261 19 246 1.81e-56 186
Msa0130430 AT2G03500.1 35.802 324 126 9 8 294 36 314 2.12e-48 169
Msa0130430 AT4G37180.1 33.935 277 109 8 11 269 48 268 3.17e-33 127
Msa0130430 AT4G37180.2 33.574 277 117 8 11 269 48 275 1.35e-30 120
Msa0130430 AT1G49560.1 32.542 295 132 9 10 293 30 268 4.24e-30 118
Msa0130430 AT4G37180.3 33.086 269 106 8 11 261 48 260 1.26e-28 113
Msa0130430 AT1G49560.2 31.939 263 118 8 10 261 30 242 4.11e-23 97.8
Msa0130430 AT2G01060.1 57.812 64 27 0 211 274 15 78 1.99e-15 76.3
Msa0130430 AT3G16857.3 35.252 139 79 3 199 336 155 283 9.07e-15 76.3
Msa0130430 AT3G16857.2 34.752 141 81 3 199 338 225 355 9.77e-15 76.3
Msa0130430 AT3G16857.1 34.752 141 81 3 199 338 225 355 1.05e-14 76.3
Msa0130430 AT5G58080.1 50.000 66 32 1 204 269 187 251 3.86e-14 74.3
Msa0130430 AT3G04030.1 53.846 65 30 0 211 275 45 109 9.21e-14 72.4
Msa0130430 AT3G04030.3 53.846 65 30 0 211 275 45 109 1.06e-13 72.4
Msa0130430 AT2G25180.1 31.902 163 94 5 209 356 193 353 1.08e-13 72.8
Msa0130430 AT5G05090.1 45.570 79 41 2 192 269 61 138 1.79e-13 70.5
Msa0130430 AT5G06800.3 53.226 62 29 0 211 272 192 253 2.74e-13 70.1
Msa0130430 AT5G18240.2 58.182 55 23 0 211 265 45 99 3.45e-13 70.9
Msa0130430 AT5G18240.3 58.182 55 23 0 211 265 45 99 3.45e-13 70.9
Msa0130430 AT5G18240.1 58.182 55 23 0 211 265 45 99 3.98e-13 70.5
Msa0130430 AT5G18240.4 58.182 55 23 0 211 265 45 99 3.98e-13 70.5
Msa0130430 AT5G18240.5 58.182 55 23 0 211 265 45 99 3.99e-13 70.5
Msa0130430 AT2G01760.3 44.156 77 42 1 210 286 134 209 4.98e-13 69.7
Msa0130430 AT5G44190.2 43.750 80 44 1 200 279 136 214 6.16e-13 69.7
Msa0130430 AT2G01760.2 44.156 77 42 1 210 286 227 302 6.52e-13 70.1
Msa0130430 AT5G44190.1 43.750 80 44 1 200 279 136 214 6.80e-13 69.7
Msa0130430 AT2G01760.1 44.156 77 42 1 210 286 199 274 7.73e-13 69.7
Msa0130430 AT5G06800.1 53.226 62 29 0 211 272 192 253 9.49e-13 69.3
Msa0130430 AT3G10760.1 44.444 81 43 2 190 269 83 162 9.53e-13 68.9
Msa0130430 AT5G06800.2 53.226 62 29 0 211 272 192 253 1.03e-12 69.3
Msa0130430 AT2G40970.1 45.070 71 38 1 199 269 93 162 1.05e-12 67.8
Msa0130430 AT3G46640.3 33.113 151 92 4 134 276 59 208 1.44e-12 68.6
Msa0130430 AT5G45580.1 44.595 74 41 0 211 284 7 80 1.46e-12 67.8
Msa0130430 AT3G46640.2 46.269 67 35 1 210 276 143 208 1.50e-12 68.2
Msa0130430 AT3G46640.1 46.269 67 35 1 210 276 143 208 1.50e-12 68.2
Msa0130430 AT1G79430.2 60.000 55 22 0 211 265 34 88 1.52e-12 68.6
Msa0130430 AT5G45580.2 44.595 74 41 0 211 284 23 96 1.54e-12 67.8
Msa0130430 AT3G04450.3 51.667 60 29 0 211 270 238 297 1.61e-12 68.2
Msa0130430 AT5G59570.2 38.318 107 64 2 163 269 94 198 2.16e-12 67.8
Msa0130430 AT5G59570.1 38.318 107 64 2 163 269 94 198 2.16e-12 67.8
Msa0130430 AT3G24120.1 58.182 55 23 0 211 265 41 95 2.26e-12 67.4
Msa0130430 AT5G29000.4 49.206 63 32 0 211 273 231 293 2.34e-12 67.8
Msa0130430 AT4G13640.2 58.182 55 23 0 211 265 37 91 2.39e-12 67.4
Msa0130430 AT3G24120.2 58.182 55 23 0 211 265 41 95 2.52e-12 67.4
Msa0130430 AT4G13640.1 58.182 55 23 0 211 265 37 91 2.58e-12 67.4
Msa0130430 AT3G13040.3 52.459 61 29 0 210 270 240 300 2.99e-12 68.2
Msa0130430 AT3G13040.1 52.459 61 29 0 210 270 240 300 2.99e-12 68.2
Msa0130430 AT3G13040.2 52.459 61 29 0 210 270 240 300 2.99e-12 68.2
Msa0130430 AT3G04450.1 51.667 60 29 0 211 270 238 297 3.24e-12 68.2
Msa0130430 AT3G04450.4 51.667 60 29 0 211 270 198 257 3.58e-12 67.8
Msa0130430 AT3G04450.2 51.667 60 29 0 211 270 198 257 3.58e-12 67.8
Msa0130430 AT2G20570.1 47.945 73 37 1 207 279 149 220 4.19e-12 67.8
Msa0130430 AT5G29000.2 49.206 63 32 0 211 273 231 293 5.67e-12 67.0
Msa0130430 AT3G04030.2 52.308 65 30 1 211 275 45 108 5.86e-12 67.0
Msa0130430 AT5G29000.1 49.206 63 32 0 211 273 188 250 6.05e-12 67.0
Msa0130430 AT5G29000.3 49.206 63 32 0 211 273 188 250 6.05e-12 67.0
Msa0130430 AT4G28610.1 51.667 60 29 0 211 270 225 284 6.30e-12 67.0
Msa0130430 AT3G12730.1 56.364 55 24 0 211 265 23 77 7.11e-12 65.1
Msa0130430 AT2G42660.1 52.632 57 27 0 216 272 55 111 1.06e-11 65.1
Msa0130430 AT2G38300.1 51.923 52 25 0 213 264 56 107 1.85e-11 65.1
Msa0130430 AT4G31920.1 42.105 76 43 1 204 279 176 250 2.12e-11 65.9
Msa0130430 AT2G06020.1 50.909 55 27 0 211 265 86 140 2.43e-11 64.3
Msa0130430 AT1G49190.1 36.486 74 44 1 196 266 200 273 5.60e-11 63.9
Msa0130430 AT4G04605.1 51.923 52 25 0 213 264 16 67 8.28e-11 62.0

Find 89 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAACTCTATCTTCTTTA+TGG 0.063110 1_3:+60614485 None:intergenic
ACAAAAGTGGTTGCACCTTC+TGG 0.247597 1_3:-60613669 Msa0130430:CDS
CATATCTACAAACCTGTAAA+TGG 0.279375 1_3:+60614076 None:intergenic
TGAAGTCAAAAGCCATTTAC+AGG 0.284068 1_3:-60614088 Msa0130430:intron
AACGAAAGAGGAAGTTCTTT+AGG 0.297245 1_3:+60615144 None:intergenic
ATATCGATGAAGAAAGAATA+TGG 0.311789 1_3:+60615331 None:intergenic
GATGTCTCCAACATTGTTAC+TGG 0.321828 1_3:+60614381 None:intergenic
ATTACCTCTCTGATTTGCTT+TGG 0.356836 1_3:+60614135 None:intergenic
GTCGTTCTTGTTCTAATGCT+TGG 0.361767 1_3:+60615184 None:intergenic
CTTTCGTTATTTGTTGAACT+TGG 0.382926 1_3:+60613795 None:intergenic
AATAACATTATACAACAAAA+AGG 0.387476 1_3:+60613386 None:intergenic
GGCTTAGATCTGTTCAGTTA+TGG 0.389861 1_3:-60614744 Msa0130430:CDS
CCCCACCATACTCTTGTTGT+TGG 0.395076 1_3:+60613721 None:intergenic
GGAATAAACTCTTCTAAAAC+AGG 0.409660 1_3:+60614886 None:intergenic
TTTGTCCAACAACAAGAGTA+TGG 0.414336 1_3:-60613726 Msa0130430:CDS
ATTATTACCTCTTCAGATGA+AGG 0.417768 1_3:+60614712 None:intergenic
GTAGCTTCATCAACAACAAC+AGG 0.429695 1_3:-60613699 Msa0130430:CDS
TGCTCAAACCTCTTGAACTC+TGG 0.432408 1_3:+60613597 None:intergenic
GCAGCGACGGTGCTGGTCGC+AGG 0.434166 1_3:-60614329 Msa0130430:CDS
GTTTATTCCAATTAAGAAAA+GGG 0.437351 1_3:-60614872 Msa0130430:CDS
GTTGCACAAGCGATTCTTGA+AGG 0.440339 1_3:-60614305 Msa0130430:CDS
GAATGAAGGAGAAACAAAGA+AGG 0.444900 1_3:+60615422 None:intergenic
AGTTTATTCCAATTAAGAAA+AGG 0.446516 1_3:-60614873 Msa0130430:CDS
ACTCTATCTTCTTTATGGAA+TGG 0.449526 1_3:+60614490 None:intergenic
GCTTGTCGACAACAATTGTC+TGG 0.459321 1_3:-60614976 Msa0130430:CDS
CACAATGCAGCGTTTCAACA+TGG 0.460209 1_3:-60615223 Msa0130430:exon
CATCAAAAGAGACGAGAAAG+AGG 0.461312 1_3:-60614362 Msa0130430:CDS
TTGAAGGCGCTTCAGCAACT+TGG 0.469776 1_3:-60614289 Msa0130430:CDS
GAGACAGTTCGCGAAGAACT+CGG 0.475399 1_3:+60615451 None:intergenic
TATCGATGAAGAAAGAATAT+GGG 0.478424 1_3:+60615332 None:intergenic
AGAGAGGTAATGAATGTTGA+TGG 0.478733 1_3:-60614123 Msa0130430:CDS
GCATTCAATCTCAGATGAAA+GGG 0.480171 1_3:-60613577 Msa0130430:CDS
AGGTGCTGCTGTTTGTGAAT+TGG 0.480961 1_3:+60613770 None:intergenic
CTCTCTGATTTGCTTTGGTG+TGG 0.488332 1_3:+60614140 None:intergenic
GTGTTGGAATTGAAGAGAAA+TGG 0.488831 1_3:-60614535 Msa0130430:CDS
ACAACTGAGTATAATTTGAA+TGG 0.489356 1_3:-60614949 Msa0130430:CDS
TCAATAACCAGGGGAAGTAT+TGG 0.491273 1_3:+60613488 None:intergenic
TTGGTCTTCTAGTATGCAAC+CGG 0.498211 1_3:+60613814 None:intergenic
ACAAGTGAATTGTTAAGTAA+AGG 0.498649 1_3:-60614457 Msa0130430:CDS
AGACAGTTCGCGAAGAACTC+GGG 0.499976 1_3:+60615452 None:intergenic
ATGTTGCCTACAAGGACAAA+AGG 0.503411 1_3:+60613750 None:intergenic
AAGGCGCTTCAGCAACTTGG+TGG 0.504237 1_3:-60614286 Msa0130430:CDS
ACTTGAGGATGTGTGGCTAC+TGG 0.518302 1_3:+60613636 None:intergenic
TTCTTAATTGTAGCAACTTG+AGG 0.518381 1_3:+60613621 None:intergenic
AGCATTCAATCTCAGATGAA+AGG 0.522044 1_3:-60613578 Msa0130430:CDS
AAGAGAAATGGAAGTGGTGG+TGG 0.523432 1_3:-60614523 Msa0130430:CDS
TGTGTAGAGGATGAAGATGT+AGG 0.529070 1_3:+60613519 None:intergenic
AATGAAGGAGAAACAAAGAA+GGG 0.534302 1_3:+60615423 None:intergenic
TTAAGAAACCAGAGTTCAAG+AGG 0.534779 1_3:-60613605 Msa0130430:CDS
TCCAACAACAAGAGTATGGT+GGG 0.538170 1_3:-60613722 Msa0130430:CDS
AGAGAAAGCAGCGACGGTGC+TGG 0.540249 1_3:-60614336 Msa0130430:CDS
AGAACTCACGGCAGCTACAC+CGG 0.545612 1_3:+60614420 None:intergenic
GTAACGAGTTCTAACGAAAG+AGG 0.565892 1_3:+60615132 None:intergenic
GGCAGCTACACCGGTCGAAG+AGG 0.574491 1_3:+60614429 None:intergenic
AAAATTAAAACTCAATAACC+AGG 0.575545 1_3:+60613477 None:intergenic
ATAATCGATTCTGAAGAGAA+TGG 0.575641 1_3:+60615276 None:intergenic
ATAATAAGAAGAAATCTGAC+TGG 0.576819 1_3:-60614765 Msa0130430:CDS
AGGAAAAGAGAAAGCAGCGA+CGG 0.577313 1_3:-60614342 Msa0130430:CDS
ACTACTACCAATACTTCCCC+TGG 0.577357 1_3:-60613495 Msa0130430:CDS
ACAATGCAGCGTTTCAACAT+GGG 0.578601 1_3:-60615222 Msa0130430:CDS
TAAGAAAACAGTGCCTGTGT+TGG 0.581215 1_3:-60614551 Msa0130430:CDS
TTCAGATCCTTCATCTGAAG+AGG 0.584122 1_3:-60614719 Msa0130430:intron
AAAATGGTTTATGTAAGAAG+AGG 0.585452 1_3:+60615252 None:intergenic
AAAGGACAACCCTCTTCGAC+CGG 0.587220 1_3:-60614439 Msa0130430:CDS
AAATTAAAACTCAATAACCA+GGG 0.590216 1_3:+60613478 None:intergenic
GCAGCTACACCGGTCGAAGA+GGG 0.597437 1_3:+60614430 None:intergenic
AATCACATACAACATAAATG+AGG 0.600136 1_3:+60613362 None:intergenic
TTTCTCTTCAATTCCAACAC+AGG 0.600323 1_3:+60614538 None:intergenic
CTTGTTCTAAAGAGATAACA+TGG 0.602698 1_3:+60613262 None:intergenic
AACAGGGGAAATGACAAAAG+TGG 0.604173 1_3:-60613682 Msa0130430:CDS
ATTGGTAGTAGTATGTGTAG+AGG 0.610237 1_3:+60613506 None:intergenic
AATGTCACCAGTAACAATGT+TGG 0.610482 1_3:-60614388 Msa0130430:CDS
GTCCAACAACAAGAGTATGG+TGG 0.618792 1_3:-60613723 Msa0130430:CDS
GAACAGACAACATCAACAGA+TGG 0.623810 1_3:-60614910 Msa0130430:CDS
ATTAGCCGCATTAGAACTCA+CGG 0.629576 1_3:+60614408 None:intergenic
TCGTTAGAACTCGTTACACA+AGG 0.638093 1_3:-60615126 Msa0130430:intron
GAAAGGGGTAATAACAGTGA+AGG 0.640994 1_3:-60613561 Msa0130430:CDS
TTGAAGAGAAATGGAAGTGG+TGG 0.651388 1_3:-60614526 Msa0130430:CDS
CATTCAATCTCAGATGAAAG+GGG 0.655574 1_3:-60613576 Msa0130430:CDS
ACTGGTGCATAGATTCCAGA+AGG 0.656305 1_3:+60613654 None:intergenic
GTTGAAACGCTGCATTGTGA+AGG 0.656785 1_3:+60615227 None:intergenic
AGCTGCCGTGAGTTCTAATG+CGG 0.671481 1_3:-60614413 Msa0130430:CDS
TGTAGCAACTTGAGGATGTG+TGG 0.683531 1_3:+60613629 None:intergenic
GAATTGAAGAGAAATGGAAG+TGG 0.689165 1_3:-60614529 Msa0130430:CDS
TAGCTTCATCAACAACAACA+GGG 0.693117 1_3:-60613698 Msa0130430:CDS
AATTAAAACTCAATAACCAG+GGG 0.700665 1_3:+60613479 None:intergenic
CCAACAACAAGAGTATGGTG+GGG 0.702776 1_3:-60613721 Msa0130430:CDS
AGCTTCATCAACAACAACAG+GGG 0.709783 1_3:-60613697 Msa0130430:CDS
CACACCAAAGCAAATCAGAG+AGG 0.720773 1_3:-60614139 Msa0130430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATAAAAAAAAAAGG+GGG + chr1_3:60613635-60613654 None:intergenic 10.0%
!! CATATATATAAAAAAAAAAG+GGG + chr1_3:60613636-60613655 None:intergenic 10.0%
!!! AAAAAAATTGATTTTAATTG+AGG + chr1_3:60614867-60614886 None:intergenic 10.0%
!! ATATATATAAAAAAAAAAGG+GGG + chr1_3:60613635-60613654 None:intergenic 10.0%
!! CATATATATAAAAAAAAAAG+GGG + chr1_3:60613636-60613655 None:intergenic 10.0%
!!! AAAAAAATTGATTTTAATTG+AGG + chr1_3:60614867-60614886 None:intergenic 10.0%
!!! AAGTTTGTATTTTTTTTATC+TGG - chr1_3:60613667-60613686 Msa0130430:CDS 15.0%
!!! AGTTTGTATTTTTTTTATCT+GGG - chr1_3:60613668-60613687 Msa0130430:CDS 15.0%
!!! AAAATAATTTTGGATGTTTT+TGG - chr1_3:60613707-60613726 Msa0130430:CDS 15.0%
!!! TTTACTTTTTGTTAAACTAA+AGG - chr1_3:60614084-60614103 Msa0130430:intron 15.0%
!!! TTACTTTTTGTTAAACTAAA+GGG - chr1_3:60614085-60614104 Msa0130430:intron 15.0%
!! AATAACATTATACAACAAAA+AGG + chr1_3:60615342-60615361 None:intergenic 15.0%
!!! AAGTTTGTATTTTTTTTATC+TGG - chr1_3:60613667-60613686 Msa0130430:CDS 15.0%
!!! AGTTTGTATTTTTTTTATCT+GGG - chr1_3:60613668-60613687 Msa0130430:CDS 15.0%
!!! AAAATAATTTTGGATGTTTT+TGG - chr1_3:60613707-60613726 Msa0130430:CDS 15.0%
!!! TTTACTTTTTGTTAAACTAA+AGG - chr1_3:60614084-60614103 Msa0130430:intron 15.0%
!!! TTACTTTTTGTTAAACTAAA+GGG - chr1_3:60614085-60614104 Msa0130430:intron 15.0%
!! AATAACATTATACAACAAAA+AGG + chr1_3:60615342-60615361 None:intergenic 15.0%
!! AAAAGAAAGAAAAAGAATGA+AGG + chr1_3:60613320-60613339 None:intergenic 20.0%
!! AGTTTATTCCAATTAAGAAA+AGG - chr1_3:60613852-60613871 Msa0130430:intron 20.0%
!! GTTTATTCCAATTAAGAAAA+GGG - chr1_3:60613853-60613872 Msa0130430:intron 20.0%
!!! TTTTTCACAAAAACAAAACA+AGG + chr1_3:60614138-60614157 None:intergenic 20.0%
!!! GTTTTTGTGAAAAATTGTTT+AGG - chr1_3:60614144-60614163 Msa0130430:CDS 20.0%
!! AAATTAAAACTCAATAACCA+GGG + chr1_3:60615250-60615269 None:intergenic 20.0%
!! AAAATTAAAACTCAATAACC+AGG + chr1_3:60615251-60615270 None:intergenic 20.0%
!! AAAAGAAAGAAAAAGAATGA+AGG + chr1_3:60613320-60613339 None:intergenic 20.0%
!! AGTTTATTCCAATTAAGAAA+AGG - chr1_3:60613852-60613871 Msa0130430:intron 20.0%
!! GTTTATTCCAATTAAGAAAA+GGG - chr1_3:60613853-60613872 Msa0130430:intron 20.0%
!!! TTTTTCACAAAAACAAAACA+AGG + chr1_3:60614138-60614157 None:intergenic 20.0%
!!! GTTTTTGTGAAAAATTGTTT+AGG - chr1_3:60614144-60614163 Msa0130430:CDS 20.0%
!! AAATTAAAACTCAATAACCA+GGG + chr1_3:60615250-60615269 None:intergenic 20.0%
!! AAAATTAAAACTCAATAACC+AGG + chr1_3:60615251-60615270 None:intergenic 20.0%
! TCTGAAGAAGAATCAAAAAT+TGG + chr1_3:60613372-60613391 None:intergenic 25.0%
! TATCGATGAAGAAAGAATAT+GGG + chr1_3:60613396-60613415 None:intergenic 25.0%
! ATATCGATGAAGAAAGAATA+TGG + chr1_3:60613397-60613416 None:intergenic 25.0%
! AAAATGGTTTATGTAAGAAG+AGG + chr1_3:60613476-60613495 None:intergenic 25.0%
! ACAACTGAGTATAATTTGAA+TGG - chr1_3:60613776-60613795 Msa0130430:CDS 25.0%
! ATAATAAGAAGAAATCTGAC+TGG - chr1_3:60613960-60613979 Msa0130430:intron 25.0%
! TGTTAACTCTATCTTCTTTA+TGG + chr1_3:60614243-60614262 None:intergenic 25.0%
! ACAAGTGAATTGTTAAGTAA+AGG - chr1_3:60614268-60614287 Msa0130430:intron 25.0%
! AAATTGACAACAAAAGAGTT+GGG + chr1_3:60614683-60614702 None:intergenic 25.0%
! AAAATTGACAACAAAAGAGT+TGG + chr1_3:60614684-60614703 None:intergenic 25.0%
! AATTAAAACTCAATAACCAG+GGG + chr1_3:60615249-60615268 None:intergenic 25.0%
! AATCACATACAACATAAATG+AGG + chr1_3:60615366-60615385 None:intergenic 25.0%
! TCTGAAGAAGAATCAAAAAT+TGG + chr1_3:60613372-60613391 None:intergenic 25.0%
! TATCGATGAAGAAAGAATAT+GGG + chr1_3:60613396-60613415 None:intergenic 25.0%
! ATATCGATGAAGAAAGAATA+TGG + chr1_3:60613397-60613416 None:intergenic 25.0%
! AAAATGGTTTATGTAAGAAG+AGG + chr1_3:60613476-60613495 None:intergenic 25.0%
! ACAACTGAGTATAATTTGAA+TGG - chr1_3:60613776-60613795 Msa0130430:CDS 25.0%
! ATAATAAGAAGAAATCTGAC+TGG - chr1_3:60613960-60613979 Msa0130430:intron 25.0%
! TGTTAACTCTATCTTCTTTA+TGG + chr1_3:60614243-60614262 None:intergenic 25.0%
! ACAAGTGAATTGTTAAGTAA+AGG - chr1_3:60614268-60614287 Msa0130430:intron 25.0%
! AAATTGACAACAAAAGAGTT+GGG + chr1_3:60614683-60614702 None:intergenic 25.0%
! AAAATTGACAACAAAAGAGT+TGG + chr1_3:60614684-60614703 None:intergenic 25.0%
! AATTAAAACTCAATAACCAG+GGG + chr1_3:60615249-60615268 None:intergenic 25.0%
! AATCACATACAACATAAATG+AGG + chr1_3:60615366-60615385 None:intergenic 25.0%
AATGAAGGAGAAACAAAGAA+GGG + chr1_3:60613305-60613324 None:intergenic 30.0%
! ATAATCGATTCTGAAGAGAA+TGG + chr1_3:60613452-60613471 None:intergenic 30.0%
!! GGAATAAACTCTTCTAAAAC+AGG + chr1_3:60613842-60613861 None:intergenic 30.0%
ATTATTACCTCTTCAGATGA+AGG + chr1_3:60614016-60614035 None:intergenic 30.0%
ACTCTATCTTCTTTATGGAA+TGG + chr1_3:60614238-60614257 None:intergenic 30.0%
!!! GTTTTTTGCTTCTGTTCTAT+AGG - chr1_3:60614560-60614579 Msa0130430:CDS 30.0%
!!! TTTTGACTTCATCATTTGTG+AGG + chr1_3:60614628-60614647 None:intergenic 30.0%
CATATCTACAAACCTGTAAA+TGG + chr1_3:60614652-60614671 None:intergenic 30.0%
GAAATCCTATGCAATTGAAA+GGG + chr1_3:60614788-60614807 None:intergenic 30.0%
TGAAATCCTATGCAATTGAA+AGG + chr1_3:60614789-60614808 None:intergenic 30.0%
! CTTTCGTTATTTGTTGAACT+TGG + chr1_3:60614933-60614952 None:intergenic 30.0%
TTCTTAATTGTAGCAACTTG+AGG + chr1_3:60615107-60615126 None:intergenic 30.0%
!!! TAAGTCACACCTTTTTTAGA+TGG - chr1_3:60615434-60615453 Msa0130430:five_prime_UTR 30.0%
TGGTAGTATCCATCTAAAAA+AGG + chr1_3:60615446-60615465 None:intergenic 30.0%
AATGAAGGAGAAACAAAGAA+GGG + chr1_3:60613305-60613324 None:intergenic 30.0%
! ATAATCGATTCTGAAGAGAA+TGG + chr1_3:60613452-60613471 None:intergenic 30.0%
!! GGAATAAACTCTTCTAAAAC+AGG + chr1_3:60613842-60613861 None:intergenic 30.0%
ATTATTACCTCTTCAGATGA+AGG + chr1_3:60614016-60614035 None:intergenic 30.0%
ACTCTATCTTCTTTATGGAA+TGG + chr1_3:60614238-60614257 None:intergenic 30.0%
!!! GTTTTTTGCTTCTGTTCTAT+AGG - chr1_3:60614560-60614579 Msa0130430:CDS 30.0%
!!! TTTTGACTTCATCATTTGTG+AGG + chr1_3:60614628-60614647 None:intergenic 30.0%
CATATCTACAAACCTGTAAA+TGG + chr1_3:60614652-60614671 None:intergenic 30.0%
GAAATCCTATGCAATTGAAA+GGG + chr1_3:60614788-60614807 None:intergenic 30.0%
TGAAATCCTATGCAATTGAA+AGG + chr1_3:60614789-60614808 None:intergenic 30.0%
! CTTTCGTTATTTGTTGAACT+TGG + chr1_3:60614933-60614952 None:intergenic 30.0%
TTCTTAATTGTAGCAACTTG+AGG + chr1_3:60615107-60615126 None:intergenic 30.0%
!!! TAAGTCACACCTTTTTTAGA+TGG - chr1_3:60615434-60615453 Msa0130430:five_prime_UTR 30.0%
TGGTAGTATCCATCTAAAAA+AGG + chr1_3:60615446-60615465 None:intergenic 30.0%
GAATGAAGGAGAAACAAAGA+AGG + chr1_3:60613306-60613325 None:intergenic 35.0%
AACGAAAGAGGAAGTTCTTT+AGG + chr1_3:60613584-60613603 None:intergenic 35.0%
! GAAGAAGCCCTTTTCTTAAT+TGG + chr1_3:60613863-60613882 None:intergenic 35.0%
TTTCTCTTCAATTCCAACAC+AGG + chr1_3:60614190-60614209 None:intergenic 35.0%
GTGTTGGAATTGAAGAGAAA+TGG - chr1_3:60614190-60614209 Msa0130430:intron 35.0%
GAATTGAAGAGAAATGGAAG+TGG - chr1_3:60614196-60614215 Msa0130430:intron 35.0%
AATGTCACCAGTAACAATGT+TGG - chr1_3:60614337-60614356 Msa0130430:CDS 35.0%
!! ATTACCTCTCTGATTTGCTT+TGG + chr1_3:60614593-60614612 None:intergenic 35.0%
AGAGAGGTAATGAATGTTGA+TGG - chr1_3:60614602-60614621 Msa0130430:intron 35.0%
TGAAGTCAAAAGCCATTTAC+AGG - chr1_3:60614637-60614656 Msa0130430:intron 35.0%
TTAGTCCCTTTCAATTGCAT+AGG - chr1_3:60614780-60614799 Msa0130430:CDS 35.0%
! TCTGTTTTGCACAGAAATAC+CGG - chr1_3:60614892-60614911 Msa0130430:CDS 35.0%
TTTGTCCAACAACAAGAGTA+TGG - chr1_3:60614999-60615018 Msa0130430:intron 35.0%
TAGCTTCATCAACAACAACA+GGG - chr1_3:60615027-60615046 Msa0130430:intron 35.0%
TTAAGAAACCAGAGTTCAAG+AGG - chr1_3:60615120-60615139 Msa0130430:intron 35.0%
AGCATTCAATCTCAGATGAA+AGG - chr1_3:60615147-60615166 Msa0130430:CDS 35.0%
GCATTCAATCTCAGATGAAA+GGG - chr1_3:60615148-60615167 Msa0130430:CDS 35.0%
CATTCAATCTCAGATGAAAG+GGG - chr1_3:60615149-60615168 Msa0130430:CDS 35.0%
! ATTGGTAGTAGTATGTGTAG+AGG + chr1_3:60615222-60615241 None:intergenic 35.0%
GAATGAAGGAGAAACAAAGA+AGG + chr1_3:60613306-60613325 None:intergenic 35.0%
AACGAAAGAGGAAGTTCTTT+AGG + chr1_3:60613584-60613603 None:intergenic 35.0%
! GAAGAAGCCCTTTTCTTAAT+TGG + chr1_3:60613863-60613882 None:intergenic 35.0%
TTTCTCTTCAATTCCAACAC+AGG + chr1_3:60614190-60614209 None:intergenic 35.0%
GTGTTGGAATTGAAGAGAAA+TGG - chr1_3:60614190-60614209 Msa0130430:intron 35.0%
GAATTGAAGAGAAATGGAAG+TGG - chr1_3:60614196-60614215 Msa0130430:intron 35.0%
AATGTCACCAGTAACAATGT+TGG - chr1_3:60614337-60614356 Msa0130430:CDS 35.0%
!! ATTACCTCTCTGATTTGCTT+TGG + chr1_3:60614593-60614612 None:intergenic 35.0%
AGAGAGGTAATGAATGTTGA+TGG - chr1_3:60614602-60614621 Msa0130430:intron 35.0%
TGAAGTCAAAAGCCATTTAC+AGG - chr1_3:60614637-60614656 Msa0130430:intron 35.0%
TTAGTCCCTTTCAATTGCAT+AGG - chr1_3:60614780-60614799 Msa0130430:CDS 35.0%
! TCTGTTTTGCACAGAAATAC+CGG - chr1_3:60614892-60614911 Msa0130430:CDS 35.0%
TTTGTCCAACAACAAGAGTA+TGG - chr1_3:60614999-60615018 Msa0130430:intron 35.0%
TAGCTTCATCAACAACAACA+GGG - chr1_3:60615027-60615046 Msa0130430:intron 35.0%
TTAAGAAACCAGAGTTCAAG+AGG - chr1_3:60615120-60615139 Msa0130430:intron 35.0%
AGCATTCAATCTCAGATGAA+AGG - chr1_3:60615147-60615166 Msa0130430:CDS 35.0%
GCATTCAATCTCAGATGAAA+GGG - chr1_3:60615148-60615167 Msa0130430:CDS 35.0%
CATTCAATCTCAGATGAAAG+GGG - chr1_3:60615149-60615168 Msa0130430:CDS 35.0%
! ATTGGTAGTAGTATGTGTAG+AGG + chr1_3:60615222-60615241 None:intergenic 35.0%
CTGCATTGTGAAGGCAAAAA+TGG + chr1_3:60613492-60613511 None:intergenic 40.0%
ACAATGCAGCGTTTCAACAT+GGG - chr1_3:60613503-60613522 Msa0130430:CDS 40.0%
GTCGTTCTTGTTCTAATGCT+TGG + chr1_3:60613544-60613563 None:intergenic 40.0%
! GTAACGAGTTCTAACGAAAG+AGG + chr1_3:60613596-60613615 None:intergenic 40.0%
TCGTTAGAACTCGTTACACA+AGG - chr1_3:60613599-60613618 Msa0130430:CDS 40.0%
GAACAGACAACATCAACAGA+TGG - chr1_3:60613815-60613834 Msa0130430:CDS 40.0%
GGCTTAGATCTGTTCAGTTA+TGG - chr1_3:60613981-60614000 Msa0130430:intron 40.0%
TTCAGATCCTTCATCTGAAG+AGG - chr1_3:60614006-60614025 Msa0130430:intron 40.0%
TAAGAAAACAGTGCCTGTGT+TGG - chr1_3:60614174-60614193 Msa0130430:intron 40.0%
TTGAAGAGAAATGGAAGTGG+TGG - chr1_3:60614199-60614218 Msa0130430:intron 40.0%
ATTAGCCGCATTAGAACTCA+CGG + chr1_3:60614320-60614339 None:intergenic 40.0%
GATGTCTCCAACATTGTTAC+TGG + chr1_3:60614347-60614366 None:intergenic 40.0%
CATCAAAAGAGACGAGAAAG+AGG - chr1_3:60614363-60614382 Msa0130430:CDS 40.0%
! TTGGTCTTCTAGTATGCAAC+CGG + chr1_3:60614914-60614933 None:intergenic 40.0%
ATGTTGCCTACAAGGACAAA+AGG + chr1_3:60614978-60614997 None:intergenic 40.0%
GGACAAAAATGTTGCCTACA+AGG + chr1_3:60614986-60615005 None:intergenic 40.0%
! TCCAACAACAAGAGTATGGT+GGG - chr1_3:60615003-60615022 Msa0130430:intron 40.0%
GTAGCTTCATCAACAACAAC+AGG - chr1_3:60615026-60615045 Msa0130430:intron 40.0%
AGCTTCATCAACAACAACAG+GGG - chr1_3:60615028-60615047 Msa0130430:intron 40.0%
AACAGGGGAAATGACAAAAG+TGG - chr1_3:60615043-60615062 Msa0130430:intron 40.0%
GAAAGGGGTAATAACAGTGA+AGG - chr1_3:60615164-60615183 Msa0130430:CDS 40.0%
TGTGTAGAGGATGAAGATGT+AGG + chr1_3:60615209-60615228 None:intergenic 40.0%
! TCAATAACCAGGGGAAGTAT+TGG + chr1_3:60615240-60615259 None:intergenic 40.0%
CTGCATTGTGAAGGCAAAAA+TGG + chr1_3:60613492-60613511 None:intergenic 40.0%
ACAATGCAGCGTTTCAACAT+GGG - chr1_3:60613503-60613522 Msa0130430:CDS 40.0%
GTCGTTCTTGTTCTAATGCT+TGG + chr1_3:60613544-60613563 None:intergenic 40.0%
! GTAACGAGTTCTAACGAAAG+AGG + chr1_3:60613596-60613615 None:intergenic 40.0%
TCGTTAGAACTCGTTACACA+AGG - chr1_3:60613599-60613618 Msa0130430:CDS 40.0%
GAACAGACAACATCAACAGA+TGG - chr1_3:60613815-60613834 Msa0130430:CDS 40.0%
GGCTTAGATCTGTTCAGTTA+TGG - chr1_3:60613981-60614000 Msa0130430:intron 40.0%
TTCAGATCCTTCATCTGAAG+AGG - chr1_3:60614006-60614025 Msa0130430:intron 40.0%
TAAGAAAACAGTGCCTGTGT+TGG - chr1_3:60614174-60614193 Msa0130430:intron 40.0%
TTGAAGAGAAATGGAAGTGG+TGG - chr1_3:60614199-60614218 Msa0130430:intron 40.0%
ATTAGCCGCATTAGAACTCA+CGG + chr1_3:60614320-60614339 None:intergenic 40.0%
GATGTCTCCAACATTGTTAC+TGG + chr1_3:60614347-60614366 None:intergenic 40.0%
CATCAAAAGAGACGAGAAAG+AGG - chr1_3:60614363-60614382 Msa0130430:CDS 40.0%
! TTGGTCTTCTAGTATGCAAC+CGG + chr1_3:60614914-60614933 None:intergenic 40.0%
ATGTTGCCTACAAGGACAAA+AGG + chr1_3:60614978-60614997 None:intergenic 40.0%
GGACAAAAATGTTGCCTACA+AGG + chr1_3:60614986-60615005 None:intergenic 40.0%
! TCCAACAACAAGAGTATGGT+GGG - chr1_3:60615003-60615022 Msa0130430:intron 40.0%
GTAGCTTCATCAACAACAAC+AGG - chr1_3:60615026-60615045 Msa0130430:intron 40.0%
AGCTTCATCAACAACAACAG+GGG - chr1_3:60615028-60615047 Msa0130430:intron 40.0%
AACAGGGGAAATGACAAAAG+TGG - chr1_3:60615043-60615062 Msa0130430:intron 40.0%
GAAAGGGGTAATAACAGTGA+AGG - chr1_3:60615164-60615183 Msa0130430:CDS 40.0%
TGTGTAGAGGATGAAGATGT+AGG + chr1_3:60615209-60615228 None:intergenic 40.0%
! TCAATAACCAGGGGAAGTAT+TGG + chr1_3:60615240-60615259 None:intergenic 40.0%
! CTGAAGAGAATGGCGTTTTG+TGG + chr1_3:60613442-60613461 None:intergenic 45.0%
GTTGAAACGCTGCATTGTGA+AGG + chr1_3:60613501-60613520 None:intergenic 45.0%
CACAATGCAGCGTTTCAACA+TGG - chr1_3:60613502-60613521 Msa0130430:CDS 45.0%
GCTTGTCGACAACAATTGTC+TGG - chr1_3:60613749-60613768 Msa0130430:CDS 45.0%
AAGAGAAATGGAAGTGGTGG+TGG - chr1_3:60614202-60614221 Msa0130430:intron 45.0%
AGGAAAAGAGAAAGCAGCGA+CGG - chr1_3:60614383-60614402 Msa0130430:CDS 45.0%
GTTGCACAAGCGATTCTTGA+AGG - chr1_3:60614420-60614439 Msa0130430:CDS 45.0%
!! CTCTCTGATTTGCTTTGGTG+TGG + chr1_3:60614588-60614607 None:intergenic 45.0%
CACACCAAAGCAAATCAGAG+AGG - chr1_3:60614586-60614605 Msa0130430:intron 45.0%
!! AGGTGCTGCTGTTTGTGAAT+TGG + chr1_3:60614958-60614977 None:intergenic 45.0%
! GTCCAACAACAAGAGTATGG+TGG - chr1_3:60615002-60615021 Msa0130430:intron 45.0%
! CCAACAACAAGAGTATGGTG+GGG - chr1_3:60615004-60615023 Msa0130430:intron 45.0%
ACAAAAGTGGTTGCACCTTC+TGG - chr1_3:60615056-60615075 Msa0130430:intron 45.0%
ACTGGTGCATAGATTCCAGA+AGG + chr1_3:60615074-60615093 None:intergenic 45.0%
TGTAGCAACTTGAGGATGTG+TGG + chr1_3:60615099-60615118 None:intergenic 45.0%
TGCTCAAACCTCTTGAACTC+TGG + chr1_3:60615131-60615150 None:intergenic 45.0%
ACTACTACCAATACTTCCCC+TGG - chr1_3:60615230-60615249 Msa0130430:exon 45.0%
! CTGAAGAGAATGGCGTTTTG+TGG + chr1_3:60613442-60613461 None:intergenic 45.0%
GTTGAAACGCTGCATTGTGA+AGG + chr1_3:60613501-60613520 None:intergenic 45.0%
CACAATGCAGCGTTTCAACA+TGG - chr1_3:60613502-60613521 Msa0130430:CDS 45.0%
GCTTGTCGACAACAATTGTC+TGG - chr1_3:60613749-60613768 Msa0130430:CDS 45.0%
AAGAGAAATGGAAGTGGTGG+TGG - chr1_3:60614202-60614221 Msa0130430:intron 45.0%
AGGAAAAGAGAAAGCAGCGA+CGG - chr1_3:60614383-60614402 Msa0130430:CDS 45.0%
GTTGCACAAGCGATTCTTGA+AGG - chr1_3:60614420-60614439 Msa0130430:CDS 45.0%
!! CTCTCTGATTTGCTTTGGTG+TGG + chr1_3:60614588-60614607 None:intergenic 45.0%
CACACCAAAGCAAATCAGAG+AGG - chr1_3:60614586-60614605 Msa0130430:intron 45.0%
!! AGGTGCTGCTGTTTGTGAAT+TGG + chr1_3:60614958-60614977 None:intergenic 45.0%
! GTCCAACAACAAGAGTATGG+TGG - chr1_3:60615002-60615021 Msa0130430:intron 45.0%
! CCAACAACAAGAGTATGGTG+GGG - chr1_3:60615004-60615023 Msa0130430:intron 45.0%
ACAAAAGTGGTTGCACCTTC+TGG - chr1_3:60615056-60615075 Msa0130430:intron 45.0%
ACTGGTGCATAGATTCCAGA+AGG + chr1_3:60615074-60615093 None:intergenic 45.0%
TGTAGCAACTTGAGGATGTG+TGG + chr1_3:60615099-60615118 None:intergenic 45.0%
TGCTCAAACCTCTTGAACTC+TGG + chr1_3:60615131-60615150 None:intergenic 45.0%
ACTACTACCAATACTTCCCC+TGG - chr1_3:60615230-60615249 Msa0130430:exon 45.0%
!! TCATATATATAAAAAAAAAA+GGG + chr1_3:60613637-60613656 None:intergenic 5.0%
!! ATCATATATATAAAAAAAAA+AGG + chr1_3:60613638-60613657 None:intergenic 5.0%
!!! TTATTTTTGAAAAATAATTT+TGG - chr1_3:60613697-60613716 Msa0130430:CDS 5.0%
!! TCATATATATAAAAAAAAAA+GGG + chr1_3:60613637-60613656 None:intergenic 5.0%
!! ATCATATATATAAAAAAAAA+AGG + chr1_3:60613638-60613657 None:intergenic 5.0%
!!! TTATTTTTGAAAAATAATTT+TGG - chr1_3:60613697-60613716 Msa0130430:CDS 5.0%
AGACAGTTCGCGAAGAACTC+GGG + chr1_3:60613276-60613295 None:intergenic 50.0%
GAGACAGTTCGCGAAGAACT+CGG + chr1_3:60613277-60613296 None:intergenic 50.0%
GAAGCAAGAGAGAGAGAGTG+GGG + chr1_3:60613420-60613439 None:intergenic 50.0%
GGAAGCAAGAGAGAGAGAGT+GGG + chr1_3:60613421-60613440 None:intergenic 50.0%
TGGAAGCAAGAGAGAGAGAG+TGG + chr1_3:60613422-60613441 None:intergenic 50.0%
AAAGGACAACCCTCTTCGAC+CGG - chr1_3:60614286-60614305 Msa0130430:CDS 50.0%
! AGCTGCCGTGAGTTCTAATG+CGG - chr1_3:60614312-60614331 Msa0130430:CDS 50.0%
!! TTGAAGGCGCTTCAGCAACT+TGG - chr1_3:60614436-60614455 Msa0130430:CDS 50.0%
! GCAGCACCTTTTGTCCTTGT+AGG - chr1_3:60614969-60614988 Msa0130430:CDS 50.0%
! CCCCACCATACTCTTGTTGT+TGG + chr1_3:60615007-60615026 None:intergenic 50.0%
ACTTGAGGATGTGTGGCTAC+TGG + chr1_3:60615092-60615111 None:intergenic 50.0%
AGACAGTTCGCGAAGAACTC+GGG + chr1_3:60613276-60613295 None:intergenic 50.0%
GAGACAGTTCGCGAAGAACT+CGG + chr1_3:60613277-60613296 None:intergenic 50.0%
GAAGCAAGAGAGAGAGAGTG+GGG + chr1_3:60613420-60613439 None:intergenic 50.0%
GGAAGCAAGAGAGAGAGAGT+GGG + chr1_3:60613421-60613440 None:intergenic 50.0%
TGGAAGCAAGAGAGAGAGAG+TGG + chr1_3:60613422-60613441 None:intergenic 50.0%
AAAGGACAACCCTCTTCGAC+CGG - chr1_3:60614286-60614305 Msa0130430:CDS 50.0%
! AGCTGCCGTGAGTTCTAATG+CGG - chr1_3:60614312-60614331 Msa0130430:CDS 50.0%
!! TTGAAGGCGCTTCAGCAACT+TGG - chr1_3:60614436-60614455 Msa0130430:CDS 50.0%
! GCAGCACCTTTTGTCCTTGT+AGG - chr1_3:60614969-60614988 Msa0130430:CDS 50.0%
! CCCCACCATACTCTTGTTGT+TGG + chr1_3:60615007-60615026 None:intergenic 50.0%
ACTTGAGGATGTGTGGCTAC+TGG + chr1_3:60615092-60615111 None:intergenic 50.0%
AGAACTCACGGCAGCTACAC+CGG + chr1_3:60614308-60614327 None:intergenic 55.0%
! AAGGCGCTTCAGCAACTTGG+TGG - chr1_3:60614439-60614458 Msa0130430:CDS 55.0%
GACAGTTCGCGAAGAACTCG+GGG + chr1_3:60613275-60613294 None:intergenic 55.0%
AGAACTCACGGCAGCTACAC+CGG + chr1_3:60614308-60614327 None:intergenic 55.0%
! AAGGCGCTTCAGCAACTTGG+TGG - chr1_3:60614439-60614458 Msa0130430:CDS 55.0%
GCAGCTACACCGGTCGAAGA+GGG + chr1_3:60614298-60614317 None:intergenic 60.0%
AGAGAAAGCAGCGACGGTGC+TGG - chr1_3:60614389-60614408 Msa0130430:CDS 60.0%
GCAGCTACACCGGTCGAAGA+GGG + chr1_3:60614298-60614317 None:intergenic 60.0%
AGAGAAAGCAGCGACGGTGC+TGG - chr1_3:60614389-60614408 Msa0130430:CDS 60.0%
GGCAGCTACACCGGTCGAAG+AGG + chr1_3:60614299-60614318 None:intergenic 65.0%
GGCAGCTACACCGGTCGAAG+AGG + chr1_3:60614299-60614318 None:intergenic 65.0%
!! GCAGCGACGGTGCTGGTCGC+AGG - chr1_3:60614396-60614415 Msa0130430:CDS 75.0%
!! GCAGCGACGGTGCTGGTCGC+AGG - chr1_3:60614396-60614415 Msa0130430:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 60613273 60615474 60613273 ID=Msa0130430;Name=Msa0130430
chr1_3 mRNA 60613273 60615474 60613273 ID=Msa0130430-mRNA-1;Parent=Msa0130430;Name=Msa0130430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=233|1|1|1|1|1|5|215|378
chr1_3 exon 60613273 60613841 60613273 ID=Msa0130430-mRNA-1:exon:20010;Parent=Msa0130430-mRNA-1
chr1_3 exon 60614089 60614165 60614089 ID=Msa0130430-mRNA-1:exon:20009;Parent=Msa0130430-mRNA-1
chr1_3 exon 60614278 60614581 60614278 ID=Msa0130430-mRNA-1:exon:20008;Parent=Msa0130430-mRNA-1
chr1_3 exon 60614720 60615006 60614720 ID=Msa0130430-mRNA-1:exon:20007;Parent=Msa0130430-mRNA-1
chr1_3 exon 60615127 60615474 60615127 ID=Msa0130430-mRNA-1:exon:20006;Parent=Msa0130430-mRNA-1
chr1_3 five_prime_UTR 60615242 60615474 60615242 ID=Msa0130430-mRNA-1:five_prime_utr;Parent=Msa0130430-mRNA-1
chr1_3 CDS 60615127 60615241 60615127 ID=Msa0130430-mRNA-1:cds;Parent=Msa0130430-mRNA-1
chr1_3 CDS 60614720 60615006 60614720 ID=Msa0130430-mRNA-1:cds;Parent=Msa0130430-mRNA-1
chr1_3 CDS 60614278 60614581 60614278 ID=Msa0130430-mRNA-1:cds;Parent=Msa0130430-mRNA-1
chr1_3 CDS 60614089 60614165 60614089 ID=Msa0130430-mRNA-1:cds;Parent=Msa0130430-mRNA-1
chr1_3 CDS 60613488 60613841 60613488 ID=Msa0130430-mRNA-1:cds;Parent=Msa0130430-mRNA-1
chr1_3 three_prime_UTR 60613273 60613487 60613273 ID=Msa0130430-mRNA-1:three_prime_utr;Parent=Msa0130430-mRNA-1
Gene Sequence

>Msa0130430

ATGCAGCGTTTCAACATGGGTTTCTCTGATTATATCCAAGCATTAGAACAAGAACGACGTAAGATTCAAGTCTTTCCTAAAGAACTTCCTCTTTCGTTAGAACTCGTTACACAAGCTATTGAAGCTTGTCGACAACAATTGTCTGGAACAACAACTGAGTATAATTTGAATGGACAATCTGAGTGTTCTGAACAGACAACATCAACAGATGGACCTGTTTTAGAAGAGTTTATTCCAATTAAGAAAAGGGCTTCTTCTTATTCTCAAGAAGTGTTTGATGATGTAGAAGATTATGATCAACATTTTCATCATAAGCAACAAAAACTTTCATTAGATAATAAGAAGAAATCTGACTGGCTTAGATCTGTTCAGTTATGGAATTCAGATCCTTCATCTGAAGAGGATGTTACTAAGAAAACAGTGCCTGTGTTGGAATTGAAGAGAAATGGAAGTGGTGGTGGTGCTTTTCATCCATTCCATAAAGAAGATAGAGTTAACAACAAGACAAGTGAATTGTTAAGTAAAGGACAACCCTCTTCGACCGGTGTAGCTGCCGTGAGTTCTAATGCGGCTAATGTCACCAGTAACAATGTTGGAGACATCAAAAGAGACGAGAAAGAGGAAAAGAGAAAGCAGCGACGGTGCTGGTCGCAGGAGTTGCACAAGCGATTCTTGAAGGCGCTTCAGCAACTTGGTGGTGCAGATTGTGCCACACCAAAGCAAATCAGAGAGGTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGGTTGCATACTAGAAGACCAAGTTCAACAAATAACGAAAGTGCCAATTCACAAACAGCAGCACCTTTTGTCCTTGTAGGCAACATTTTTGTCCAACAACAAGAGTATGGTGGGGTAGCTTCATCAACAACAACAGGGGAAATGACAAAAGTGGTTGCACCTTCTGGAATCTATGCACCAGTAGCCACACATCCTCAAGTTGCTACAATTAAGAAACCAGAGTTCAAGAGGTTTGAGCATTCAATCTCAGATGAAAGGGGTAATAACAGTGAAGGTGCTGTTCATTCAAATTCACCTACATCTTCATCCTCTACACATACTACTACCAATACTTCCCCTGGTTATTGA
Protein sequence

>Msa0130430

MQRFNMGFSDYIQALEQERRKIQVFPKELPLSLELVTQAIEACRQQLSGTTTEYNLNGQSECSEQTTSTDGPVLEEFIPIKKRASSYSQEVFDDVEDYDQHFHHKQQKLSLDNKKKSDWLRSVQLWNSDPSSEEDVTKKTVPVLELKRNGSGGGAFHPFHKEDRVNNKTSELLSKGQPSSTGVAAVSSNAANVTSNNVGDIKRDEKEEKRKQRRCWSQELHKRFLKALQQLGGADCATPKQIREVMNVDGLTNDEVKSHLQKYRLHTRRPSSTNNESANSQTAAPFVLVGNIFVQQQEYGGVASSTTTGEMTKVVAPSGIYAPVATHPQVATIKKPEFKRFEHSISDERGNNSEGAVHSNSPTSSSSTHTTTNTSPGY*