Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037000 | sp|P57720|AROC_ARATH | 74.892 | 231 | 52 | 3 | 1 | 228 | 1 | 228 | 3.69e-116 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037000 | Msa0069320 | 0.855834 | 4.835726e-62 | -8.615850e-47 |
| Msa0037000 | Msa0131190 | 0.845525 | 3.847275e-59 | -8.615850e-47 |
| Msa0037000 | Msa0177110 | 0.821380 | 4.163863e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037000 | MtrunA17_Chr1g0199821 | 85.345 | 232 | 26 | 4 | 1 | 228 | 1 | 228 | 6.94e-133 | 380 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037000 | AT1G48850.2 | 74.892 | 231 | 52 | 3 | 1 | 228 | 1 | 228 | 3.06e-118 | 342 |
| Msa0037000 | AT1G48850.3 | 74.892 | 231 | 52 | 3 | 1 | 228 | 1 | 228 | 3.41e-118 | 342 |
| Msa0037000 | AT1G48850.1 | 74.892 | 231 | 52 | 3 | 1 | 228 | 1 | 228 | 3.75e-117 | 341 |
Find 107 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGTATCAGTCTCCTTTC+TGG | 0.119746 | 1_1:+65886648 | None:intergenic |
| TAACTTCCTTGTTCGCTTCT+TGG | 0.130786 | 1_1:+65888234 | None:intergenic |
| GCGAGATGTCATTAGCTTAT+AGG | 0.246076 | 1_1:-65886349 | Msa0037000:CDS |
| GAGGGATCGGAGATTGGAAT+TGG | 0.269061 | 1_1:+65887831 | None:intergenic |
| AAAGCCACGTGGGCAGTAAC+TGG | 0.271931 | 1_1:-65888123 | Msa0037000:five_prime_UTR |
| TACATATGGGAACCACTTTC+GGG | 0.279701 | 1_1:-65887013 | Msa0037000:CDS |
| TTTGGTCATTGGTCCTTTGC+TGG | 0.289999 | 1_1:+65888156 | None:intergenic |
| CACTTTCGGGTTACAACATA+TGG | 0.302913 | 1_1:-65887000 | Msa0037000:CDS |
| ATGGCTATTGCTATTGCTAT+TGG | 0.307089 | 1_1:+65887927 | None:intergenic |
| CATGTATCAGTCTCCTTTCT+GGG | 0.318592 | 1_1:+65886649 | None:intergenic |
| TCGCAAAAGTTGAATTGAAT+TGG | 0.335467 | 1_1:+65888021 | None:intergenic |
| GTACATATGGGAACCACTTT+CGG | 0.342196 | 1_1:-65887014 | Msa0037000:CDS |
| TTTCCTCTTTGATCAGTATT+GGG | 0.342486 | 1_1:+65886481 | None:intergenic |
| ATTTCCTCTTTGATCAGTAT+TGG | 0.358775 | 1_1:+65886480 | None:intergenic |
| TCCTTTGCTGGTGTCTGCTT+TGG | 0.362739 | 1_1:+65888168 | None:intergenic |
| TGGCTATTGCTATTGCTATT+GGG | 0.364841 | 1_1:+65887928 | None:intergenic |
| CCTTTCTGGGAGTTGTAATT+CGG | 0.369236 | 1_1:+65886662 | None:intergenic |
| CGGGCAGCTGGGAGTACATA+TGG | 0.371354 | 1_1:-65887027 | Msa0037000:CDS |
| ACCATTGGAAGGGTTGCTTC+TGG | 0.385048 | 1_1:-65886159 | Msa0037000:CDS |
| AATGAAATACTCTTTGTTTG+AGG | 0.389567 | 1_1:+65887978 | None:intergenic |
| TTTACAGAGATTCGGGCAGC+TGG | 0.397683 | 1_1:-65887039 | Msa0037000:intron |
| CTCATGGTCAATTAAGTCTT+CGG | 0.397981 | 1_1:+65884248 | Msa0036990:intron |
| TAAAATACTCTCAGGAGTTT+CGG | 0.400065 | 1_1:-65886626 | Msa0037000:CDS |
| TGTCTGCTTTGGTAAGTTGT+TGG | 0.406083 | 1_1:+65888179 | None:intergenic |
| GATTGAGGAGGAAGGGTTGG+TGG | 0.412747 | 1_1:+65887890 | None:intergenic |
| AAAGTTGAATTGAATTGGTT+TGG | 0.413974 | 1_1:+65888026 | None:intergenic |
| GGAGGAGAGGGATCGGAGAT+TGG | 0.418731 | 1_1:+65887825 | None:intergenic |
| AGGGATCGGAGATTGGAATT+GGG | 0.422790 | 1_1:+65887832 | None:intergenic |
| TCATGGTCAATTAAGTCTTC+GGG | 0.427778 | 1_1:+65884249 | Msa0036990:intron |
| CTTTGTTTGAGGTTCGGTAA+TGG | 0.430366 | 1_1:+65887989 | None:intergenic |
| GTATGGTGTCAGATCAGTTC+AGG | 0.431140 | 1_1:-65886294 | Msa0037000:intron |
| AATACTCTTTGTTTGAGGTT+CGG | 0.434743 | 1_1:+65887983 | None:intergenic |
| AGTTGTTGGTGAGTCGAGAA+TGG | 0.450017 | 1_1:+65888193 | None:intergenic |
| AGGAAGAGAAAGAATCGGTT+CGG | 0.456406 | 1_1:+65887863 | None:intergenic |
| GCAACCTATGACATGAAGTA+TGG | 0.467320 | 1_1:-65886311 | Msa0037000:CDS |
| AATTGAATTGGTTTGGTTGG+TGG | 0.474469 | 1_1:+65888033 | None:intergenic |
| GTTGTAATTCGGCTTTGACC+TGG | 0.476712 | 1_1:+65886673 | None:intergenic |
| TTGAATTGAATTGGTTTGGT+TGG | 0.479419 | 1_1:+65888030 | None:intergenic |
| CAGTATTGGGCACAAATACA+TGG | 0.482313 | 1_1:+65886494 | None:intergenic |
| TTGGGCACAAATACATGGAT+TGG | 0.483473 | 1_1:+65886499 | None:intergenic |
| GGTAGACGGAGGAGAGGGAT+CGG | 0.486339 | 1_1:+65887818 | None:intergenic |
| CGTGGGCAGTAACTGGGAAA+TGG | 0.488897 | 1_1:-65888116 | Msa0037000:five_prime_UTR |
| GGAAGAGAAAGAATCGGTTC+GGG | 0.494003 | 1_1:+65887864 | None:intergenic |
| AAGGATTGAGGAGGAAGGGT+TGG | 0.494129 | 1_1:+65887887 | None:intergenic |
| GGTGTTGGATGTGTCATTGA+TGG | 0.495772 | 1_1:-65886961 | Msa0037000:CDS |
| CCGAATTACAACTCCCAGAA+AGG | 0.500551 | 1_1:-65886662 | Msa0037000:CDS |
| ATTGGAATTGGGAGAAAGGA+AGG | 0.503710 | 1_1:+65887843 | None:intergenic |
| GTGAGTCGAGAATGGGAAGA+TGG | 0.507831 | 1_1:+65888201 | None:intergenic |
| GTTGTTGGTGAGTCGAGAAT+GGG | 0.508037 | 1_1:+65888194 | None:intergenic |
| ATTGGTTTGGTTGGTGGCAA+TGG | 0.512396 | 1_1:+65888039 | None:intergenic |
| GAATCTCATGGAGGAGGTGT+TGG | 0.513832 | 1_1:-65886976 | Msa0037000:CDS |
| TGAGACACTGACACTTGATC+AGG | 0.515093 | 1_1:-65884229 | None:intergenic |
| AACTCCTATATTTAGGGTGG+TGG | 0.515942 | 1_1:-65886201 | Msa0037000:intron |
| AATCGGTTCGGGAAGGATTG+AGG | 0.517610 | 1_1:+65887875 | None:intergenic |
| GGAGATTGGAATTGGGAGAA+AGG | 0.519246 | 1_1:+65887839 | None:intergenic |
| GGGCAGCTGGGAGTACATAT+GGG | 0.522096 | 1_1:-65887026 | Msa0037000:CDS |
| ACGGAGGTAGACGGAGGAGA+GGG | 0.527565 | 1_1:+65887813 | None:intergenic |
| AAGGAAGGAAGAGAAAGAAT+CGG | 0.529630 | 1_1:+65887858 | None:intergenic |
| GACGGAGGTAGACGGAGGAG+AGG | 0.531416 | 1_1:+65887812 | None:intergenic |
| TTAATTGCAGGAGTTACTAC+AGG | 0.532875 | 1_1:-65886526 | Msa0037000:intron |
| GATACATGTAAAATACTCTC+AGG | 0.533691 | 1_1:-65886634 | Msa0037000:CDS |
| GTTCTTGTGTATAGGAGGCC+AGG | 0.534576 | 1_1:-65886691 | Msa0037000:intron |
| TGTCATAGGTTGCATCCGCA+TGG | 0.536508 | 1_1:+65886321 | None:intergenic |
| GACACCATACTTCATGTCAT+AGG | 0.537696 | 1_1:+65886307 | None:intergenic |
| TCTTCTGCTAGGGAAACCAT+TGG | 0.551202 | 1_1:-65886174 | Msa0037000:CDS |
| TCGGGAAGGATTGAGGAGGA+AGG | 0.552310 | 1_1:+65887882 | None:intergenic |
| AAGCCACGTGGGCAGTAACT+GGG | 0.560152 | 1_1:-65888122 | Msa0037000:five_prime_UTR |
| GTGGTGGTAGATCTTCTGCT+AGG | 0.562776 | 1_1:-65886185 | Msa0037000:CDS |
| GAAACGAGGACGGAGGTAGA+CGG | 0.563398 | 1_1:+65887804 | None:intergenic |
| CCTGTGCACTTGAGAGACAT+AGG | 0.564384 | 1_1:+65884281 | Msa0036990:intron |
| CGGGAAGGATTGAGGAGGAA+GGG | 0.565327 | 1_1:+65887883 | None:intergenic |
| CTCTGAAGCTGATATGCAAG+AGG | 0.568295 | 1_1:-65886917 | Msa0037000:CDS |
| ACCAGAAGCAACCCTTCCAA+TGG | 0.569596 | 1_1:+65886158 | None:intergenic |
| CCTATGTCTCTCAAGTGCAC+AGG | 0.572163 | 1_1:-65884281 | Msa0037000:CDS |
| CATATGTTGTAACCCGAAAG+TGG | 0.573615 | 1_1:+65887001 | None:intergenic |
| TGCTAGGGAAACCATTGGAA+GGG | 0.574957 | 1_1:-65886169 | Msa0037000:CDS |
| GTCATAGGTTGCATCCGCAT+GGG | 0.577755 | 1_1:+65886322 | None:intergenic |
| CTGCTAGGGAAACCATTGGA+AGG | 0.577836 | 1_1:-65886170 | Msa0037000:CDS |
| GTGAATCCAAGAAGCGAACA+AGG | 0.578442 | 1_1:-65888240 | Msa0037000:five_prime_UTR |
| TGGTGGTAGATCTTCTGCTA+GGG | 0.582067 | 1_1:-65886184 | Msa0037000:CDS |
| ACAACATATGGAGAATCTCA+TGG | 0.584104 | 1_1:-65886988 | Msa0037000:CDS |
| GATCAAGTGTCAGTGTCTCA+TGG | 0.586576 | 1_1:+65884232 | Msa0036990:intron |
| TGCATATCAGCTTCAGAGAG+AGG | 0.589694 | 1_1:+65886922 | None:intergenic |
| TTACAGAGATTCGGGCAGCT+GGG | 0.592616 | 1_1:-65887038 | Msa0037000:intron |
| GCTTCAGAGAGAGGGAGGCG+AGG | 0.596196 | 1_1:+65886931 | None:intergenic |
| GCATATCAGCTTCAGAGAGA+GGG | 0.596658 | 1_1:+65886923 | None:intergenic |
| AGTAACTGGGAAATGGTGGT+AGG | 0.600229 | 1_1:-65888109 | Msa0037000:five_prime_UTR |
| GTGCCCAATACTGATCAAAG+AGG | 0.603337 | 1_1:-65886484 | Msa0037000:CDS |
| TATGGAGAATCTCATGGAGG+AGG | 0.607485 | 1_1:-65886982 | Msa0037000:CDS |
| TAGGTTGCATCCGCATGGGA+AGG | 0.607769 | 1_1:+65886326 | None:intergenic |
| ATACTCTCAGGAGTTTCGGA+AGG | 0.610665 | 1_1:-65886622 | Msa0037000:intron |
| AGCTTATAGGCCTTCCCATG+CGG | 0.616697 | 1_1:-65886336 | Msa0037000:CDS |
| GGTGGAGATCGAAGAAGCCA+TGG | 0.622096 | 1_1:+65887908 | None:intergenic |
| GCGTAATTCTAGCATAGTAG+TGG | 0.622148 | 1_1:+65888068 | None:intergenic |
| TCAGAGAGAGGGAGGCGAGG+AGG | 0.627324 | 1_1:+65886934 | None:intergenic |
| GAGAAAGAATCGGTTCGGGA+AGG | 0.628737 | 1_1:+65887868 | None:intergenic |
| TGCAAGAGGATCTTGACAGA+AGG | 0.632234 | 1_1:-65886903 | Msa0037000:intron |
| ACCAAAGCAGACACCAGCAA+AGG | 0.639168 | 1_1:-65888169 | Msa0037000:five_prime_UTR |
| TGTTTGAGGTTCGGTAATGG+TGG | 0.641901 | 1_1:+65887992 | None:intergenic |
| GGGCAGTAACTGGGAAATGG+TGG | 0.642610 | 1_1:-65888113 | Msa0037000:five_prime_UTR |
| TATCAGCTTCAGAGAGAGGG+AGG | 0.644707 | 1_1:+65886926 | None:intergenic |
| CGGTTCGGGAAGGATTGAGG+AGG | 0.649267 | 1_1:+65887878 | None:intergenic |
| AAAGGACCAATGACCAAACA+AGG | 0.652812 | 1_1:-65888151 | Msa0037000:five_prime_UTR |
| AATAGCAATAGCAATAGCCA+TGG | 0.652972 | 1_1:-65887925 | Msa0037000:exon |
| TTTCCCAGTTACTGCCCACG+TGG | 0.653902 | 1_1:+65888119 | None:intergenic |
| ACGAGGACGGAGGTAGACGG+AGG | 0.699102 | 1_1:+65887807 | None:intergenic |
| ACATATGGAGAATCTCATGG+AGG | 0.763629 | 1_1:-65886985 | Msa0037000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGTTGTTATTATTTTTA+TGG | - | chr1_1:65884756-65884775 | Msa0037000:intron | 10.0% |
| !! | GAATTTCAACATTATTAAAT+TGG | - | chr1_1:65885038-65885057 | Msa0037000:intron | 15.0% |
| !! | TGAGAATTGAAAAAAATATA+TGG | - | chr1_1:65885220-65885239 | Msa0037000:intron | 15.0% |
| !! | AAAGAAATTTAACATTAGTA+TGG | + | chr1_1:65886416-65886435 | None:intergenic | 15.0% |
| !!! | TTTCTTTAATGTTTTTTAAC+AGG | - | chr1_1:65886429-65886448 | Msa0037000:intron | 15.0% |
| !! | TGATTAAAACGAATATTATA+GGG | + | chr1_1:65886943-65886962 | None:intergenic | 15.0% |
| !! | ATGATTAAAACGAATATTAT+AGG | + | chr1_1:65886944-65886963 | None:intergenic | 15.0% |
| !! | ATAACAACAATTCAAACAAA+CGG | + | chr1_1:65884748-65884767 | Msa0036990:intron | 20.0% |
| !! | ACAACATTAAGATTGAAAAA+TGG | + | chr1_1:65884850-65884869 | Msa0036990:CDS | 20.0% |
| !! | TTTCAACATTATTAAATTGG+CGG | - | chr1_1:65885041-65885060 | Msa0037000:intron | 20.0% |
| !!! | ATTTTATTGAAATGCTAGTA+AGG | - | chr1_1:65885687-65885706 | Msa0037000:intron | 20.0% |
| !!! | TTTTATTGAAATGCTAGTAA+GGG | - | chr1_1:65885688-65885707 | Msa0037000:intron | 20.0% |
| !!! | CTTTAAAGAATAACATTGTA+AGG | - | chr1_1:65885767-65885786 | Msa0037000:intron | 20.0% |
| !! | TCGTATAATTTATTAATTGC+AGG | - | chr1_1:65885942-65885961 | Msa0037000:intron | 20.0% |
| !! | TGTTCAGAAATATTCAATAA+AGG | - | chr1_1:65886038-65886057 | Msa0037000:intron | 20.0% |
| !!! | CTAATAAAATGTTGTACTTT+TGG | - | chr1_1:65886089-65886108 | Msa0037000:intron | 20.0% |
| !! | AAAATCCTTAAAAAATTTGC+AGG | - | chr1_1:65886357-65886376 | Msa0037000:CDS | 20.0% |
| !! | CTGTATTGTTCTTTAATTAA+TGG | + | chr1_1:65886532-65886551 | None:intergenic | 20.0% |
| !!! | ACTTCTTCTTTCTTATTTAT+GGG | - | chr1_1:65886616-65886635 | Msa0037000:intron | 20.0% |
| !! | CAAGATACATATGAAAAATT+AGG | - | chr1_1:65886837-65886856 | Msa0037000:intron | 20.0% |
| !!! | ATATACTGGTTATTTTGTTT+TGG | - | chr1_1:65886889-65886908 | Msa0037000:intron | 20.0% |
| !!! | TATAGGAGATTATATTTTCT+GGG | + | chr1_1:65887386-65887405 | None:intergenic | 20.0% |
| ! | AAAGTTGAATTGAATTGGTT+TGG | + | chr1_1:65884457-65884476 | Msa0036990:intron | 25.0% |
| !! | AATGAAATACTCTTTGTTTG+AGG | + | chr1_1:65884505-65884524 | Msa0036990:intron | 25.0% |
| ! | AAAGTAGCAGAAAATAAAGA+AGG | + | chr1_1:65884898-65884917 | None:intergenic | 25.0% |
| ! | TTGAAGTTGAAAATAAAGCT+GGG | + | chr1_1:65885267-65885286 | None:intergenic | 25.0% |
| !! | TTTGAAGTTGAAAATAAAGC+TGG | + | chr1_1:65885268-65885287 | None:intergenic | 25.0% |
| ! | ACTTCAAATTCCAATTAGTT+TGG | - | chr1_1:65885280-65885299 | Msa0037000:intron | 25.0% |
| !! | TGATGTATTTTACAGAGATT+CGG | - | chr1_1:65885433-65885452 | Msa0037000:intron | 25.0% |
| ! | TTACAATAGTTATGAGAAGA+CGG | + | chr1_1:65885626-65885645 | None:intergenic | 25.0% |
| ! | TAGAGGAATAATGTATAAGA+TGG | - | chr1_1:65885664-65885683 | Msa0037000:intron | 25.0% |
| ! | TCTTTACAGTGTAATAAGTT+AGG | - | chr1_1:65886215-65886234 | Msa0037000:intron | 25.0% |
| ! | TTAACCTTTCAATAGAAACT+TGG | - | chr1_1:65886492-65886511 | Msa0037000:CDS | 25.0% |
| ! | AATACCAAGTTTCTATTGAA+AGG | + | chr1_1:65886499-65886518 | None:intergenic | 25.0% |
| ! | TTTCAATAGAAACTTGGTAT+TGG | - | chr1_1:65886498-65886517 | Msa0037000:CDS | 25.0% |
| ! | TTCAATAGAAACTTGGTATT+GGG | - | chr1_1:65886499-65886518 | Msa0037000:CDS | 25.0% |
| !! | CACTTCTTCTTTCTTATTTA+TGG | - | chr1_1:65886615-65886634 | Msa0037000:intron | 25.0% |
| !!! | CAATGTGAATGATTTGTTTT+AGG | + | chr1_1:65886743-65886762 | None:intergenic | 25.0% |
| !! | TCATCGTGTTTTCAATATTA+GGG | + | chr1_1:65886816-65886835 | None:intergenic | 25.0% |
| !! | TTCATCGTGTTTTCAATATT+AGG | + | chr1_1:65886817-65886836 | None:intergenic | 25.0% |
| ! | TAACCAGTATATTATAGACA+GGG | + | chr1_1:65886881-65886900 | None:intergenic | 25.0% |
| ! | ATAACCAGTATATTATAGAC+AGG | + | chr1_1:65886882-65886901 | None:intergenic | 25.0% |
| ! | ATTTCAGCTATAATGATCAA+AGG | + | chr1_1:65887259-65887278 | None:intergenic | 25.0% |
| ! | TGAAATGATATAGAGTGAAA+TGG | - | chr1_1:65887273-65887292 | Msa0037000:intron | 25.0% |
| !! | GTATAGGAGATTATATTTTC+TGG | + | chr1_1:65887387-65887406 | None:intergenic | 25.0% |
| ! | TGGCTTATTAGATAAAGAAT+TGG | - | chr1_1:65887600-65887619 | Msa0037000:intron | 25.0% |
| !!! | CTAATAACTCTAAAACCTTT+TGG | + | chr1_1:65887788-65887807 | None:intergenic | 25.0% |
| ! | AAACACGTTAAACAGTTAAA+AGG | + | chr1_1:65888122-65888141 | None:intergenic | 25.0% |
| !!! | AATGATATTTCTGGATGAAT+TGG | + | chr1_1:65888151-65888170 | None:intergenic | 25.0% |
| ! | AATTCATCCAGAAATATCAT+TGG | - | chr1_1:65888150-65888169 | Msa0037000:five_prime_UTR | 25.0% |
| !! | TTTTATCCTTGTTTGGTCAT+TGG | + | chr1_1:65884338-65884357 | Msa0036990:intron | 30.0% |
| !! | TTGAATTGAATTGGTTTGGT+TGG | + | chr1_1:65884453-65884472 | Msa0036990:intron | 30.0% |
| TCGCAAAAGTTGAATTGAAT+TGG | + | chr1_1:65884462-65884481 | Msa0036990:intron | 30.0% | |
| ! | AATACTCTTTGTTTGAGGTT+CGG | + | chr1_1:65884500-65884519 | Msa0036990:intron | 30.0% |
| !!! | TACTAACGGAGTTGTTTTTT+GGG | + | chr1_1:65884702-65884721 | Msa0036990:intron | 30.0% |
| !!! | ATACTAACGGAGTTGTTTTT+TGG | + | chr1_1:65884703-65884722 | Msa0036990:intron | 30.0% |
| AGTAAAGAGAAAAGAGAAAG+CGG | + | chr1_1:65884823-65884842 | Msa0036990:CDS | 30.0% | |
| ACTTTGGTACAGAAAAATTC+AGG | + | chr1_1:65884939-65884958 | None:intergenic | 30.0% | |
| TAGTCTCAAACCAAACTAAT+TGG | + | chr1_1:65885293-65885312 | None:intergenic | 30.0% | |
| ! | GATGTATTTTACAGAGATTC+GGG | - | chr1_1:65885434-65885453 | Msa0037000:intron | 30.0% |
| AACTATTGTAAAAAGCCCTT+TGG | - | chr1_1:65885635-65885654 | Msa0037000:intron | 30.0% | |
| CATTATGAATGATAGCTGAT+AGG | - | chr1_1:65885718-65885737 | Msa0037000:intron | 30.0% | |
| ATTGTAAGGTTCTTGTGTAT+AGG | - | chr1_1:65885781-65885800 | Msa0037000:intron | 30.0% | |
| GATACATGTAAAATACTCTC+AGG | - | chr1_1:65885846-65885865 | Msa0037000:intron | 30.0% | |
| TAAAATACTCTCAGGAGTTT+CGG | - | chr1_1:65885854-65885873 | Msa0037000:intron | 30.0% | |
| TTCTTCTTACTGCTATTAAC+TGG | - | chr1_1:65885888-65885907 | Msa0037000:intron | 30.0% | |
| TCTTCTTACTGCTATTAACT+GGG | - | chr1_1:65885889-65885908 | Msa0037000:intron | 30.0% | |
| TTTCCTCTTTGATCAGTATT+GGG | + | chr1_1:65886002-65886021 | None:intergenic | 30.0% | |
| ATTTCCTCTTTGATCAGTAT+TGG | + | chr1_1:65886003-65886022 | None:intergenic | 30.0% | |
| TTTATTAGCCACGTAAATCA+AGG | + | chr1_1:65886077-65886096 | None:intergenic | 30.0% | |
| !!! | GTACTTTTGGATACTTTTTC+AGG | - | chr1_1:65886102-65886121 | Msa0037000:intron | 30.0% |
| ACATCTGAACTCCTATATTT+AGG | - | chr1_1:65886272-65886291 | Msa0037000:intron | 30.0% | |
| CATCTGAACTCCTATATTTA+GGG | - | chr1_1:65886273-65886292 | Msa0037000:intron | 30.0% | |
| !!! | CAGTTCCTGCAAATTTTTTA+AGG | + | chr1_1:65886365-65886384 | None:intergenic | 30.0% |
| TAAAAAATTTGCAGGAACTG+AGG | - | chr1_1:65886365-65886384 | Msa0037000:intron | 30.0% | |
| CTAACATGATAGATCATTCT+TGG | + | chr1_1:65886455-65886474 | None:intergenic | 30.0% | |
| CAAGAATGATCTATCATGTT+AGG | - | chr1_1:65886453-65886472 | Msa0037000:intron | 30.0% | |
| AAGAACAATACAGAACTTCA+AGG | - | chr1_1:65886539-65886558 | Msa0037000:intron | 30.0% | |
| AGAACAATACAGAACTTCAA+GGG | - | chr1_1:65886540-65886559 | Msa0037000:intron | 30.0% | |
| TGAGATAGTTGTAAGAAATG+AGG | + | chr1_1:65886649-65886668 | None:intergenic | 30.0% | |
| ! | AAGTAGTTAGTTGGTTAGTT+GGG | + | chr1_1:65886673-65886692 | None:intergenic | 30.0% |
| ! | TATGTGTTTGTTAGGACATT+TGG | + | chr1_1:65886710-65886729 | None:intergenic | 30.0% |
| GGTGATATTATGTGTTTGTT+AGG | + | chr1_1:65886718-65886737 | None:intergenic | 30.0% | |
| !!! | GTGAATGATTTGTTTTAGGT+GGG | + | chr1_1:65886739-65886758 | None:intergenic | 30.0% |
| !!! | TGTGAATGATTTGTTTTAGG+TGG | + | chr1_1:65886740-65886759 | None:intergenic | 30.0% |
| ! | GTTTTCAATATTAGGGAACT+TGG | + | chr1_1:65886809-65886828 | None:intergenic | 30.0% |
| ! | TTTGGTCCCTATAATTGTTT+TGG | - | chr1_1:65886907-65886926 | Msa0037000:CDS | 30.0% |
| TTTCGGCCAAAACAATTATA+GGG | + | chr1_1:65886916-65886935 | None:intergenic | 30.0% | |
| ATTTCGGCCAAAACAATTAT+AGG | + | chr1_1:65886917-65886936 | None:intergenic | 30.0% | |
| !!! | TATAATTGTTTTGGCCGAAA+TGG | - | chr1_1:65886916-65886935 | Msa0037000:CDS | 30.0% |
| GAATATTATAGGGACCATTT+CGG | + | chr1_1:65886933-65886952 | None:intergenic | 30.0% | |
| ATTGAGCTAGCTATTGTTAT+GGG | + | chr1_1:65887090-65887109 | None:intergenic | 30.0% | |
| TATTGAGCTAGCTATTGTTA+TGG | + | chr1_1:65887091-65887110 | None:intergenic | 30.0% | |
| ! | AATAGCTAGCTCAATAGTTT+TGG | - | chr1_1:65887095-65887114 | Msa0037000:intron | 30.0% |
| ! | GAATTCTTTAGAGACATGAA+TGG | + | chr1_1:65887143-65887162 | None:intergenic | 30.0% |
| ATAATGATCAAAGGTTCTCT+TGG | + | chr1_1:65887250-65887269 | None:intergenic | 30.0% | |
| AGAAACATTGCAGATACAAT+AGG | + | chr1_1:65887472-65887491 | None:intergenic | 30.0% | |
| AAAAGTCCACTATATGAACA+TGG | + | chr1_1:65887511-65887530 | None:intergenic | 30.0% | |
| !!! | ATGTTCATATAGTGGACTTT+TGG | - | chr1_1:65887510-65887529 | Msa0037000:intron | 30.0% |
| TGGGATATCAATGTTATCAA+TGG | + | chr1_1:65887560-65887579 | None:intergenic | 30.0% | |
| AATAGGAAGGAGAACAAAAA+AGG | + | chr1_1:65887651-65887670 | None:intergenic | 30.0% | |
| !!! | AGATCTGGTTTTTGATATGA+TGG | + | chr1_1:65887723-65887742 | None:intergenic | 30.0% |
| ! | AAAACCAGATCTAGTAGTTT+TGG | - | chr1_1:65887731-65887750 | Msa0037000:intron | 30.0% |
| ATAACCAAAACTACTAGATC+TGG | + | chr1_1:65887738-65887757 | None:intergenic | 30.0% | |
| !!! | AGATCTAGTAGTTTTGGTTA+TGG | - | chr1_1:65887737-65887756 | Msa0037000:intron | 30.0% |
| CATATTACACAAGATCAGTA+TGG | + | chr1_1:65887874-65887893 | None:intergenic | 30.0% | |
| AACAAAAAATTGAGAGAGAG+GGG | + | chr1_1:65887940-65887959 | None:intergenic | 30.0% | |
| GAACAAAAAATTGAGAGAGA+GGG | + | chr1_1:65887941-65887960 | None:intergenic | 30.0% | |
| TGAACAAAAAATTGAGAGAG+AGG | + | chr1_1:65887942-65887961 | None:intergenic | 30.0% | |
| TAACAGATTAAAGGAGTTCA+AGG | + | chr1_1:65888047-65888066 | None:intergenic | 30.0% | |
| !!! | GTGGCTTTTTTATCCTTGTT+TGG | + | chr1_1:65884345-65884364 | Msa0036990:intron | 35.0% |
| !! | AATTGAATTGGTTTGGTTGG+TGG | + | chr1_1:65884450-65884469 | Msa0036990:intron | 35.0% |
| ! | TGGCTATTGCTATTGCTATT+GGG | + | chr1_1:65884555-65884574 | Msa0036990:intron | 35.0% |
| ! | ATGGCTATTGCTATTGCTAT+TGG | + | chr1_1:65884556-65884575 | Msa0036990:intron | 35.0% |
| AATAGCAATAGCAATAGCCA+TGG | - | chr1_1:65884555-65884574 | Msa0037000:intron | 35.0% | |
| AAGGAAGGAAGAGAAAGAAT+CGG | + | chr1_1:65884625-65884644 | Msa0036990:intron | 35.0% | |
| !!! | ACTAACGGAGTTGTTTTTTG+GGG | + | chr1_1:65884701-65884720 | Msa0036990:intron | 35.0% |
| AGAGAGAGAGAGAATACTAA+CGG | + | chr1_1:65884716-65884735 | Msa0036990:intron | 35.0% | |
| ! | ACCAAAGTTTTCCAGTTGTA+AGG | - | chr1_1:65884951-65884970 | Msa0037000:intron | 35.0% |
| TCCTTACAACTGGAAAACTT+TGG | + | chr1_1:65884955-65884974 | None:intergenic | 35.0% | |
| ! | AAGTTTTCCAGTTGTAAGGA+TGG | - | chr1_1:65884955-65884974 | Msa0037000:intron | 35.0% |
| ATGAATTCCATCCTTACAAC+TGG | + | chr1_1:65884965-65884984 | None:intergenic | 35.0% | |
| ACTGCAATGCCAATATTGTT+AGG | - | chr1_1:65885091-65885110 | Msa0037000:intron | 35.0% | |
| TTAATCACACAAGCTGATGT+AGG | - | chr1_1:65885172-65885191 | Msa0037000:intron | 35.0% | |
| TCTTAGGAAGTCTAGACTAA+TGG | - | chr1_1:65885369-65885388 | Msa0037000:intron | 35.0% | |
| ACTAATGGTACTGTGATTGA+TGG | - | chr1_1:65885384-65885403 | Msa0037000:intron | 35.0% | |
| ACAACATATGGAGAATCTCA+TGG | - | chr1_1:65885492-65885511 | Msa0037000:intron | 35.0% | |
| ! | AGACGGTGAGATAATTTTGA+AGG | + | chr1_1:65885609-65885628 | None:intergenic | 35.0% |
| TATTGTAAAAAGCCCTTTGG+AGG | - | chr1_1:65885638-65885657 | Msa0037000:intron | 35.0% | |
| TTAATTGCAGGAGTTACTAC+AGG | - | chr1_1:65885954-65885973 | Msa0037000:intron | 35.0% | |
| GTGGTCATTAGATAGGAAAT+GGG | + | chr1_1:65886591-65886610 | None:intergenic | 35.0% | |
| TGTGGTCATTAGATAGGAAA+TGG | + | chr1_1:65886592-65886611 | None:intergenic | 35.0% | |
| !! | AAGAAAGAAGAAGTGTCATG+TGG | + | chr1_1:65886610-65886629 | None:intergenic | 35.0% |
| CAAGTAGTTAGTTGGTTAGT+TGG | + | chr1_1:65886674-65886693 | None:intergenic | 35.0% | |
| GGGTTTATCAAGTAGTTAGT+TGG | + | chr1_1:65886682-65886701 | None:intergenic | 35.0% | |
| TGTTAGGACATTTGGTAAGA+GGG | + | chr1_1:65886702-65886721 | None:intergenic | 35.0% | |
| TTGTTAGGACATTTGGTAAG+AGG | + | chr1_1:65886703-65886722 | None:intergenic | 35.0% | |
| TCACCCTGTCTATAATATAC+TGG | - | chr1_1:65886875-65886894 | Msa0037000:intron | 35.0% | |
| CTTGGTAAGTGATCATATTC+TGG | + | chr1_1:65887232-65887251 | None:intergenic | 35.0% | |
| ! | CAACTCTAAGGAAGACAAAA+GGG | + | chr1_1:65887356-65887375 | None:intergenic | 35.0% |
| TTGACAACATTGTAGGGTAT+AGG | + | chr1_1:65887403-65887422 | None:intergenic | 35.0% | |
| GCAGATTTGACAACATTGTA+GGG | + | chr1_1:65887409-65887428 | None:intergenic | 35.0% | |
| TGCAGATTTGACAACATTGT+AGG | + | chr1_1:65887410-65887429 | None:intergenic | 35.0% | |
| ! | ACTATATGAACATGGTGTTG+CGG | + | chr1_1:65887503-65887522 | None:intergenic | 35.0% |
| !!! | TCATATAGTGGACTTTTGGT+TGG | - | chr1_1:65887514-65887533 | Msa0037000:intron | 35.0% |
| TCAATGTTATCAATGGCGAA+TGG | + | chr1_1:65887553-65887572 | None:intergenic | 35.0% | |
| TTGATATCCCATCACACTAA+TGG | - | chr1_1:65887569-65887588 | Msa0037000:intron | 35.0% | |
| GCTAAAACCATTAGTGTGAT+GGG | + | chr1_1:65887579-65887598 | None:intergenic | 35.0% | |
| AGCTAAAACCATTAGTGTGA+TGG | + | chr1_1:65887580-65887599 | None:intergenic | 35.0% | |
| !!! | TCACACTAATGGTTTTAGCT+TGG | - | chr1_1:65887580-65887599 | Msa0037000:intron | 35.0% |
| GAGAACAAAAAAGGAAAGCT+GGG | + | chr1_1:65887642-65887661 | None:intergenic | 35.0% | |
| ! | TGTTGCAGAAAAGCATGAAT+AGG | + | chr1_1:65887668-65887687 | None:intergenic | 35.0% |
| TTGTTCTAGTACTTGCACAA+AGG | + | chr1_1:65887823-65887842 | None:intergenic | 35.0% | |
| TTTGTGCAAGTACTAGAACA+AGG | - | chr1_1:65887822-65887841 | Msa0037000:CDS | 35.0% | |
| TTGTGCAAGTACTAGAACAA+GGG | - | chr1_1:65887823-65887842 | Msa0037000:CDS | 35.0% | |
| TACACAAGATCAGTATGGAT+AGG | + | chr1_1:65887869-65887888 | None:intergenic | 35.0% | |
| TGGTTGAGCTAACAGATTAA+AGG | + | chr1_1:65888056-65888075 | None:intergenic | 35.0% | |
| GACTTAGCCAATGATATTTC+TGG | + | chr1_1:65888160-65888179 | None:intergenic | 35.0% | |
| TCATGGTCAATTAAGTCTTC+GGG | + | chr1_1:65888234-65888253 | None:intergenic | 35.0% | |
| CTCATGGTCAATTAAGTCTT+CGG | + | chr1_1:65888235-65888254 | None:intergenic | 35.0% | |
| TAACTTCCTTGTTCGCTTCT+TGG | + | chr1_1:65884249-65884268 | Msa0036990:intron | 40.0% | |
| TGTCTGCTTTGGTAAGTTGT+TGG | + | chr1_1:65884304-65884323 | Msa0036990:intron | 40.0% | |
| AAAGGACCAATGACCAAACA+AGG | - | chr1_1:65884329-65884348 | Msa0037000:intron | 40.0% | |
| ACAAGGATAAAAAAGCCACG+TGG | - | chr1_1:65884346-65884365 | Msa0037000:intron | 40.0% | |
| CAAGGATAAAAAAGCCACGT+GGG | - | chr1_1:65884347-65884366 | Msa0037000:intron | 40.0% | |
| GCGTAATTCTAGCATAGTAG+TGG | + | chr1_1:65884415-65884434 | Msa0036990:intron | 40.0% | |
| ! | CTTTGTTTGAGGTTCGGTAA+TGG | + | chr1_1:65884494-65884513 | Msa0036990:intron | 40.0% |
| AGGAAGAGAAAGAATCGGTT+CGG | + | chr1_1:65884620-65884639 | Msa0036990:intron | 40.0% | |
| ATTGGAATTGGGAGAAAGGA+AGG | + | chr1_1:65884640-65884659 | Msa0036990:intron | 40.0% | |
| !!! | AGTTGTTTTTTGGGGAAACG+AGG | + | chr1_1:65884693-65884712 | Msa0036990:intron | 40.0% |
| !! | AATTCAGGTTGCACAAAGAG+TGG | + | chr1_1:65884924-65884943 | None:intergenic | 40.0% |
| CAATGCCAATATTGTTAGGC+TGG | - | chr1_1:65885095-65885114 | Msa0037000:intron | 40.0% | |
| AGTGTCCAGCCTAACAATAT+TGG | + | chr1_1:65885103-65885122 | None:intergenic | 40.0% | |
| ATGGTACTGTGATTGATGGA+TGG | - | chr1_1:65885388-65885407 | Msa0037000:intron | 40.0% | |
| ! | TGGTACTGTGATTGATGGAT+GGG | - | chr1_1:65885389-65885408 | Msa0037000:intron | 40.0% |
| GTACATATGGGAACCACTTT+CGG | - | chr1_1:65885466-65885485 | Msa0037000:intron | 40.0% | |
| TACATATGGGAACCACTTTC+GGG | - | chr1_1:65885467-65885486 | Msa0037000:intron | 40.0% | |
| CATATGTTGTAACCCGAAAG+TGG | + | chr1_1:65885482-65885501 | None:intergenic | 40.0% | |
| !! | CACTTTCGGGTTACAACATA+TGG | - | chr1_1:65885480-65885499 | Msa0037000:intron | 40.0% |
| ACATATGGAGAATCTCATGG+AGG | - | chr1_1:65885495-65885514 | Msa0037000:intron | 40.0% | |
| ATTCCTCTATAGCCTCCAAA+GGG | + | chr1_1:65885653-65885672 | None:intergenic | 40.0% | |
| TATTCCTCTATAGCCTCCAA+AGG | + | chr1_1:65885654-65885673 | None:intergenic | 40.0% | |
| GTAAGGTTCTTGTGTATAGG+AGG | - | chr1_1:65885784-65885803 | Msa0037000:intron | 40.0% | |
| ! | CCTTTCTGGGAGTTGTAATT+CGG | + | chr1_1:65885821-65885840 | None:intergenic | 40.0% |
| CATGTATCAGTCTCCTTTCT+GGG | + | chr1_1:65885834-65885853 | None:intergenic | 40.0% | |
| ACATGTATCAGTCTCCTTTC+TGG | + | chr1_1:65885835-65885854 | None:intergenic | 40.0% | |
| TTGGGCACAAATACATGGAT+TGG | + | chr1_1:65885984-65886003 | None:intergenic | 40.0% | |
| ! | CAGTATTGGGCACAAATACA+TGG | + | chr1_1:65885989-65886008 | None:intergenic | 40.0% |
| AACCATGACCTTGATTTACG+TGG | - | chr1_1:65886066-65886085 | Msa0037000:intron | 40.0% | |
| ! | GCGAGATGTCATTAGCTTAT+AGG | - | chr1_1:65886131-65886150 | Msa0037000:CDS | 40.0% |
| GCAACCTATGACATGAAGTA+TGG | - | chr1_1:65886169-65886188 | Msa0037000:CDS | 40.0% | |
| GACACCATACTTCATGTCAT+AGG | + | chr1_1:65886176-65886195 | None:intergenic | 40.0% | |
| CTGAACTCCTATATTTAGGG+TGG | - | chr1_1:65886276-65886295 | Msa0037000:intron | 40.0% | |
| ! | AACTCCTATATTTAGGGTGG+TGG | - | chr1_1:65886279-65886298 | Msa0037000:intron | 40.0% |
| TCTACCACCACCCTAAATAT+AGG | + | chr1_1:65886286-65886305 | None:intergenic | 40.0% | |
| GTGTCATGTGGTCATTAGAT+AGG | + | chr1_1:65886598-65886617 | None:intergenic | 40.0% | |
| ACTGCAAGTTGTTCAACTTG+AGG | + | chr1_1:65886767-65886786 | None:intergenic | 40.0% | |
| ! | TGTTTTCAGCTCCCATTTGA+TGG | - | chr1_1:65887017-65887036 | Msa0037000:CDS | 40.0% |
| GATCCAGAAGTCCATCAAAT+GGG | + | chr1_1:65887031-65887050 | None:intergenic | 40.0% | |
| TGAAGAAGGTCTATGAGATG+GGG | + | chr1_1:65887064-65887083 | None:intergenic | 40.0% | |
| CTGAAGAAGGTCTATGAGAT+GGG | + | chr1_1:65887065-65887084 | None:intergenic | 40.0% | |
| ACTGAAGAAGGTCTATGAGA+TGG | + | chr1_1:65887066-65887085 | None:intergenic | 40.0% | |
| !! | ATTGTTATGGGCACTGAAGA+AGG | + | chr1_1:65887078-65887097 | None:intergenic | 40.0% |
| ! | ATTTTCTCTCTCTCAGCAAG+AGG | - | chr1_1:65887177-65887196 | Msa0037000:intron | 40.0% |
| ATAGAGTGAAATGGCCTACT+AGG | - | chr1_1:65887282-65887301 | Msa0037000:intron | 40.0% | |
| AATTGAGAACCAGACCTAGT+AGG | + | chr1_1:65887299-65887318 | None:intergenic | 40.0% | |
| AGACAAAAGGGTTAGAAAGC+AGG | + | chr1_1:65887344-65887363 | None:intergenic | 40.0% | |
| ! | GCAACTCTAAGGAAGACAAA+AGG | + | chr1_1:65887357-65887376 | None:intergenic | 40.0% |
| ATGTTGTCAAATCTGCACCA+TGG | - | chr1_1:65887413-65887432 | Msa0037000:intron | 40.0% | |
| ! | ACAATAGGTGTTGCAGTCAA+TGG | + | chr1_1:65887457-65887476 | None:intergenic | 40.0% |
| ! | ATCTGCAATGTTTCTGCCAT+AGG | - | chr1_1:65887477-65887496 | Msa0037000:intron | 40.0% |
| GCAACACCATGTTCATATAG+TGG | - | chr1_1:65887502-65887521 | Msa0037000:intron | 40.0% | |
| GGAGAACAAAAAAGGAAAGC+TGG | + | chr1_1:65887643-65887662 | None:intergenic | 40.0% | |
| ! | GCAGAAAAGCATGAATAGGA+AGG | + | chr1_1:65887664-65887683 | None:intergenic | 40.0% |
| TGTGCAAGTACTAGAACAAG+GGG | - | chr1_1:65887824-65887843 | Msa0037000:CDS | 40.0% | |
| ACAAGATCAGTATGGATAGG+AGG | + | chr1_1:65887866-65887885 | None:intergenic | 40.0% | |
| AGGGGAGATATCTAGTAAGT+AGG | + | chr1_1:65887922-65887941 | None:intergenic | 40.0% | |
| TCACCAATGCATGTTTGATG+CGG | - | chr1_1:65887959-65887978 | Msa0037000:five_prime_UTR | 40.0% | |
| AATCCGCATCAAACATGCAT+TGG | + | chr1_1:65887965-65887984 | None:intergenic | 40.0% | |
| TTAAAGGAGTTCAAGGTCCA+GGG | + | chr1_1:65888040-65888059 | None:intergenic | 40.0% | |
| ATTAAAGGAGTTCAAGGTCC+AGG | + | chr1_1:65888041-65888060 | None:intergenic | 40.0% | |
| ACATATATCCACACCAAACG+GGG | + | chr1_1:65888098-65888117 | None:intergenic | 40.0% | |
| CACATATATCCACACCAAAC+GGG | + | chr1_1:65888099-65888118 | None:intergenic | 40.0% | |
| GCACATATATCCACACCAAA+CGG | + | chr1_1:65888100-65888119 | None:intergenic | 40.0% | |
| GTGAATCCAAGAAGCGAACA+AGG | - | chr1_1:65884240-65884259 | Msa0037000:CDS | 45.0% | |
| ! | GTTGTTGGTGAGTCGAGAAT+GGG | + | chr1_1:65884289-65884308 | Msa0036990:intron | 45.0% |
| ! | AGTTGTTGGTGAGTCGAGAA+TGG | + | chr1_1:65884290-65884309 | Msa0036990:intron | 45.0% |
| TTTGGTCATTGGTCCTTTGC+TGG | + | chr1_1:65884327-65884346 | Msa0036990:intron | 45.0% | |
| AGTAACTGGGAAATGGTGGT+AGG | - | chr1_1:65884371-65884390 | Msa0037000:intron | 45.0% | |
| !! | ATTGGTTTGGTTGGTGGCAA+TGG | + | chr1_1:65884444-65884463 | Msa0036990:intron | 45.0% |
| ! | TGTTTGAGGTTCGGTAATGG+TGG | + | chr1_1:65884491-65884510 | Msa0036990:intron | 45.0% |
| ! | GGAAGAGAAAGAATCGGTTC+GGG | + | chr1_1:65884619-65884638 | Msa0036990:intron | 45.0% |
| GGAGATTGGAATTGGGAGAA+AGG | + | chr1_1:65884644-65884663 | Msa0036990:intron | 45.0% | |
| AGGGATCGGAGATTGGAATT+GGG | + | chr1_1:65884651-65884670 | Msa0036990:intron | 45.0% | |
| !!! | GTTTTTTGGGGAAACGAGGA+CGG | + | chr1_1:65884689-65884708 | Msa0036990:intron | 45.0% |
| ATTGGCATTGCAGTTGAGCT+AGG | + | chr1_1:65885085-65885104 | None:intergenic | 45.0% | |
| ! | TTAGGCTGGACACTTTTACC+CGG | - | chr1_1:65885109-65885128 | Msa0037000:intron | 45.0% |
| ! | GTTACTGCTACTTCTCATGC+TGG | - | chr1_1:65885341-65885360 | Msa0037000:intron | 45.0% |
| TATGGAGAATCTCATGGAGG+AGG | - | chr1_1:65885498-65885517 | Msa0037000:intron | 45.0% | |
| ! | GGTGTTGGATGTGTCATTGA+TGG | - | chr1_1:65885519-65885538 | Msa0037000:intron | 45.0% |
| GCATATCAGCTTCAGAGAGA+GGG | + | chr1_1:65885560-65885579 | None:intergenic | 45.0% | |
| TGCATATCAGCTTCAGAGAG+AGG | + | chr1_1:65885561-65885580 | None:intergenic | 45.0% | |
| !! | CTCTGAAGCTGATATGCAAG+AGG | - | chr1_1:65885563-65885582 | Msa0037000:intron | 45.0% |
| TGCAAGAGGATCTTGACAGA+AGG | - | chr1_1:65885577-65885596 | Msa0037000:intron | 45.0% | |
| ! | GTTGTAATTCGGCTTTGACC+TGG | + | chr1_1:65885810-65885829 | None:intergenic | 45.0% |
| CCGAATTACAACTCCCAGAA+AGG | - | chr1_1:65885818-65885837 | Msa0037000:intron | 45.0% | |
| ATACTCTCAGGAGTTTCGGA+AGG | - | chr1_1:65885858-65885877 | Msa0037000:intron | 45.0% | |
| GTGCCCAATACTGATCAAAG+AGG | - | chr1_1:65885996-65886015 | Msa0037000:intron | 45.0% | |
| AGCCACGTAAATCAAGGTCA+TGG | + | chr1_1:65886071-65886090 | None:intergenic | 45.0% | |
| ! | GTATGGTGTCAGATCAGTTC+AGG | - | chr1_1:65886186-65886205 | Msa0037000:CDS | 45.0% |
| TGGTGGTAGATCTTCTGCTA+GGG | - | chr1_1:65886296-65886315 | Msa0037000:CDS | 45.0% | |
| TCTTCTGCTAGGGAAACCAT+TGG | - | chr1_1:65886306-65886325 | Msa0037000:CDS | 45.0% | |
| TGCTAGGGAAACCATTGGAA+GGG | - | chr1_1:65886311-65886330 | Msa0037000:CDS | 45.0% | |
| GATAGGAAATGGGAGCCTTT+CGG | + | chr1_1:65886581-65886600 | None:intergenic | 45.0% | |
| GGATCCAGAAGTCCATCAAA+TGG | + | chr1_1:65887032-65887051 | None:intergenic | 45.0% | |
| TATGAGATGGGGGAAAGAGA+CGG | + | chr1_1:65887053-65887072 | None:intergenic | 45.0% | |
| GAAGAAGGTCTATGAGATGG+GGG | + | chr1_1:65887063-65887082 | None:intergenic | 45.0% | |
| GAGTGAATTCACGAGTCACT+TGG | - | chr1_1:65887202-65887221 | Msa0037000:intron | 45.0% | |
| TTGTCAAATCTGCACCATGG+TGG | - | chr1_1:65887416-65887435 | Msa0037000:intron | 45.0% | |
| TGTCAAATCTGCACCATGGT+GGG | - | chr1_1:65887417-65887436 | Msa0037000:intron | 45.0% | |
| ! | ATAGGTGTTGCAGTCAATGG+TGG | + | chr1_1:65887454-65887473 | None:intergenic | 45.0% |
| AATGGCGAATGGCAGAGTAT+GGG | + | chr1_1:65887542-65887561 | None:intergenic | 45.0% | |
| !! | AGAGGAGGTTTTGGCAAAAG+TGG | + | chr1_1:65887692-65887711 | None:intergenic | 45.0% |
| !! | GATATGATGGATGACTGCAG+AGG | + | chr1_1:65887710-65887729 | None:intergenic | 45.0% |
| ! | TGGAAGCTTGCTTACCAGTT+TGG | - | chr1_1:65887757-65887776 | Msa0037000:intron | 45.0% |
| !! | ACCAGTTTGGTGTCACCAAA+AGG | - | chr1_1:65887770-65887789 | Msa0037000:intron | 45.0% |
| !! | ACCTTTTGGTGACACCAAAC+TGG | + | chr1_1:65887774-65887793 | None:intergenic | 45.0% |
| GATCAGTATGGATAGGAGGA+TGG | + | chr1_1:65887862-65887881 | None:intergenic | 45.0% | |
| GATCAAGTGTCAGTGTCTCA+TGG | + | chr1_1:65888251-65888270 | None:intergenic | 45.0% | |
| !! | TATATTATTATTACATTATT+TGG | - | chr1_1:65885011-65885030 | Msa0037000:intron | 5.0% |
| GTGAGTCGAGAATGGGAAGA+TGG | + | chr1_1:65884282-65884301 | Msa0036990:intron | 50.0% | |
| ACCAAAGCAGACACCAGCAA+AGG | - | chr1_1:65884311-65884330 | Msa0037000:intron | 50.0% | |
| TCCTTTGCTGGTGTCTGCTT+TGG | + | chr1_1:65884315-65884334 | Msa0036990:intron | 50.0% | |
| AAGGATTGAGGAGGAAGGGT+TGG | + | chr1_1:65884596-65884615 | Msa0036990:intron | 50.0% | |
| !! | AATCGGTTCGGGAAGGATTG+AGG | + | chr1_1:65884608-65884627 | Msa0036990:intron | 50.0% |
| !! | GAGAAAGAATCGGTTCGGGA+AGG | + | chr1_1:65884615-65884634 | Msa0036990:intron | 50.0% |
| GAGGGATCGGAGATTGGAAT+TGG | + | chr1_1:65884652-65884671 | Msa0036990:intron | 50.0% | |
| TGCAGTTGAGCTAGGCCTTA+CGG | + | chr1_1:65885077-65885096 | None:intergenic | 50.0% | |
| ! | TAGGCTGGACACTTTTACCC+GGG | - | chr1_1:65885110-65885129 | Msa0037000:intron | 50.0% |
| TCTCATGCTGGTCGCATCTT+AGG | - | chr1_1:65885353-65885372 | Msa0037000:intron | 50.0% | |
| TTTACAGAGATTCGGGCAGC+TGG | - | chr1_1:65885441-65885460 | Msa0037000:intron | 50.0% | |
| TTACAGAGATTCGGGCAGCT+GGG | - | chr1_1:65885442-65885461 | Msa0037000:intron | 50.0% | |
| ! | GAATCTCATGGAGGAGGTGT+TGG | - | chr1_1:65885504-65885523 | Msa0037000:intron | 50.0% |
| TATCAGCTTCAGAGAGAGGG+AGG | + | chr1_1:65885557-65885576 | None:intergenic | 50.0% | |
| ! | AAGCCCTTTGGAGGCTATAG+AGG | - | chr1_1:65885647-65885666 | Msa0037000:intron | 50.0% |
| GTTCTTGTGTATAGGAGGCC+AGG | - | chr1_1:65885789-65885808 | Msa0037000:intron | 50.0% | |
| AGCTTATAGGCCTTCCCATG+CGG | - | chr1_1:65886144-65886163 | Msa0037000:CDS | 50.0% | |
| GTCATAGGTTGCATCCGCAT+GGG | + | chr1_1:65886161-65886180 | None:intergenic | 50.0% | |
| TGTCATAGGTTGCATCCGCA+TGG | + | chr1_1:65886162-65886181 | None:intergenic | 50.0% | |
| GTGGTGGTAGATCTTCTGCT+AGG | - | chr1_1:65886295-65886314 | Msa0037000:CDS | 50.0% | |
| CTGCTAGGGAAACCATTGGA+AGG | - | chr1_1:65886310-65886329 | Msa0037000:CDS | 50.0% | |
| ACCATTGGAAGGGTTGCTTC+TGG | - | chr1_1:65886321-65886340 | Msa0037000:CDS | 50.0% | |
| ACCAGAAGCAACCCTTCCAA+TGG | + | chr1_1:65886325-65886344 | None:intergenic | 50.0% | |
| !! | GCTCCCATTTGATGGACTTC+TGG | - | chr1_1:65887025-65887044 | Msa0037000:CDS | 50.0% |
| GTGAAATGGCCTACTAGGTC+TGG | - | chr1_1:65887287-65887306 | Msa0037000:intron | 50.0% | |
| GGCTAACACAAAACCCACCA+TGG | + | chr1_1:65887433-65887452 | None:intergenic | 50.0% | |
| ATGGCGAATGGCAGAGTATG+GGG | + | chr1_1:65887541-65887560 | None:intergenic | 50.0% | |
| CAATGGCGAATGGCAGAGTA+TGG | + | chr1_1:65887543-65887562 | None:intergenic | 50.0% | |
| ! | GATGACTGCAGAGGAGGTTT+TGG | + | chr1_1:65887701-65887720 | None:intergenic | 50.0% |
| !! | ATGATGGATGACTGCAGAGG+AGG | + | chr1_1:65887707-65887726 | None:intergenic | 50.0% |
| CAGGGTTCGAATCTTGGCAA+GGG | + | chr1_1:65888022-65888041 | None:intergenic | 50.0% | |
| AAGGTCCAGGGTTCGAATCT+TGG | + | chr1_1:65888028-65888047 | None:intergenic | 50.0% | |
| ATATCCACACCAAACGGGGA+GGG | + | chr1_1:65888094-65888113 | None:intergenic | 50.0% | |
| TATATCCACACCAAACGGGG+AGG | + | chr1_1:65888095-65888114 | None:intergenic | 50.0% | |
| CCTGTGCACTTGAGAGACAT+AGG | + | chr1_1:65888202-65888221 | None:intergenic | 50.0% | |
| CCTATGTCTCTCAAGTGCAC+AGG | - | chr1_1:65888199-65888218 | Msa0037000:five_prime_UTR | 50.0% | |
| AAAGCCACGTGGGCAGTAAC+TGG | - | chr1_1:65884357-65884376 | Msa0037000:intron | 55.0% | |
| AAGCCACGTGGGCAGTAACT+GGG | - | chr1_1:65884358-65884377 | Msa0037000:intron | 55.0% | |
| TTTCCCAGTTACTGCCCACG+TGG | + | chr1_1:65884364-65884383 | Msa0036990:intron | 55.0% | |
| CGTGGGCAGTAACTGGGAAA+TGG | - | chr1_1:65884364-65884383 | Msa0037000:intron | 55.0% | |
| GGGCAGTAACTGGGAAATGG+TGG | - | chr1_1:65884367-65884386 | Msa0037000:intron | 55.0% | |
| GGTGGAGATCGAAGAAGCCA+TGG | + | chr1_1:65884575-65884594 | Msa0036990:intron | 55.0% | |
| GATTGAGGAGGAAGGGTTGG+TGG | + | chr1_1:65884593-65884612 | Msa0036990:intron | 55.0% | |
| CGGGAAGGATTGAGGAGGAA+GGG | + | chr1_1:65884600-65884619 | Msa0036990:intron | 55.0% | |
| TCGGGAAGGATTGAGGAGGA+AGG | + | chr1_1:65884601-65884620 | Msa0036990:intron | 55.0% | |
| GAAACGAGGACGGAGGTAGA+CGG | + | chr1_1:65884679-65884698 | Msa0036990:intron | 55.0% | |
| !! | TTTTGGGGAAACGAGGACGG+AGG | + | chr1_1:65884686-65884705 | Msa0036990:intron | 55.0% |
| ! | GGGCAGCTGGGAGTACATAT+GGG | - | chr1_1:65885454-65885473 | Msa0037000:intron | 55.0% |
| TAGGTTGCATCCGCATGGGA+AGG | + | chr1_1:65886157-65886176 | None:intergenic | 55.0% | |
| GAAATGGGAGCCTTTCGGCA+GGG | + | chr1_1:65886576-65886595 | None:intergenic | 55.0% | |
| CTGGGTCAAGCGCAACTCTA+AGG | + | chr1_1:65887368-65887387 | None:intergenic | 55.0% | |
| !! | GAACATGGTGTTGCGGCCTA+TGG | + | chr1_1:65887496-65887515 | None:intergenic | 55.0% |
| CCAGGGTTCGAATCTTGGCA+AGG | + | chr1_1:65888023-65888042 | None:intergenic | 55.0% | |
| CCTTGCCAAGATTCGAACCC+TGG | - | chr1_1:65888020-65888039 | Msa0037000:five_prime_UTR | 55.0% | |
| TATCCACACCAAACGGGGAG+GGG | + | chr1_1:65888093-65888112 | None:intergenic | 55.0% | |
| ! | CGGTTCGGGAAGGATTGAGG+AGG | + | chr1_1:65884605-65884624 | Msa0036990:intron | 60.0% |
| GGAGGAGAGGGATCGGAGAT+TGG | + | chr1_1:65884658-65884677 | Msa0036990:intron | 60.0% | |
| GGTAGACGGAGGAGAGGGAT+CGG | + | chr1_1:65884665-65884684 | Msa0036990:intron | 60.0% | |
| ACGGAGGTAGACGGAGGAGA+GGG | + | chr1_1:65884670-65884689 | Msa0036990:intron | 60.0% | |
| ! | CGGGCAGCTGGGAGTACATA+TGG | - | chr1_1:65885453-65885472 | Msa0037000:intron | 60.0% |
| TCTGCAACCTCCCTGCCGAA+AGG | - | chr1_1:65886563-65886582 | Msa0037000:intron | 60.0% | |
| GGAAATGGGAGCCTTTCGGC+AGG | + | chr1_1:65886577-65886596 | None:intergenic | 60.0% | |
| GAGGGGATGGGTAGCTCACT+TGG | + | chr1_1:65888076-65888095 | None:intergenic | 60.0% | |
| ACACCAAACGGGGAGGGGAT+GGG | + | chr1_1:65888088-65888107 | None:intergenic | 60.0% | |
| GACGGAGGTAGACGGAGGAG+AGG | + | chr1_1:65884671-65884690 | Msa0036990:intron | 65.0% | |
| ACGAGGACGGAGGTAGACGG+AGG | + | chr1_1:65884676-65884695 | Msa0036990:intron | 65.0% | |
| GGCGGTGTCTGCTGTCCGTA+AGG | - | chr1_1:65885059-65885078 | Msa0037000:intron | 65.0% | |
| GAGCAGAACTGCGAGGTCCC+GGG | + | chr1_1:65885130-65885149 | None:intergenic | 65.0% | |
| CGAGCAGAACTGCGAGGTCC+CGG | + | chr1_1:65885131-65885150 | None:intergenic | 65.0% | |
| ACCTCGCAGTTCTGCTCGCG+AGG | - | chr1_1:65885133-65885152 | Msa0037000:intron | 65.0% | |
| TCAGAGAGAGGGAGGCGAGG+AGG | + | chr1_1:65885549-65885568 | None:intergenic | 65.0% | |
| GCTTCAGAGAGAGGGAGGCG+AGG | + | chr1_1:65885552-65885571 | None:intergenic | 65.0% | |
| ATGGGAGCCTTTCGGCAGGG+AGG | + | chr1_1:65886573-65886592 | None:intergenic | 65.0% | |
| CTACCCATCCCCTCCCCGTT+TGG | - | chr1_1:65888082-65888101 | Msa0037000:five_prime_UTR | 65.0% | |
| CACACCAAACGGGGAGGGGA+TGG | + | chr1_1:65888089-65888108 | None:intergenic | 65.0% | |
| ! | CATCCCCTCCCCGTTTGGTG+TGG | - | chr1_1:65888087-65888106 | Msa0037000:five_prime_UTR | 65.0% |
| GCCTCGCGAGCAGAACTGCG+AGG | + | chr1_1:65885137-65885156 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 65884230 | 65888272 | 65884230 | ID=Msa0037000;Name=Msa0037000 |
| chr1_1 | mRNA | 65884230 | 65888272 | 65884230 | ID=Msa0037000-mRNA-1;Parent=Msa0037000;Name=Msa0037000-mRNA-1;_AED=0.05;_eAED=0.05;_QI=344|0.83|0.71|1|0.83|0.71|7|0|228 |
| chr1_1 | exon | 65884230 | 65884310 | 65884230 | ID=Msa0037000-mRNA-1:exon:21228;Parent=Msa0037000-mRNA-1 |
| chr1_1 | exon | 65886116 | 65886208 | 65886116 | ID=Msa0037000-mRNA-1:exon:21227;Parent=Msa0037000-mRNA-1 |
| chr1_1 | exon | 65886295 | 65886378 | 65886295 | ID=Msa0037000-mRNA-1:exon:21226;Parent=Msa0037000-mRNA-1 |
| chr1_1 | exon | 65886480 | 65886538 | 65886480 | ID=Msa0037000-mRNA-1:exon:21225;Parent=Msa0037000-mRNA-1 |
| chr1_1 | exon | 65886623 | 65886699 | 65886623 | ID=Msa0037000-mRNA-1:exon:21224;Parent=Msa0037000-mRNA-1 |
| chr1_1 | exon | 65886904 | 65887052 | 65886904 | ID=Msa0037000-mRNA-1:exon:21223;Parent=Msa0037000-mRNA-1 |
| chr1_1 | exon | 65887788 | 65888272 | 65887788 | ID=Msa0037000-mRNA-1:exon:21222;Parent=Msa0037000-mRNA-1 |
| chr1_1 | five_prime_UTR | 65887929 | 65888272 | 65887929 | ID=Msa0037000-mRNA-1:five_prime_utr;Parent=Msa0037000-mRNA-1 |
| chr1_1 | CDS | 65887788 | 65887928 | 65887788 | ID=Msa0037000-mRNA-1:cds;Parent=Msa0037000-mRNA-1 |
| chr1_1 | CDS | 65886904 | 65887052 | 65886904 | ID=Msa0037000-mRNA-1:cds;Parent=Msa0037000-mRNA-1 |
| chr1_1 | CDS | 65886623 | 65886699 | 65886623 | ID=Msa0037000-mRNA-1:cds;Parent=Msa0037000-mRNA-1 |
| chr1_1 | CDS | 65886480 | 65886538 | 65886480 | ID=Msa0037000-mRNA-1:cds;Parent=Msa0037000-mRNA-1 |
| chr1_1 | CDS | 65886295 | 65886378 | 65886295 | ID=Msa0037000-mRNA-1:cds;Parent=Msa0037000-mRNA-1 |
| chr1_1 | CDS | 65886116 | 65886208 | 65886116 | ID=Msa0037000-mRNA-1:cds;Parent=Msa0037000-mRNA-1 |
| chr1_1 | CDS | 65884230 | 65884310 | 65884230 | ID=Msa0037000-mRNA-1:cds;Parent=Msa0037000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
