AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0069320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069320 MtrunA17_Chr1g0199821 98.198 111 2 0 1 111 90 200 3.15e-74 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069320 AT1G48850.2 90.991 111 10 0 1 111 90 200 1.53e-68 210
Msa0069320 AT1G48850.3 90.991 111 10 0 1 111 90 200 1.60e-68 210
Msa0069320 AT1G48850.1 90.991 111 10 0 1 111 90 200 3.32e-68 211

Find 100 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTATCAGTCTCCTTTC+TGG 0.119746 1_2:-37618365 None:intergenic
TAACTTCCTTGTTCGCTTCT+TGG 0.130786 1_2:-37616762 None:intergenic
GCGAGATGTCATTAGCTTAT+AGG 0.246076 1_2:+37618667 Msa0069320:CDS
GAGGGATCGGAGATTGGAAT+TGG 0.269061 1_2:-37617184 None:intergenic
AAAGCCACGTGGGCAGTAAC+TGG 0.271931 1_2:+37616875 Msa0069320:five_prime_UTR
TACATATGGGAACCACTTTC+GGG 0.279701 1_2:+37618000 Msa0069320:five_prime_UTR
TGGTCATTGGTCCTTCTTGC+TGG 0.295483 1_2:-37616840 None:intergenic
CACTTTCGGGTTACAACATA+TGG 0.302913 1_2:+37618013 Msa0069320:five_prime_UTR
ATTGCTATTGCTATTGCTAT+TGG 0.305443 1_2:-37617084 None:intergenic
CATGTATCAGTCTCCTTTCT+GGG 0.318592 1_2:-37618364 None:intergenic
TCGCAAAAGTTGAATTGAAT+TGG 0.335467 1_2:-37616977 None:intergenic
CTTCTTGCTGGTGTCTGCTT+TGG 0.340141 1_2:-37616828 None:intergenic
GTACATATGGGAACCACTTT+CGG 0.342196 1_2:+37617999 Msa0069320:five_prime_UTR
TTTCCTCTTTGATCAGTATT+GGG 0.342486 1_2:-37618535 None:intergenic
TTGCTATTGCTATTGCTATT+GGG 0.343804 1_2:-37617083 None:intergenic
ATTTCCTCTTTGATCAGTAT+TGG 0.358775 1_2:-37618536 None:intergenic
AAATACTCTTTGTTTGTTTG+AGG 0.359683 1_2:-37617029 None:intergenic
CTCTTTGTTTGTTTGAGGTT+CGG 0.360793 1_2:-37617024 None:intergenic
CCTTTCTGGGAGTTGTAATT+CGG 0.369236 1_2:-37618351 None:intergenic
CGGGCAGCTGGGAGTACATA+TGG 0.371354 1_2:+37617986 Msa0069320:five_prime_UTR
ACCATTGGAAGGGTTGCTTC+TGG 0.385048 1_2:+37618857 Msa0069320:CDS
TTTACAGAGATTCGGGCAGC+TGG 0.397683 1_2:+37617974 Msa0069320:intron
TAAAATACTCTCAGGAGTTT+CGG 0.400065 1_2:+37618387 Msa0069320:CDS
TGTCTGCTTTGGTAAGTTGT+TGG 0.406083 1_2:-37616817 None:intergenic
AAAGTTGAATTGAATTGGTT+TGG 0.413974 1_2:-37616972 None:intergenic
GGAGGAGAGGGATCGGAGAT+TGG 0.418731 1_2:-37617190 None:intergenic
GGAAGGAGTGAGGAAGGGTT+TGG 0.419419 1_2:-37617130 None:intergenic
AGGGATCGGAGATTGGAATT+GGG 0.422790 1_2:-37617183 None:intergenic
GTATGGTGTCAGATCAGTTC+AGG 0.431140 1_2:+37618722 Msa0069320:CDS
AGTTGTTGGTGAGTCGAGAA+TGG 0.450017 1_2:-37616803 None:intergenic
AGGAAGAGAAAGAATCGGTT+CGG 0.456406 1_2:-37617152 None:intergenic
GCAACCTATGACATGAAGTA+TGG 0.467320 1_2:+37618705 Msa0069320:CDS
GTTTGTTTGAGGTTCGGTAA+TGG 0.471048 1_2:-37617018 None:intergenic
AATTGAATTGGTTTGGTTGG+TGG 0.474469 1_2:-37616965 None:intergenic
GTTGTAATTCGGCTTTGACC+TGG 0.476712 1_2:-37618340 None:intergenic
TTGAATTGAATTGGTTTGGT+TGG 0.479419 1_2:-37616968 None:intergenic
CAGTATTGGGCACAAATACA+TGG 0.482313 1_2:-37618522 None:intergenic
TTGGGCACAAATACATGGAT+TGG 0.483473 1_2:-37618517 None:intergenic
GGTAGACGGAGGAGAGGGAT+CGG 0.486339 1_2:-37617197 None:intergenic
CGTGGGCAGTAACTGGGAAA+TGG 0.488897 1_2:+37616882 Msa0069320:five_prime_UTR
GGAAGAGAAAGAATCGGTTC+GGG 0.494003 1_2:-37617151 None:intergenic
GGTGTTGGATGTGTCATTGA+TGG 0.495772 1_2:+37618052 Msa0069320:five_prime_UTR
CCGAATTACAACTCCCAGAA+AGG 0.500551 1_2:+37618351 Msa0069320:CDS
ATTGGAATTGGGAGAAAGGA+AGG 0.503710 1_2:-37617172 None:intergenic
AGGAGTGAGGAAGGGTTTGG+TGG 0.507069 1_2:-37617127 None:intergenic
GTGAGTCGAGAATGGGAAGA+TGG 0.507831 1_2:-37616795 None:intergenic
GTTGTTGGTGAGTCGAGAAT+GGG 0.508037 1_2:-37616802 None:intergenic
ATTGGTTTGGTTGGTGGCAA+TGG 0.512396 1_2:-37616959 None:intergenic
GAATCTCATGGAGGAGGTGT+TGG 0.513832 1_2:+37618037 Msa0069320:five_prime_UTR
AACTCCTATATTTAGGGTGG+TGG 0.515942 1_2:+37618815 Msa0069320:intron
GGAGATTGGAATTGGGAGAA+AGG 0.519246 1_2:-37617176 None:intergenic
GGGCAGCTGGGAGTACATAT+GGG 0.522096 1_2:+37617987 Msa0069320:five_prime_UTR
ACGGAGGTAGACGGAGGAGA+GGG 0.527565 1_2:-37617202 None:intergenic
AAGGAAGGAAGAGAAAGAAT+CGG 0.529630 1_2:-37617157 None:intergenic
GACGGAGGTAGACGGAGGAG+AGG 0.531416 1_2:-37617203 None:intergenic
TTAATTGCAGGAGTTACTAC+AGG 0.532875 1_2:+37618490 Msa0069320:intron
GATACATGTAAAATACTCTC+AGG 0.533691 1_2:+37618379 Msa0069320:CDS
GTTCTTGTGTATAGGAGGCC+AGG 0.534576 1_2:+37618322 Msa0069320:intron
TGTCATAGGTTGCATCCGCA+TGG 0.536508 1_2:-37618695 None:intergenic
GACACCATACTTCATGTCAT+AGG 0.537696 1_2:-37618709 None:intergenic
TCTTCTGCTAGGGAAACCAT+TGG 0.551202 1_2:+37618842 Msa0069320:CDS
GGTTCGGGAAGGAGTGAGGA+AGG 0.551542 1_2:-37617136 None:intergenic
AAGCCACGTGGGCAGTAACT+GGG 0.560152 1_2:+37616876 Msa0069320:five_prime_UTR
GTGGTGGTAGATCTTCTGCT+AGG 0.562776 1_2:+37618831 Msa0069320:CDS
GAAACGAGGACGGAGGTAGA+CGG 0.563398 1_2:-37617211 None:intergenic
CTCTGAAGCTGATATGCAAG+AGG 0.568295 1_2:+37618096 Msa0069320:exon
ACCAGAAGCAACCCTTCCAA+TGG 0.569596 1_2:-37618858 None:intergenic
CATATGTTGTAACCCGAAAG+TGG 0.573615 1_2:-37618012 None:intergenic
TGTTTGAGGTTCGGTAATGG+TGG 0.573853 1_2:-37617015 None:intergenic
TGCTAGGGAAACCATTGGAA+GGG 0.574957 1_2:+37618847 Msa0069320:CDS
GTCATAGGTTGCATCCGCAT+GGG 0.577755 1_2:-37618694 None:intergenic
CTGCTAGGGAAACCATTGGA+AGG 0.577836 1_2:+37618846 Msa0069320:CDS
GTGAATCCAAGAAGCGAACA+AGG 0.578442 1_2:+37616756 Msa0069320:five_prime_UTR
TGGTGGTAGATCTTCTGCTA+GGG 0.582067 1_2:+37618832 Msa0069320:CDS
ACAACATATGGAGAATCTCA+TGG 0.584104 1_2:+37618025 Msa0069320:five_prime_UTR
CAAAGCAGACACCAGCAAGA+AGG 0.588312 1_2:+37616829 Msa0069320:five_prime_UTR
TGCATATCAGCTTCAGAGAG+AGG 0.589694 1_2:-37618091 None:intergenic
TTACAGAGATTCGGGCAGCT+GGG 0.592616 1_2:+37617975 Msa0069320:intron
GCTTCAGAGAGAGGGAGGCG+AGG 0.596196 1_2:-37618082 None:intergenic
GCATATCAGCTTCAGAGAGA+GGG 0.596658 1_2:-37618090 None:intergenic
AGTAACTGGGAAATGGTGGT+AGG 0.600229 1_2:+37616889 Msa0069320:five_prime_UTR
GTGCCCAATACTGATCAAAG+AGG 0.603337 1_2:+37618532 Msa0069320:CDS
TATGGAGAATCTCATGGAGG+AGG 0.607485 1_2:+37618031 Msa0069320:five_prime_UTR
TAGGTTGCATCCGCATGGGA+AGG 0.607769 1_2:-37618690 None:intergenic
ATACTCTCAGGAGTTTCGGA+AGG 0.610665 1_2:+37618391 Msa0069320:CDS
AGCTTATAGGCCTTCCCATG+CGG 0.616697 1_2:+37618680 Msa0069320:CDS
AATCGGTTCGGGAAGGAGTG+AGG 0.619223 1_2:-37617140 None:intergenic
GGTGGAGATCGAAGAAGCCA+TGG 0.622096 1_2:-37617109 None:intergenic
GCGTAATTCTAGCATAGTAG+TGG 0.622148 1_2:-37616930 None:intergenic
GTTCGGGAAGGAGTGAGGAA+GGG 0.624145 1_2:-37617135 None:intergenic
TCAGAGAGAGGGAGGCGAGG+AGG 0.627324 1_2:-37618079 None:intergenic
GAGAAAGAATCGGTTCGGGA+AGG 0.628737 1_2:-37617147 None:intergenic
TGCAAGAGGATCTTGACAGA+AGG 0.632234 1_2:+37618110 Msa0069320:CDS
AATAGCAATAGCAATAGCCA+TGG 0.636404 1_2:+37617092 Msa0069320:five_prime_UTR
GGGCAGTAACTGGGAAATGG+TGG 0.642610 1_2:+37616885 Msa0069320:five_prime_UTR
TATCAGCTTCAGAGAGAGGG+AGG 0.644707 1_2:-37618087 None:intergenic
GAAGGACCAATGACCAAACA+AGG 0.646764 1_2:+37616847 Msa0069320:five_prime_UTR
TTTCCCAGTTACTGCCCACG+TGG 0.653902 1_2:-37616879 None:intergenic
ACGAGGACGGAGGTAGACGG+AGG 0.699102 1_2:-37617208 None:intergenic
ACATATGGAGAATCTCATGG+AGG 0.763629 1_2:+37618028 Msa0069320:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTTGTTATTATTTTTA+TGG + chr1_2:37617286-37617305 Msa0069320:intron 10.0%
!!! AATTGTTGTTATTATTTTTA+TGG + chr1_2:37617286-37617305 Msa0069320:intron 10.0%
!! GAATTTCAACATTATTAAAT+TGG + chr1_2:37617567-37617586 Msa0069320:intron 15.0%
!! TGAGAATTGAAAAAAATATA+TGG + chr1_2:37617753-37617772 Msa0069320:intron 15.0%
!! GAATTTCAACATTATTAAAT+TGG + chr1_2:37617567-37617586 Msa0069320:intron 15.0%
!! TGAGAATTGAAAAAAATATA+TGG + chr1_2:37617753-37617772 Msa0069320:intron 15.0%
!! ATAACAACAATTCAAACAAA+CGG - chr1_2:37617278-37617297 None:intergenic 20.0%
!! ACAACATTAAGATTGAAAAA+TGG - chr1_2:37617380-37617399 None:intergenic 20.0%
!! TTTCAACATTATTAAATTGG+CGG + chr1_2:37617570-37617589 Msa0069320:intron 20.0%
!!! ATTTTATTGAAATGCTAGTA+AGG + chr1_2:37618220-37618239 Msa0069320:intron 20.0%
!!! TTTTATTGAAATGCTAGTAA+GGG + chr1_2:37618221-37618240 Msa0069320:intron 20.0%
!!! CTTTAAAGAATAACATTGTA+AGG + chr1_2:37618300-37618319 Msa0069320:intron 20.0%
!! TCGTATAATTTATTAATTGC+AGG + chr1_2:37618478-37618497 Msa0069320:intron 20.0%
!! TGTTCAGAAATATTCAATAA+AGG + chr1_2:37618574-37618593 Msa0069320:intron 20.0%
!!! CTAATAAAATGTTGTACTTT+TGG + chr1_2:37618625-37618644 Msa0069320:intron 20.0%
!! AAAATCCTTAAAAAATTTGC+AGG + chr1_2:37618893-37618912 Msa0069320:CDS 20.0%
!! ATAACAACAATTCAAACAAA+CGG - chr1_2:37617278-37617297 None:intergenic 20.0%
!! ACAACATTAAGATTGAAAAA+TGG - chr1_2:37617380-37617399 None:intergenic 20.0%
!! TTTCAACATTATTAAATTGG+CGG + chr1_2:37617570-37617589 Msa0069320:intron 20.0%
!!! ATTTTATTGAAATGCTAGTA+AGG + chr1_2:37618220-37618239 Msa0069320:intron 20.0%
!!! TTTTATTGAAATGCTAGTAA+GGG + chr1_2:37618221-37618240 Msa0069320:intron 20.0%
!!! CTTTAAAGAATAACATTGTA+AGG + chr1_2:37618300-37618319 Msa0069320:intron 20.0%
!! TCGTATAATTTATTAATTGC+AGG + chr1_2:37618478-37618497 Msa0069320:intron 20.0%
!! TGTTCAGAAATATTCAATAA+AGG + chr1_2:37618574-37618593 Msa0069320:intron 20.0%
!!! CTAATAAAATGTTGTACTTT+TGG + chr1_2:37618625-37618644 Msa0069320:intron 20.0%
!! AAAATCCTTAAAAAATTTGC+AGG + chr1_2:37618893-37618912 Msa0069320:CDS 20.0%
! AAAGTTGAATTGAATTGGTT+TGG - chr1_2:37616975-37616994 None:intergenic 25.0%
!! AAATACTCTTTGTTTGTTTG+AGG - chr1_2:37617032-37617051 None:intergenic 25.0%
! GAAAGTAGCAGAAAAAATAA+AGG - chr1_2:37617428-37617447 None:intergenic 25.0%
! TTGAAGTTGAAAATAAAGCT+GGG - chr1_2:37617800-37617819 None:intergenic 25.0%
!! TTTGAAGTTGAAAATAAAGC+TGG - chr1_2:37617801-37617820 None:intergenic 25.0%
! ACTTCAAATTCCAATTAGTT+TGG + chr1_2:37617813-37617832 Msa0069320:intron 25.0%
!! TGATGTATTTTACAGAGATT+CGG + chr1_2:37617966-37617985 Msa0069320:intron 25.0%
! TTACAATAGTTATGAGAAGA+CGG - chr1_2:37618159-37618178 None:intergenic 25.0%
! TAGAGGAATAATGTATAAGA+TGG + chr1_2:37618197-37618216 Msa0069320:intron 25.0%
! TCTTTACAGTGTAATAAGTT+AGG + chr1_2:37618751-37618770 Msa0069320:intron 25.0%
! AAAGTTGAATTGAATTGGTT+TGG - chr1_2:37616975-37616994 None:intergenic 25.0%
!! AAATACTCTTTGTTTGTTTG+AGG - chr1_2:37617032-37617051 None:intergenic 25.0%
! GAAAGTAGCAGAAAAAATAA+AGG - chr1_2:37617428-37617447 None:intergenic 25.0%
! TTGAAGTTGAAAATAAAGCT+GGG - chr1_2:37617800-37617819 None:intergenic 25.0%
!! TTTGAAGTTGAAAATAAAGC+TGG - chr1_2:37617801-37617820 None:intergenic 25.0%
! ACTTCAAATTCCAATTAGTT+TGG + chr1_2:37617813-37617832 Msa0069320:intron 25.0%
!! TGATGTATTTTACAGAGATT+CGG + chr1_2:37617966-37617985 Msa0069320:intron 25.0%
! TTACAATAGTTATGAGAAGA+CGG - chr1_2:37618159-37618178 None:intergenic 25.0%
! TAGAGGAATAATGTATAAGA+TGG + chr1_2:37618197-37618216 Msa0069320:intron 25.0%
! TCTTTACAGTGTAATAAGTT+AGG + chr1_2:37618751-37618770 Msa0069320:intron 25.0%
!! TTTTATCCTTGTTTGGTCAT+TGG - chr1_2:37616856-37616875 None:intergenic 30.0%
!! TTGAATTGAATTGGTTTGGT+TGG - chr1_2:37616971-37616990 None:intergenic 30.0%
TCGCAAAAGTTGAATTGAAT+TGG - chr1_2:37616980-37616999 None:intergenic 30.0%
! TTGCTATTGCTATTGCTATT+GGG - chr1_2:37617086-37617105 None:intergenic 30.0%
! ATTGCTATTGCTATTGCTAT+TGG - chr1_2:37617087-37617106 None:intergenic 30.0%
!!! ACTAACGGAGTTGTTTTTTT+GGG - chr1_2:37617237-37617256 None:intergenic 30.0%
!!! TACTAACGGAGTTGTTTTTT+TGG - chr1_2:37617238-37617257 None:intergenic 30.0%
AGTAAAGAGAAAAGAGAAAG+CGG - chr1_2:37617353-37617372 None:intergenic 30.0%
ACTTTGGTACAGAAAAATTC+AGG - chr1_2:37617468-37617487 None:intergenic 30.0%
ACTGCAATGTCAATATTGTT+AGG + chr1_2:37617620-37617639 Msa0069320:intron 30.0%
TAGTCTCAAACCAAACTAAT+TGG - chr1_2:37617826-37617845 None:intergenic 30.0%
! GATGTATTTTACAGAGATTC+GGG + chr1_2:37617967-37617986 Msa0069320:intron 30.0%
AACTATTGTAAAAAGCCCTT+TGG + chr1_2:37618168-37618187 Msa0069320:intron 30.0%
CATTATGAATGATAGCTGAT+AGG + chr1_2:37618251-37618270 Msa0069320:intron 30.0%
ATTGTAAGGTTCTTGTGTAT+AGG + chr1_2:37618314-37618333 Msa0069320:intron 30.0%
GATACATGTAAAATACTCTC+AGG + chr1_2:37618379-37618398 Msa0069320:CDS 30.0%
TAAAATACTCTCAGGAGTTT+CGG + chr1_2:37618387-37618406 Msa0069320:CDS 30.0%
TTTCCTCTTTGATCAGTATT+GGG - chr1_2:37618538-37618557 None:intergenic 30.0%
ATTTCCTCTTTGATCAGTAT+TGG - chr1_2:37618539-37618558 None:intergenic 30.0%
TTTATTAGCCACGTAAATCA+AGG - chr1_2:37618613-37618632 None:intergenic 30.0%
!!! GTACTTTTGGATACTTTTTC+AGG + chr1_2:37618638-37618657 Msa0069320:intron 30.0%
ACATCTGAACTCCTATATTT+AGG + chr1_2:37618808-37618827 Msa0069320:intron 30.0%
CATCTGAACTCCTATATTTA+GGG + chr1_2:37618809-37618828 Msa0069320:intron 30.0%
!! TTTTATCCTTGTTTGGTCAT+TGG - chr1_2:37616856-37616875 None:intergenic 30.0%
!! TTGAATTGAATTGGTTTGGT+TGG - chr1_2:37616971-37616990 None:intergenic 30.0%
TCGCAAAAGTTGAATTGAAT+TGG - chr1_2:37616980-37616999 None:intergenic 30.0%
! TTGCTATTGCTATTGCTATT+GGG - chr1_2:37617086-37617105 None:intergenic 30.0%
! ATTGCTATTGCTATTGCTAT+TGG - chr1_2:37617087-37617106 None:intergenic 30.0%
!!! ACTAACGGAGTTGTTTTTTT+GGG - chr1_2:37617237-37617256 None:intergenic 30.0%
!!! TACTAACGGAGTTGTTTTTT+TGG - chr1_2:37617238-37617257 None:intergenic 30.0%
AGTAAAGAGAAAAGAGAAAG+CGG - chr1_2:37617353-37617372 None:intergenic 30.0%
ACTTTGGTACAGAAAAATTC+AGG - chr1_2:37617468-37617487 None:intergenic 30.0%
ACTGCAATGTCAATATTGTT+AGG + chr1_2:37617620-37617639 Msa0069320:intron 30.0%
TAGTCTCAAACCAAACTAAT+TGG - chr1_2:37617826-37617845 None:intergenic 30.0%
! GATGTATTTTACAGAGATTC+GGG + chr1_2:37617967-37617986 Msa0069320:intron 30.0%
AACTATTGTAAAAAGCCCTT+TGG + chr1_2:37618168-37618187 Msa0069320:intron 30.0%
CATTATGAATGATAGCTGAT+AGG + chr1_2:37618251-37618270 Msa0069320:intron 30.0%
ATTGTAAGGTTCTTGTGTAT+AGG + chr1_2:37618314-37618333 Msa0069320:intron 30.0%
GATACATGTAAAATACTCTC+AGG + chr1_2:37618379-37618398 Msa0069320:CDS 30.0%
TAAAATACTCTCAGGAGTTT+CGG + chr1_2:37618387-37618406 Msa0069320:CDS 30.0%
TTTCCTCTTTGATCAGTATT+GGG - chr1_2:37618538-37618557 None:intergenic 30.0%
ATTTCCTCTTTGATCAGTAT+TGG - chr1_2:37618539-37618558 None:intergenic 30.0%
TTTATTAGCCACGTAAATCA+AGG - chr1_2:37618613-37618632 None:intergenic 30.0%
!!! GTACTTTTGGATACTTTTTC+AGG + chr1_2:37618638-37618657 Msa0069320:intron 30.0%
ACATCTGAACTCCTATATTT+AGG + chr1_2:37618808-37618827 Msa0069320:intron 30.0%
CATCTGAACTCCTATATTTA+GGG + chr1_2:37618809-37618828 Msa0069320:intron 30.0%
!!! GTGGCTTTTTTATCCTTGTT+TGG - chr1_2:37616863-37616882 None:intergenic 35.0%
!! AATTGAATTGGTTTGGTTGG+TGG - chr1_2:37616968-37616987 None:intergenic 35.0%
! CTCTTTGTTTGTTTGAGGTT+CGG - chr1_2:37617027-37617046 None:intergenic 35.0%
AATAGCAATAGCAATAGCCA+TGG + chr1_2:37617092-37617111 Msa0069320:five_prime_UTR 35.0%
AAGGAAGGAAGAGAAAGAAT+CGG - chr1_2:37617160-37617179 None:intergenic 35.0%
!!! CTAACGGAGTTGTTTTTTTG+GGG - chr1_2:37617236-37617255 None:intergenic 35.0%
ACAGAGAGAGAGAATACTAA+CGG - chr1_2:37617252-37617271 None:intergenic 35.0%
! ACCAAAGTTTTCCAGTTGTA+AGG + chr1_2:37617480-37617499 Msa0069320:intron 35.0%
TCCTTACAACTGGAAAACTT+TGG - chr1_2:37617484-37617503 None:intergenic 35.0%
! AAGTTTTCCAGTTGTAAGGA+TGG + chr1_2:37617484-37617503 Msa0069320:intron 35.0%
ATGAATTCCATCCTTACAAC+TGG - chr1_2:37617494-37617513 None:intergenic 35.0%
CAATGTCAATATTGTTAGGC+TGG + chr1_2:37617624-37617643 Msa0069320:intron 35.0%
TTAATCACACAAGCTGATGT+AGG + chr1_2:37617701-37617720 Msa0069320:intron 35.0%
TCTTAGGAAGTCTAGACTAA+TGG + chr1_2:37617902-37617921 Msa0069320:intron 35.0%
ACTAATGGTACTGTGATTGA+TGG + chr1_2:37617917-37617936 Msa0069320:intron 35.0%
ACAACATATGGAGAATCTCA+TGG + chr1_2:37618025-37618044 Msa0069320:five_prime_UTR 35.0%
! AGACGGTGAGATAATTTTGA+AGG - chr1_2:37618142-37618161 None:intergenic 35.0%
TATTGTAAAAAGCCCTTTGG+AGG + chr1_2:37618171-37618190 Msa0069320:intron 35.0%
TTCTTACTGCTGCTATTAAC+TGG + chr1_2:37618424-37618443 Msa0069320:intron 35.0%
TCTTACTGCTGCTATTAACT+GGG + chr1_2:37618425-37618444 Msa0069320:intron 35.0%
TTAATTGCAGGAGTTACTAC+AGG + chr1_2:37618490-37618509 Msa0069320:intron 35.0%
!!! GTGGCTTTTTTATCCTTGTT+TGG - chr1_2:37616863-37616882 None:intergenic 35.0%
!! AATTGAATTGGTTTGGTTGG+TGG - chr1_2:37616968-37616987 None:intergenic 35.0%
! CTCTTTGTTTGTTTGAGGTT+CGG - chr1_2:37617027-37617046 None:intergenic 35.0%
AATAGCAATAGCAATAGCCA+TGG + chr1_2:37617092-37617111 Msa0069320:five_prime_UTR 35.0%
AAGGAAGGAAGAGAAAGAAT+CGG - chr1_2:37617160-37617179 None:intergenic 35.0%
!!! CTAACGGAGTTGTTTTTTTG+GGG - chr1_2:37617236-37617255 None:intergenic 35.0%
ACAGAGAGAGAGAATACTAA+CGG - chr1_2:37617252-37617271 None:intergenic 35.0%
! ACCAAAGTTTTCCAGTTGTA+AGG + chr1_2:37617480-37617499 Msa0069320:intron 35.0%
TCCTTACAACTGGAAAACTT+TGG - chr1_2:37617484-37617503 None:intergenic 35.0%
! AAGTTTTCCAGTTGTAAGGA+TGG + chr1_2:37617484-37617503 Msa0069320:intron 35.0%
ATGAATTCCATCCTTACAAC+TGG - chr1_2:37617494-37617513 None:intergenic 35.0%
CAATGTCAATATTGTTAGGC+TGG + chr1_2:37617624-37617643 Msa0069320:intron 35.0%
TTAATCACACAAGCTGATGT+AGG + chr1_2:37617701-37617720 Msa0069320:intron 35.0%
TCTTAGGAAGTCTAGACTAA+TGG + chr1_2:37617902-37617921 Msa0069320:intron 35.0%
ACTAATGGTACTGTGATTGA+TGG + chr1_2:37617917-37617936 Msa0069320:intron 35.0%
ACAACATATGGAGAATCTCA+TGG + chr1_2:37618025-37618044 Msa0069320:five_prime_UTR 35.0%
! AGACGGTGAGATAATTTTGA+AGG - chr1_2:37618142-37618161 None:intergenic 35.0%
TATTGTAAAAAGCCCTTTGG+AGG + chr1_2:37618171-37618190 Msa0069320:intron 35.0%
TTCTTACTGCTGCTATTAAC+TGG + chr1_2:37618424-37618443 Msa0069320:intron 35.0%
TCTTACTGCTGCTATTAACT+GGG + chr1_2:37618425-37618444 Msa0069320:intron 35.0%
TTAATTGCAGGAGTTACTAC+AGG + chr1_2:37618490-37618509 Msa0069320:intron 35.0%
TAACTTCCTTGTTCGCTTCT+TGG - chr1_2:37616765-37616784 None:intergenic 40.0%
TGTCTGCTTTGGTAAGTTGT+TGG - chr1_2:37616820-37616839 None:intergenic 40.0%
ACAAGGATAAAAAAGCCACG+TGG + chr1_2:37616864-37616883 Msa0069320:five_prime_UTR 40.0%
CAAGGATAAAAAAGCCACGT+GGG + chr1_2:37616865-37616884 Msa0069320:five_prime_UTR 40.0%
GCGTAATTCTAGCATAGTAG+TGG - chr1_2:37616933-37616952 None:intergenic 40.0%
! GTTTGTTTGAGGTTCGGTAA+TGG - chr1_2:37617021-37617040 None:intergenic 40.0%
AGGAAGAGAAAGAATCGGTT+CGG - chr1_2:37617155-37617174 None:intergenic 40.0%
ATTGGAATTGGGAGAAAGGA+AGG - chr1_2:37617175-37617194 None:intergenic 40.0%
!!! TTTTTTTGGGGAAACGAGGA+CGG - chr1_2:37617224-37617243 None:intergenic 40.0%
!!! GTTGTTTTTTTGGGGAAACG+AGG - chr1_2:37617228-37617247 None:intergenic 40.0%
!! AATTCAGGTTGCACAAAGAG+TGG - chr1_2:37617453-37617472 None:intergenic 40.0%
ATTGACATTGCAGTTGAGCT+AGG - chr1_2:37617614-37617633 None:intergenic 40.0%
!!! GTTACTGCTACTTTTCATGC+TGG + chr1_2:37617874-37617893 Msa0069320:intron 40.0%
ATGGTACTGTGATTGATGGA+TGG + chr1_2:37617921-37617940 Msa0069320:intron 40.0%
! TGGTACTGTGATTGATGGAT+GGG + chr1_2:37617922-37617941 Msa0069320:intron 40.0%
GTACATATGGGAACCACTTT+CGG + chr1_2:37617999-37618018 Msa0069320:five_prime_UTR 40.0%
TACATATGGGAACCACTTTC+GGG + chr1_2:37618000-37618019 Msa0069320:five_prime_UTR 40.0%
CATATGTTGTAACCCGAAAG+TGG - chr1_2:37618015-37618034 None:intergenic 40.0%
!! CACTTTCGGGTTACAACATA+TGG + chr1_2:37618013-37618032 Msa0069320:five_prime_UTR 40.0%
ACATATGGAGAATCTCATGG+AGG + chr1_2:37618028-37618047 Msa0069320:five_prime_UTR 40.0%
ATTCCTCTATAGCCTCCAAA+GGG - chr1_2:37618186-37618205 None:intergenic 40.0%
TATTCCTCTATAGCCTCCAA+AGG - chr1_2:37618187-37618206 None:intergenic 40.0%
GTAAGGTTCTTGTGTATAGG+AGG + chr1_2:37618317-37618336 Msa0069320:intron 40.0%
! CCTTTCTGGGAGTTGTAATT+CGG - chr1_2:37618354-37618373 None:intergenic 40.0%
CATGTATCAGTCTCCTTTCT+GGG - chr1_2:37618367-37618386 None:intergenic 40.0%
ACATGTATCAGTCTCCTTTC+TGG - chr1_2:37618368-37618387 None:intergenic 40.0%
TTGGGCACAAATACATGGAT+TGG - chr1_2:37618520-37618539 None:intergenic 40.0%
! CAGTATTGGGCACAAATACA+TGG - chr1_2:37618525-37618544 None:intergenic 40.0%
AACCATGACCTTGATTTACG+TGG + chr1_2:37618602-37618621 Msa0069320:intron 40.0%
! GCGAGATGTCATTAGCTTAT+AGG + chr1_2:37618667-37618686 Msa0069320:CDS 40.0%
GCAACCTATGACATGAAGTA+TGG + chr1_2:37618705-37618724 Msa0069320:CDS 40.0%
GACACCATACTTCATGTCAT+AGG - chr1_2:37618712-37618731 None:intergenic 40.0%
CTGAACTCCTATATTTAGGG+TGG + chr1_2:37618812-37618831 Msa0069320:intron 40.0%
! AACTCCTATATTTAGGGTGG+TGG + chr1_2:37618815-37618834 Msa0069320:intron 40.0%
TCTACCACCACCCTAAATAT+AGG - chr1_2:37618822-37618841 None:intergenic 40.0%
TAACTTCCTTGTTCGCTTCT+TGG - chr1_2:37616765-37616784 None:intergenic 40.0%
TGTCTGCTTTGGTAAGTTGT+TGG - chr1_2:37616820-37616839 None:intergenic 40.0%
ACAAGGATAAAAAAGCCACG+TGG + chr1_2:37616864-37616883 Msa0069320:five_prime_UTR 40.0%
CAAGGATAAAAAAGCCACGT+GGG + chr1_2:37616865-37616884 Msa0069320:five_prime_UTR 40.0%
GCGTAATTCTAGCATAGTAG+TGG - chr1_2:37616933-37616952 None:intergenic 40.0%
! GTTTGTTTGAGGTTCGGTAA+TGG - chr1_2:37617021-37617040 None:intergenic 40.0%
AGGAAGAGAAAGAATCGGTT+CGG - chr1_2:37617155-37617174 None:intergenic 40.0%
ATTGGAATTGGGAGAAAGGA+AGG - chr1_2:37617175-37617194 None:intergenic 40.0%
!!! TTTTTTTGGGGAAACGAGGA+CGG - chr1_2:37617224-37617243 None:intergenic 40.0%
!!! GTTGTTTTTTTGGGGAAACG+AGG - chr1_2:37617228-37617247 None:intergenic 40.0%
!! AATTCAGGTTGCACAAAGAG+TGG - chr1_2:37617453-37617472 None:intergenic 40.0%
ATTGACATTGCAGTTGAGCT+AGG - chr1_2:37617614-37617633 None:intergenic 40.0%
!!! GTTACTGCTACTTTTCATGC+TGG + chr1_2:37617874-37617893 Msa0069320:intron 40.0%
ATGGTACTGTGATTGATGGA+TGG + chr1_2:37617921-37617940 Msa0069320:intron 40.0%
! TGGTACTGTGATTGATGGAT+GGG + chr1_2:37617922-37617941 Msa0069320:intron 40.0%
GTACATATGGGAACCACTTT+CGG + chr1_2:37617999-37618018 Msa0069320:five_prime_UTR 40.0%
TACATATGGGAACCACTTTC+GGG + chr1_2:37618000-37618019 Msa0069320:five_prime_UTR 40.0%
CATATGTTGTAACCCGAAAG+TGG - chr1_2:37618015-37618034 None:intergenic 40.0%
!! CACTTTCGGGTTACAACATA+TGG + chr1_2:37618013-37618032 Msa0069320:five_prime_UTR 40.0%
ACATATGGAGAATCTCATGG+AGG + chr1_2:37618028-37618047 Msa0069320:five_prime_UTR 40.0%
ATTCCTCTATAGCCTCCAAA+GGG - chr1_2:37618186-37618205 None:intergenic 40.0%
TATTCCTCTATAGCCTCCAA+AGG - chr1_2:37618187-37618206 None:intergenic 40.0%
GTAAGGTTCTTGTGTATAGG+AGG + chr1_2:37618317-37618336 Msa0069320:intron 40.0%
! CCTTTCTGGGAGTTGTAATT+CGG - chr1_2:37618354-37618373 None:intergenic 40.0%
CATGTATCAGTCTCCTTTCT+GGG - chr1_2:37618367-37618386 None:intergenic 40.0%
ACATGTATCAGTCTCCTTTC+TGG - chr1_2:37618368-37618387 None:intergenic 40.0%
TTGGGCACAAATACATGGAT+TGG - chr1_2:37618520-37618539 None:intergenic 40.0%
! CAGTATTGGGCACAAATACA+TGG - chr1_2:37618525-37618544 None:intergenic 40.0%
AACCATGACCTTGATTTACG+TGG + chr1_2:37618602-37618621 Msa0069320:intron 40.0%
! GCGAGATGTCATTAGCTTAT+AGG + chr1_2:37618667-37618686 Msa0069320:CDS 40.0%
GCAACCTATGACATGAAGTA+TGG + chr1_2:37618705-37618724 Msa0069320:CDS 40.0%
GACACCATACTTCATGTCAT+AGG - chr1_2:37618712-37618731 None:intergenic 40.0%
CTGAACTCCTATATTTAGGG+TGG + chr1_2:37618812-37618831 Msa0069320:intron 40.0%
! AACTCCTATATTTAGGGTGG+TGG + chr1_2:37618815-37618834 Msa0069320:intron 40.0%
TCTACCACCACCCTAAATAT+AGG - chr1_2:37618822-37618841 None:intergenic 40.0%
GTGAATCCAAGAAGCGAACA+AGG + chr1_2:37616756-37616775 Msa0069320:five_prime_UTR 45.0%
! GTTGTTGGTGAGTCGAGAAT+GGG - chr1_2:37616805-37616824 None:intergenic 45.0%
! AGTTGTTGGTGAGTCGAGAA+TGG - chr1_2:37616806-37616825 None:intergenic 45.0%
GAAGGACCAATGACCAAACA+AGG + chr1_2:37616847-37616866 Msa0069320:five_prime_UTR 45.0%
AGTAACTGGGAAATGGTGGT+AGG + chr1_2:37616889-37616908 Msa0069320:five_prime_UTR 45.0%
!! ATTGGTTTGGTTGGTGGCAA+TGG - chr1_2:37616962-37616981 None:intergenic 45.0%
! TGTTTGAGGTTCGGTAATGG+TGG - chr1_2:37617018-37617037 None:intergenic 45.0%
! GGAAGAGAAAGAATCGGTTC+GGG - chr1_2:37617154-37617173 None:intergenic 45.0%
GGAGATTGGAATTGGGAGAA+AGG - chr1_2:37617179-37617198 None:intergenic 45.0%
AGGGATCGGAGATTGGAATT+GGG - chr1_2:37617186-37617205 None:intergenic 45.0%
TTTCATGCTGGTCGCATCTT+AGG + chr1_2:37617886-37617905 Msa0069320:intron 45.0%
TATGGAGAATCTCATGGAGG+AGG + chr1_2:37618031-37618050 Msa0069320:five_prime_UTR 45.0%
! GGTGTTGGATGTGTCATTGA+TGG + chr1_2:37618052-37618071 Msa0069320:five_prime_UTR 45.0%
GCATATCAGCTTCAGAGAGA+GGG - chr1_2:37618093-37618112 None:intergenic 45.0%
TGCATATCAGCTTCAGAGAG+AGG - chr1_2:37618094-37618113 None:intergenic 45.0%
!! CTCTGAAGCTGATATGCAAG+AGG + chr1_2:37618096-37618115 Msa0069320:exon 45.0%
TGCAAGAGGATCTTGACAGA+AGG + chr1_2:37618110-37618129 Msa0069320:CDS 45.0%
! GTTGTAATTCGGCTTTGACC+TGG - chr1_2:37618343-37618362 None:intergenic 45.0%
CCGAATTACAACTCCCAGAA+AGG + chr1_2:37618351-37618370 Msa0069320:CDS 45.0%
ATACTCTCAGGAGTTTCGGA+AGG + chr1_2:37618391-37618410 Msa0069320:CDS 45.0%
GTGCCCAATACTGATCAAAG+AGG + chr1_2:37618532-37618551 Msa0069320:CDS 45.0%
AGCCACGTAAATCAAGGTCA+TGG - chr1_2:37618607-37618626 None:intergenic 45.0%
! GTATGGTGTCAGATCAGTTC+AGG + chr1_2:37618722-37618741 Msa0069320:CDS 45.0%
TGGTGGTAGATCTTCTGCTA+GGG + chr1_2:37618832-37618851 Msa0069320:CDS 45.0%
TCTTCTGCTAGGGAAACCAT+TGG + chr1_2:37618842-37618861 Msa0069320:CDS 45.0%
TGCTAGGGAAACCATTGGAA+GGG + chr1_2:37618847-37618866 Msa0069320:CDS 45.0%
GTGAATCCAAGAAGCGAACA+AGG + chr1_2:37616756-37616775 Msa0069320:five_prime_UTR 45.0%
! GTTGTTGGTGAGTCGAGAAT+GGG - chr1_2:37616805-37616824 None:intergenic 45.0%
! AGTTGTTGGTGAGTCGAGAA+TGG - chr1_2:37616806-37616825 None:intergenic 45.0%
GAAGGACCAATGACCAAACA+AGG + chr1_2:37616847-37616866 Msa0069320:five_prime_UTR 45.0%
AGTAACTGGGAAATGGTGGT+AGG + chr1_2:37616889-37616908 Msa0069320:five_prime_UTR 45.0%
!! ATTGGTTTGGTTGGTGGCAA+TGG - chr1_2:37616962-37616981 None:intergenic 45.0%
! TGTTTGAGGTTCGGTAATGG+TGG - chr1_2:37617018-37617037 None:intergenic 45.0%
! GGAAGAGAAAGAATCGGTTC+GGG - chr1_2:37617154-37617173 None:intergenic 45.0%
GGAGATTGGAATTGGGAGAA+AGG - chr1_2:37617179-37617198 None:intergenic 45.0%
AGGGATCGGAGATTGGAATT+GGG - chr1_2:37617186-37617205 None:intergenic 45.0%
TTTCATGCTGGTCGCATCTT+AGG + chr1_2:37617886-37617905 Msa0069320:intron 45.0%
TATGGAGAATCTCATGGAGG+AGG + chr1_2:37618031-37618050 Msa0069320:five_prime_UTR 45.0%
! GGTGTTGGATGTGTCATTGA+TGG + chr1_2:37618052-37618071 Msa0069320:five_prime_UTR 45.0%
GCATATCAGCTTCAGAGAGA+GGG - chr1_2:37618093-37618112 None:intergenic 45.0%
TGCATATCAGCTTCAGAGAG+AGG - chr1_2:37618094-37618113 None:intergenic 45.0%
!! CTCTGAAGCTGATATGCAAG+AGG + chr1_2:37618096-37618115 Msa0069320:exon 45.0%
TGCAAGAGGATCTTGACAGA+AGG + chr1_2:37618110-37618129 Msa0069320:CDS 45.0%
! GTTGTAATTCGGCTTTGACC+TGG - chr1_2:37618343-37618362 None:intergenic 45.0%
CCGAATTACAACTCCCAGAA+AGG + chr1_2:37618351-37618370 Msa0069320:CDS 45.0%
ATACTCTCAGGAGTTTCGGA+AGG + chr1_2:37618391-37618410 Msa0069320:CDS 45.0%
GTGCCCAATACTGATCAAAG+AGG + chr1_2:37618532-37618551 Msa0069320:CDS 45.0%
AGCCACGTAAATCAAGGTCA+TGG - chr1_2:37618607-37618626 None:intergenic 45.0%
! GTATGGTGTCAGATCAGTTC+AGG + chr1_2:37618722-37618741 Msa0069320:CDS 45.0%
TGGTGGTAGATCTTCTGCTA+GGG + chr1_2:37618832-37618851 Msa0069320:CDS 45.0%
TCTTCTGCTAGGGAAACCAT+TGG + chr1_2:37618842-37618861 Msa0069320:CDS 45.0%
TGCTAGGGAAACCATTGGAA+GGG + chr1_2:37618847-37618866 Msa0069320:CDS 45.0%
!! TATATTATTATTACATTATT+TGG + chr1_2:37617540-37617559 Msa0069320:intron 5.0%
!! TATATTATTATTACATTATT+TGG + chr1_2:37617540-37617559 Msa0069320:intron 5.0%
GTGAGTCGAGAATGGGAAGA+TGG - chr1_2:37616798-37616817 None:intergenic 50.0%
CTTCTTGCTGGTGTCTGCTT+TGG - chr1_2:37616831-37616850 None:intergenic 50.0%
CAAAGCAGACACCAGCAAGA+AGG + chr1_2:37616829-37616848 Msa0069320:five_prime_UTR 50.0%
TGGTCATTGGTCCTTCTTGC+TGG - chr1_2:37616843-37616862 None:intergenic 50.0%
!! GAGAAAGAATCGGTTCGGGA+AGG - chr1_2:37617150-37617169 None:intergenic 50.0%
GAGGGATCGGAGATTGGAAT+TGG - chr1_2:37617187-37617206 None:intergenic 50.0%
TGCAGTTGAGCTAGGCCTTA+TGG - chr1_2:37617606-37617625 None:intergenic 50.0%
TTAGGCTGGACACTTTCACC+CGG + chr1_2:37617638-37617657 Msa0069320:intron 50.0%
TCACACAAGCTGATGTAGGC+AGG + chr1_2:37617705-37617724 Msa0069320:intron 50.0%
TTTACAGAGATTCGGGCAGC+TGG + chr1_2:37617974-37617993 Msa0069320:intron 50.0%
TTACAGAGATTCGGGCAGCT+GGG + chr1_2:37617975-37617994 Msa0069320:intron 50.0%
! GAATCTCATGGAGGAGGTGT+TGG + chr1_2:37618037-37618056 Msa0069320:five_prime_UTR 50.0%
TATCAGCTTCAGAGAGAGGG+AGG - chr1_2:37618090-37618109 None:intergenic 50.0%
! AAGCCCTTTGGAGGCTATAG+AGG + chr1_2:37618180-37618199 Msa0069320:intron 50.0%
GTTCTTGTGTATAGGAGGCC+AGG + chr1_2:37618322-37618341 Msa0069320:intron 50.0%
AGCTTATAGGCCTTCCCATG+CGG + chr1_2:37618680-37618699 Msa0069320:CDS 50.0%
GTCATAGGTTGCATCCGCAT+GGG - chr1_2:37618697-37618716 None:intergenic 50.0%
TGTCATAGGTTGCATCCGCA+TGG - chr1_2:37618698-37618717 None:intergenic 50.0%
GTGGTGGTAGATCTTCTGCT+AGG + chr1_2:37618831-37618850 Msa0069320:CDS 50.0%
CTGCTAGGGAAACCATTGGA+AGG + chr1_2:37618846-37618865 Msa0069320:CDS 50.0%
ACCATTGGAAGGGTTGCTTC+TGG + chr1_2:37618857-37618876 Msa0069320:CDS 50.0%
ACCAGAAGCAACCCTTCCAA+TGG - chr1_2:37618861-37618880 None:intergenic 50.0%
GTGAGTCGAGAATGGGAAGA+TGG - chr1_2:37616798-37616817 None:intergenic 50.0%
CTTCTTGCTGGTGTCTGCTT+TGG - chr1_2:37616831-37616850 None:intergenic 50.0%
CAAAGCAGACACCAGCAAGA+AGG + chr1_2:37616829-37616848 Msa0069320:five_prime_UTR 50.0%
TGGTCATTGGTCCTTCTTGC+TGG - chr1_2:37616843-37616862 None:intergenic 50.0%
!! GAGAAAGAATCGGTTCGGGA+AGG - chr1_2:37617150-37617169 None:intergenic 50.0%
GAGGGATCGGAGATTGGAAT+TGG - chr1_2:37617187-37617206 None:intergenic 50.0%
TGCAGTTGAGCTAGGCCTTA+TGG - chr1_2:37617606-37617625 None:intergenic 50.0%
TTAGGCTGGACACTTTCACC+CGG + chr1_2:37617638-37617657 Msa0069320:intron 50.0%
TCACACAAGCTGATGTAGGC+AGG + chr1_2:37617705-37617724 Msa0069320:intron 50.0%
TTTACAGAGATTCGGGCAGC+TGG + chr1_2:37617974-37617993 Msa0069320:intron 50.0%
TTACAGAGATTCGGGCAGCT+GGG + chr1_2:37617975-37617994 Msa0069320:intron 50.0%
! GAATCTCATGGAGGAGGTGT+TGG + chr1_2:37618037-37618056 Msa0069320:five_prime_UTR 50.0%
TATCAGCTTCAGAGAGAGGG+AGG - chr1_2:37618090-37618109 None:intergenic 50.0%
! AAGCCCTTTGGAGGCTATAG+AGG + chr1_2:37618180-37618199 Msa0069320:intron 50.0%
GTTCTTGTGTATAGGAGGCC+AGG + chr1_2:37618322-37618341 Msa0069320:intron 50.0%
AGCTTATAGGCCTTCCCATG+CGG + chr1_2:37618680-37618699 Msa0069320:CDS 50.0%
GTCATAGGTTGCATCCGCAT+GGG - chr1_2:37618697-37618716 None:intergenic 50.0%
TGTCATAGGTTGCATCCGCA+TGG - chr1_2:37618698-37618717 None:intergenic 50.0%
GTGGTGGTAGATCTTCTGCT+AGG + chr1_2:37618831-37618850 Msa0069320:CDS 50.0%
CTGCTAGGGAAACCATTGGA+AGG + chr1_2:37618846-37618865 Msa0069320:CDS 50.0%
ACCATTGGAAGGGTTGCTTC+TGG + chr1_2:37618857-37618876 Msa0069320:CDS 50.0%
ACCAGAAGCAACCCTTCCAA+TGG - chr1_2:37618861-37618880 None:intergenic 50.0%
AAAGCCACGTGGGCAGTAAC+TGG + chr1_2:37616875-37616894 Msa0069320:five_prime_UTR 55.0%
AAGCCACGTGGGCAGTAACT+GGG + chr1_2:37616876-37616895 Msa0069320:five_prime_UTR 55.0%
TTTCCCAGTTACTGCCCACG+TGG - chr1_2:37616882-37616901 None:intergenic 55.0%
CGTGGGCAGTAACTGGGAAA+TGG + chr1_2:37616882-37616901 Msa0069320:five_prime_UTR 55.0%
GGGCAGTAACTGGGAAATGG+TGG + chr1_2:37616885-37616904 Msa0069320:five_prime_UTR 55.0%
GGTGGAGATCGAAGAAGCCA+TGG - chr1_2:37617112-37617131 None:intergenic 55.0%
AGGAGTGAGGAAGGGTTTGG+TGG - chr1_2:37617130-37617149 None:intergenic 55.0%
GGAAGGAGTGAGGAAGGGTT+TGG - chr1_2:37617133-37617152 None:intergenic 55.0%
GTTCGGGAAGGAGTGAGGAA+GGG - chr1_2:37617138-37617157 None:intergenic 55.0%
!! AATCGGTTCGGGAAGGAGTG+AGG - chr1_2:37617143-37617162 None:intergenic 55.0%
GAAACGAGGACGGAGGTAGA+CGG - chr1_2:37617214-37617233 None:intergenic 55.0%
!! TTTTGGGGAAACGAGGACGG+AGG - chr1_2:37617221-37617240 None:intergenic 55.0%
TAGGCTGGACACTTTCACCC+GGG + chr1_2:37617639-37617658 Msa0069320:intron 55.0%
! GGGCAGCTGGGAGTACATAT+GGG + chr1_2:37617987-37618006 Msa0069320:five_prime_UTR 55.0%
TAGGTTGCATCCGCATGGGA+AGG - chr1_2:37618693-37618712 None:intergenic 55.0%
AAAGCCACGTGGGCAGTAAC+TGG + chr1_2:37616875-37616894 Msa0069320:five_prime_UTR 55.0%
AAGCCACGTGGGCAGTAACT+GGG + chr1_2:37616876-37616895 Msa0069320:five_prime_UTR 55.0%
TTTCCCAGTTACTGCCCACG+TGG - chr1_2:37616882-37616901 None:intergenic 55.0%
CGTGGGCAGTAACTGGGAAA+TGG + chr1_2:37616882-37616901 Msa0069320:five_prime_UTR 55.0%
GGGCAGTAACTGGGAAATGG+TGG + chr1_2:37616885-37616904 Msa0069320:five_prime_UTR 55.0%
GGTGGAGATCGAAGAAGCCA+TGG - chr1_2:37617112-37617131 None:intergenic 55.0%
AGGAGTGAGGAAGGGTTTGG+TGG - chr1_2:37617130-37617149 None:intergenic 55.0%
GGAAGGAGTGAGGAAGGGTT+TGG - chr1_2:37617133-37617152 None:intergenic 55.0%
GTTCGGGAAGGAGTGAGGAA+GGG - chr1_2:37617138-37617157 None:intergenic 55.0%
!! AATCGGTTCGGGAAGGAGTG+AGG - chr1_2:37617143-37617162 None:intergenic 55.0%
GAAACGAGGACGGAGGTAGA+CGG - chr1_2:37617214-37617233 None:intergenic 55.0%
!! TTTTGGGGAAACGAGGACGG+AGG - chr1_2:37617221-37617240 None:intergenic 55.0%
TAGGCTGGACACTTTCACCC+GGG + chr1_2:37617639-37617658 Msa0069320:intron 55.0%
! GGGCAGCTGGGAGTACATAT+GGG + chr1_2:37617987-37618006 Msa0069320:five_prime_UTR 55.0%
TAGGTTGCATCCGCATGGGA+AGG - chr1_2:37618693-37618712 None:intergenic 55.0%
GGTTCGGGAAGGAGTGAGGA+AGG - chr1_2:37617139-37617158 None:intergenic 60.0%
GGAGGAGAGGGATCGGAGAT+TGG - chr1_2:37617193-37617212 None:intergenic 60.0%
GGTAGACGGAGGAGAGGGAT+CGG - chr1_2:37617200-37617219 None:intergenic 60.0%
ACGGAGGTAGACGGAGGAGA+GGG - chr1_2:37617205-37617224 None:intergenic 60.0%
GGCGGTGTCTGCTGTCCATA+AGG + chr1_2:37617588-37617607 Msa0069320:intron 60.0%
GAGCAGAACTGCGATGTCCC+GGG - chr1_2:37617659-37617678 None:intergenic 60.0%
CGAGCAGAACTGCGATGTCC+CGG - chr1_2:37617660-37617679 None:intergenic 60.0%
ACATCGCAGTTCTGCTCGCG+AGG + chr1_2:37617662-37617681 Msa0069320:intron 60.0%
! CGGGCAGCTGGGAGTACATA+TGG + chr1_2:37617986-37618005 Msa0069320:five_prime_UTR 60.0%
GGTTCGGGAAGGAGTGAGGA+AGG - chr1_2:37617139-37617158 None:intergenic 60.0%
GGAGGAGAGGGATCGGAGAT+TGG - chr1_2:37617193-37617212 None:intergenic 60.0%
GGTAGACGGAGGAGAGGGAT+CGG - chr1_2:37617200-37617219 None:intergenic 60.0%
ACGGAGGTAGACGGAGGAGA+GGG - chr1_2:37617205-37617224 None:intergenic 60.0%
GGCGGTGTCTGCTGTCCATA+AGG + chr1_2:37617588-37617607 Msa0069320:intron 60.0%
GAGCAGAACTGCGATGTCCC+GGG - chr1_2:37617659-37617678 None:intergenic 60.0%
CGAGCAGAACTGCGATGTCC+CGG - chr1_2:37617660-37617679 None:intergenic 60.0%
ACATCGCAGTTCTGCTCGCG+AGG + chr1_2:37617662-37617681 Msa0069320:intron 60.0%
! CGGGCAGCTGGGAGTACATA+TGG + chr1_2:37617986-37618005 Msa0069320:five_prime_UTR 60.0%
GACGGAGGTAGACGGAGGAG+AGG - chr1_2:37617206-37617225 None:intergenic 65.0%
ACGAGGACGGAGGTAGACGG+AGG - chr1_2:37617211-37617230 None:intergenic 65.0%
TCAGAGAGAGGGAGGCGAGG+AGG - chr1_2:37618082-37618101 None:intergenic 65.0%
GCTTCAGAGAGAGGGAGGCG+AGG - chr1_2:37618085-37618104 None:intergenic 65.0%
GACGGAGGTAGACGGAGGAG+AGG - chr1_2:37617206-37617225 None:intergenic 65.0%
ACGAGGACGGAGGTAGACGG+AGG - chr1_2:37617211-37617230 None:intergenic 65.0%
TCAGAGAGAGGGAGGCGAGG+AGG - chr1_2:37618082-37618101 None:intergenic 65.0%
GCTTCAGAGAGAGGGAGGCG+AGG - chr1_2:37618085-37618104 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 37616746 37618919 37616746 ID=Msa0069320;Name=Msa0069320
chr1_2 mRNA 37616746 37618919 37616746 ID=Msa0069320-mRNA-1;Parent=Msa0069320;Name=Msa0069320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=633|1|0.83|1|0.8|0.66|6|0|111
chr1_2 exon 37616746 37617250 37616746 ID=Msa0069320-mRNA-1:exon:11865;Parent=Msa0069320-mRNA-1
chr1_2 exon 37617981 37618131 37617981 ID=Msa0069320-mRNA-1:exon:11866;Parent=Msa0069320-mRNA-1
chr1_2 exon 37618336 37618412 37618336 ID=Msa0069320-mRNA-1:exon:11867;Parent=Msa0069320-mRNA-1
chr1_2 exon 37618500 37618558 37618500 ID=Msa0069320-mRNA-1:exon:11868;Parent=Msa0069320-mRNA-1
chr1_2 exon 37618660 37618743 37618660 ID=Msa0069320-mRNA-1:exon:11869;Parent=Msa0069320-mRNA-1
chr1_2 exon 37618830 37618919 37618830 ID=Msa0069320-mRNA-1:exon:11870;Parent=Msa0069320-mRNA-1
chr1_2 five_prime_UTR 37616746 37617250 37616746 ID=Msa0069320-mRNA-1:five_prime_utr;Parent=Msa0069320-mRNA-1
chr1_2 five_prime_UTR 37617981 37618108 37617981 ID=Msa0069320-mRNA-1:five_prime_utr;Parent=Msa0069320-mRNA-1
chr1_2 CDS 37618109 37618131 37618109 ID=Msa0069320-mRNA-1:cds;Parent=Msa0069320-mRNA-1
chr1_2 CDS 37618336 37618412 37618336 ID=Msa0069320-mRNA-1:cds;Parent=Msa0069320-mRNA-1
chr1_2 CDS 37618500 37618558 37618500 ID=Msa0069320-mRNA-1:cds;Parent=Msa0069320-mRNA-1
chr1_2 CDS 37618660 37618743 37618660 ID=Msa0069320-mRNA-1:cds;Parent=Msa0069320-mRNA-1
chr1_2 CDS 37618830 37618919 37618830 ID=Msa0069320-mRNA-1:cds;Parent=Msa0069320-mRNA-1
Gene Sequence

>Msa0069320

ATGCAAGAGGATCTTGACAGAAGGAGGCCAGGTCAAAGCCGAATTACAACTCCCAGAAAGGAGACTGATACATGTAAAATACTCTCAGGAGTTTCGGAAGGAGTTACTACAGGAACTCCAATCCATGTATTTGTGCCCAATACTGATCAAAGAGGAAATGATTATAGCGAGATGTCATTAGCTTATAGGCCTTCCCATGCGGATGCAACCTATGACATGAAGTATGGTGTCAGATCAGTTCAGGGTGGTGGTAGATCTTCTGCTAGGGAAACCATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAAAATTTGCAGGAACT
Protein sequence

>Msa0069320

MQEDLDRRRPGQSRITTPRKETDTCKILSGVSEGVTTGTPIHVFVPNTDQRGNDYSEMSLAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVASGAVAKKILKKFAGT