Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037060 | sp|K7WCI9|CPT3_SOLLC | 55.288 | 208 | 90 | 2 | 1 | 208 | 1 | 205 | 1.83e-81 | 253 |
| Msa0037060 | sp|K7WCI9|CPT3_SOLLC | 55.670 | 97 | 43 | 0 | 265 | 361 | 193 | 289 | 3.70e-32 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037060 | Msa0069210 | 0.878893 | 1.941642e-69 | -8.615850e-47 |
| Msa0037060 | Msa0210450 | 0.807103 | 5.952572e-50 | -8.615850e-47 |
| Msa0037060 | Msa0657970 | 0.803128 | 4.041288e-49 | -8.615850e-47 |
| Msa0037060 | Msa0801760 | 0.812940 | 3.292734e-51 | -8.615850e-47 |
| Msa0037060 | Msa1082500 | 0.807606 | 4.656186e-50 | -8.615850e-47 |
| Msa0037060 | Msa1384350 | 0.803783 | 2.956277e-49 | -8.615850e-47 |
| Msa0037060 | Msa1452240 | 0.808520 | 2.974220e-50 | -8.615850e-47 |
| Msa0037060 | Msa1454120 | 0.812282 | 4.586489e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037060 | MtrunA17_Chr1g0199941 | 95.580 | 362 | 14 | 1 | 1 | 362 | 1 | 360 | 0.0 | 715 |
| Msa0037060 | MtrunA17_Chr8g0370491 | 91.160 | 362 | 30 | 1 | 1 | 362 | 1 | 360 | 0.0 | 687 |
| Msa0037060 | MtrunA17_Chr5g0429771 | 33.333 | 162 | 95 | 3 | 28 | 186 | 73 | 224 | 5.03e-21 | 92.0 |
| Msa0037060 | MtrunA17_Chr5g0429791 | 33.663 | 101 | 57 | 3 | 33 | 132 | 81 | 172 | 1.62e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037060 | AT2G17570.1 | 61.202 | 183 | 71 | 0 | 6 | 188 | 12 | 194 | 4.11e-78 | 242 |
| Msa0037060 | AT2G17570.1 | 55.752 | 113 | 37 | 1 | 263 | 362 | 183 | 295 | 4.35e-34 | 127 |
| Msa0037060 | AT5G60510.1 | 45.665 | 173 | 93 | 1 | 10 | 181 | 12 | 184 | 5.47e-51 | 171 |
| Msa0037060 | AT5G60510.1 | 54.545 | 88 | 39 | 1 | 274 | 360 | 183 | 270 | 3.32e-24 | 100 |
| Msa0037060 | AT5G60500.1 | 44.253 | 174 | 96 | 1 | 9 | 181 | 10 | 183 | 1.25e-49 | 168 |
| Msa0037060 | AT5G60500.1 | 51.136 | 88 | 42 | 1 | 274 | 360 | 182 | 269 | 1.36e-22 | 96.3 |
| Msa0037060 | AT5G58770.1 | 30.061 | 163 | 106 | 3 | 33 | 192 | 77 | 234 | 4.92e-19 | 87.0 |
| Msa0037060 | AT5G58784.1 | 29.221 | 154 | 102 | 2 | 33 | 186 | 70 | 216 | 3.12e-18 | 84.7 |
| Msa0037060 | AT2G23410.1 | 30.872 | 149 | 97 | 2 | 33 | 179 | 70 | 214 | 4.61e-18 | 84.0 |
| Msa0037060 | AT5G58780.1 | 30.464 | 151 | 94 | 2 | 33 | 179 | 70 | 213 | 7.53e-18 | 83.6 |
| Msa0037060 | AT5G58780.1 | 51.923 | 52 | 25 | 0 | 299 | 350 | 242 | 293 | 1.88e-11 | 64.7 |
| Msa0037060 | AT5G58782.1 | 29.252 | 147 | 101 | 1 | 33 | 179 | 57 | 200 | 8.17e-17 | 80.1 |
| Msa0037060 | AT5G58782.1 | 47.170 | 53 | 28 | 0 | 299 | 351 | 229 | 281 | 2.16e-11 | 64.3 |
| Msa0037060 | AT5G58782.2 | 29.252 | 147 | 101 | 1 | 33 | 179 | 75 | 218 | 1.06e-16 | 80.1 |
| Msa0037060 | AT2G23400.2 | 34.579 | 107 | 67 | 1 | 33 | 139 | 70 | 173 | 2.39e-16 | 77.0 |
| Msa0037060 | AT2G23400.1 | 34.579 | 107 | 67 | 1 | 33 | 139 | 70 | 173 | 1.41e-15 | 76.6 |
Find 72 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATGTTTGAACCTCTTT+AGG | 0.235814 | 1_1:-65978667 | None:intergenic |
| TTCGTTCCATTTATCCTTGC+AGG | 0.257938 | 1_1:-65978914 | None:intergenic |
| CCTTAGATACTGTTATGAAT+TGG | 0.282278 | 1_1:+65978591 | Msa0037060:CDS |
| TGAATTTACAAGAATTAATC+AGG | 0.296880 | 1_1:+65978978 | Msa0037060:CDS |
| AAGAATCCTGCAAGGATAAA+TGG | 0.299149 | 1_1:+65978908 | Msa0037060:CDS |
| ATTTCAGGCCAAAGTACTTT+TGG | 0.319262 | 1_1:-65979369 | None:intergenic |
| GAAGTTCGGATCAAGATATC+TGG | 0.320042 | 1_1:-65979285 | None:intergenic |
| GATATCTTGATCCGAACTTC+TGG | 0.321850 | 1_1:+65979288 | Msa0037060:CDS |
| GGCGTTAGATTACATTTCAT+TGG | 0.328915 | 1_1:+65978751 | Msa0037060:CDS |
| CCAATTCATAACAGTATCTA+AGG | 0.352493 | 1_1:-65978591 | None:intergenic |
| CTTAGATACTGTTATGAATT+GGG | 0.374432 | 1_1:+65978592 | Msa0037060:CDS |
| GATTGAAGAGTTGCTTCAAC+AGG | 0.381328 | 1_1:+65978708 | Msa0037060:CDS |
| TATCGAGAAGCACATGTATA+TGG | 0.406062 | 1_1:+65979248 | Msa0037060:CDS |
| ATTGGAAACTTTATCTACCT+TGG | 0.416512 | 1_1:-65978947 | None:intergenic |
| AACTATTGACCGAACCTGTC+AGG | 0.416742 | 1_1:+65978782 | Msa0037060:CDS |
| AAGTGTCTCAGATCAATTTC+AGG | 0.424532 | 1_1:-65979384 | None:intergenic |
| AAGCAATATGATTCGGTAAA+GGG | 0.434641 | 1_1:-65978477 | None:intergenic |
| TGTAAATTCACGTTCACCAT+TGG | 0.438910 | 1_1:-65978965 | None:intergenic |
| CATATTGCTTTCATCATGGA+TGG | 0.445076 | 1_1:+65978490 | Msa0037060:CDS |
| TGCGGCAACCCTGACAGGTT+CGG | 0.448612 | 1_1:-65978791 | None:intergenic |
| ATGTAGAGTACTACAAGCTT+TGG | 0.449398 | 1_1:-65979058 | None:intergenic |
| TGTCAGGGTTGCCGCAGAAA+AGG | 0.465583 | 1_1:+65978798 | Msa0037060:CDS |
| TAAAGGGCCGGCTGATAAAA+CGG | 0.470361 | 1_1:-65978461 | None:intergenic |
| TGTATGCACCAAAAGTACTT+TGG | 0.470623 | 1_1:+65979361 | Msa0037060:CDS |
| AAATTAAAAGAACTCTCTCT+TGG | 0.473033 | 1_1:-65978843 | None:intergenic |
| GGGAGAAGGTGATGGTCATA+AGG | 0.475500 | 1_1:+65978543 | Msa0037060:CDS |
| TAAAGAGGTTCAAACATTCA+TGG | 0.476162 | 1_1:+65978669 | Msa0037060:CDS |
| AAAGCAATATGATTCGGTAA+AGG | 0.479272 | 1_1:-65978478 | None:intergenic |
| GAATCATATTGCTTTCATCA+TGG | 0.485927 | 1_1:+65978486 | Msa0037060:CDS |
| AGTATTACAAGCCACTTGCT+TGG | 0.487854 | 1_1:+65978403 | Msa0037060:CDS |
| GACGTGCCTCTCCAGAAGTT+CGG | 0.488831 | 1_1:-65979299 | None:intergenic |
| GAAACTTTATCTACCTTGGA+TGG | 0.495222 | 1_1:-65978943 | None:intergenic |
| AACATTCATGGAATTGATGC+GGG | 0.495749 | 1_1:+65978681 | Msa0037060:CDS |
| ATGATGAAAGCAATATGATT+CGG | 0.505722 | 1_1:-65978484 | None:intergenic |
| GAAAGCATTATTAATGAATA+CGG | 0.506500 | 1_1:+65978730 | Msa0037060:CDS |
| ATTACAAGCCACTTGCTTGG+AGG | 0.512105 | 1_1:+65978406 | Msa0037060:CDS |
| GAAGGTGATGGTCATAAGGC+TGG | 0.513463 | 1_1:+65978547 | Msa0037060:CDS |
| TTTCAGAAGGAAGCCTAAAG+AGG | 0.513566 | 1_1:+65978654 | Msa0037060:CDS |
| GTGAAATCACATCTTGCAAT+GGG | 0.514784 | 1_1:+65979160 | Msa0037060:CDS |
| CGGATCAAGATATCTGGGTC+AGG | 0.521553 | 1_1:-65979279 | None:intergenic |
| AATCAGGGCCCGAAAAGAAA+CGG | 0.557633 | 1_1:+65978994 | Msa0037060:CDS |
| ACTCTAATGCAGAAAAGTGC+GGG | 0.570315 | 1_1:+65978379 | None:intergenic |
| AGAAACATGGGAGAAGGTGA+TGG | 0.578866 | 1_1:+65978535 | Msa0037060:CDS |
| GAACGAAATTCAACCATCCA+AGG | 0.582528 | 1_1:+65978930 | Msa0037060:CDS |
| AAGTTCGGATCAAGATATCT+GGG | 0.585089 | 1_1:-65979284 | None:intergenic |
| CATAGCAATAATTACAGTGA+AGG | 0.585182 | 1_1:+65979138 | Msa0037060:CDS |
| ATGGGAATCGAAGGTATGCT+AGG | 0.585314 | 1_1:+65978509 | Msa0037060:CDS |
| ATATTGCTTTCATCATGGAT+GGG | 0.586307 | 1_1:+65978491 | Msa0037060:CDS |
| GAAGCACATGTATATGGCAG+TGG | 0.589411 | 1_1:+65979254 | Msa0037060:CDS |
| AGGAGGAGAAACATGGGAGA+AGG | 0.592594 | 1_1:+65978529 | Msa0037060:CDS |
| AATATAAACCTCCAAGCAAG+TGG | 0.593519 | 1_1:-65978414 | None:intergenic |
| AACTCTCTCTTGGTTGTGTG+CGG | 0.593794 | 1_1:-65978833 | None:intergenic |
| AAACATTCATGGAATTGATG+CGG | 0.594151 | 1_1:+65978680 | Msa0037060:CDS |
| ACTATTGACCGAACCTGTCA+GGG | 0.598793 | 1_1:+65978783 | Msa0037060:CDS |
| GTATGCTAGGAGGAGAAACA+TGG | 0.611091 | 1_1:+65978522 | Msa0037060:CDS |
| AAGGTAGATAAAGTTTCCAA+TGG | 0.611134 | 1_1:+65978949 | Msa0037060:CDS |
| TCAGCATTGATAATTTCAGA+AGG | 0.613884 | 1_1:+65978641 | Msa0037060:CDS |
| AATATGATTCGGTAAAGGGC+CGG | 0.614611 | 1_1:-65978473 | None:intergenic |
| GGTGAAATCACATCTTGCAA+TGG | 0.614662 | 1_1:+65979159 | Msa0037060:CDS |
| CACTCTAATGCAGAAAAGTG+CGG | 0.616442 | 1_1:+65978378 | None:intergenic |
| TGAAATTGATCTGAGACACT+TGG | 0.617482 | 1_1:+65979386 | Msa0037060:CDS |
| TTCATAACAGTATCTAAGGA+CGG | 0.633266 | 1_1:-65978587 | None:intergenic |
| TCATCATGGATGGGAATCGA+AGG | 0.636036 | 1_1:+65978500 | Msa0037060:CDS |
| GAAGAGCGAAAGTACAAGCA+TGG | 0.637636 | 1_1:+65979198 | Msa0037060:CDS |
| AATCACATCTTGCAATGGGA+CGG | 0.641231 | 1_1:+65979164 | Msa0037060:CDS |
| TGCTGTTCAAGAATCCTGCA+AGG | 0.645018 | 1_1:+65978900 | Msa0037060:CDS |
| GAATTTACAAGAATTAATCA+GGG | 0.647383 | 1_1:+65978979 | Msa0037060:CDS |
| TGATCTGAGACACTTGGTGT+GGG | 0.654089 | 1_1:+65979392 | Msa0037060:CDS |
| CTTGATCCGAACTTCTGGAG+AGG | 0.662499 | 1_1:+65979293 | Msa0037060:CDS |
| TTGATCTGAGACACTTGGTG+TGG | 0.674555 | 1_1:+65979391 | Msa0037060:CDS |
| GGAATCGAAGGTATGCTAGG+AGG | 0.684483 | 1_1:+65978512 | Msa0037060:CDS |
| TATGCTAGGAGGAGAAACAT+GGG | 0.694842 | 1_1:+65978523 | Msa0037060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAGCATTATTAATGAATA+CGG | + | chr1_1:65978730-65978749 | Msa0037060:CDS | 20.0% |
| !! | TGAATTTACAAGAATTAATC+AGG | + | chr1_1:65978978-65978997 | Msa0037060:CDS | 20.0% |
| !! | GAATTTACAAGAATTAATCA+GGG | + | chr1_1:65978979-65978998 | Msa0037060:CDS | 20.0% |
| !!! | TTTTCTTTTCCAAGTAAAAA+TGG | - | chr1_1:65979440-65979459 | None:intergenic | 20.0% |
| !!! | GAAAGCATTATTAATGAATA+CGG | + | chr1_1:65978730-65978749 | Msa0037060:CDS | 20.0% |
| !! | TGAATTTACAAGAATTAATC+AGG | + | chr1_1:65978978-65978997 | Msa0037060:CDS | 20.0% |
| !! | GAATTTACAAGAATTAATCA+GGG | + | chr1_1:65978979-65978998 | Msa0037060:CDS | 20.0% |
| !!! | TTTTCTTTTCCAAGTAAAAA+TGG | - | chr1_1:65979440-65979459 | None:intergenic | 20.0% |
| ! | ATGATGAAAGCAATATGATT+CGG | - | chr1_1:65978487-65978506 | None:intergenic | 25.0% |
| ! | CTTAGATACTGTTATGAATT+GGG | + | chr1_1:65978592-65978611 | Msa0037060:CDS | 25.0% |
| ! | AAATTAAAAGAACTCTCTCT+TGG | - | chr1_1:65978846-65978865 | None:intergenic | 25.0% |
| ! | ATGATGAAAGCAATATGATT+CGG | - | chr1_1:65978487-65978506 | None:intergenic | 25.0% |
| ! | CTTAGATACTGTTATGAATT+GGG | + | chr1_1:65978592-65978611 | Msa0037060:CDS | 25.0% |
| ! | AAATTAAAAGAACTCTCTCT+TGG | - | chr1_1:65978846-65978865 | None:intergenic | 25.0% |
| !! | AAGCAATATGATTCGGTAAA+GGG | - | chr1_1:65978480-65978499 | None:intergenic | 30.0% |
| !! | AAAGCAATATGATTCGGTAA+AGG | - | chr1_1:65978481-65978500 | None:intergenic | 30.0% |
| GAATCATATTGCTTTCATCA+TGG | + | chr1_1:65978486-65978505 | Msa0037060:CDS | 30.0% | |
| ATATTGCTTTCATCATGGAT+GGG | + | chr1_1:65978491-65978510 | Msa0037060:CDS | 30.0% | |
| TTCATAACAGTATCTAAGGA+CGG | - | chr1_1:65978590-65978609 | None:intergenic | 30.0% | |
| CCAATTCATAACAGTATCTA+AGG | - | chr1_1:65978594-65978613 | None:intergenic | 30.0% | |
| CCTTAGATACTGTTATGAAT+TGG | + | chr1_1:65978591-65978610 | Msa0037060:CDS | 30.0% | |
| !! | TCAGCATTGATAATTTCAGA+AGG | + | chr1_1:65978641-65978660 | Msa0037060:CDS | 30.0% |
| ATGAATGTTTGAACCTCTTT+AGG | - | chr1_1:65978670-65978689 | None:intergenic | 30.0% | |
| TAAAGAGGTTCAAACATTCA+TGG | + | chr1_1:65978669-65978688 | Msa0037060:CDS | 30.0% | |
| AAACATTCATGGAATTGATG+CGG | + | chr1_1:65978680-65978699 | Msa0037060:CDS | 30.0% | |
| ATTGGAAACTTTATCTACCT+TGG | - | chr1_1:65978950-65978969 | None:intergenic | 30.0% | |
| AAGGTAGATAAAGTTTCCAA+TGG | + | chr1_1:65978949-65978968 | Msa0037060:CDS | 30.0% | |
| ! | AAATCAAGACCGTTTCTTTT+CGG | - | chr1_1:65979006-65979025 | None:intergenic | 30.0% |
| CATAGCAATAATTACAGTGA+AGG | + | chr1_1:65979138-65979157 | Msa0037060:CDS | 30.0% | |
| ! | GTCTCAGTAATTTTCTTCTT+TGG | + | chr1_1:65979319-65979338 | Msa0037060:CDS | 30.0% |
| !! | AAGCAATATGATTCGGTAAA+GGG | - | chr1_1:65978480-65978499 | None:intergenic | 30.0% |
| !! | AAAGCAATATGATTCGGTAA+AGG | - | chr1_1:65978481-65978500 | None:intergenic | 30.0% |
| GAATCATATTGCTTTCATCA+TGG | + | chr1_1:65978486-65978505 | Msa0037060:CDS | 30.0% | |
| ATATTGCTTTCATCATGGAT+GGG | + | chr1_1:65978491-65978510 | Msa0037060:CDS | 30.0% | |
| TTCATAACAGTATCTAAGGA+CGG | - | chr1_1:65978590-65978609 | None:intergenic | 30.0% | |
| CCAATTCATAACAGTATCTA+AGG | - | chr1_1:65978594-65978613 | None:intergenic | 30.0% | |
| CCTTAGATACTGTTATGAAT+TGG | + | chr1_1:65978591-65978610 | Msa0037060:CDS | 30.0% | |
| !! | TCAGCATTGATAATTTCAGA+AGG | + | chr1_1:65978641-65978660 | Msa0037060:CDS | 30.0% |
| ATGAATGTTTGAACCTCTTT+AGG | - | chr1_1:65978670-65978689 | None:intergenic | 30.0% | |
| TAAAGAGGTTCAAACATTCA+TGG | + | chr1_1:65978669-65978688 | Msa0037060:CDS | 30.0% | |
| AAACATTCATGGAATTGATG+CGG | + | chr1_1:65978680-65978699 | Msa0037060:CDS | 30.0% | |
| ATTGGAAACTTTATCTACCT+TGG | - | chr1_1:65978950-65978969 | None:intergenic | 30.0% | |
| AAGGTAGATAAAGTTTCCAA+TGG | + | chr1_1:65978949-65978968 | Msa0037060:CDS | 30.0% | |
| ! | AAATCAAGACCGTTTCTTTT+CGG | - | chr1_1:65979006-65979025 | None:intergenic | 30.0% |
| CATAGCAATAATTACAGTGA+AGG | + | chr1_1:65979138-65979157 | Msa0037060:CDS | 30.0% | |
| ! | GTCTCAGTAATTTTCTTCTT+TGG | + | chr1_1:65979319-65979338 | Msa0037060:CDS | 30.0% |
| AATATAAACCTCCAAGCAAG+TGG | - | chr1_1:65978417-65978436 | None:intergenic | 35.0% | |
| !!! | ATATTTGCCGTTTTATCAGC+CGG | + | chr1_1:65978454-65978473 | Msa0037060:CDS | 35.0% |
| CATATTGCTTTCATCATGGA+TGG | + | chr1_1:65978490-65978509 | Msa0037060:CDS | 35.0% | |
| AACATTCATGGAATTGATGC+GGG | + | chr1_1:65978681-65978700 | Msa0037060:CDS | 35.0% | |
| GGCGTTAGATTACATTTCAT+TGG | + | chr1_1:65978751-65978770 | Msa0037060:CDS | 35.0% | |
| AAGAATCCTGCAAGGATAAA+TGG | + | chr1_1:65978908-65978927 | Msa0037060:CDS | 35.0% | |
| GAAACTTTATCTACCTTGGA+TGG | - | chr1_1:65978946-65978965 | None:intergenic | 35.0% | |
| TGTAAATTCACGTTCACCAT+TGG | - | chr1_1:65978968-65978987 | None:intergenic | 35.0% | |
| ! | AATCAAGACCGTTTCTTTTC+GGG | - | chr1_1:65979005-65979024 | None:intergenic | 35.0% |
| ! | ATGTAGAGTACTACAAGCTT+TGG | - | chr1_1:65979061-65979080 | None:intergenic | 35.0% |
| GTGAAATCACATCTTGCAAT+GGG | + | chr1_1:65979160-65979179 | Msa0037060:CDS | 35.0% | |
| ! | TATCGAGAAGCACATGTATA+TGG | + | chr1_1:65979248-65979267 | Msa0037060:CDS | 35.0% |
| AAGTTCGGATCAAGATATCT+GGG | - | chr1_1:65979287-65979306 | None:intergenic | 35.0% | |
| !! | GTACTTTTGGTGCATACAAA+GGG | - | chr1_1:65979359-65979378 | None:intergenic | 35.0% |
| !! | AGTACTTTTGGTGCATACAA+AGG | - | chr1_1:65979360-65979379 | None:intergenic | 35.0% |
| !! | TGTATGCACCAAAAGTACTT+TGG | + | chr1_1:65979361-65979380 | Msa0037060:CDS | 35.0% |
| !! | ATTTCAGGCCAAAGTACTTT+TGG | - | chr1_1:65979372-65979391 | None:intergenic | 35.0% |
| AAGTGTCTCAGATCAATTTC+AGG | - | chr1_1:65979387-65979406 | None:intergenic | 35.0% | |
| ! | TGAAATTGATCTGAGACACT+TGG | + | chr1_1:65979386-65979405 | Msa0037060:CDS | 35.0% |
| !! | TCAGAGACACCATTTTTACT+TGG | + | chr1_1:65979428-65979447 | Msa0037060:CDS | 35.0% |
| AATATAAACCTCCAAGCAAG+TGG | - | chr1_1:65978417-65978436 | None:intergenic | 35.0% | |
| !!! | ATATTTGCCGTTTTATCAGC+CGG | + | chr1_1:65978454-65978473 | Msa0037060:CDS | 35.0% |
| CATATTGCTTTCATCATGGA+TGG | + | chr1_1:65978490-65978509 | Msa0037060:CDS | 35.0% | |
| AACATTCATGGAATTGATGC+GGG | + | chr1_1:65978681-65978700 | Msa0037060:CDS | 35.0% | |
| GGCGTTAGATTACATTTCAT+TGG | + | chr1_1:65978751-65978770 | Msa0037060:CDS | 35.0% | |
| AAGAATCCTGCAAGGATAAA+TGG | + | chr1_1:65978908-65978927 | Msa0037060:CDS | 35.0% | |
| GAAACTTTATCTACCTTGGA+TGG | - | chr1_1:65978946-65978965 | None:intergenic | 35.0% | |
| TGTAAATTCACGTTCACCAT+TGG | - | chr1_1:65978968-65978987 | None:intergenic | 35.0% | |
| ! | AATCAAGACCGTTTCTTTTC+GGG | - | chr1_1:65979005-65979024 | None:intergenic | 35.0% |
| ! | ATGTAGAGTACTACAAGCTT+TGG | - | chr1_1:65979061-65979080 | None:intergenic | 35.0% |
| GTGAAATCACATCTTGCAAT+GGG | + | chr1_1:65979160-65979179 | Msa0037060:CDS | 35.0% | |
| ! | TATCGAGAAGCACATGTATA+TGG | + | chr1_1:65979248-65979267 | Msa0037060:CDS | 35.0% |
| AAGTTCGGATCAAGATATCT+GGG | - | chr1_1:65979287-65979306 | None:intergenic | 35.0% | |
| !! | GTACTTTTGGTGCATACAAA+GGG | - | chr1_1:65979359-65979378 | None:intergenic | 35.0% |
| !! | AGTACTTTTGGTGCATACAA+AGG | - | chr1_1:65979360-65979379 | None:intergenic | 35.0% |
| !! | TGTATGCACCAAAAGTACTT+TGG | + | chr1_1:65979361-65979380 | Msa0037060:CDS | 35.0% |
| !! | ATTTCAGGCCAAAGTACTTT+TGG | - | chr1_1:65979372-65979391 | None:intergenic | 35.0% |
| AAGTGTCTCAGATCAATTTC+AGG | - | chr1_1:65979387-65979406 | None:intergenic | 35.0% | |
| ! | TGAAATTGATCTGAGACACT+TGG | + | chr1_1:65979386-65979405 | Msa0037060:CDS | 35.0% |
| !! | TCAGAGACACCATTTTTACT+TGG | + | chr1_1:65979428-65979447 | Msa0037060:CDS | 35.0% |
| AGTATTACAAGCCACTTGCT+TGG | + | chr1_1:65978403-65978422 | Msa0037060:CDS | 40.0% | |
| !! | AATATGATTCGGTAAAGGGC+CGG | - | chr1_1:65978476-65978495 | None:intergenic | 40.0% |
| TATGCTAGGAGGAGAAACAT+GGG | + | chr1_1:65978523-65978542 | Msa0037060:CDS | 40.0% | |
| TTTCAGAAGGAAGCCTAAAG+AGG | + | chr1_1:65978654-65978673 | Msa0037060:CDS | 40.0% | |
| GATTGAAGAGTTGCTTCAAC+AGG | + | chr1_1:65978708-65978727 | Msa0037060:CDS | 40.0% | |
| ! | AACTCTCATTGCCTTTTCTG+CGG | - | chr1_1:65978812-65978831 | None:intergenic | 40.0% |
| TTCGTTCCATTTATCCTTGC+AGG | - | chr1_1:65978917-65978936 | None:intergenic | 40.0% | |
| GAACGAAATTCAACCATCCA+AGG | + | chr1_1:65978930-65978949 | Msa0037060:CDS | 40.0% | |
| GGTGAAATCACATCTTGCAA+TGG | + | chr1_1:65979159-65979178 | Msa0037060:CDS | 40.0% | |
| AATCACATCTTGCAATGGGA+CGG | + | chr1_1:65979164-65979183 | Msa0037060:CDS | 40.0% | |
| GAAGTTCGGATCAAGATATC+TGG | - | chr1_1:65979288-65979307 | None:intergenic | 40.0% | |
| GATATCTTGATCCGAACTTC+TGG | + | chr1_1:65979288-65979307 | Msa0037060:CDS | 40.0% | |
| AGTATTACAAGCCACTTGCT+TGG | + | chr1_1:65978403-65978422 | Msa0037060:CDS | 40.0% | |
| !! | AATATGATTCGGTAAAGGGC+CGG | - | chr1_1:65978476-65978495 | None:intergenic | 40.0% |
| TATGCTAGGAGGAGAAACAT+GGG | + | chr1_1:65978523-65978542 | Msa0037060:CDS | 40.0% | |
| TTTCAGAAGGAAGCCTAAAG+AGG | + | chr1_1:65978654-65978673 | Msa0037060:CDS | 40.0% | |
| GATTGAAGAGTTGCTTCAAC+AGG | + | chr1_1:65978708-65978727 | Msa0037060:CDS | 40.0% | |
| ! | AACTCTCATTGCCTTTTCTG+CGG | - | chr1_1:65978812-65978831 | None:intergenic | 40.0% |
| TTCGTTCCATTTATCCTTGC+AGG | - | chr1_1:65978917-65978936 | None:intergenic | 40.0% | |
| GAACGAAATTCAACCATCCA+AGG | + | chr1_1:65978930-65978949 | Msa0037060:CDS | 40.0% | |
| GGTGAAATCACATCTTGCAA+TGG | + | chr1_1:65979159-65979178 | Msa0037060:CDS | 40.0% | |
| AATCACATCTTGCAATGGGA+CGG | + | chr1_1:65979164-65979183 | Msa0037060:CDS | 40.0% | |
| GAAGTTCGGATCAAGATATC+TGG | - | chr1_1:65979288-65979307 | None:intergenic | 40.0% | |
| GATATCTTGATCCGAACTTC+TGG | + | chr1_1:65979288-65979307 | Msa0037060:CDS | 40.0% | |
| ATTACAAGCCACTTGCTTGG+AGG | + | chr1_1:65978406-65978425 | Msa0037060:CDS | 45.0% | |
| TAAAGGGCCGGCTGATAAAA+CGG | - | chr1_1:65978464-65978483 | None:intergenic | 45.0% | |
| TCATCATGGATGGGAATCGA+AGG | + | chr1_1:65978500-65978519 | Msa0037060:CDS | 45.0% | |
| ! | ATGGGAATCGAAGGTATGCT+AGG | + | chr1_1:65978509-65978528 | Msa0037060:CDS | 45.0% |
| GTATGCTAGGAGGAGAAACA+TGG | + | chr1_1:65978522-65978541 | Msa0037060:CDS | 45.0% | |
| AGAAACATGGGAGAAGGTGA+TGG | + | chr1_1:65978535-65978554 | Msa0037060:CDS | 45.0% | |
| AACTATTGACCGAACCTGTC+AGG | + | chr1_1:65978782-65978801 | Msa0037060:CDS | 45.0% | |
| ACTATTGACCGAACCTGTCA+GGG | + | chr1_1:65978783-65978802 | Msa0037060:CDS | 45.0% | |
| AACTCTCTCTTGGTTGTGTG+CGG | - | chr1_1:65978836-65978855 | None:intergenic | 45.0% | |
| TGCTGTTCAAGAATCCTGCA+AGG | + | chr1_1:65978900-65978919 | Msa0037060:CDS | 45.0% | |
| AATCAGGGCCCGAAAAGAAA+CGG | + | chr1_1:65978994-65979013 | Msa0037060:CDS | 45.0% | |
| ! | GAAGAGCGAAAGTACAAGCA+TGG | + | chr1_1:65979198-65979217 | Msa0037060:CDS | 45.0% |
| GAAGCACATGTATATGGCAG+TGG | + | chr1_1:65979254-65979273 | Msa0037060:CDS | 45.0% | |
| ! | TTGATCTGAGACACTTGGTG+TGG | + | chr1_1:65979391-65979410 | Msa0037060:CDS | 45.0% |
| !! | TGATCTGAGACACTTGGTGT+GGG | + | chr1_1:65979392-65979411 | Msa0037060:CDS | 45.0% |
| ATTACAAGCCACTTGCTTGG+AGG | + | chr1_1:65978406-65978425 | Msa0037060:CDS | 45.0% | |
| TAAAGGGCCGGCTGATAAAA+CGG | - | chr1_1:65978464-65978483 | None:intergenic | 45.0% | |
| TCATCATGGATGGGAATCGA+AGG | + | chr1_1:65978500-65978519 | Msa0037060:CDS | 45.0% | |
| ! | ATGGGAATCGAAGGTATGCT+AGG | + | chr1_1:65978509-65978528 | Msa0037060:CDS | 45.0% |
| GTATGCTAGGAGGAGAAACA+TGG | + | chr1_1:65978522-65978541 | Msa0037060:CDS | 45.0% | |
| AGAAACATGGGAGAAGGTGA+TGG | + | chr1_1:65978535-65978554 | Msa0037060:CDS | 45.0% | |
| AACTATTGACCGAACCTGTC+AGG | + | chr1_1:65978782-65978801 | Msa0037060:CDS | 45.0% | |
| ACTATTGACCGAACCTGTCA+GGG | + | chr1_1:65978783-65978802 | Msa0037060:CDS | 45.0% | |
| AACTCTCTCTTGGTTGTGTG+CGG | - | chr1_1:65978836-65978855 | None:intergenic | 45.0% | |
| TGCTGTTCAAGAATCCTGCA+AGG | + | chr1_1:65978900-65978919 | Msa0037060:CDS | 45.0% | |
| AATCAGGGCCCGAAAAGAAA+CGG | + | chr1_1:65978994-65979013 | Msa0037060:CDS | 45.0% | |
| ! | GAAGAGCGAAAGTACAAGCA+TGG | + | chr1_1:65979198-65979217 | Msa0037060:CDS | 45.0% |
| GAAGCACATGTATATGGCAG+TGG | + | chr1_1:65979254-65979273 | Msa0037060:CDS | 45.0% | |
| ! | TTGATCTGAGACACTTGGTG+TGG | + | chr1_1:65979391-65979410 | Msa0037060:CDS | 45.0% |
| !! | TGATCTGAGACACTTGGTGT+GGG | + | chr1_1:65979392-65979411 | Msa0037060:CDS | 45.0% |
| ! | GGAATCGAAGGTATGCTAGG+AGG | + | chr1_1:65978512-65978531 | Msa0037060:CDS | 50.0% |
| AGGAGGAGAAACATGGGAGA+AGG | + | chr1_1:65978529-65978548 | Msa0037060:CDS | 50.0% | |
| ! | GGGAGAAGGTGATGGTCATA+AGG | + | chr1_1:65978543-65978562 | Msa0037060:CDS | 50.0% |
| ! | GAAGGTGATGGTCATAAGGC+TGG | + | chr1_1:65978547-65978566 | Msa0037060:CDS | 50.0% |
| CGGATCAAGATATCTGGGTC+AGG | - | chr1_1:65979282-65979301 | None:intergenic | 50.0% | |
| ! | CTTGATCCGAACTTCTGGAG+AGG | + | chr1_1:65979293-65979312 | Msa0037060:CDS | 50.0% |
| ! | GGAATCGAAGGTATGCTAGG+AGG | + | chr1_1:65978512-65978531 | Msa0037060:CDS | 50.0% |
| AGGAGGAGAAACATGGGAGA+AGG | + | chr1_1:65978529-65978548 | Msa0037060:CDS | 50.0% | |
| ! | GGGAGAAGGTGATGGTCATA+AGG | + | chr1_1:65978543-65978562 | Msa0037060:CDS | 50.0% |
| ! | GAAGGTGATGGTCATAAGGC+TGG | + | chr1_1:65978547-65978566 | Msa0037060:CDS | 50.0% |
| CGGATCAAGATATCTGGGTC+AGG | - | chr1_1:65979282-65979301 | None:intergenic | 50.0% | |
| ! | CTTGATCCGAACTTCTGGAG+AGG | + | chr1_1:65979293-65979312 | Msa0037060:CDS | 50.0% |
| ! | TTTTCTGCGGCAACCCTGAC+AGG | - | chr1_1:65978799-65978818 | None:intergenic | 55.0% |
| TGTCAGGGTTGCCGCAGAAA+AGG | + | chr1_1:65978798-65978817 | Msa0037060:CDS | 55.0% | |
| GACGTGCCTCTCCAGAAGTT+CGG | - | chr1_1:65979302-65979321 | None:intergenic | 55.0% | |
| ! | TTTTCTGCGGCAACCCTGAC+AGG | - | chr1_1:65978799-65978818 | None:intergenic | 55.0% |
| TGTCAGGGTTGCCGCAGAAA+AGG | + | chr1_1:65978798-65978817 | Msa0037060:CDS | 55.0% | |
| GACGTGCCTCTCCAGAAGTT+CGG | - | chr1_1:65979302-65979321 | None:intergenic | 55.0% | |
| TGCGGCAACCCTGACAGGTT+CGG | - | chr1_1:65978794-65978813 | None:intergenic | 60.0% | |
| TGCGGCAACCCTGACAGGTT+CGG | - | chr1_1:65978794-65978813 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 65978385 | 65979473 | 65978385 | ID=Msa0037060;Name=Msa0037060 |
| chr1_1 | mRNA | 65978385 | 65979473 | 65978385 | ID=Msa0037060-mRNA-1;Parent=Msa0037060;Name=Msa0037060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|362 |
| chr1_1 | exon | 65978385 | 65979473 | 65978385 | ID=Msa0037060-mRNA-1:exon:21240;Parent=Msa0037060-mRNA-1 |
| chr1_1 | CDS | 65978385 | 65979473 | 65978385 | ID=Msa0037060-mRNA-1:cds;Parent=Msa0037060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
