AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1452240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452240 MtrunA17_Chr5g0393431 97.030 202 5 1 1 202 978 1178 1.31e-135 408
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452240 AT1G76630.3 59.901 202 81 0 1 202 794 995 5.58e-82 262
Msa1452240 AT1G76630.1 59.901 202 81 0 1 202 935 1136 2.18e-81 262
Msa1452240 AT1G76630.2 59.901 202 81 0 1 202 963 1164 3.07e-81 262

Find 76 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCTTCTATTTGAGAAAT+AGG 0.213656 tig0033735:-32433 Msa1452240:three_prime_UTR
ACTTCGAAGAATGCATTAAA+AGG 0.238934 tig0033735:-33851 Msa1452240:CDS
AATTTAGACAATCACCTTTC+AGG 0.264404 tig0033735:+33975 None:intergenic
TTGGATCTGTCTCAAACTTA+TGG 0.270198 tig0033735:-33919 Msa1452240:five_prime_UTR
CTCAGGACAGATTGCCATAT+TGG 0.285925 tig0033735:-33942 Msa1452240:five_prime_UTR
ATCCTTCTTGCATGCGATAT+TGG 0.303824 tig0033735:-32550 Msa1452240:CDS
TTCTTCGAAGTTCAAGTCTA+TGG 0.313139 tig0033735:+33844 None:intergenic
AGAAGGAAGCCTCGGTTCTA+AGG 0.320937 tig0033735:-33108 Msa1452240:CDS
AATCTATTTCCAGTTCATAT+TGG 0.343596 tig0033735:+33873 None:intergenic
TTCTGCTTGAGCCAACAATA+TGG 0.347487 tig0033735:+33127 None:intergenic
GAATGGTACAATTGGTCATC+AGG 0.366383 tig0033735:-33059 Msa1452240:intron
TGATAACAGTTTGATTTGAT+AGG 0.375910 tig0033735:-32355 Msa1452240:three_prime_UTR
GCACAGGCTTGTTCGTTGGC+AGG 0.385776 tig0033735:-33729 Msa1452240:CDS
GAAAGAGTATGCAAAGTGTT+TGG 0.390548 tig0033735:-33967 Msa1452240:five_prime_UTR
CCATCTGTATGGAGCTTGTC+AGG 0.397200 tig0033735:-33238 Msa1452240:CDS
GGTTTACTTTCAAATGCATT+TGG 0.398579 tig0033735:-32666 Msa1452240:CDS
GTCCTGAGAGATGGGTTATC+CGG 0.402910 tig0033735:-32586 Msa1452240:CDS
CATTAAATGTGCATTATAGA+AGG 0.418253 tig0033735:-32302 Msa1452240:three_prime_UTR
ATGCAAAGTGTTTGGAGCTC+AGG 0.421233 tig0033735:-33959 Msa1452240:five_prime_UTR
TACGTCAGGTGCCATCTGTA+TGG 0.425357 tig0033735:-33249 Msa1452240:intron
GAAATAGGTTGTTTGATAAG+TGG 0.434639 tig0033735:-32418 Msa1452240:three_prime_UTR
TGAGACAGATCCAACCAATA+TGG 0.436708 tig0033735:+33909 None:intergenic
TATGGAATGCCAATATGAAC+TGG 0.440927 tig0033735:-33901 Msa1452240:exon
GGAATAATCTTGAAAACAAA+AGG 0.454472 tig0033735:-32507 Msa1452240:exon
GTTGCACGACAGTTGAAAGT+TGG 0.456076 tig0033735:-32644 Msa1452240:CDS
ATGACCAATTGTACCATTCA+AGG 0.458996 tig0033735:+33063 None:intergenic
CAGCGAAAGCTCATGAACTT+TGG 0.462643 tig0033735:+33169 None:intergenic
TTGCACGACAGTTGAAAGTT+GGG 0.463893 tig0033735:-32643 Msa1452240:CDS
TTCGCCTTGAATGGTACAAT+TGG 0.467202 tig0033735:-33067 Msa1452240:CDS
TTAAAAGGGACGGAAATTCA+TGG 0.472036 tig0033735:-33836 Msa1452240:CDS
ACAGAAACCTTCGCCTTGAA+TGG 0.475179 tig0033735:-33076 Msa1452240:CDS
CAATATGGAGGCAAAAGGTA+AGG 0.479061 tig0033735:+33142 None:intergenic
AGCCGAAGAGTTCGTGGCAC+AGG 0.484514 tig0033735:-33745 Msa1452240:CDS
CTCTCAAAGTCCTGAGAGAT+GGG 0.489225 tig0033735:-32594 Msa1452240:CDS
AGTCTCAGCCGAAGAGTTCG+TGG 0.495633 tig0033735:-33751 Msa1452240:CDS
CGTGGCACAGGCTTGTTCGT+TGG 0.499516 tig0033735:-33733 Msa1452240:CDS
GCCTCGGTTCTAAGGAGAGA+TGG 0.500473 tig0033735:-33100 Msa1452240:CDS
CTTCTTGCATGCGATATTGG+AGG 0.504963 tig0033735:-32547 Msa1452240:CDS
GGCTATTGATAGCCCGTGAT+AGG 0.508398 tig0033735:+33195 None:intergenic
GGACAGATTGCCATATTGGT+TGG 0.510455 tig0033735:-33938 Msa1452240:five_prime_UTR
ATTTGAAAGTAAACCTCTGC+AGG 0.513056 tig0033735:+32674 None:intergenic
TCCTGAGAGATGGGTTATCC+GGG 0.516892 tig0033735:-32585 Msa1452240:CDS
CCTCTCAAAGTCCTGAGAGA+TGG 0.518118 tig0033735:-32595 Msa1452240:CDS
TTCTTGCATGCGATATTGGA+GGG 0.519687 tig0033735:-32546 Msa1452240:CDS
CTTCGAAGAATGCATTAAAA+GGG 0.521245 tig0033735:-33850 Msa1452240:CDS
GCCCGGATAACCCATCTCTC+AGG 0.521727 tig0033735:+32584 None:intergenic
ACATACCATGACATAAATAG+AGG 0.543482 tig0033735:+33675 None:intergenic
AGCTGCCTCTATTTATGTCA+TGG 0.548964 tig0033735:-33699 Msa1452240:CDS
ACGGAAATTCATGGAATATG+TGG 0.550064 tig0033735:-33827 Msa1452240:CDS
TCCATCCTAGAGATAGAGCT+TGG 0.550117 tig0033735:+32620 None:intergenic
CCTCGGTTCTAAGGAGAGAT+GGG 0.551388 tig0033735:-33099 Msa1452240:CDS
TTGGGCCAAGCTCTATCTCT+AGG 0.552731 tig0033735:-32625 Msa1452240:CDS
AAGGATTCATGTGTATTGCC+CGG 0.554046 tig0033735:+32567 None:intergenic
GCCAACAATATGGAGGCAAA+AGG 0.554730 tig0033735:+33137 None:intergenic
AAGGAACAAGTTTCACGATA+GGG 0.555344 tig0033735:-32488 Msa1452240:three_prime_UTR
CTCCAATATCGCATGCAAGA+AGG 0.558833 tig0033735:+32548 None:intergenic
AAAGGAACAAGTTTCACGAT+AGG 0.569353 tig0033735:-32489 Msa1452240:three_prime_UTR
GCCAAGCTCTATCTCTAGGA+TGG 0.570631 tig0033735:-32621 Msa1452240:CDS
AAAGCTCATGAACTTTGGTA+AGG 0.571044 tig0033735:+33174 None:intergenic
ATAGTCCTCACTTCCTATCA+CGG 0.571099 tig0033735:-33208 Msa1452240:CDS
AATATGGAGGCAAAAGGTAA+GGG 0.582387 tig0033735:+33143 None:intergenic
TTGTTTGATAAGTGGAAATG+TGG 0.584728 tig0033735:-32410 Msa1452240:three_prime_UTR
ATATTGTTGGCTCAAGCAGA+AGG 0.593092 tig0033735:-33125 Msa1452240:CDS
CCATCTCTCAGGACTTTGAG+AGG 0.593690 tig0033735:+32595 None:intergenic
AATTGTACCATTCAAGGCGA+AGG 0.593761 tig0033735:+33069 None:intergenic
TGTAGAAATGAGGCCTGCAG+AGG 0.603763 tig0033735:-32687 Msa1452240:intron
TAGTCCTCACTTCCTATCAC+GGG 0.606376 tig0033735:-33207 Msa1452240:CDS
CCTGACAAGCTCCATACAGA+TGG 0.612234 tig0033735:+33238 None:intergenic
GCTCAAGCAGAAGGAAGCCT+CGG 0.613687 tig0033735:-33116 Msa1452240:CDS
AGCCTGTGCCACGAACTCTT+CGG 0.621111 tig0033735:+33724 None:intergenic
CCCATCTCTCCTTAGAACCG+AGG 0.634911 tig0033735:+33099 None:intergenic
GAAGAATGCATTAAAAGGGA+CGG 0.635638 tig0033735:-33846 Msa1452240:CDS
AAATTCATGGAATATGTGGA+TGG 0.638131 tig0033735:-33823 Msa1452240:CDS
ATAGCCCGTGATAGGAAGTG+AGG 0.661392 tig0033735:+33203 None:intergenic
TGCTTGAGCCAACAATATGG+AGG 0.669743 tig0033735:+33130 None:intergenic
GCTGCATATAACTTAGCGAG+AGG 0.676933 tig0033735:-33801 Msa1452240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATATAAATTATTTTT+GGG + tig0033735:32810-32829 None:intergenic 0.0%
!!! AAAATAATATAAATTATTTT+TGG + tig0033735:32811-32830 None:intergenic 0.0%
!!! AAATAATATAAATTATTTTT+GGG + tig0033735:32810-32829 None:intergenic 0.0%
!!! AAAATAATATAAATTATTTT+TGG + tig0033735:32811-32830 None:intergenic 0.0%
!!! ATAAATTATTTTTGGGATTT+GGG + tig0033735:32803-32822 None:intergenic 15.0%
!!! TATAAATTATTTTTGGGATT+TGG + tig0033735:32804-32823 None:intergenic 15.0%
!!! ATAAATTATTTTTGGGATTT+GGG + tig0033735:32803-32822 None:intergenic 15.0%
!!! TATAAATTATTTTTGGGATT+TGG + tig0033735:32804-32823 None:intergenic 15.0%
!!! AATGAATTTGTTGCAAAAAA+GGG - tig0033735:32477-32496 Msa1452240:three_prime_UTR 20.0%
!!! TAAATTATTTTTGGGATTTG+GGG + tig0033735:32802-32821 None:intergenic 20.0%
!!! CATTTTGTATTAATATCCAT+AGG - tig0033735:32947-32966 Msa1452240:intron 20.0%
!! AATAAAACAATATGATCCTA+TGG + tig0033735:32966-32985 None:intergenic 20.0%
!!! ATATTGTTTTATTTTACGTC+AGG - tig0033735:32973-32992 Msa1452240:intron 20.0%
!!! AATGAATTTGTTGCAAAAAA+GGG - tig0033735:32477-32496 Msa1452240:three_prime_UTR 20.0%
!!! TAAATTATTTTTGGGATTTG+GGG + tig0033735:32802-32821 None:intergenic 20.0%
!!! CATTTTGTATTAATATCCAT+AGG - tig0033735:32947-32966 Msa1452240:intron 20.0%
!! AATAAAACAATATGATCCTA+TGG + tig0033735:32966-32985 None:intergenic 20.0%
!!! ATATTGTTTTATTTTACGTC+AGG - tig0033735:32973-32992 Msa1452240:intron 20.0%
!! AAGGTGATTGTCTAAATTTT+CGG - tig0033735:32266-32285 Msa1452240:three_prime_UTR 25.0%
! AATCTATTTCCAGTTCATAT+TGG + tig0033735:32366-32385 None:intergenic 25.0%
!!! GAATGAATTTGTTGCAAAAA+AGG - tig0033735:32476-32495 Msa1452240:three_prime_UTR 25.0%
!! TTATCCTCTAAAAAAACCTT+TGG + tig0033735:32692-32711 None:intergenic 25.0%
! TTAGAGGATAAGAAATGTTA+CGG - tig0033735:32701-32720 Msa1452240:intron 25.0%
!!! AAATTATTTTTGGGATTTGG+GGG + tig0033735:32801-32820 None:intergenic 25.0%
!! ACGAATTGATTCATTTGAAT+TGG + tig0033735:33358-33377 None:intergenic 25.0%
! CAAATGAATCAATTCGTTAA+CGG - tig0033735:33361-33380 Msa1452240:intron 25.0%
! AAATGAATCAATTCGTTAAC+GGG - tig0033735:33362-33381 Msa1452240:intron 25.0%
!!! AATGCTTTTTGATTTATGAG+TGG - tig0033735:33405-33424 Msa1452240:intron 25.0%
! TCTCATGCAATAATTGATAT+TGG - tig0033735:33475-33494 Msa1452240:intron 25.0%
! GGAATAATCTTGAAAACAAA+AGG - tig0033735:33729-33748 Msa1452240:CDS 25.0%
! TTGTCTTCTATTTGAGAAAT+AGG - tig0033735:33803-33822 Msa1452240:CDS 25.0%
!!! TGATAACAGTTTGATTTGAT+AGG - tig0033735:33881-33900 Msa1452240:CDS 25.0%
! CATTAAATGTGCATTATAGA+AGG - tig0033735:33934-33953 Msa1452240:five_prime_UTR 25.0%
!! AAGGTGATTGTCTAAATTTT+CGG - tig0033735:32266-32285 Msa1452240:three_prime_UTR 25.0%
! AATCTATTTCCAGTTCATAT+TGG + tig0033735:32366-32385 None:intergenic 25.0%
!!! GAATGAATTTGTTGCAAAAA+AGG - tig0033735:32476-32495 Msa1452240:three_prime_UTR 25.0%
!! TTATCCTCTAAAAAAACCTT+TGG + tig0033735:32692-32711 None:intergenic 25.0%
! TTAGAGGATAAGAAATGTTA+CGG - tig0033735:32701-32720 Msa1452240:intron 25.0%
!!! AAATTATTTTTGGGATTTGG+GGG + tig0033735:32801-32820 None:intergenic 25.0%
!! ACGAATTGATTCATTTGAAT+TGG + tig0033735:33358-33377 None:intergenic 25.0%
! CAAATGAATCAATTCGTTAA+CGG - tig0033735:33361-33380 Msa1452240:intron 25.0%
! AAATGAATCAATTCGTTAAC+GGG - tig0033735:33362-33381 Msa1452240:intron 25.0%
!!! AATGCTTTTTGATTTATGAG+TGG - tig0033735:33405-33424 Msa1452240:intron 25.0%
! TCTCATGCAATAATTGATAT+TGG - tig0033735:33475-33494 Msa1452240:intron 25.0%
! GGAATAATCTTGAAAACAAA+AGG - tig0033735:33729-33748 Msa1452240:CDS 25.0%
! TTGTCTTCTATTTGAGAAAT+AGG - tig0033735:33803-33822 Msa1452240:CDS 25.0%
!!! TGATAACAGTTTGATTTGAT+AGG - tig0033735:33881-33900 Msa1452240:CDS 25.0%
! CATTAAATGTGCATTATAGA+AGG - tig0033735:33934-33953 Msa1452240:five_prime_UTR 25.0%
AATTTAGACAATCACCTTTC+AGG + tig0033735:32264-32283 None:intergenic 30.0%
ACTTCGAAGAATGCATTAAA+AGG - tig0033735:32404-32423 Msa1452240:three_prime_UTR 30.0%
CTTCGAAGAATGCATTAAAA+GGG - tig0033735:32405-32424 Msa1452240:three_prime_UTR 30.0%
AAATTCATGGAATATGTGGA+TGG - tig0033735:32432-32451 Msa1452240:three_prime_UTR 30.0%
ACATACCATGACATAAATAG+AGG + tig0033735:32564-32583 None:intergenic 30.0%
TCATGGTATGTATTTGCTTT+GGG - tig0033735:32573-32592 Msa1452240:CDS 30.0%
TATCTTGCATGAATTCTAAG+TGG - tig0033735:32613-32632 Msa1452240:CDS 30.0%
ACATTACCACTTGAAATACT+CGG - tig0033735:32640-32659 Msa1452240:CDS 30.0%
! AAATTTGAAATCGACACCAA+AGG - tig0033735:32673-32692 Msa1452240:CDS 30.0%
TAGAGGATAAGAAATGTTAC+GGG - tig0033735:32702-32721 Msa1452240:intron 30.0%
!!! AATTTTTTAAGTTGCGAGTG+AGG - tig0033735:33230-33249 Msa1452240:CDS 30.0%
! ATGATAGTGACACTCTTATA+AGG + tig0033735:33297-33316 None:intergenic 30.0%
TGTCACTATCATTGAATGTT+GGG - tig0033735:33305-33324 Msa1452240:intron 30.0%
GGTTTACTTTCAAATGCATT+TGG - tig0033735:33570-33589 Msa1452240:intron 30.0%
GAAATAGGTTGTTTGATAAG+TGG - tig0033735:33818-33837 Msa1452240:CDS 30.0%
TTGTTTGATAAGTGGAAATG+TGG - tig0033735:33826-33845 Msa1452240:CDS 30.0%
AATTTAGACAATCACCTTTC+AGG + tig0033735:32264-32283 None:intergenic 30.0%
ACTTCGAAGAATGCATTAAA+AGG - tig0033735:32404-32423 Msa1452240:three_prime_UTR 30.0%
CTTCGAAGAATGCATTAAAA+GGG - tig0033735:32405-32424 Msa1452240:three_prime_UTR 30.0%
AAATTCATGGAATATGTGGA+TGG - tig0033735:32432-32451 Msa1452240:three_prime_UTR 30.0%
ACATACCATGACATAAATAG+AGG + tig0033735:32564-32583 None:intergenic 30.0%
TCATGGTATGTATTTGCTTT+GGG - tig0033735:32573-32592 Msa1452240:CDS 30.0%
TATCTTGCATGAATTCTAAG+TGG - tig0033735:32613-32632 Msa1452240:CDS 30.0%
ACATTACCACTTGAAATACT+CGG - tig0033735:32640-32659 Msa1452240:CDS 30.0%
! AAATTTGAAATCGACACCAA+AGG - tig0033735:32673-32692 Msa1452240:CDS 30.0%
TAGAGGATAAGAAATGTTAC+GGG - tig0033735:32702-32721 Msa1452240:intron 30.0%
!!! AATTTTTTAAGTTGCGAGTG+AGG - tig0033735:33230-33249 Msa1452240:CDS 30.0%
! ATGATAGTGACACTCTTATA+AGG + tig0033735:33297-33316 None:intergenic 30.0%
TGTCACTATCATTGAATGTT+GGG - tig0033735:33305-33324 Msa1452240:intron 30.0%
GGTTTACTTTCAAATGCATT+TGG - tig0033735:33570-33589 Msa1452240:intron 30.0%
GAAATAGGTTGTTTGATAAG+TGG - tig0033735:33818-33837 Msa1452240:CDS 30.0%
TTGTTTGATAAGTGGAAATG+TGG - tig0033735:33826-33845 Msa1452240:CDS 30.0%
! GAAAGAGTATGCAAAGTGTT+TGG - tig0033735:32288-32307 Msa1452240:three_prime_UTR 35.0%
TTGGATCTGTCTCAAACTTA+TGG - tig0033735:32336-32355 Msa1452240:three_prime_UTR 35.0%
TATGGAATGCCAATATGAAC+TGG - tig0033735:32354-32373 Msa1452240:three_prime_UTR 35.0%
TTCTTCGAAGTTCAAGTCTA+TGG + tig0033735:32395-32414 None:intergenic 35.0%
GAAGAATGCATTAAAAGGGA+CGG - tig0033735:32409-32428 Msa1452240:three_prime_UTR 35.0%
TTAAAAGGGACGGAAATTCA+TGG - tig0033735:32419-32438 Msa1452240:three_prime_UTR 35.0%
ACGGAAATTCATGGAATATG+TGG - tig0033735:32428-32447 Msa1452240:three_prime_UTR 35.0%
GTCATGGTATGTATTTGCTT+TGG - tig0033735:32572-32591 Msa1452240:CDS 35.0%
AATTGACCGAGTATTTCAAG+TGG + tig0033735:32649-32668 None:intergenic 35.0%
!!! GACACCAAAGGTTTTTTTAG+AGG - tig0033735:32685-32704 Msa1452240:CDS 35.0%
AGTATCCATTCACGCAAAAA+AGG + tig0033735:32857-32876 None:intergenic 35.0%
AATGTTCATCATTGATGCAC+AGG + tig0033735:32931-32950 None:intergenic 35.0%
AAAGCTCATGAACTTTGGTA+AGG + tig0033735:33065-33084 None:intergenic 35.0%
AATATGGAGGCAAAAGGTAA+GGG + tig0033735:33096-33115 None:intergenic 35.0%
ATGACCAATTGTACCATTCA+AGG + tig0033735:33176-33195 None:intergenic 35.0%
TGACACTCTTATAAGGAAGA+AGG + tig0033735:33290-33309 None:intergenic 35.0%
! GTGTCACTATCATTGAATGT+TGG - tig0033735:33304-33323 Msa1452240:intron 35.0%
GTCACTATCATTGAATGTTG+GGG - tig0033735:33306-33325 Msa1452240:intron 35.0%
TGAGATTCTGCTGATCTATT+GGG + tig0033735:33434-33453 None:intergenic 35.0%
ATGAGATTCTGCTGATCTAT+TGG + tig0033735:33435-33454 None:intergenic 35.0%
!!! GCTACTTTTGTGTAGAAATG+AGG - tig0033735:33539-33558 Msa1452240:intron 35.0%
ATTTGAAAGTAAACCTCTGC+AGG + tig0033735:33565-33584 None:intergenic 35.0%
AAAGGAACAAGTTTCACGAT+AGG - tig0033735:33747-33766 Msa1452240:CDS 35.0%
AAGGAACAAGTTTCACGATA+GGG - tig0033735:33748-33767 Msa1452240:CDS 35.0%
! GAAAGAGTATGCAAAGTGTT+TGG - tig0033735:32288-32307 Msa1452240:three_prime_UTR 35.0%
TTGGATCTGTCTCAAACTTA+TGG - tig0033735:32336-32355 Msa1452240:three_prime_UTR 35.0%
TATGGAATGCCAATATGAAC+TGG - tig0033735:32354-32373 Msa1452240:three_prime_UTR 35.0%
TTCTTCGAAGTTCAAGTCTA+TGG + tig0033735:32395-32414 None:intergenic 35.0%
GAAGAATGCATTAAAAGGGA+CGG - tig0033735:32409-32428 Msa1452240:three_prime_UTR 35.0%
TTAAAAGGGACGGAAATTCA+TGG - tig0033735:32419-32438 Msa1452240:three_prime_UTR 35.0%
ACGGAAATTCATGGAATATG+TGG - tig0033735:32428-32447 Msa1452240:three_prime_UTR 35.0%
GTCATGGTATGTATTTGCTT+TGG - tig0033735:32572-32591 Msa1452240:CDS 35.0%
AATTGACCGAGTATTTCAAG+TGG + tig0033735:32649-32668 None:intergenic 35.0%
!!! GACACCAAAGGTTTTTTTAG+AGG - tig0033735:32685-32704 Msa1452240:CDS 35.0%
AGTATCCATTCACGCAAAAA+AGG + tig0033735:32857-32876 None:intergenic 35.0%
AATGTTCATCATTGATGCAC+AGG + tig0033735:32931-32950 None:intergenic 35.0%
AAAGCTCATGAACTTTGGTA+AGG + tig0033735:33065-33084 None:intergenic 35.0%
AATATGGAGGCAAAAGGTAA+GGG + tig0033735:33096-33115 None:intergenic 35.0%
ATGACCAATTGTACCATTCA+AGG + tig0033735:33176-33195 None:intergenic 35.0%
TGACACTCTTATAAGGAAGA+AGG + tig0033735:33290-33309 None:intergenic 35.0%
! GTGTCACTATCATTGAATGT+TGG - tig0033735:33304-33323 Msa1452240:intron 35.0%
GTCACTATCATTGAATGTTG+GGG - tig0033735:33306-33325 Msa1452240:intron 35.0%
TGAGATTCTGCTGATCTATT+GGG + tig0033735:33434-33453 None:intergenic 35.0%
ATGAGATTCTGCTGATCTAT+TGG + tig0033735:33435-33454 None:intergenic 35.0%
!!! GCTACTTTTGTGTAGAAATG+AGG - tig0033735:33539-33558 Msa1452240:intron 35.0%
ATTTGAAAGTAAACCTCTGC+AGG + tig0033735:33565-33584 None:intergenic 35.0%
AAAGGAACAAGTTTCACGAT+AGG - tig0033735:33747-33766 Msa1452240:CDS 35.0%
AAGGAACAAGTTTCACGATA+GGG - tig0033735:33748-33767 Msa1452240:CDS 35.0%
TGAGACAGATCCAACCAATA+TGG + tig0033735:32330-32349 None:intergenic 40.0%
AGCTGCCTCTATTTATGTCA+TGG - tig0033735:32556-32575 Msa1452240:CDS 40.0%
!!! GATCTCCTTTTTTGCGTGAA+TGG - tig0033735:32849-32868 Msa1452240:intron 40.0%
CGTGAATGGATACTGTCAAT+TGG - tig0033735:32863-32882 Msa1452240:intron 40.0%
ATAGTCCTCACTTCCTATCA+CGG - tig0033735:33028-33047 Msa1452240:intron 40.0%
CAATATGGAGGCAAAAGGTA+AGG + tig0033735:33097-33116 None:intergenic 40.0%
! ACCTTTTGCCTCCATATTGT+TGG - tig0033735:33098-33117 Msa1452240:CDS 40.0%
TTCTGCTTGAGCCAACAATA+TGG + tig0033735:33112-33131 None:intergenic 40.0%
!! ATATTGTTGGCTCAAGCAGA+AGG - tig0033735:33111-33130 Msa1452240:CDS 40.0%
AATTGTACCATTCAAGGCGA+AGG + tig0033735:33170-33189 None:intergenic 40.0%
TTCGCCTTGAATGGTACAAT+TGG - tig0033735:33169-33188 Msa1452240:CDS 40.0%
GAATGGTACAATTGGTCATC+AGG - tig0033735:33177-33196 Msa1452240:CDS 40.0%
!! TTTAAGTTGCGAGTGAGGAA+TGG - tig0033735:33235-33254 Msa1452240:CDS 40.0%
! TTCGTTAACGGGTATTTGCA+AGG - tig0033735:33373-33392 Msa1452240:intron 40.0%
AGTAGCAGACATTCATCTAG+AGG + tig0033735:33525-33544 None:intergenic 40.0%
TTGCACGACAGTTGAAAGTT+GGG - tig0033735:33593-33612 Msa1452240:intron 40.0%
AAGGATTCATGTGTATTGCC+CGG + tig0033735:33672-33691 None:intergenic 40.0%
ATCCTTCTTGCATGCGATAT+TGG - tig0033735:33686-33705 Msa1452240:CDS 40.0%
TTCTTGCATGCGATATTGGA+GGG - tig0033735:33690-33709 Msa1452240:CDS 40.0%
! GAGGGTTTTACAGAAGCTAA+TGG - tig0033735:33708-33727 Msa1452240:CDS 40.0%
TGAGACAGATCCAACCAATA+TGG + tig0033735:32330-32349 None:intergenic 40.0%
AGCTGCCTCTATTTATGTCA+TGG - tig0033735:32556-32575 Msa1452240:CDS 40.0%
!!! GATCTCCTTTTTTGCGTGAA+TGG - tig0033735:32849-32868 Msa1452240:intron 40.0%
CGTGAATGGATACTGTCAAT+TGG - tig0033735:32863-32882 Msa1452240:intron 40.0%
ATAGTCCTCACTTCCTATCA+CGG - tig0033735:33028-33047 Msa1452240:intron 40.0%
CAATATGGAGGCAAAAGGTA+AGG + tig0033735:33097-33116 None:intergenic 40.0%
! ACCTTTTGCCTCCATATTGT+TGG - tig0033735:33098-33117 Msa1452240:CDS 40.0%
TTCTGCTTGAGCCAACAATA+TGG + tig0033735:33112-33131 None:intergenic 40.0%
!! ATATTGTTGGCTCAAGCAGA+AGG - tig0033735:33111-33130 Msa1452240:CDS 40.0%
AATTGTACCATTCAAGGCGA+AGG + tig0033735:33170-33189 None:intergenic 40.0%
TTCGCCTTGAATGGTACAAT+TGG - tig0033735:33169-33188 Msa1452240:CDS 40.0%
GAATGGTACAATTGGTCATC+AGG - tig0033735:33177-33196 Msa1452240:CDS 40.0%
!! TTTAAGTTGCGAGTGAGGAA+TGG - tig0033735:33235-33254 Msa1452240:CDS 40.0%
! TTCGTTAACGGGTATTTGCA+AGG - tig0033735:33373-33392 Msa1452240:intron 40.0%
AGTAGCAGACATTCATCTAG+AGG + tig0033735:33525-33544 None:intergenic 40.0%
TTGCACGACAGTTGAAAGTT+GGG - tig0033735:33593-33612 Msa1452240:intron 40.0%
AAGGATTCATGTGTATTGCC+CGG + tig0033735:33672-33691 None:intergenic 40.0%
ATCCTTCTTGCATGCGATAT+TGG - tig0033735:33686-33705 Msa1452240:CDS 40.0%
TTCTTGCATGCGATATTGGA+GGG - tig0033735:33690-33709 Msa1452240:CDS 40.0%
! GAGGGTTTTACAGAAGCTAA+TGG - tig0033735:33708-33727 Msa1452240:CDS 40.0%
! ATGCAAAGTGTTTGGAGCTC+AGG - tig0033735:32296-32315 Msa1452240:three_prime_UTR 45.0%
CTCAGGACAGATTGCCATAT+TGG - tig0033735:32313-32332 Msa1452240:three_prime_UTR 45.0%
GGACAGATTGCCATATTGGT+TGG - tig0033735:32317-32336 Msa1452240:three_prime_UTR 45.0%
GCTGCATATAACTTAGCGAG+AGG - tig0033735:32454-32473 Msa1452240:three_prime_UTR 45.0%
AGGTAGAGATGAGGGCAAAA+AGG + tig0033735:32908-32927 None:intergenic 45.0%
GTTCATCATTGATGCACAGG+AGG + tig0033735:32928-32947 None:intergenic 45.0%
TAGTCCTCACTTCCTATCAC+GGG - tig0033735:33029-33048 Msa1452240:intron 45.0%
CAGCGAAAGCTCATGAACTT+TGG + tig0033735:33070-33089 None:intergenic 45.0%
GCCAACAATATGGAGGCAAA+AGG + tig0033735:33102-33121 None:intergenic 45.0%
TGCTTGAGCCAACAATATGG+AGG + tig0033735:33109-33128 None:intergenic 45.0%
ACAGAAACCTTCGCCTTGAA+TGG - tig0033735:33160-33179 Msa1452240:CDS 45.0%
GGGTATTTGCAAGGTTGAGT+TGG - tig0033735:33382-33401 Msa1452240:intron 45.0%
GTTGCACGACAGTTGAAAGT+TGG - tig0033735:33592-33611 Msa1452240:intron 45.0%
TCCATCCTAGAGATAGAGCT+TGG + tig0033735:33619-33638 None:intergenic 45.0%
CTCTCAAAGTCCTGAGAGAT+GGG - tig0033735:33642-33661 Msa1452240:intron 45.0%
CTCCAATATCGCATGCAAGA+AGG + tig0033735:33691-33710 None:intergenic 45.0%
CTTCTTGCATGCGATATTGG+AGG - tig0033735:33689-33708 Msa1452240:CDS 45.0%
! ATGCAAAGTGTTTGGAGCTC+AGG - tig0033735:32296-32315 Msa1452240:three_prime_UTR 45.0%
CTCAGGACAGATTGCCATAT+TGG - tig0033735:32313-32332 Msa1452240:three_prime_UTR 45.0%
GGACAGATTGCCATATTGGT+TGG - tig0033735:32317-32336 Msa1452240:three_prime_UTR 45.0%
GCTGCATATAACTTAGCGAG+AGG - tig0033735:32454-32473 Msa1452240:three_prime_UTR 45.0%
AGGTAGAGATGAGGGCAAAA+AGG + tig0033735:32908-32927 None:intergenic 45.0%
GTTCATCATTGATGCACAGG+AGG + tig0033735:32928-32947 None:intergenic 45.0%
TAGTCCTCACTTCCTATCAC+GGG - tig0033735:33029-33048 Msa1452240:intron 45.0%
CAGCGAAAGCTCATGAACTT+TGG + tig0033735:33070-33089 None:intergenic 45.0%
GCCAACAATATGGAGGCAAA+AGG + tig0033735:33102-33121 None:intergenic 45.0%
TGCTTGAGCCAACAATATGG+AGG + tig0033735:33109-33128 None:intergenic 45.0%
ACAGAAACCTTCGCCTTGAA+TGG - tig0033735:33160-33179 Msa1452240:CDS 45.0%
GGGTATTTGCAAGGTTGAGT+TGG - tig0033735:33382-33401 Msa1452240:intron 45.0%
GTTGCACGACAGTTGAAAGT+TGG - tig0033735:33592-33611 Msa1452240:intron 45.0%
TCCATCCTAGAGATAGAGCT+TGG + tig0033735:33619-33638 None:intergenic 45.0%
CTCTCAAAGTCCTGAGAGAT+GGG - tig0033735:33642-33661 Msa1452240:intron 45.0%
CTCCAATATCGCATGCAAGA+AGG + tig0033735:33691-33710 None:intergenic 45.0%
CTTCTTGCATGCGATATTGG+AGG - tig0033735:33689-33708 Msa1452240:CDS 45.0%
!!! ACTTAAAAAATTATAATTTT+TGG + tig0033735:33222-33241 None:intergenic 5.0%
!!! ACTTAAAAAATTATAATTTT+TGG + tig0033735:33222-33241 None:intergenic 5.0%
TGCACAGGAGGTAGAGATGA+GGG + tig0033735:32916-32935 None:intergenic 50.0%
ATGCACAGGAGGTAGAGATG+AGG + tig0033735:32917-32936 None:intergenic 50.0%
! TACGTCAGGTGCCATCTGTA+TGG - tig0033735:32987-33006 Msa1452240:intron 50.0%
CCTGACAAGCTCCATACAGA+TGG + tig0033735:33001-33020 None:intergenic 50.0%
CCATCTGTATGGAGCTTGTC+AGG - tig0033735:32998-33017 Msa1452240:intron 50.0%
ATAGCCCGTGATAGGAAGTG+AGG + tig0033735:33036-33055 None:intergenic 50.0%
! GGCTATTGATAGCCCGTGAT+AGG + tig0033735:33044-33063 None:intergenic 50.0%
AGAAGGAAGCCTCGGTTCTA+AGG - tig0033735:33128-33147 Msa1452240:CDS 50.0%
!! CCTCGGTTCTAAGGAGAGAT+GGG - tig0033735:33137-33156 Msa1452240:CDS 50.0%
TGAATGTTGGGGCTGTGATG+CGG - tig0033735:33317-33336 Msa1452240:intron 50.0%
TGTAGAAATGAGGCCTGCAG+AGG - tig0033735:33549-33568 Msa1452240:intron 50.0%
TTGGGCCAAGCTCTATCTCT+AGG - tig0033735:33611-33630 Msa1452240:intron 50.0%
! GCCAAGCTCTATCTCTAGGA+TGG - tig0033735:33615-33634 Msa1452240:intron 50.0%
CCATCTCTCAGGACTTTGAG+AGG + tig0033735:33644-33663 None:intergenic 50.0%
CCTCTCAAAGTCCTGAGAGA+TGG - tig0033735:33641-33660 Msa1452240:intron 50.0%
!! GTCCTGAGAGATGGGTTATC+CGG - tig0033735:33650-33669 Msa1452240:intron 50.0%
!! TCCTGAGAGATGGGTTATCC+GGG - tig0033735:33651-33670 Msa1452240:intron 50.0%
TGCACAGGAGGTAGAGATGA+GGG + tig0033735:32916-32935 None:intergenic 50.0%
ATGCACAGGAGGTAGAGATG+AGG + tig0033735:32917-32936 None:intergenic 50.0%
! TACGTCAGGTGCCATCTGTA+TGG - tig0033735:32987-33006 Msa1452240:intron 50.0%
CCTGACAAGCTCCATACAGA+TGG + tig0033735:33001-33020 None:intergenic 50.0%
CCATCTGTATGGAGCTTGTC+AGG - tig0033735:32998-33017 Msa1452240:intron 50.0%
ATAGCCCGTGATAGGAAGTG+AGG + tig0033735:33036-33055 None:intergenic 50.0%
! GGCTATTGATAGCCCGTGAT+AGG + tig0033735:33044-33063 None:intergenic 50.0%
AGAAGGAAGCCTCGGTTCTA+AGG - tig0033735:33128-33147 Msa1452240:CDS 50.0%
!! CCTCGGTTCTAAGGAGAGAT+GGG - tig0033735:33137-33156 Msa1452240:CDS 50.0%
TGAATGTTGGGGCTGTGATG+CGG - tig0033735:33317-33336 Msa1452240:intron 50.0%
TGTAGAAATGAGGCCTGCAG+AGG - tig0033735:33549-33568 Msa1452240:intron 50.0%
TTGGGCCAAGCTCTATCTCT+AGG - tig0033735:33611-33630 Msa1452240:intron 50.0%
! GCCAAGCTCTATCTCTAGGA+TGG - tig0033735:33615-33634 Msa1452240:intron 50.0%
CCATCTCTCAGGACTTTGAG+AGG + tig0033735:33644-33663 None:intergenic 50.0%
CCTCTCAAAGTCCTGAGAGA+TGG - tig0033735:33641-33660 Msa1452240:intron 50.0%
!! GTCCTGAGAGATGGGTTATC+CGG - tig0033735:33650-33669 Msa1452240:intron 50.0%
!! TCCTGAGAGATGGGTTATCC+GGG - tig0033735:33651-33670 Msa1452240:intron 50.0%
AGTCTCAGCCGAAGAGTTCG+TGG - tig0033735:32504-32523 Msa1452240:exon 55.0%
AGCCTGTGCCACGAACTCTT+CGG + tig0033735:32515-32534 None:intergenic 55.0%
GCTCAAGCAGAAGGAAGCCT+CGG - tig0033735:33120-33139 Msa1452240:CDS 55.0%
!! GCCTCGGTTCTAAGGAGAGA+TGG - tig0033735:33136-33155 Msa1452240:CDS 55.0%
CCCATCTCTCCTTAGAACCG+AGG + tig0033735:33140-33159 None:intergenic 55.0%
GAATGTTGGGGCTGTGATGC+GGG - tig0033735:33318-33337 Msa1452240:intron 55.0%
AGTCTCAGCCGAAGAGTTCG+TGG - tig0033735:32504-32523 Msa1452240:exon 55.0%
AGCCTGTGCCACGAACTCTT+CGG + tig0033735:32515-32534 None:intergenic 55.0%
GCTCAAGCAGAAGGAAGCCT+CGG - tig0033735:33120-33139 Msa1452240:CDS 55.0%
!! GCCTCGGTTCTAAGGAGAGA+TGG - tig0033735:33136-33155 Msa1452240:CDS 55.0%
CCCATCTCTCCTTAGAACCG+AGG + tig0033735:33140-33159 None:intergenic 55.0%
GAATGTTGGGGCTGTGATGC+GGG - tig0033735:33318-33337 Msa1452240:intron 55.0%
AGCCGAAGAGTTCGTGGCAC+AGG - tig0033735:32510-32529 Msa1452240:exon 60.0%
! CGTGGCACAGGCTTGTTCGT+TGG - tig0033735:32522-32541 Msa1452240:exon 60.0%
! GCACAGGCTTGTTCGTTGGC+AGG - tig0033735:32526-32545 Msa1452240:CDS 60.0%
GCCCGGATAACCCATCTCTC+AGG + tig0033735:33655-33674 None:intergenic 60.0%
AGCCGAAGAGTTCGTGGCAC+AGG - tig0033735:32510-32529 Msa1452240:exon 60.0%
! CGTGGCACAGGCTTGTTCGT+TGG - tig0033735:32522-32541 Msa1452240:exon 60.0%
! GCACAGGCTTGTTCGTTGGC+AGG - tig0033735:32526-32545 Msa1452240:CDS 60.0%
GCCCGGATAACCCATCTCTC+AGG + tig0033735:33655-33674 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0033735 gene 32254 34004 32254 ID=Msa1452240;Name=Msa1452240
tig0033735 mRNA 32254 34004 32254 ID=Msa1452240-mRNA-1;Parent=Msa1452240;Name=Msa1452240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=101|1|1|1|1|1|3|269|202
tig0033735 exon 32254 32704 32254 ID=Msa1452240-mRNA-1:exon:18487;Parent=Msa1452240-mRNA-1
tig0033735 exon 33060 33263 33060 ID=Msa1452240-mRNA-1:exon:18486;Parent=Msa1452240-mRNA-1
tig0033735 exon 33681 34004 33681 ID=Msa1452240-mRNA-1:exon:18485;Parent=Msa1452240-mRNA-1
tig0033735 five_prime_UTR 33904 34004 33904 ID=Msa1452240-mRNA-1:five_prime_utr;Parent=Msa1452240-mRNA-1
tig0033735 CDS 33681 33903 33681 ID=Msa1452240-mRNA-1:cds;Parent=Msa1452240-mRNA-1
tig0033735 CDS 33060 33263 33060 ID=Msa1452240-mRNA-1:cds;Parent=Msa1452240-mRNA-1
tig0033735 CDS 32523 32704 32523 ID=Msa1452240-mRNA-1:cds;Parent=Msa1452240-mRNA-1
tig0033735 three_prime_UTR 32254 32522 32254 ID=Msa1452240-mRNA-1:three_prime_utr;Parent=Msa1452240-mRNA-1
Gene Sequence

>Msa1452240

ATGGAATGCCAATATGAACTGGAAATAGATTCAAATGCCATAGACTTGAACTTCGAAGAATGCATTAAAAGGGACGGAAATTCATGGAATATGTGGATGGCTGCATATAACTTAGCGAGAGGAATGAATTTGTTGCAAAAAAGGGATTTAGTCTCAGCCGAAGAGTTCGTGGCACAGGCTTGTTCGTTGGCAGGTTTTGAAAGCTGCCTCTATTTATGTCATGGTGCCATCTGTATGGAGCTTGTCAGGCAGCACAATAGTCCTCACTTCCTATCACGGGCTATCAATAGCCTTACCAAAGTTCATGAGCTTTCGCTGATTCCCTTACCTTTTGCCTCCATATTGTTGGCTCAAGCAGAAGGAAGCCTCGGTTCTAAGGAGAGATGGGACAGAAACCTTCGCCTTGAATGGTACAATTGGTCATCAGAAATGAGGCCTGCAGAGGTTTACTTTCAAATGCATTTGGTTGCACGACAGTTGAAAGTTGGGCCAAGCTCTATCTCTAGGATGGAGTCCTCTCAAAGTCCTGAGAGATGGGTTATCCGGGCAATACACATGAATCCTTCTTGCATGCGATATTGGAGGGTTTTACAGAAGCTAATGGAATAA

Protein sequence

>Msa1452240

MECQYELEIDSNAIDLNFEECIKRDGNSWNMWMAAYNLARGMNLLQKRDLVSAEEFVAQACSLAGFESCLYLCHGAICMELVRQHNSPHFLSRAINSLTKVHELSLIPLPFASILLAQAEGSLGSKERWDRNLRLEWYNWSSEMRPAEVYFQMHLVARQLKVGPSSISRMESSQSPERWVIRAIHMNPSCMRYWRVLQKLME*