Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389760 | RDX66901.1 | 49.650 | 143 | 62 | 4 | 122 | 257 | 43 | 182 | 4.54e-24 | 109 |
| Msa1389760 | RDX66901.1 | 63.707 | 259 | 86 | 4 | 3 | 260 | 54 | 305 | 1.37e-85 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389760 | sp|O03982|HIP39_ARATH | 56.338 | 71 | 30 | 1 | 1 | 70 | 1 | 71 | 8.24e-18 | 81.6 |
| Msa1389760 | sp|O03982|HIP39_ARATH | 53.623 | 69 | 31 | 1 | 133 | 200 | 3 | 71 | 1.14e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389760 | A0A371ELI2 | 49.650 | 143 | 62 | 4 | 122 | 257 | 43 | 182 | 2.17e-24 | 109 |
| Msa1389760 | A0A371ELI2 | 63.707 | 259 | 86 | 4 | 3 | 260 | 54 | 305 | 6.57e-86 | 267 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa1389760 | 0.818539 | 1.859796e-52 | -8.615850e-47 |
| Msa0004480 | Msa1389760 | 0.810202 | 1.295791e-50 | -8.615850e-47 |
| Msa0038770 | Msa1389760 | 0.841429 | 4.779110e-58 | -8.615850e-47 |
| Msa0071480 | Msa1389760 | 0.826957 | 2.040031e-54 | -8.615850e-47 |
| Msa0086560 | Msa1389760 | 0.914601 | 1.583744e-84 | -8.615850e-47 |
| Msa0106530 | Msa1389760 | 0.825418 | 4.737799e-54 | -8.615850e-47 |
| Msa0119440 | Msa1389760 | 0.862449 | 5.028078e-64 | -8.615850e-47 |
| Msa1364080 | Msa1389760 | 0.812480 | 4.150395e-51 | -8.615850e-47 |
| Msa1367530 | Msa1389760 | 0.813528 | 2.445729e-51 | -8.615850e-47 |
| Msa1376450 | Msa1389760 | 0.825442 | 4.677492e-54 | -8.615850e-47 |
| Msa1389760 | Msa1391550 | 0.815770 | 7.795601e-52 | -8.615850e-47 |
| Msa1389760 | Msa1405820 | 0.800849 | 1.188301e-48 | -8.615850e-47 |
| Msa1389760 | Msa1421900 | 0.821553 | 3.798874e-53 | -8.615850e-47 |
| Msa0631320 | Msa1389760 | 0.825159 | 5.457748e-54 | -8.615850e-47 |
| Msa0729350 | Msa1389760 | 0.826962 | 2.034122e-54 | -8.615850e-47 |
| Msa0734940 | Msa1389760 | 0.805425 | 1.343090e-49 | -8.615850e-47 |
| Msa0742150 | Msa1389760 | 0.807072 | 6.041527e-50 | -8.615850e-47 |
| Msa0748660 | Msa1389760 | 0.840184 | 1.012918e-57 | -8.615850e-47 |
| Msa0769720 | Msa1389760 | 0.850140 | 2.057794e-60 | -8.615850e-47 |
| Msa0775560 | Msa1389760 | 0.809354 | 1.971912e-50 | -8.615850e-47 |
| Msa0786070 | Msa1389760 | 0.802288 | 6.023158e-49 | -8.615850e-47 |
| Msa0807670 | Msa1389760 | 0.844694 | 6.451216e-59 | -8.615850e-47 |
| Msa0807680 | Msa1389760 | 0.846114 | 2.662281e-59 | -8.615850e-47 |
| Msa0813260 | Msa1389760 | 0.813702 | 2.239606e-51 | -8.615850e-47 |
| Msa0823440 | Msa1389760 | 0.816633 | 5.001208e-52 | -8.615850e-47 |
| Msa0133100 | Msa1389760 | 0.969627 | 2.114600e-130 | -8.615850e-47 |
| Msa0151220 | Msa1389760 | 0.808827 | 2.557864e-50 | -8.615850e-47 |
| Msa0152560 | Msa1389760 | 0.813337 | 2.694314e-51 | -8.615850e-47 |
| Msa0162690 | Msa1389760 | 0.846343 | 2.305476e-59 | -8.615850e-47 |
| Msa0187310 | Msa1389760 | 0.831419 | 1.687413e-55 | -8.615850e-47 |
| Msa0196880 | Msa1389760 | 0.825983 | 3.480759e-54 | -8.615850e-47 |
| Msa0213430 | Msa1389760 | 0.806361 | 8.538782e-50 | -8.615850e-47 |
| Msa0223140 | Msa1389760 | 0.833583 | 4.907643e-56 | -8.615850e-47 |
| Msa0224130 | Msa1389760 | 0.818481 | 1.916672e-52 | -8.615850e-47 |
| Msa1238690 | Msa1389760 | 0.805475 | 1.310939e-49 | -8.615850e-47 |
| Msa1246700 | Msa1389760 | 0.818145 | 2.283266e-52 | -8.615850e-47 |
| Msa1277780 | Msa1389760 | 0.812249 | 4.661877e-51 | -8.615850e-47 |
| Msa1280170 | Msa1389760 | 0.811625 | 6.375211e-51 | -8.615850e-47 |
| Msa1285200 | Msa1389760 | 0.839417 | 1.604712e-57 | -8.615850e-47 |
| Msa0364790 | Msa1389760 | 0.865013 | 8.034133e-65 | -8.615850e-47 |
| Msa0412260 | Msa1389760 | 0.843966 | 1.012449e-58 | -8.615850e-47 |
| Msa0418400 | Msa1389760 | 0.804127 | 2.508049e-49 | -8.615850e-47 |
| Msa0426560 | Msa1389760 | 0.804398 | 2.202137e-49 | -8.615850e-47 |
| Msa0437070 | Msa1389760 | 0.823588 | 1.277528e-53 | -8.615850e-47 |
| Msa0456770 | Msa1389760 | 0.856767 | 2.574397e-62 | -8.615850e-47 |
| Msa0463490 | Msa1389760 | 0.841227 | 5.400656e-58 | -8.615850e-47 |
| Msa0472710 | Msa1389760 | 0.806939 | 6.448707e-50 | -8.615850e-47 |
| Msa0472770 | Msa1389760 | 0.807284 | 5.450510e-50 | -8.615850e-47 |
| Msa0473140 | Msa1389760 | 0.802573 | 5.261791e-49 | -8.615850e-47 |
| Msa0999160 | Msa1389760 | 0.828957 | 6.734448e-55 | -8.615850e-47 |
| Msa1064510 | Msa1389760 | 0.802985 | 4.325024e-49 | -8.615850e-47 |
| Msa1074540 | Msa1389760 | 0.800222 | 1.594936e-48 | -8.615850e-47 |
| Msa1078330 | Msa1389760 | 0.821205 | 4.570261e-53 | -8.615850e-47 |
| Msa1100930 | Msa1389760 | 0.800386 | 1.476554e-48 | -8.615850e-47 |
| Msa0245540 | Msa1389760 | 0.802758 | 4.818333e-49 | -8.615850e-47 |
| Msa0259440 | Msa1389760 | 0.817309 | 3.524984e-52 | -8.615850e-47 |
| Msa0259580 | Msa1389760 | 0.819471 | 1.141174e-52 | -8.615850e-47 |
| Msa0265270 | Msa1389760 | 0.814863 | 1.240393e-51 | -8.615850e-47 |
| Msa0276430 | Msa1389760 | 0.818667 | 1.739465e-52 | -8.615850e-47 |
| Msa0305620 | Msa1389760 | 0.848085 | 7.671432e-60 | -8.615850e-47 |
| Msa0316470 | Msa1389760 | 0.800980 | 1.117236e-48 | -8.615850e-47 |
| Msa0339720 | Msa1389760 | 0.830000 | 3.756591e-55 | -8.615850e-47 |
| Msa0358110 | Msa1389760 | 0.812005 | 5.271074e-51 | -8.615850e-47 |
| Msa1123720 | Msa1389760 | 0.810052 | 1.395993e-50 | -8.615850e-47 |
| Msa1218160 | Msa1389760 | 0.801955 | 7.053376e-49 | -8.615850e-47 |
| Msa0517610 | Msa1389760 | 0.800888 | 1.166913e-48 | -8.615850e-47 |
| Msa0524440 | Msa1389760 | 0.826635 | 2.434963e-54 | -8.615850e-47 |
| Msa0534870 | Msa1389760 | 0.816309 | 5.910061e-52 | -8.615850e-47 |
| Msa0853440 | Msa1389760 | 0.800410 | 1.460256e-48 | -8.615850e-47 |
| Msa0853810 | Msa1389760 | 0.810395 | 1.177674e-50 | -8.615850e-47 |
| Msa0860250 | Msa1389760 | 0.835966 | 1.233213e-56 | -8.615850e-47 |
| Msa0964960 | Msa1389760 | 0.803705 | 3.068176e-49 | -8.615850e-47 |
| Msa0968050 | Msa1389760 | 0.843932 | 1.033738e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389760 | MtrunA17_Chr1g0202501 | 97.656 | 128 | 3 | 0 | 133 | 260 | 3 | 130 | 8.43e-87 | 254 |
| Msa1389760 | MtrunA17_Chr1g0202501 | 53.731 | 134 | 57 | 2 | 1 | 134 | 1 | 129 | 1.43e-28 | 105 |
| Msa1389760 | MtrunA17_Chr1g0202541 | 93.382 | 136 | 8 | 1 | 1 | 135 | 1 | 136 | 4.88e-71 | 214 |
| Msa1389760 | MtrunA17_Chr1g0202541 | 55.970 | 134 | 51 | 4 | 133 | 259 | 3 | 135 | 5.60e-29 | 107 |
| Msa1389760 | MtrunA17_Chr1g0202561 | 82.143 | 140 | 19 | 4 | 1 | 135 | 1 | 139 | 5.48e-55 | 173 |
| Msa1389760 | MtrunA17_Chr1g0202561 | 51.471 | 136 | 57 | 2 | 133 | 259 | 3 | 138 | 2.37e-26 | 100 |
| Msa1389760 | MtrunA17_Chr1g0202581 | 81.481 | 135 | 22 | 2 | 1 | 135 | 1 | 132 | 1.42e-53 | 169 |
| Msa1389760 | MtrunA17_Chr1g0202581 | 48.485 | 132 | 60 | 4 | 133 | 259 | 3 | 131 | 5.38e-24 | 94.0 |
| Msa1389760 | MtrunA17_Chr1g0204291 | 81.481 | 135 | 22 | 2 | 1 | 135 | 1 | 132 | 6.66e-53 | 168 |
| Msa1389760 | MtrunA17_Chr1g0204291 | 52.632 | 133 | 53 | 4 | 133 | 259 | 3 | 131 | 4.10e-23 | 91.7 |
| Msa1389760 | MtrunA17_Chr6g0469651 | 58.571 | 140 | 37 | 2 | 133 | 260 | 3 | 133 | 1.42e-34 | 121 |
| Msa1389760 | MtrunA17_Chr6g0469651 | 54.676 | 139 | 51 | 3 | 1 | 134 | 1 | 132 | 1.20e-32 | 116 |
| Msa1389760 | MtrunA17_Chr6g0469571 | 56.716 | 134 | 47 | 2 | 1 | 134 | 1 | 123 | 2.57e-34 | 120 |
| Msa1389760 | MtrunA17_Chr6g0469571 | 53.030 | 132 | 48 | 4 | 133 | 260 | 3 | 124 | 1.65e-33 | 118 |
| Msa1389760 | MtrunA17_Chr6g0469551 | 55.970 | 134 | 48 | 2 | 1 | 134 | 1 | 123 | 7.70e-34 | 119 |
| Msa1389760 | MtrunA17_Chr6g0469551 | 52.273 | 132 | 49 | 4 | 133 | 260 | 3 | 124 | 5.32e-33 | 117 |
| Msa1389760 | MtrunA17_Chr6g0469681 | 56.296 | 135 | 49 | 3 | 1 | 134 | 1 | 126 | 1.41e-33 | 118 |
| Msa1389760 | MtrunA17_Chr6g0469681 | 51.562 | 128 | 59 | 1 | 133 | 260 | 3 | 127 | 1.57e-32 | 115 |
| Msa1389760 | MtrunA17_Chr6g0469591 | 55.970 | 134 | 48 | 2 | 1 | 134 | 1 | 123 | 7.03e-33 | 116 |
| Msa1389760 | MtrunA17_Chr6g0469591 | 51.515 | 132 | 50 | 4 | 133 | 260 | 3 | 124 | 8.29e-32 | 114 |
| Msa1389760 | MtrunA17_Chr8g0387471 | 50.000 | 128 | 61 | 2 | 133 | 260 | 3 | 127 | 1.31e-32 | 115 |
| Msa1389760 | MtrunA17_Chr8g0387471 | 45.985 | 137 | 60 | 3 | 1 | 134 | 1 | 126 | 7.36e-30 | 108 |
| Msa1389760 | MtrunA17_Chr6g0469671 | 74.286 | 70 | 18 | 0 | 1 | 70 | 1 | 70 | 5.19e-31 | 111 |
| Msa1389760 | MtrunA17_Chr6g0469671 | 61.765 | 68 | 26 | 0 | 133 | 200 | 3 | 70 | 1.42e-23 | 92.0 |
| Msa1389760 | MtrunA17_Chr7g0233191 | 50.435 | 115 | 42 | 2 | 1 | 115 | 1 | 100 | 1.37e-28 | 105 |
| Msa1389760 | MtrunA17_Chr7g0233191 | 41.228 | 114 | 55 | 2 | 133 | 246 | 3 | 104 | 1.22e-21 | 87.0 |
| Msa1389760 | MtrunA17_Chr7g0233181 | 64.474 | 76 | 27 | 0 | 1 | 76 | 1 | 76 | 2.16e-28 | 104 |
| Msa1389760 | MtrunA17_Chr7g0233181 | 54.054 | 74 | 34 | 0 | 133 | 206 | 3 | 76 | 3.27e-22 | 88.2 |
| Msa1389760 | MtrunA17_Chr7g0233251 | 49.565 | 115 | 43 | 2 | 1 | 115 | 1 | 100 | 2.86e-28 | 104 |
| Msa1389760 | MtrunA17_Chr7g0233251 | 43.443 | 122 | 53 | 3 | 133 | 250 | 3 | 112 | 3.91e-24 | 93.6 |
| Msa1389760 | MtrunA17_Chr7g0233201 | 48.696 | 115 | 44 | 2 | 1 | 115 | 1 | 100 | 7.08e-28 | 103 |
| Msa1389760 | MtrunA17_Chr7g0233201 | 40.351 | 114 | 56 | 2 | 133 | 246 | 3 | 104 | 2.55e-21 | 86.3 |
| Msa1389760 | MtrunA17_Chr7g0233231 | 43.902 | 123 | 56 | 1 | 1 | 123 | 1 | 110 | 4.16e-27 | 101 |
| Msa1389760 | MtrunA17_Chr7g0233231 | 42.105 | 114 | 54 | 2 | 133 | 246 | 3 | 104 | 9.73e-24 | 92.4 |
| Msa1389760 | MtrunA17_Chr6g0469541 | 61.842 | 76 | 29 | 0 | 1 | 76 | 1 | 76 | 5.09e-27 | 100 |
| Msa1389760 | MtrunA17_Chr6g0469541 | 45.378 | 119 | 49 | 4 | 133 | 247 | 3 | 109 | 4.78e-24 | 93.2 |
| Msa1389760 | MtrunA17_Chr7g0233211 | 63.158 | 76 | 28 | 0 | 1 | 76 | 1 | 76 | 1.05e-26 | 100 |
| Msa1389760 | MtrunA17_Chr7g0233211 | 42.105 | 114 | 54 | 2 | 133 | 246 | 3 | 104 | 7.87e-24 | 92.8 |
| Msa1389760 | MtrunA17_Chr7g0248671 | 57.353 | 68 | 29 | 0 | 1 | 68 | 1 | 68 | 3.63e-21 | 87.4 |
| Msa1389760 | MtrunA17_Chr7g0248671 | 36.994 | 173 | 61 | 4 | 133 | 260 | 3 | 172 | 1.30e-14 | 70.1 |
| Msa1389760 | MtrunA17_Chr8g0348361 | 60.294 | 68 | 27 | 0 | 1 | 68 | 1 | 68 | 1.05e-13 | 67.0 |
| Msa1389760 | MtrunA17_Chr8g0348361 | 41.912 | 136 | 54 | 3 | 147 | 260 | 17 | 149 | 6.18e-12 | 62.0 |
| Msa1389760 | MtrunA17_Chr3g0120541 | 44.444 | 81 | 40 | 4 | 2 | 77 | 4 | 84 | 2.21e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389760 | AT1G01490.1 | 56.338 | 71 | 30 | 1 | 1 | 70 | 1 | 71 | 8.38e-19 | 81.6 |
| Msa1389760 | AT1G01490.1 | 53.623 | 69 | 31 | 1 | 133 | 200 | 3 | 71 | 1.16e-15 | 73.2 |
| Msa1389760 | AT1G01490.2 | 56.338 | 71 | 30 | 1 | 1 | 70 | 1 | 71 | 8.38e-19 | 81.6 |
| Msa1389760 | AT1G01490.2 | 53.623 | 69 | 31 | 1 | 133 | 200 | 3 | 71 | 1.16e-15 | 73.2 |
| Msa1389760 | AT5G52760.1 | 52.500 | 80 | 36 | 2 | 135 | 213 | 7 | 85 | 1.64e-17 | 77.0 |
| Msa1389760 | AT5G52760.1 | 36.957 | 138 | 60 | 7 | 2 | 135 | 4 | 118 | 2.27e-14 | 68.6 |
| Msa1389760 | AT1G01490.4 | 55.072 | 69 | 30 | 1 | 3 | 70 | 30 | 98 | 3.06e-17 | 78.2 |
| Msa1389760 | AT1G01490.4 | 53.623 | 69 | 31 | 1 | 133 | 200 | 30 | 98 | 2.78e-15 | 72.8 |
| Msa1389760 | AT5G52740.1 | 54.286 | 70 | 30 | 1 | 1 | 70 | 1 | 68 | 1.66e-16 | 73.9 |
| Msa1389760 | AT5G52740.1 | 49.254 | 67 | 32 | 1 | 134 | 200 | 4 | 68 | 2.89e-14 | 67.8 |
| Msa1389760 | AT5G52750.1 | 46.154 | 65 | 35 | 0 | 3 | 67 | 5 | 69 | 2.45e-12 | 63.2 |
| Msa1389760 | AT5G52750.1 | 44.615 | 65 | 36 | 0 | 133 | 197 | 5 | 69 | 3.12e-12 | 63.2 |
Find 57 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCAGTCTCTGGCCTTTC+AGG | 0.147290 | tig0021300:+47790 | Msa1389760:CDS |
| AAGGCAGTCTCTAATATTTC+AGG | 0.223869 | tig0021300:+51958 | Msa1389760:CDS |
| CTCCTGTTAAGGTCAATTTC+TGG | 0.257650 | tig0021300:-52129 | None:intergenic |
| AGGATCCTCTTCAACGCTTA+TGG | 0.283035 | tig0021300:-48397 | None:intergenic |
| CTCTTCTTTCTTAGGCTCCT+TGG | 0.291492 | tig0021300:-52224 | None:intergenic |
| GAAGCCAGCAGAGGAGAAAA+AGG | 0.295344 | tig0021300:+52252 | Msa1389760:CDS |
| ATTAATCCTTTCATGCTCTA+TGG | 0.308553 | tig0021300:+48318 | Msa1389760:CDS |
| TGGATCAATGTCTCCTATTA+AGG | 0.318014 | tig0021300:-48157 | None:intergenic |
| AGGGGTTGAGTCAGTTTCTT+TGG | 0.321514 | tig0021300:+52096 | Msa1389760:intron |
| GACAAGAAAATGACCTTAAT+AGG | 0.340701 | tig0021300:+48144 | Msa1389760:CDS |
| GACCAGAAATTGACCTTAAC+AGG | 0.348770 | tig0021300:+52127 | Msa1389760:CDS |
| TACTAACCTTCATATTGTTA+TGG | 0.356206 | tig0021300:-47521 | None:intergenic |
| ATTCATCTGATGATTATAAT+AGG | 0.369814 | tig0021300:-48352 | None:intergenic |
| GGTCCAACAGATAGTATCTT+AGG | 0.370404 | tig0021300:-52199 | None:intergenic |
| TTGATGAAAATTGTAATAAG+AGG | 0.391387 | tig0021300:-47470 | None:intergenic |
| GTCAGTTTCTTTGGATATGA+AGG | 0.403102 | tig0021300:+52105 | Msa1389760:CDS |
| ATGAAAGGATTAATTATCAT+TGG | 0.416717 | tig0021300:-48309 | None:intergenic |
| TAGATGATGACACAGCCATT+AGG | 0.441354 | tig0021300:-48417 | None:intergenic |
| TGTGGTTGTGTCATCATCAT+AGG | 0.448817 | tig0021300:-52334 | None:intergenic |
| TCTTTCTTAGGCTCCTTGGC+TGG | 0.455295 | tig0021300:-52220 | None:intergenic |
| ACAGAAAGTTGTGTTGAAGT+TGG | 0.461760 | tig0021300:+47732 | Msa1389760:intron |
| AACGTCTATGTCTCCTGTTA+AGG | 0.469452 | tig0021300:-52140 | None:intergenic |
| TTCAGTTGGACCAGCTAAAG+AGG | 0.475094 | tig0021300:+48227 | Msa1389760:CDS |
| AAAGCTATGAAAGCAGTCTC+TGG | 0.485853 | tig0021300:+47781 | Msa1389760:CDS |
| TATAGTCCAAGTCTAATGTA+TGG | 0.486991 | tig0021300:-47344 | None:intergenic |
| CATCATCATAGGATAATGAT+AGG | 0.491712 | tig0021300:-52323 | None:intergenic |
| AGCTTAGCCACTACACGTAC+TGG | 0.496210 | tig0021300:-48177 | None:intergenic |
| CATGCTGAAATACTTTCAGT+TGG | 0.503143 | tig0021300:+48213 | Msa1389760:CDS |
| TAAGAGGGAAAGAAAAGTTA+CGG | 0.504708 | tig0021300:-47454 | None:intergenic |
| AATAAGAATTCAGCAGCTCC+TGG | 0.507008 | tig0021300:+52280 | Msa1389760:CDS |
| TGCATGTAGTGGGAAAGTTA+AGG | 0.513637 | tig0021300:+52164 | Msa1389760:CDS |
| ATTGAAGTGGTAATTTGAAG+AGG | 0.514412 | tig0021300:-47429 | None:intergenic |
| GCACGGTGGTATGAATTGTA+TGG | 0.520307 | tig0021300:-48375 | None:intergenic |
| TGATGATTATAATAGGTAGT+AGG | 0.521368 | tig0021300:-48345 | None:intergenic |
| ACTCTTCCATACATTAGACT+TGG | 0.537578 | tig0021300:+47338 | Msa1389760:five_prime_UTR |
| CCGTGCCATAAGCGTTGAAG+AGG | 0.546888 | tig0021300:+48392 | Msa1389760:CDS |
| GGTGTACCATAGAGCATGAA+AGG | 0.548293 | tig0021300:-48324 | None:intergenic |
| CATAGACGTTGTGCATGTAG+TGG | 0.552040 | tig0021300:+52153 | Msa1389760:CDS |
| TAGCTTCCATAACAATATGA+AGG | 0.555459 | tig0021300:+47515 | Msa1389760:exon |
| TACGTGTAGTGGCTAAGCTA+AGG | 0.568064 | tig0021300:+48181 | Msa1389760:CDS |
| CATCCTAAGATACTATCTGT+TGG | 0.572285 | tig0021300:+52196 | Msa1389760:CDS |
| TCACAAACCTTCACAAAACC+AGG | 0.572656 | tig0021300:-52298 | None:intergenic |
| TGATGAAAATTGTAATAAGA+GGG | 0.575554 | tig0021300:-47469 | None:intergenic |
| TAGTTAATTCAATACCTGAA+AGG | 0.578105 | tig0021300:-47804 | None:intergenic |
| ACAGAAAATAGTGCTGCAAG+TGG | 0.586119 | tig0021300:+51900 | Msa1389760:intron |
| AGCGTTGAAGAGGATCCTAA+TGG | 0.594188 | tig0021300:+48402 | Msa1389760:CDS |
| ACTATCTGTTGGACCAGCCA+AGG | 0.595856 | tig0021300:+52207 | Msa1389760:CDS |
| CATTGATCCAGTACGTGTAG+TGG | 0.602340 | tig0021300:+48170 | Msa1389760:CDS |
| ATAGACGTTGTGCATGTAGT+GGG | 0.603550 | tig0021300:+52154 | Msa1389760:CDS |
| TATGGAAGAGTTGATGATAG+AGG | 0.603821 | tig0021300:-47326 | None:intergenic |
| TAACAGATGACACATGCACT+AGG | 0.606912 | tig0021300:-52385 | None:intergenic |
| CCTCTTCAACGCTTATGGCA+CGG | 0.607325 | tig0021300:-48392 | None:intergenic |
| AAAAGTTACGGAGATTGAAG+TGG | 0.624940 | tig0021300:-47442 | None:intergenic |
| ACATTACTATTACACTAGTG+TGG | 0.640232 | tig0021300:+52354 | Msa1389760:CDS |
| ACACTAGTGTAATAGTAATG+TGG | 0.647440 | tig0021300:-52352 | None:intergenic |
| TTATGGAAGCTACTGAGCTG+AGG | 0.657868 | tig0021300:-47504 | None:intergenic |
| CTTCAACGCTTATGGCACGG+TGG | 0.735189 | tig0021300:-48389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTATTTTTTATTA+TGG | + | tig0021300:51607-51626 | Msa1389760:intron | 0.0% |
| !!! | ATCTAAATTTTTTTATATCA+AGG | + | tig0021300:48435-48454 | Msa1389760:intron | 10.0% |
| !! | AATTAATATAAGGAATAATA+AGG | - | tig0021300:49161-49180 | None:intergenic | 10.0% |
| !! | AACATGTTTAAATAATTAAA+AGG | + | tig0021300:49265-49284 | Msa1389760:intron | 10.0% |
| !!! | TTCATAAAAGTTTATTTTTT+TGG | + | tig0021300:49306-49325 | Msa1389760:intron | 10.0% |
| !! | CATACAAATAATAAATTTAA+TGG | - | tig0021300:50649-50668 | None:intergenic | 10.0% |
| !!! | ATACATTATCATATATTTTT+AGG | + | tig0021300:51062-51081 | Msa1389760:intron | 10.0% |
| !! | ACTTGAATTATTAAATAAAA+GGG | - | tig0021300:51342-51361 | None:intergenic | 10.0% |
| !! | AACTTGAATTATTAAATAAA+AGG | - | tig0021300:51343-51362 | None:intergenic | 10.0% |
| !! | TTTAGATTAATAAAGTGTAT+TGG | + | tig0021300:47952-47971 | Msa1389760:intron | 15.0% |
| !!! | TTCTTTTTATCATCTTTTTT+AGG | - | tig0021300:48267-48286 | None:intergenic | 15.0% |
| !! | TAAAAAAGATGATAAAAAGA+AGG | + | tig0021300:48266-48285 | Msa1389760:CDS | 15.0% |
| !!! | GTATTTTCTTTCTTTATTTT+TGG | + | tig0021300:48492-48511 | Msa1389760:intron | 15.0% |
| !!! | AAACTTTTATGAAAGTTATT+TGG | - | tig0021300:49299-49318 | None:intergenic | 15.0% |
| !!! | ACTATTTCTTAATTTTGTAA+TGG | + | tig0021300:49629-49648 | Msa1389760:intron | 15.0% |
| !! | TTTATGGTTTCTTAAAAATA+AGG | + | tig0021300:50108-50127 | Msa1389760:intron | 15.0% |
| !! | CAAATAATAAATTTAATGGT+TGG | - | tig0021300:50645-50664 | None:intergenic | 15.0% |
| !! | TTTATTATTTGTATGTCAAT+TGG | + | tig0021300:50654-50673 | Msa1389760:intron | 15.0% |
| !! | TTATTATTTGTATGTCAATT+GGG | + | tig0021300:50655-50674 | Msa1389760:intron | 15.0% |
| !!! | TTAAAGTATCTAAAGATTAT+TGG | - | tig0021300:50889-50908 | None:intergenic | 15.0% |
| !!! | ACAATTTGAATTCATTTTAT+TGG | - | tig0021300:51634-51653 | None:intergenic | 15.0% |
| !! | AAAGAGAATAAATTTAATCA+TGG | + | tig0021300:52066-52085 | Msa1389760:intron | 15.0% |
| !!! | TTAACTTTTAGATTATTTGA+AGG | + | tig0021300:52405-52424 | Msa1389760:exon | 15.0% |
| !!! | TAACTTTTAGATTATTTGAA+GGG | + | tig0021300:52406-52425 | Msa1389760:exon | 15.0% |
| !! | TGATGAAAATTGTAATAAGA+GGG | - | tig0021300:47472-47491 | None:intergenic | 20.0% |
| !! | TTGATGAAAATTGTAATAAG+AGG | - | tig0021300:47473-47492 | None:intergenic | 20.0% |
| !! | TAGAAATTGTTCAAAAGAAA+AGG | - | tig0021300:47620-47639 | None:intergenic | 20.0% |
| !! | TAAAATATCGAACTTGAAAT+CGG | - | tig0021300:47936-47955 | None:intergenic | 20.0% |
| !!! | AAGTATTGATTCTATAGATT+TGG | - | tig0021300:48040-48059 | None:intergenic | 20.0% |
| !! | ATGAAAGGATTAATTATCAT+TGG | - | tig0021300:48312-48331 | None:intergenic | 20.0% |
| !! | ATTCATCTGATGATTATAAT+AGG | - | tig0021300:48355-48374 | None:intergenic | 20.0% |
| !! | ACATTATGTATTAGATTCTA+AGG | - | tig0021300:49334-49353 | None:intergenic | 20.0% |
| !! | CAAAATTAAGAAATAGTTCA+TGG | - | tig0021300:49626-49645 | None:intergenic | 20.0% |
| !! | GTGTCATATATAGTTTATTA+TGG | + | tig0021300:49755-49774 | Msa1389760:intron | 20.0% |
| !!! | AATTGCATTTTGATTTTACT+GGG | - | tig0021300:50199-50218 | None:intergenic | 20.0% |
| !! | AATAAAATTAAGTGAAAGAG+AGG | + | tig0021300:50287-50306 | Msa1389760:intron | 20.0% |
| !!! | GGGTATTATAATTTTTTTTG+AGG | + | tig0021300:50424-50443 | Msa1389760:intron | 20.0% |
| !! | AAATGAATGAAGACAATATA+TGG | - | tig0021300:50708-50727 | None:intergenic | 20.0% |
| !!! | TTCTTCTTATTTAAGAATCA+GGG | - | tig0021300:50777-50796 | None:intergenic | 20.0% |
| !!! | TTTCTTCTTATTTAAGAATC+AGG | - | tig0021300:50778-50797 | None:intergenic | 20.0% |
| !! | TATCTGATATATATCTAACA+CGG | - | tig0021300:50866-50885 | None:intergenic | 20.0% |
| !!! | TAGGATATTTCTTTTTTGAA+AGG | + | tig0021300:51081-51100 | Msa1389760:intron | 20.0% |
| !!! | TATTTTCCTTTTAAATACCT+TGG | + | tig0021300:51480-51499 | Msa1389760:intron | 20.0% |
| !!! | ATGAAATTAAATAGAAGCAT+AGG | - | tig0021300:51816-51835 | None:intergenic | 20.0% |
| !!! | GCTATTTTATTCATAAAATC+AGG | + | tig0021300:52029-52048 | Msa1389760:intron | 20.0% |
| !!! | ATTTTATTCATAAAATCAGG+AGG | + | tig0021300:52032-52051 | Msa1389760:intron | 20.0% |
| !!! | AACTTTTAGATTATTTGAAG+GGG | + | tig0021300:52407-52426 | Msa1389760:exon | 20.0% |
| ! | TACTAACCTTCATATTGTTA+TGG | - | tig0021300:47524-47543 | None:intergenic | 25.0% |
| ! | TAAAAGAGTGGTATTAATCA+AGG | - | tig0021300:47559-47578 | None:intergenic | 25.0% |
| ! | TGATAAAGAAGATAAAAGAG+TGG | - | tig0021300:47571-47590 | None:intergenic | 25.0% |
| ! | TATCAATGCTAAAGCATAAT+TGG | + | tig0021300:47586-47605 | Msa1389760:intron | 25.0% |
| !! | TTGAATTTGAAGTAGTTCTT+TGG | + | tig0021300:47642-47661 | Msa1389760:intron | 25.0% |
| ! | TAGTTAATTCAATACCTGAA+AGG | - | tig0021300:47807-47826 | None:intergenic | 25.0% |
| ! | AAAATATCGAACTTGAAATC+GGG | - | tig0021300:47935-47954 | None:intergenic | 25.0% |
| ! | TTGGAAATTGAAAATCTGAT+TGG | + | tig0021300:47971-47990 | Msa1389760:intron | 25.0% |
| ! | TGATGATTATAATAGGTAGT+AGG | - | tig0021300:48348-48367 | None:intergenic | 25.0% |
| ! | GTAAGTGTAGAATATCATAT+TGG | - | tig0021300:48603-48622 | None:intergenic | 25.0% |
| ! | GAACACAATTGTTAATACTT+AGG | - | tig0021300:48693-48712 | None:intergenic | 25.0% |
| ! | ATATTAAGAGTAAACTTTGC+TGG | + | tig0021300:48798-48817 | Msa1389760:intron | 25.0% |
| ! | GAAAGTTAATTCACTTTCTA+TGG | + | tig0021300:48823-48842 | Msa1389760:intron | 25.0% |
| ! | GAAGATTACATTGCATAATT+CGG | - | tig0021300:48890-48909 | None:intergenic | 25.0% |
| !! | GAAATGTCATTTGATATTTG+TGG | + | tig0021300:48988-49007 | Msa1389760:intron | 25.0% |
| ! | TTCCTTATATTAATTCGTCA+TGG | + | tig0021300:49166-49185 | Msa1389760:intron | 25.0% |
| ! | TACCATGACGAATTAATATA+AGG | - | tig0021300:49171-49190 | None:intergenic | 25.0% |
| ! | TTAATCACATGATCTAAGAA+GGG | - | tig0021300:49365-49384 | None:intergenic | 25.0% |
| ! | ATTAATCACATGATCTAAGA+AGG | - | tig0021300:49366-49385 | None:intergenic | 25.0% |
| !! | TTTTTCATGAAGTCTTTGAA+CGG | - | tig0021300:49537-49556 | None:intergenic | 25.0% |
| ! | AAAGACTTCATGAAAAAACT+CGG | + | tig0021300:49540-49559 | Msa1389760:intron | 25.0% |
| ! | CTACTCATAATTTATATGAG+TGG | + | tig0021300:49689-49708 | Msa1389760:intron | 25.0% |
| ! | AACTTCTACTTAACATAGTA+TGG | + | tig0021300:50000-50019 | Msa1389760:intron | 25.0% |
| ! | TAAAATTAAGCCAACCTATA+GGG | - | tig0021300:50092-50111 | None:intergenic | 25.0% |
| ! | ATAAAATTAAGCCAACCTAT+AGG | - | tig0021300:50093-50112 | None:intergenic | 25.0% |
| !!! | TATAGGTTGGCTTAATTTTA+TGG | + | tig0021300:50092-50111 | Msa1389760:intron | 25.0% |
| !!! | CTCGGTTCAATTTTTAAAAT+AGG | + | tig0021300:50172-50191 | Msa1389760:intron | 25.0% |
| !!! | ATTGCATTTTGATTTTACTG+GGG | - | tig0021300:50198-50217 | None:intergenic | 25.0% |
| !!! | GAATTGCATTTTGATTTTAC+TGG | - | tig0021300:50200-50219 | None:intergenic | 25.0% |
| ! | ATTGTTGTGATTCTTTCAAT+CGG | + | tig0021300:50398-50417 | Msa1389760:intron | 25.0% |
| !! | AAGACAATATATGGTTTTCA+GGG | - | tig0021300:50699-50718 | None:intergenic | 25.0% |
| !!! | TACTTTAAGATTTATGTCCT+AGG | + | tig0021300:50901-50920 | Msa1389760:intron | 25.0% |
| ! | TAACATTCATTGATAAGAAG+GGG | - | tig0021300:51568-51587 | None:intergenic | 25.0% |
| ! | CTAACATTCATTGATAAGAA+GGG | - | tig0021300:51569-51588 | None:intergenic | 25.0% |
| ! | TCTAACATTCATTGATAAGA+AGG | - | tig0021300:51570-51589 | None:intergenic | 25.0% |
| ! | AATGTCAATTACTTGTACTA+GGG | - | tig0021300:51734-51753 | None:intergenic | 25.0% |
| !!! | AACAAAGAAAAAAGCATTGA+AGG | + | tig0021300:51939-51958 | Msa1389760:CDS | 25.0% |
| !! | AATTTAATCATGGTTTTTGC+AGG | + | tig0021300:52076-52095 | Msa1389760:intron | 25.0% |
| !! | ATTTAATCATGGTTTTTGCA+GGG | + | tig0021300:52077-52096 | Msa1389760:intron | 25.0% |
| !! | TTCTTTTTCTCTTCTTTCTT+AGG | - | tig0021300:52235-52254 | None:intergenic | 25.0% |
| TATAGTCCAAGTCTAATGTA+TGG | - | tig0021300:47347-47366 | None:intergenic | 30.0% | |
| ATTGAAGTGGTAATTTGAAG+AGG | - | tig0021300:47432-47451 | None:intergenic | 30.0% | |
| TAAGAGGGAAAGAAAAGTTA+CGG | - | tig0021300:47457-47476 | None:intergenic | 30.0% | |
| TAGCTTCCATAACAATATGA+AGG | + | tig0021300:47515-47534 | Msa1389760:exon | 30.0% | |
| TGTATTTGCAATATTGTTGC+AGG | + | tig0021300:48093-48112 | Msa1389760:intron | 30.0% | |
| GTATTTGCAATATTGTTGCA+GGG | + | tig0021300:48094-48113 | Msa1389760:intron | 30.0% | |
| TATTTGCAATATTGTTGCAG+GGG | + | tig0021300:48095-48114 | Msa1389760:intron | 30.0% | |
| GACAAGAAAATGACCTTAAT+AGG | + | tig0021300:48144-48163 | Msa1389760:CDS | 30.0% | |
| ATTAATCCTTTCATGCTCTA+TGG | + | tig0021300:48318-48337 | Msa1389760:CDS | 30.0% | |
| TACTTCAGAAAATTGAGTGA+TGG | + | tig0021300:48659-48678 | Msa1389760:intron | 30.0% | |
| TAGAGAATCCATTAATACCA+GGG | - | tig0021300:48779-48798 | None:intergenic | 30.0% | |
| ATAGAGAATCCATTAATACC+AGG | - | tig0021300:48780-48799 | None:intergenic | 30.0% | |
| CCATCATCACAAAAAGATTT+GGG | - | tig0021300:48920-48939 | None:intergenic | 30.0% | |
| ! | CCAAATCTTTTTGTGATGAT+GGG | + | tig0021300:48918-48937 | Msa1389760:intron | 30.0% |
| !! | CAAATCTTTTTGTGATGATG+GGG | + | tig0021300:48919-48938 | Msa1389760:intron | 30.0% |
| GGATACTATTAGTAAACCTA+AGG | + | tig0021300:49009-49028 | Msa1389760:intron | 30.0% | |
| TACTATTAGTAAACCTAAGG+AGG | + | tig0021300:49012-49031 | Msa1389760:intron | 30.0% | |
| TGACAATAATAGAAAGAGAC+CGG | - | tig0021300:49474-49493 | None:intergenic | 30.0% | |
| ! | TACGCTTTATTGGAAATACA+CGG | - | tig0021300:49506-49525 | None:intergenic | 30.0% |
| ! | TGACTATGTTTTCCATTAGA+CGG | - | tig0021300:49592-49611 | None:intergenic | 30.0% |
| GAGAATAGAGAATGAAATTG+AGG | + | tig0021300:49651-49670 | Msa1389760:intron | 30.0% | |
| AATAGAGAATGAAATTGAGG+TGG | + | tig0021300:49654-49673 | Msa1389760:intron | 30.0% | |
| CTCATAATTTATATGAGTGG+AGG | + | tig0021300:49692-49711 | Msa1389760:intron | 30.0% | |
| ATCGATCAAGTTAAGAGATA+AGG | + | tig0021300:49962-49981 | Msa1389760:intron | 30.0% | |
| CAAGTTAAGAGATAAGGATA+TGG | + | tig0021300:49968-49987 | Msa1389760:intron | 30.0% | |
| CTATGTTAAGTAGAAGTTCA+GGG | - | tig0021300:49998-50017 | None:intergenic | 30.0% | |
| ACTATGTTAAGTAGAAGTTC+AGG | - | tig0021300:49999-50018 | None:intergenic | 30.0% | |
| TTGTGAGCGATTTCAAAAAT+TGG | + | tig0021300:50035-50054 | Msa1389760:intron | 30.0% | |
| TAAAAATAAGGTTGCTGAAG+TGG | + | tig0021300:50120-50139 | Msa1389760:intron | 30.0% | |
| TTGTTGTGATTCTTTCAATC+GGG | + | tig0021300:50399-50418 | Msa1389760:intron | 30.0% | |
| ! | GAAGACAATATATGGTTTTC+AGG | - | tig0021300:50700-50719 | None:intergenic | 30.0% |
| GTATCAATCAGATACCTATT+TGG | + | tig0021300:50925-50944 | Msa1389760:intron | 30.0% | |
| AATCAGATACCTATTTGGAT+TGG | + | tig0021300:50930-50949 | Msa1389760:intron | 30.0% | |
| TCTAAAAGAATTGAGTATGC+AGG | - | tig0021300:51121-51140 | None:intergenic | 30.0% | |
| TTAGATACGTATCACATTGT+AGG | + | tig0021300:51136-51155 | Msa1389760:intron | 30.0% | |
| AAGAAGTCAACTTAAGTCTT+GGG | - | tig0021300:51425-51444 | None:intergenic | 30.0% | |
| ATGTCAATTACTTGTACTAG+GGG | - | tig0021300:51733-51752 | None:intergenic | 30.0% | |
| GAATGTCAATTACTTGTACT+AGG | - | tig0021300:51735-51754 | None:intergenic | 30.0% | |
| CACAAGATTGTTAGGAATTT+AGG | - | tig0021300:51868-51887 | None:intergenic | 30.0% | |
| GAACAAATCACAAGATTGTT+AGG | - | tig0021300:51876-51895 | None:intergenic | 30.0% | |
| ! | TTTAATCATGGTTTTTGCAG+GGG | + | tig0021300:52078-52097 | Msa1389760:intron | 30.0% |
| CATCATCATAGGATAATGAT+AGG | - | tig0021300:52326-52345 | None:intergenic | 30.0% | |
| ACACTAGTGTAATAGTAATG+TGG | - | tig0021300:52355-52374 | None:intergenic | 30.0% | |
| ACATTACTATTACACTAGTG+TGG | + | tig0021300:52354-52373 | Msa1389760:CDS | 30.0% | |
| ACTCTTCCATACATTAGACT+TGG | + | tig0021300:47338-47357 | Msa1389760:five_prime_UTR | 35.0% | |
| AAAAGTTACGGAGATTGAAG+TGG | - | tig0021300:47445-47464 | None:intergenic | 35.0% | |
| ACAGAAAGTTGTGTTGAAGT+TGG | + | tig0021300:47732-47751 | Msa1389760:intron | 35.0% | |
| TAGATGTGGATGATTGTGTA+TGG | + | tig0021300:48000-48019 | Msa1389760:intron | 35.0% | |
| TGGATCAATGTCTCCTATTA+AGG | - | tig0021300:48160-48179 | None:intergenic | 35.0% | |
| CATGCTGAAATACTTTCAGT+TGG | + | tig0021300:48213-48232 | Msa1389760:CDS | 35.0% | |
| ! | TCTTTCTTTTCCTCTTTAGC+TGG | - | tig0021300:48240-48259 | None:intergenic | 35.0% |
| TTCTTTCTGATGTACAGTGT+TGG | + | tig0021300:48529-48548 | Msa1389760:intron | 35.0% | |
| !! | ACAGTGTTGGTTATAATACG+AGG | + | tig0021300:48542-48561 | Msa1389760:intron | 35.0% |
| TCATAATACTCCACACAACA+TGG | - | tig0021300:48737-48756 | None:intergenic | 35.0% | |
| TAATACCAGGGATCAAATCT+TGG | - | tig0021300:48767-48786 | None:intergenic | 35.0% | |
| GATTTGATCCCTGGTATTAA+TGG | + | tig0021300:48768-48787 | Msa1389760:intron | 35.0% | |
| TTAAGAGTAAACTTTGCTGG+TGG | + | tig0021300:48801-48820 | Msa1389760:intron | 35.0% | |
| GTTAATTCACTTTCTATGGC+CGG | + | tig0021300:48827-48846 | Msa1389760:intron | 35.0% | |
| AACTTTGAGCTAGAGTGATT+CGG | - | tig0021300:48853-48872 | None:intergenic | 35.0% | |
| ! | CCCAAATCTTTTTGTGATGA+TGG | + | tig0021300:48917-48936 | Msa1389760:intron | 35.0% |
| CCCATCATCACAAAAAGATT+TGG | - | tig0021300:48921-48940 | None:intergenic | 35.0% | |
| !! | TGAACTCTACTTCTAAAGCA+AGG | + | tig0021300:48966-48985 | Msa1389760:intron | 35.0% |
| ATTAGTAAACCTAAGGAGGA+TGG | + | tig0021300:49016-49035 | Msa1389760:intron | 35.0% | |
| CTTGGATTTCGTAATATGAG+AGG | + | tig0021300:49043-49062 | Msa1389760:intron | 35.0% | |
| !! | AGAGGCGTTAATATCATCAA+TGG | + | tig0021300:49061-49080 | Msa1389760:intron | 35.0% |
| TAGCGAAAATATTACGATGC+CGG | + | tig0021300:49452-49471 | Msa1389760:intron | 35.0% | |
| CTTTATTGGAAATACACGGT+TGG | - | tig0021300:49502-49521 | None:intergenic | 35.0% | |
| GTGTATTTCCAATAAAGCGT+AGG | + | tig0021300:49505-49524 | Msa1389760:intron | 35.0% | |
| CGATAGTACGTAATAACCTT+TGG | + | tig0021300:49715-49734 | Msa1389760:intron | 35.0% | |
| CGATTTCAAAAATTGGTCCA+AGG | + | tig0021300:50042-50061 | Msa1389760:intron | 35.0% | |
| ATGTTACATGTGGTTTACCT+TGG | - | tig0021300:50062-50081 | None:intergenic | 35.0% | |
| !!! | TTACCTAACAGTGTCGTTTT+TGG | + | tig0021300:50316-50335 | Msa1389760:intron | 35.0% |
| ATTCCAAAAACGACACTGTT+AGG | - | tig0021300:50322-50341 | None:intergenic | 35.0% | |
| TGTTGTGATTCTTTCAATCG+GGG | + | tig0021300:50400-50419 | Msa1389760:intron | 35.0% | |
| !! | AGAGTCCAATAAGTTGATCT+TGG | + | tig0021300:50514-50533 | Msa1389760:intron | 35.0% |
| CTCTTCCAAGATCAACTTAT+TGG | - | tig0021300:50522-50541 | None:intergenic | 35.0% | |
| TGTATGTCAATTGGGTCATT+TGG | + | tig0021300:50663-50682 | Msa1389760:intron | 35.0% | |
| ATTAATTTCTCGAGCTTTGC+AGG | - | tig0021300:51262-51281 | None:intergenic | 35.0% | |
| AAATTCGTATCGTGATTGCA+AGG | - | tig0021300:51401-51420 | None:intergenic | 35.0% | |
| AGAAGTCAACTTAAGTCTTG+GGG | - | tig0021300:51424-51443 | None:intergenic | 35.0% | |
| GAAGAAGTCAACTTAAGTCT+TGG | - | tig0021300:51426-51445 | None:intergenic | 35.0% | |
| ! | TCAGGTCCAAGGTATTTAAA+AGG | - | tig0021300:51489-51508 | None:intergenic | 35.0% |
| TGATTGTGATGACTTATGCA+TGG | - | tig0021300:51691-51710 | None:intergenic | 35.0% | |
| AAGGCAGTCTCTAATATTTC+AGG | + | tig0021300:51958-51977 | Msa1389760:CDS | 35.0% | |
| GTCAGTTTCTTTGGATATGA+AGG | + | tig0021300:52105-52124 | Msa1389760:CDS | 35.0% | |
| CATCCTAAGATACTATCTGT+TGG | + | tig0021300:52196-52215 | Msa1389760:CDS | 35.0% | |
| AAAGCTATGAAAGCAGTCTC+TGG | + | tig0021300:47781-47800 | Msa1389760:CDS | 40.0% | |
| CTGATTGGACAGTTTAGATG+TGG | + | tig0021300:47986-48005 | Msa1389760:intron | 40.0% | |
| TAGATGATGACACAGCCATT+AGG | - | tig0021300:48420-48439 | None:intergenic | 40.0% | |
| TGTGTTCTGTCCAGAAACAA+AGG | + | tig0021300:48706-48725 | Msa1389760:intron | 40.0% | |
| CATCAATGGCATGATGAAGT+TGG | + | tig0021300:49075-49094 | Msa1389760:intron | 40.0% | |
| TCTTCACATTGATGTGGATG+GGG | - | tig0021300:49396-49415 | None:intergenic | 40.0% | |
| GTCTTCACATTGATGTGGAT+GGG | - | tig0021300:49397-49416 | None:intergenic | 40.0% | |
| TGTCTTCACATTGATGTGGA+TGG | - | tig0021300:49398-49417 | None:intergenic | 40.0% | |
| AGTGTGTCTTCACATTGATG+TGG | - | tig0021300:49402-49421 | None:intergenic | 40.0% | |
| TTGGAAATACACGGTTGGAT+GGG | - | tig0021300:49497-49516 | None:intergenic | 40.0% | |
| ATTGGAAATACACGGTTGGA+TGG | - | tig0021300:49498-49517 | None:intergenic | 40.0% | |
| TCATGAAGTCTTTGAACGGT+TGG | - | tig0021300:49533-49552 | None:intergenic | 40.0% | |
| !!! | ACGTTTTTTTCCGCCATGAA+TGG | + | tig0021300:49563-49582 | Msa1389760:intron | 40.0% |
| ! | CTATGTTTTCCATTAGACGG+AGG | - | tig0021300:49589-49608 | None:intergenic | 40.0% |
| ATAACCTTTGGACGATGTCT+AGG | + | tig0021300:49727-49746 | Msa1389760:intron | 40.0% | |
| ! | GCAACATCAATTGTTGCTTG+AGG | - | tig0021300:49804-49823 | None:intergenic | 40.0% |
| GCAACAATTGATGTTGCTCT+TGG | + | tig0021300:49807-49826 | Msa1389760:intron | 40.0% | |
| AGATGACTCTATCAACAGTG+AGG | - | tig0021300:49860-49879 | None:intergenic | 40.0% | |
| GTTAAGTAGAAGTTCAGGGT+CGG | - | tig0021300:49994-50013 | None:intergenic | 40.0% | |
| GTAACATTTCTCCACCCTAT+AGG | + | tig0021300:50075-50094 | Msa1389760:intron | 40.0% | |
| AATTAAGCCAACCTATAGGG+TGG | - | tig0021300:50089-50108 | None:intergenic | 40.0% | |
| AGCGTCCTATTTCATAGGAA+CGG | - | tig0021300:50154-50173 | None:intergenic | 40.0% | |
| TTCCTATGAAATAGGACGCT+CGG | + | tig0021300:50154-50173 | Msa1389760:intron | 40.0% | |
| GTAGGAAAGAGGAAAACGAA+TGG | + | tig0021300:50356-50375 | Msa1389760:intron | 40.0% | |
| TTTCACAATGCTCGTCGAAA+AGG | + | tig0021300:50560-50579 | Msa1389760:intron | 40.0% | |
| GGTATCTGATTGATACTCCT+AGG | - | tig0021300:50921-50940 | None:intergenic | 40.0% | |
| ! | GATTCTCTCTGATGCTGATT+TGG | + | tig0021300:51009-51028 | Msa1389760:intron | 40.0% |
| TAGAAGAATTGCCGTCCATT+TGG | + | tig0021300:51234-51253 | Msa1389760:intron | 40.0% | |
| ! | TGCAGCACTATTTTCTGTCA+TGG | - | tig0021300:51898-51917 | None:intergenic | 40.0% |
| ACAGAAAATAGTGCTGCAAG+TGG | + | tig0021300:51900-51919 | Msa1389760:intron | 40.0% | |
| GACCAGAAATTGACCTTAAC+AGG | + | tig0021300:52127-52146 | Msa1389760:CDS | 40.0% | |
| CTCCTGTTAAGGTCAATTTC+TGG | - | tig0021300:52132-52151 | None:intergenic | 40.0% | |
| AACGTCTATGTCTCCTGTTA+AGG | - | tig0021300:52143-52162 | None:intergenic | 40.0% | |
| ATAGACGTTGTGCATGTAGT+GGG | + | tig0021300:52154-52173 | Msa1389760:CDS | 40.0% | |
| ! | TGCATGTAGTGGGAAAGTTA+AGG | + | tig0021300:52164-52183 | Msa1389760:CDS | 40.0% |
| GGTCCAACAGATAGTATCTT+AGG | - | tig0021300:52202-52221 | None:intergenic | 40.0% | |
| AATAAGAATTCAGCAGCTCC+TGG | + | tig0021300:52280-52299 | Msa1389760:CDS | 40.0% | |
| TCACAAACCTTCACAAAACC+AGG | - | tig0021300:52301-52320 | None:intergenic | 40.0% | |
| TGTGGTTGTGTCATCATCAT+AGG | - | tig0021300:52337-52356 | None:intergenic | 40.0% | |
| TAACAGATGACACATGCACT+AGG | - | tig0021300:52388-52407 | None:intergenic | 40.0% | |
| TTATGGAAGCTACTGAGCTG+AGG | - | tig0021300:47507-47526 | None:intergenic | 45.0% | |
| ATCTCGTGACTCTATACCGT+CGG | + | tig0021300:47889-47908 | Msa1389760:intron | 45.0% | |
| AACATTTCAGACGTGACCGA+CGG | - | tig0021300:47908-47927 | None:intergenic | 45.0% | |
| CATTGATCCAGTACGTGTAG+TGG | + | tig0021300:48170-48189 | Msa1389760:CDS | 45.0% | |
| TACGTGTAGTGGCTAAGCTA+AGG | + | tig0021300:48181-48200 | Msa1389760:CDS | 45.0% | |
| TTCAGTTGGACCAGCTAAAG+AGG | + | tig0021300:48227-48246 | Msa1389760:CDS | 45.0% | |
| GGTGTACCATAGAGCATGAA+AGG | - | tig0021300:48327-48346 | None:intergenic | 45.0% | |
| GCACGGTGGTATGAATTGTA+TGG | - | tig0021300:48378-48397 | None:intergenic | 45.0% | |
| AGGATCCTCTTCAACGCTTA+TGG | - | tig0021300:48400-48419 | None:intergenic | 45.0% | |
| ! | AGCGTTGAAGAGGATCCTAA+TGG | + | tig0021300:48402-48421 | Msa1389760:CDS | 45.0% |
| ! | CATGGCTAGACCTTTGTTTC+TGG | - | tig0021300:48719-48738 | None:intergenic | 45.0% |
| AAAGGTCTAGCCATGTTGTG+TGG | + | tig0021300:48724-48743 | Msa1389760:intron | 45.0% | |
| GATGTCCAAGATTTGATCCC+TGG | + | tig0021300:48759-48778 | Msa1389760:intron | 45.0% | |
| !!! | CTTTTTGTGATGATGGGGAG+AGG | + | tig0021300:48924-48943 | Msa1389760:intron | 45.0% |
| GAAGACACACTCGTTGCTAA+TGG | + | tig0021300:49411-49430 | Msa1389760:intron | 45.0% | |
| GGTTGGATCCTACGCTTTAT+TGG | - | tig0021300:49516-49535 | None:intergenic | 45.0% | |
| TCATCCTAGACATCGTCCAA+AGG | - | tig0021300:49734-49753 | None:intergenic | 45.0% | |
| TGATGTTGCTCTTGGTAAGC+AGG | + | tig0021300:49815-49834 | Msa1389760:intron | 45.0% | |
| GGGTGGAGAAATGTTACATG+TGG | - | tig0021300:50072-50091 | None:intergenic | 45.0% | |
| CATTTCTCCACCCTATAGGT+TGG | + | tig0021300:50079-50098 | Msa1389760:intron | 45.0% | |
| AACCGAGCGTCCTATTTCAT+AGG | - | tig0021300:50159-50178 | None:intergenic | 45.0% | |
| TTTCCTCTTTCCTACGACGT+AGG | - | tig0021300:50351-50370 | None:intergenic | 45.0% | |
| TGTGATTCTTTCAATCGGGG+TGG | + | tig0021300:50403-50422 | Msa1389760:intron | 45.0% | |
| GTGATTCTTTCAATCGGGGT+GGG | + | tig0021300:50404-50423 | Msa1389760:intron | 45.0% | |
| ! | TTGAGGCCCATAGTTTGTAG+AGG | + | tig0021300:50441-50460 | Msa1389760:intron | 45.0% |
| ACCGAGCCTCTACAAACTAT+GGG | - | tig0021300:50450-50469 | None:intergenic | 45.0% | |
| TCTTCATTCATTTGCCCAGC+TGG | + | tig0021300:50715-50734 | Msa1389760:intron | 45.0% | |
| AGCACGAGACCAATCCAAAT+AGG | - | tig0021300:50942-50961 | None:intergenic | 45.0% | |
| !! | CTCTCTGATGCTGATTTGGA+CGG | + | tig0021300:51013-51032 | Msa1389760:intron | 45.0% |
| CAAAGTCCTGAGTTCGAATG+CGG | + | tig0021300:51182-51201 | Msa1389760:intron | 45.0% | |
| CTTTGCAGGATCCAAATGGA+CGG | - | tig0021300:51248-51267 | None:intergenic | 45.0% | |
| TGAAACTTAGCTCAGGTCCA+AGG | - | tig0021300:51500-51519 | None:intergenic | 45.0% | |
| GGTGTACTGAAACTTAGCTC+AGG | - | tig0021300:51507-51526 | None:intergenic | 45.0% | |
| AATCCTTGTAGTTGCAGCTG+CGG | + | tig0021300:51527-51546 | Msa1389760:intron | 45.0% | |
| AGGGGTTGAGTCAGTTTCTT+TGG | + | tig0021300:52096-52115 | Msa1389760:intron | 45.0% | |
| CATAGACGTTGTGCATGTAG+TGG | + | tig0021300:52153-52172 | Msa1389760:CDS | 45.0% | |
| CTCTTCTTTCTTAGGCTCCT+TGG | - | tig0021300:52227-52246 | None:intergenic | 45.0% | |
| AGAGAAAAAGAAGCCAGCAG+AGG | + | tig0021300:52243-52262 | Msa1389760:CDS | 45.0% | |
| ! | TGATCCTTTTTCTCCTCTGC+TGG | - | tig0021300:52259-52278 | None:intergenic | 45.0% |
| !!! | AAAAATTAATTCAATATTTT+TGG | + | tig0021300:48467-48486 | Msa1389760:intron | 5.0% |
| !! | AAAATAAATAATAAAACTAT+GGG | - | tig0021300:51601-51620 | None:intergenic | 5.0% |
| !! | AAAAATAAATAATAAAACTA+TGG | - | tig0021300:51602-51621 | None:intergenic | 5.0% |
| ! | AAAGCAGTCTCTGGCCTTTC+AGG | + | tig0021300:47790-47809 | Msa1389760:CDS | 50.0% |
| AGCTTAGCCACTACACGTAC+TGG | - | tig0021300:48180-48199 | None:intergenic | 50.0% | |
| CCTCTTCAACGCTTATGGCA+CGG | - | tig0021300:48395-48414 | None:intergenic | 50.0% | |
| ! | TTGAGCTAGAGTGATTCGGC+CGG | - | tig0021300:48849-48868 | None:intergenic | 50.0% |
| CATTAGACGGAGGCCATTCA+TGG | - | tig0021300:49579-49598 | None:intergenic | 50.0% | |
| CATGAATGGCCTCCGTCTAA+TGG | + | tig0021300:49577-49596 | Msa1389760:intron | 50.0% | |
| CAGGGCCGTTCCTATGAAAT+AGG | + | tig0021300:50146-50165 | Msa1389760:intron | 50.0% | |
| GAATGTCACTCCTACGTCGT+AGG | + | tig0021300:50338-50357 | Msa1389760:intron | 50.0% | |
| ACTCCTACGTCGTAGGAAAG+AGG | + | tig0021300:50345-50364 | Msa1389760:intron | 50.0% | |
| ! | GCCCATAGTTTGTAGAGGCT+CGG | + | tig0021300:50446-50465 | Msa1389760:intron | 50.0% |
| CACCGAGCCTCTACAAACTA+TGG | - | tig0021300:50451-50470 | None:intergenic | 50.0% | |
| ! | TTTTGACACTCCCCAAGGTC+CGG | + | tig0021300:50480-50499 | Msa1389760:intron | 50.0% |
| CTTATTGGACTCTGCCACTC+AGG | - | tig0021300:50507-50526 | None:intergenic | 50.0% | |
| ATTCGAGCAACTAGCCAGCT+GGG | - | tig0021300:50732-50751 | None:intergenic | 50.0% | |
| AATTCGAGCAACTAGCCAGC+TGG | - | tig0021300:50733-50752 | None:intergenic | 50.0% | |
| CTAAGACCGCATTCGAACTC+AGG | - | tig0021300:51191-51210 | None:intergenic | 50.0% | |
| CGAGCTTTGCAGGATCCAAA+TGG | - | tig0021300:51252-51271 | None:intergenic | 50.0% | |
| GCAGCTGCAACTACAAGGAT+TGG | - | tig0021300:51528-51547 | None:intergenic | 50.0% | |
| ACTATCTGTTGGACCAGCCA+AGG | + | tig0021300:52207-52226 | Msa1389760:CDS | 50.0% | |
| TCTTTCTTAGGCTCCTTGGC+TGG | - | tig0021300:52223-52242 | None:intergenic | 50.0% | |
| GAAGCCAGCAGAGGAGAAAA+AGG | + | tig0021300:52252-52271 | Msa1389760:CDS | 50.0% | |
| !!! | AGCAGCTCCTGGTTTTGTGA+AGG | + | tig0021300:52291-52310 | Msa1389760:CDS | 50.0% |
| CTTCAACGCTTATGGCACGG+TGG | - | tig0021300:48392-48411 | None:intergenic | 55.0% | |
| !! | CCGTGCCATAAGCGTTGAAG+AGG | + | tig0021300:48392-48411 | Msa1389760:CDS | 55.0% |
| CCAAGTCTGCCATCCTCCTT+AGG | - | tig0021300:49028-49047 | None:intergenic | 55.0% | |
| CCTAAGGAGGATGGCAGACT+TGG | + | tig0021300:49025-49044 | Msa1389760:intron | 55.0% | |
| TAGACGGAGGCCATTCATGG+CGG | - | tig0021300:49576-49595 | None:intergenic | 55.0% | |
| AAGGTTGCTGAAGTGGCAGC+AGG | + | tig0021300:50127-50146 | Msa1389760:intron | 55.0% | |
| AGGTTGCTGAAGTGGCAGCA+GGG | + | tig0021300:50128-50147 | Msa1389760:intron | 55.0% | |
| ! | AGCGCTTTTGACACTCCCCA+AGG | + | tig0021300:50475-50494 | Msa1389760:intron | 55.0% |
| GCTCGTCGAAAAGGCAGTTC+TGG | + | tig0021300:50569-50588 | Msa1389760:intron | 55.0% | |
| AGACCGCAGCTGCAACTACA+AGG | - | tig0021300:51533-51552 | None:intergenic | 55.0% | |
| TGGACTCTGCCACTCAGGAC+CGG | - | tig0021300:50502-50521 | None:intergenic | 60.0% | |
| CCACTCAGGACCGGACCTTG+GGG | - | tig0021300:50493-50512 | None:intergenic | 65.0% | |
| GCCACTCAGGACCGGACCTT+GGG | - | tig0021300:50494-50513 | None:intergenic | 65.0% | |
| TGCCACTCAGGACCGGACCT+TGG | - | tig0021300:50495-50514 | None:intergenic | 65.0% | |
| CCCCAAGGTCCGGTCCTGAG+TGG | + | tig0021300:50490-50509 | Msa1389760:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021300 | gene | 47329 | 52502 | 47329 | ID=Msa1389760;Name=Msa1389760 |
| tig0021300 | mRNA | 47329 | 52502 | 47329 | ID=Msa1389760-mRNA-1;Parent=Msa1389760;Name=Msa1389760-mRNA-1;_AED=0.13;_eAED=0.13;_QI=202|0.75|0.6|1|1|1|5|94|260 |
| tig0021300 | exon | 47329 | 47536 | 47329 | ID=Msa1389760-mRNA-1:exon:11799;Parent=Msa1389760-mRNA-1 |
| tig0021300 | exon | 47736 | 47811 | 47736 | ID=Msa1389760-mRNA-1:exon:11800;Parent=Msa1389760-mRNA-1 |
| tig0021300 | exon | 48115 | 48428 | 48115 | ID=Msa1389760-mRNA-1:exon:11801;Parent=Msa1389760-mRNA-1 |
| tig0021300 | exon | 51904 | 51979 | 51904 | ID=Msa1389760-mRNA-1:exon:11802;Parent=Msa1389760-mRNA-1 |
| tig0021300 | exon | 52098 | 52502 | 52098 | ID=Msa1389760-mRNA-1:exon:11803;Parent=Msa1389760-mRNA-1 |
| tig0021300 | five_prime_UTR | 47329 | 47530 | 47329 | ID=Msa1389760-mRNA-1:five_prime_utr;Parent=Msa1389760-mRNA-1 |
| tig0021300 | CDS | 47531 | 47536 | 47531 | ID=Msa1389760-mRNA-1:cds;Parent=Msa1389760-mRNA-1 |
| tig0021300 | CDS | 47736 | 47811 | 47736 | ID=Msa1389760-mRNA-1:cds;Parent=Msa1389760-mRNA-1 |
| tig0021300 | CDS | 48115 | 48428 | 48115 | ID=Msa1389760-mRNA-1:cds;Parent=Msa1389760-mRNA-1 |
| tig0021300 | CDS | 51904 | 51979 | 51904 | ID=Msa1389760-mRNA-1:cds;Parent=Msa1389760-mRNA-1 |
| tig0021300 | CDS | 52098 | 52408 | 52098 | ID=Msa1389760-mRNA-1:cds;Parent=Msa1389760-mRNA-1 |
| tig0021300 | three_prime_UTR | 52409 | 52502 | 52409 | ID=Msa1389760-mRNA-1:three_prime_utr;Parent=Msa1389760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
