AlfalfaGEDB | Msa0040710

M. sativa cultivar zhongmu-4 / Msa0040710

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0040710	Msa0537720	0.808471	3.046515e-50	-8.615850e-47
Msa0040710	Msa0826320	0.810516	1.108860e-50	-8.615850e-47
Msa0040710	Msa1384240	0.814843	1.252930e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0040710	MtrunA17_Chr8g0353391	66.667	51	6	1	165	215	34	73	5.22e-15	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 118 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATACAGGTTAGTGA+GGG	0.596925	1_1:+70986580	Msa0040710:three_prime_UTR
AAACTTCACAATATTGAATT+TGG	0.173709	1_1:-70986783	None:intergenic
AAATAAGTTATGAACCTTAG+TGG	0.390097	1_1:+70985863	Msa0040710:three_prime_UTR
AAATTCAATCAGATTCTTTA+AGG	0.168849	1_1:-70986653	None:intergenic
AACAGGATCTGCCACATTTA+CGG	0.343192	1_1:+70986485	Msa0040710:three_prime_UTR
AACAGTTGAACCCATCAATC+TGG	0.432006	1_1:+70987021	Msa0040710:three_prime_UTR
AACTATTTAGAGCTGGTTCA+AGG	0.445517	1_1:+70985359	Msa0040710:CDS
AAGCCTTGGAGGAATTGAAG+CGG	0.643490	1_1:+70981345	Msa0040710:CDS
AAGGCAATTGCTTCTTACAT+TGG	0.487794	1_1:-70986634	None:intergenic
AAGTGGCAGAAGATCTTGGA+AGG	0.623015	1_1:+70986023	Msa0040710:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTGAATTGTGAACAACA+TGG	+	chr1_1:70981900-70981919	Msa0040710:intron	30.0%
ATGGCATTTGTAGTATCTAA+GGG	-	chr1_1:70982376-70982395	None:intergenic	30.0%
AATGGCATTTGTAGTATCTA+AGG	-	chr1_1:70982377-70982396	None:intergenic	30.0%
TTAATTCAAAAACCATCAGC+AGG	+	chr1_1:70982694-70982713	Msa0040710:intron	30.0%
TAATTCAAAAACCATCAGCA+GGG	+	chr1_1:70982695-70982714	Msa0040710:intron	30.0%
TAAGCTATAAGCTAGTTATG+TGG	+	chr1_1:70983591-70983610	Msa0040710:intron	30.0%
TTGTTAGTACTAGAAGAAGA+AGG	+	chr1_1:70983832-70983851	Msa0040710:CDS	30.0%
TGTTGTGAAATTGAGAGTAA+TGG	+	chr1_1:70984225-70984244	Msa0040710:intron	30.0%
TTATGTTAAGCGTATACTAC+TGG	+	chr1_1:70984547-70984566	Msa0040710:intron	30.0%
AATAAGAACCAAGAGAACAT+AGG	-	chr1_1:70985734-70985753	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	70981238	70987050	70981238	ID=Msa0040710;Name=Msa0040710
chr1_1	mRNA	70981238	70987050	70981238	ID=Msa0040710-mRNA-1;Parent=Msa0040710;Name=Msa0040710-mRNA-1;_AED=0.17;_eAED=0.28;_QI=0\|0.25\|0.4\|1\|1\|1\|5\|1548\|215
chr1_1	exon	70981238	70981404	70981238	ID=Msa0040710-mRNA-1:exon:23435;Parent=Msa0040710-mRNA-1
chr1_1	exon	70982004	70982123	70982004	ID=Msa0040710-mRNA-1:exon:23436;Parent=Msa0040710-mRNA-1
chr1_1	exon	70983752	70983884	70983752	ID=Msa0040710-mRNA-1:exon:23437;Parent=Msa0040710-mRNA-1
chr1_1	exon	70984700	70984771	70984700	ID=Msa0040710-mRNA-1:exon:23438;Parent=Msa0040710-mRNA-1
chr1_1	exon	70985347	70987050	70985347	ID=Msa0040710-mRNA-1:exon:23439;Parent=Msa0040710-mRNA-1
chr1_1	CDS	70981238	70981404	70981238	ID=Msa0040710-mRNA-1:cds;Parent=Msa0040710-mRNA-1
chr1_1	CDS	70982004	70982123	70982004	ID=Msa0040710-mRNA-1:cds;Parent=Msa0040710-mRNA-1
chr1_1	CDS	70983752	70983884	70983752	ID=Msa0040710-mRNA-1:cds;Parent=Msa0040710-mRNA-1
chr1_1	CDS	70984700	70984771	70984700	ID=Msa0040710-mRNA-1:cds;Parent=Msa0040710-mRNA-1
chr1_1	CDS	70985347	70985502	70985347	ID=Msa0040710-mRNA-1:cds;Parent=Msa0040710-mRNA-1
chr1_1	three_prime_UTR	70985503	70987050	70985503	ID=Msa0040710-mRNA-1:three_prime_utr;Parent=Msa0040710-mRNA-1

Gene Sequence

>Msa0040710

ATGGCAACCGAATCAAACCTCGAAACTGAATGTGAAATCGGAGAAGCCTTCCGATCTTCTGAACATGGCGGAGGTGGAGACAGAAGCGGAGGCGAAGAAGAAGGAAGAAGCCTTGGAGGAATTGAAGCGGTGAAGGATTTCCACGAGGAAGATGATTCGGTGAAGCGTTTGATTCCATGCTCATTTGATTTTGTGCTTAAACTGAACATACGTGCTGGGAGATGTTCTGAACGAAAGCAGCAGATCACTATGGGACACAAGATGAAGTTGCGACTCACTAAGAAAAGTCGCTGCTTTTCTTCATCTTCATCGCCTACAGTTCCGGCCACCTCACCGGAACTAGAAGAAGGTGTTGGCGGAGAGGAGTTTGTTAGTACTAGAAGAAGAAGGAGGAGTTTTGCGGTGGTAGTGAAAATGAAGGTTTATGTCATTGGAGAAGATGACATCTTGAAGGAGCTTGAGCTTGCTGGATATCAGTATGTTGGTGGGCCGATGTTTGTGCTTAACTATTTAGAGCTGGTTCAAGGTAATTTTCGGCATAATTTGGAGCGAGGTCGAGGCAATTTTCTGCATAATTTAGAGCTGGTTTTCGGCATTTGGACTAATGCAATGCAGCAGCTGTGTTTTGGTACTGCACCTGCTACGTAG

Protein sequence

>Msa0040710

MATESNLETECEIGEAFRSSEHGGGGDRSGGEEEGRSLGGIEAVKDFHEEDDSVKRLIPCSFDFVLKLNIRAGRCSERKQQITMGHKMKLRLTKKSRCFSSSSSPTVPATSPELEEGVGGEEFVSTRRRRRSFAVVVKMKVYVIGEDDILKELELAGYQYVGGPMFVLNYLELVQGNFRHNLERGRGNFLHNLELVFGIWTNAMQQLCFGTAPAT*