AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040710 MtrunA17_Chr8g0353391 66.667 51 6 1 165 215 34 73 5.22e-15 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 118 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATGCTTTACATAAAATT+TGG 0.111853 1_1:+70986880 Msa0040710:three_prime_UTR
CAAGATCTTCTGCCACTTAA+TGG 0.162532 1_1:-70986018 None:intergenic
AAATTCAATCAGATTCTTTA+AGG 0.168849 1_1:-70986653 None:intergenic
CTCTTTAGTGTAGTTGATTT+TGG 0.172373 1_1:+70985686 Msa0040710:three_prime_UTR
AAACTTCACAATATTGAATT+TGG 0.173709 1_1:-70986783 None:intergenic
TTTCTTTCCATTACAATAAC+TGG 0.228648 1_1:-70986464 None:intergenic
TCCTTGGTCTTCAAGTGTTT+TGG 0.241519 1_1:+70985580 Msa0040710:three_prime_UTR
TATGGGCATAGTGTGTATTT+TGG 0.259220 1_1:+70986235 Msa0040710:three_prime_UTR
TTAATCATGTAAACTTGATT+TGG 0.269817 1_1:+70986964 Msa0040710:three_prime_UTR
TCTCTTGGTTCTTATTTCCT+TGG 0.283416 1_1:+70985738 Msa0040710:three_prime_UTR
CAGAATAGGTTGTTGTAGTT+TGG 0.288548 1_1:+70985663 Msa0040710:three_prime_UTR
CTCTTGGTTCTTATTTCCTT+GGG 0.302979 1_1:+70985739 Msa0040710:three_prime_UTR
GCACATTTGTCTCTAAGAAT+TGG 0.315407 1_1:+70986125 Msa0040710:three_prime_UTR
TTGAAGGAGCTTGAGCTTGC+TGG 0.325512 1_1:+70984727 Msa0040710:CDS
AACAGGATCTGCCACATTTA+CGG 0.343192 1_1:+70986485 Msa0040710:three_prime_UTR
ATGATTTAGGTTTATGTCAT+TGG 0.349189 1_1:+70984691 Msa0040710:intron
GTCGGAACAACTTGTCAAAC+AGG 0.352958 1_1:-70985985 None:intergenic
TGACAAGTTGTTCCGACTTA+AGG 0.360519 1_1:+70985991 Msa0040710:three_prime_UTR
TTATGCTTTACATAAAATTT+GGG 0.363339 1_1:+70986881 Msa0040710:three_prime_UTR
TTATGTAGTCTCAAAACTAT+AGG 0.363744 1_1:+70985828 Msa0040710:three_prime_UTR
ATTCTATTGAGAGTATTCAT+AGG 0.377050 1_1:+70986543 Msa0040710:three_prime_UTR
GATGGTTTCCTATGTTCTCT+TGG 0.388558 1_1:+70985723 Msa0040710:three_prime_UTR
AAATAAGTTATGAACCTTAG+TGG 0.390097 1_1:+70985863 Msa0040710:three_prime_UTR
ACGAAAGCAGCAGATCACTA+TGG 0.390710 1_1:+70982067 Msa0040710:CDS
ACAAAGAAAGTAACACTTTG+AGG 0.392195 1_1:-70986171 None:intergenic
TTGTGACTTTAAAATGATAC+AGG 0.394316 1_1:+70986570 Msa0040710:three_prime_UTR
CGATTTCACATTCAGTTTCG+AGG 0.398497 1_1:-70981255 None:intergenic
ATCTTCATCGCCTACAGTTC+CGG 0.399080 1_1:+70983767 Msa0040710:CDS
CCAACACCTTCTTCTAGTTC+CGG 0.400442 1_1:-70983798 None:intergenic
CAACGTTCCAGTTATTGTAA+TGG 0.408423 1_1:+70986457 Msa0040710:three_prime_UTR
TTCAGTTTCGAGGTTTGATT+CGG 0.421092 1_1:-70981245 None:intergenic
CTTTGAGGACCATGTATTGC+AGG 0.423249 1_1:-70986156 None:intergenic
CTCGAAACTGAATGTGAAAT+CGG 0.431401 1_1:+70981256 Msa0040710:CDS
AACAGTTGAACCCATCAATC+TGG 0.432006 1_1:+70987021 Msa0040710:three_prime_UTR
GCAATGCAGCAGCTGTGTTT+TGG 0.445181 1_1:+70985461 Msa0040710:CDS
AACTATTTAGAGCTGGTTCA+AGG 0.445517 1_1:+70985359 Msa0040710:CDS
TCTTCTGAACATGGCGGAGG+TGG 0.461166 1_1:+70981292 Msa0040710:CDS
GGTTCTTAATCGAGTCATCT+TGG 0.469311 1_1:+70986064 Msa0040710:three_prime_UTR
GAGGCCAACATCCAGATTGA+TGG 0.472561 1_1:-70987032 None:intergenic
TTATTGTAATGGAAAGAAAC+AGG 0.475454 1_1:+70986468 Msa0040710:three_prime_UTR
CATAATTTGGAGCGAGGTCG+AGG 0.477557 1_1:+70985392 Msa0040710:CDS
TGTGCTTAACTATTTAGAGC+TGG 0.478058 1_1:+70985352 Msa0040710:CDS
TTTCCACGAGGAAGATGATT+CGG 0.480029 1_1:+70981375 Msa0040710:CDS
CATTAAGTGGCAGAAGATCT+TGG 0.480410 1_1:+70986019 Msa0040710:three_prime_UTR
GTTAAATTTATTGTATGTTG+TGG 0.484643 1_1:+70986192 Msa0040710:three_prime_UTR
TCTAGTTCCGGTGAGGTGGC+CGG 0.485296 1_1:-70983786 None:intergenic
AAGGCAATTGCTTCTTACAT+TGG 0.487794 1_1:-70986634 None:intergenic
GTGTTCCAGCTGCAACATAT+CGG 0.493234 1_1:+70985539 Msa0040710:three_prime_UTR
ATCTTCTGCCACTTAATGGC+TGG 0.493970 1_1:-70986014 None:intergenic
TAAAACCGATATGTTGCAGC+TGG 0.495604 1_1:-70985544 None:intergenic
TTGTTAGTACTAGAAGAAGA+AGG 0.498475 1_1:+70983832 Msa0040710:CDS
GTTCATTTCAAGAGTTTATG+TGG 0.499418 1_1:-70985957 None:intergenic
AGAAGCGGAGGCGAAGAAGA+AGG 0.504316 1_1:+70981319 Msa0040710:CDS
TACAGTTCCGGCCACCTCAC+CGG 0.504833 1_1:+70983779 Msa0040710:CDS
CTCCGCCATGTTCAGAAGAT+CGG 0.507404 1_1:-70981288 None:intergenic
GAAGAAGGAAGAAGCCTTGG+AGG 0.507888 1_1:+70981334 Msa0040710:CDS
TTCTATTGAGAGTATTCATA+GGG 0.509068 1_1:+70986544 Msa0040710:three_prime_UTR
TGATTAATGACTTTAGAGTA+AGG 0.509391 1_1:-70986948 None:intergenic
GGTGAGGTGGCCGGAACTGT+AGG 0.519070 1_1:-70983777 None:intergenic
GATATCGCATAACACATTCA+AGG 0.523578 1_1:-70986300 None:intergenic
TGGAGGAATTGAAGCGGTGA+AGG 0.523839 1_1:+70981351 Msa0040710:CDS
AGGTCTTCCACTACTAAAGA+TGG 0.524376 1_1:+70986043 Msa0040710:three_prime_UTR
TGGAGAAGATGACATCTTGA+AGG 0.524952 1_1:+70984711 Msa0040710:CDS
CGATCTTCTGAACATGGCGG+AGG 0.529925 1_1:+70981289 Msa0040710:CDS
GCTGGATATCAGTATGTTGG+TGG 0.534636 1_1:+70984745 Msa0040710:CDS
TTCTTCTAGTTCCGGTGAGG+TGG 0.541858 1_1:-70983790 None:intergenic
TCACCGCTTCAATTCCTCCA+AGG 0.543054 1_1:-70981348 None:intergenic
GAAAGCCGACCTGCAATACA+TGG 0.546704 1_1:+70986147 Msa0040710:three_prime_UTR
GAGCTCTTTGTTGAGACCAT+CGG 0.547665 1_1:-70986093 None:intergenic
ATTGCAAACAGATCCTCAAA+AGG 0.547787 1_1:+70986347 Msa0040710:three_prime_UTR
CGAAAGCAGCAGATCACTAT+GGG 0.549177 1_1:+70982068 Msa0040710:CDS
GAAGAAGAAGGAAGAAGCCT+TGG 0.549696 1_1:+70981331 Msa0040710:CDS
TTAAGAACCATCTTTAGTAG+TGG 0.551452 1_1:-70986050 None:intergenic
GAACCCATCAATCTGGATGT+TGG 0.557043 1_1:+70987028 Msa0040710:three_prime_UTR
AGGCCAACATCCAGATTGAT+GGG 0.558292 1_1:-70987031 None:intergenic
ACAACTTGTCAAACAGGGTA+AGG 0.558391 1_1:-70985979 None:intergenic
TACTGCATAACCACATAACC+TGG 0.563969 1_1:-70986759 None:intergenic
ACTTAAGGCCAGCCATTAAG+TGG 0.567222 1_1:+70986006 Msa0040710:three_prime_UTR
AGCACAAAATCAAATGAGCA+TGG 0.568345 1_1:-70982011 None:intergenic
AATAAGAACCAAGAGAACAT+AGG 0.569125 1_1:-70985731 None:intergenic
CTTAAACTGAACATACGTGC+TGG 0.571209 1_1:+70982032 Msa0040710:CDS
CAGAGACAAATCAGAACGTA+GGG 0.572159 1_1:-70985517 None:intergenic
TAAAATGATACAGGTTAGTG+AGG 0.572877 1_1:+70986579 Msa0040710:three_prime_UTR
GTCATCTTGGTAGTGACCGA+TGG 0.587840 1_1:+70986077 Msa0040710:three_prime_UTR
GAGGACCATGTATTGCAGGT+CGG 0.590160 1_1:-70986152 None:intergenic
CTTGCTGGATATCAGTATGT+TGG 0.590796 1_1:+70984742 Msa0040710:CDS
GAACTAGAAGAAGGTGTTGG+CGG 0.591922 1_1:+70983801 Msa0040710:CDS
AGAAGAAGGTGTTGGCGGAG+AGG 0.591969 1_1:+70983806 Msa0040710:CDS
ATATCAGTATGTTGGTGGGC+CGG 0.592199 1_1:+70984750 Msa0040710:CDS
GCCTTCCGATCTTCTGAACA+TGG 0.592395 1_1:+70981283 Msa0040710:CDS
CTCAACAAAGAGCTCTGTGT+CGG 0.593135 1_1:+70986101 Msa0040710:three_prime_UTR
TCACAACAACTAATCCACTA+AGG 0.593194 1_1:-70985877 None:intergenic
AGTTGCGACTCACTAAGAAA+AGG 0.593642 1_1:+70982102 Msa0040710:CDS
TGCGGTGGTAGTGAAAATGA+AGG 0.595938 1_1:+70983863 Msa0040710:CDS
AAAATGATACAGGTTAGTGA+GGG 0.596925 1_1:+70986580 Msa0040710:three_prime_UTR
TTAGTACTAGAAGAAGAAGG+AGG 0.603731 1_1:+70983835 Msa0040710:CDS
TTAAACTGAACATACGTGCT+GGG 0.606992 1_1:+70982033 Msa0040710:CDS
TTTCGGCATAATTTGGAGCG+AGG 0.610515 1_1:+70985386 Msa0040710:CDS
GCCAAAACACTTGAAGACCA+AGG 0.614914 1_1:-70985581 None:intergenic
CTTAATGGCTGGCCTTAAGT+CGG 0.615020 1_1:-70986003 None:intergenic
CCGGAACTAGAAGAAGGTGT+TGG 0.615178 1_1:+70983798 Msa0040710:CDS
TCACCGAATCATCTTCCTCG+TGG 0.615873 1_1:-70981378 None:intergenic
AAGTGGCAGAAGATCTTGGA+AGG 0.623015 1_1:+70986023 Msa0040710:three_prime_UTR
GGCGGAGGTGGAGACAGAAG+CGG 0.624945 1_1:+70981304 Msa0040710:CDS
ACCTTCTTCTAGTTCCGGTG+AGG 0.634237 1_1:-70983793 None:intergenic
GCCATGTTCAGAAGATCGGA+AGG 0.635714 1_1:-70981284 None:intergenic
ACCTCACCGGAACTAGAAGA+AGG 0.637847 1_1:+70983792 Msa0040710:CDS
AAGCCTTGGAGGAATTGAAG+CGG 0.643490 1_1:+70981345 Msa0040710:CDS
GGAGGTGGAGACAGAAGCGG+AGG 0.644926 1_1:+70981307 Msa0040710:CDS
CTGGATATCAGTATGTTGGT+GGG 0.645009 1_1:+70984746 Msa0040710:CDS
AGGAAGATGATTCGGTGAAG+CGG 0.649811 1_1:+70981383 Msa0040710:CDS
ACAGAGACAAATCAGAACGT+AGG 0.652100 1_1:-70985518 None:intergenic
TCGGAACAACTTGTCAAACA+GGG 0.662554 1_1:-70985984 None:intergenic
AGACAAATCAGAACGTAGGG+AGG 0.680115 1_1:-70985514 None:intergenic
GTAGCAGTAAAAGAAACCCA+AGG 0.681773 1_1:-70985755 None:intergenic
GTACTGCACCTGCTACGTAG+CGG 0.712225 1_1:+70985483 Msa0040710:CDS
TTCCGATCTTCTGAACATGG+CGG 0.723601 1_1:+70981286 Msa0040710:CDS
AGCGGTGAAGGATTTCCACG+AGG 0.775630 1_1:+70981363 Msa0040710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr1_1:70984444-70984463 Msa0040710:intron 0.0%
!!! AACTTTTGTTTAATTTTTTT+TGG - chr1_1:70983090-70983109 None:intergenic 10.0%
!!! AAAAAGTAACATTTTTTTTA+AGG + chr1_1:70983184-70983203 Msa0040710:intron 10.0%
!!! AAAAGTAACATTTTTTTTAA+GGG + chr1_1:70983185-70983204 Msa0040710:intron 10.0%
!!! AATTTATGAATTTTCAAATT+AGG + chr1_1:70984282-70984301 Msa0040710:intron 10.0%
!!! ATTTATGAATTTTCAAATTA+GGG + chr1_1:70984283-70984302 Msa0040710:intron 10.0%
!! GATTAAAAAAAATGATAAAA+TGG - chr1_1:70984860-70984879 None:intergenic 10.0%
!!! TATATCATATCATAAATTTT+AGG + chr1_1:70985032-70985051 Msa0040710:intron 10.0%
!! CAATGAAAAAAATAGTATTT+GGG - chr1_1:70981503-70981522 None:intergenic 15.0%
!! AAAAAAACATAACTTCATAT+CGG - chr1_1:70981672-70981691 None:intergenic 15.0%
!! GATAGAAAAATAACTAATTT+AGG - chr1_1:70982458-70982477 None:intergenic 15.0%
!!! TTGTTTAATTTTTTTTGGAA+AGG - chr1_1:70983085-70983104 None:intergenic 15.0%
!!! CAATTAACTTTTTTTTAAGA+GGG - chr1_1:70983121-70983140 None:intergenic 15.0%
!! AATTAAATTTCAGATTTCAT+TGG - chr1_1:70983309-70983328 None:intergenic 15.0%
!!! TTTATGAATTTTCAAATTAG+GGG + chr1_1:70984284-70984303 Msa0040710:intron 15.0%
!! TATATCAACAAATTAGATTA+TGG - chr1_1:70984428-70984447 None:intergenic 15.0%
!!! ATATATATATGGTTTAGTTT+TGG + chr1_1:70984491-70984510 Msa0040710:intron 15.0%
!! TATCAGAAATAAAATGATAA+TGG - chr1_1:70984587-70984606 None:intergenic 15.0%
!!! ATCATTTTTTTTAATCAGTT+TGG + chr1_1:70984864-70984883 Msa0040710:intron 15.0%
!! ATGCATAATTTAACAAAAAT+AGG - chr1_1:70985259-70985278 None:intergenic 15.0%
!! TTTATGCTTTACATAAAATT+TGG + chr1_1:70986880-70986899 Msa0040710:three_prime_UTR 15.0%
!! TTATGCTTTACATAAAATTT+GGG + chr1_1:70986881-70986900 Msa0040710:three_prime_UTR 15.0%
!! GCAATGAAAAAAATAGTATT+TGG - chr1_1:70981504-70981523 None:intergenic 20.0%
!! AATACACAAAAACAAATCAA+GGG - chr1_1:70981649-70981668 None:intergenic 20.0%
!!! GATATGAAGTTATGTTTTTT+TGG + chr1_1:70981671-70981690 Msa0040710:intron 20.0%
!! AAGTTACTATTTGACAATAA+AGG - chr1_1:70981751-70981770 None:intergenic 20.0%
!! ATCAATTCATAATAATACTC+TGG - chr1_1:70982249-70982268 None:intergenic 20.0%
!! AAAAATGTAGGATCTAAAAA+TGG - chr1_1:70982395-70982414 None:intergenic 20.0%
!!! GTTATTTTTCTATCTTTTGT+TGG + chr1_1:70982464-70982483 Msa0040710:intron 20.0%
!!! ATAAATTTGATTGTGCTTTT+AGG + chr1_1:70982594-70982613 Msa0040710:intron 20.0%
!! TTAATCTTAAACAAAACCTA+TGG - chr1_1:70982658-70982677 None:intergenic 20.0%
!!! ACCTTTTTTTTGATTAACTT+AGG + chr1_1:70982746-70982765 Msa0040710:intron 20.0%
!!! GCAATTAACTTTTTTTTAAG+AGG - chr1_1:70983122-70983141 None:intergenic 20.0%
!! AAAAGAGCTATTTATTACAA+AGG + chr1_1:70983359-70983378 Msa0040710:intron 20.0%
!! AAAGAGCTATTTATTACAAA+GGG + chr1_1:70983360-70983379 Msa0040710:intron 20.0%
!!! GCATTTGTTTATTTGATTTT+TGG + chr1_1:70984324-70984343 Msa0040710:intron 20.0%
!! TTAAATACTTACAAAAGAAC+AGG - chr1_1:70984811-70984830 None:intergenic 20.0%
!! ATCATTGTATCATTTATGTT+AGG + chr1_1:70984917-70984936 Msa0040710:intron 20.0%
!! TTGAAAGAAAAAGATACAAT+TGG + chr1_1:70984993-70985012 Msa0040710:intron 20.0%
!!! TATTCTATAAGCGTATATTT+TGG - chr1_1:70985302-70985321 None:intergenic 20.0%
!!! TTTTAACTGACTGTTTATAT+TGG + chr1_1:70985624-70985643 Msa0040710:three_prime_UTR 20.0%
!! GTTAAATTTATTGTATGTTG+TGG + chr1_1:70986192-70986211 Msa0040710:three_prime_UTR 20.0%
!!! TTGCAATTTTGATACAAATA+TGG - chr1_1:70986334-70986353 None:intergenic 20.0%
!!! TAAAAAGAAAAAAGCATTGT+CGG - chr1_1:70986426-70986445 None:intergenic 20.0%
!! ATTTACGGTGAAAAAAAATA+GGG + chr1_1:70986500-70986519 Msa0040710:three_prime_UTR 20.0%
!! AAATTCAATCAGATTCTTTA+AGG - chr1_1:70986656-70986675 None:intergenic 20.0%
!!! CTTTCATTATTTATTTTTCC+AGG + chr1_1:70986741-70986760 Msa0040710:three_prime_UTR 20.0%
!! AAACTTCACAATATTGAATT+TGG - chr1_1:70986786-70986805 None:intergenic 20.0%
!! TTAATCATGTAAACTTGATT+TGG + chr1_1:70986964-70986983 Msa0040710:three_prime_UTR 20.0%
!! TGAAAAAAATTCAACTAACT+TGG - chr1_1:70986993-70987012 None:intergenic 20.0%
!!! AGAATGCTTTGAGTATTTTA+AGG - chr1_1:70981435-70981454 None:intergenic 25.0%
! GAATACACAAAAACAAATCA+AGG - chr1_1:70981650-70981669 None:intergenic 25.0%
! AGTAACATTGTGACAAAATA+GGG - chr1_1:70981821-70981840 None:intergenic 25.0%
! AAGTAACATTGTGACAAAAT+AGG - chr1_1:70981822-70981841 None:intergenic 25.0%
!!! GAGTTGATTTTATACTCATT+TGG + chr1_1:70981963-70981982 Msa0040710:intron 25.0%
! TGAATTGATTATCATAGAGT+TGG + chr1_1:70982260-70982279 Msa0040710:intron 25.0%
! TTTCAGCTAGATTATATAAG+TGG - chr1_1:70982427-70982446 None:intergenic 25.0%
! AGGTCATAGAACTATATAAA+TGG - chr1_1:70982721-70982740 None:intergenic 25.0%
! AATCAAAAAAAAGGTCAATG+AGG - chr1_1:70982741-70982760 None:intergenic 25.0%
! GCCTAAGTTAATCAAAAAAA+AGG - chr1_1:70982750-70982769 None:intergenic 25.0%
!! GATAAGCTAATTAAAGTGTT+TGG + chr1_1:70982875-70982894 Msa0040710:intron 25.0%
!! AAAGTGTTTGGTAAAAATAG+CGG + chr1_1:70982887-70982906 Msa0040710:intron 25.0%
! TTTATTACAAAGGGTAAACA+TGG + chr1_1:70983369-70983388 Msa0040710:intron 25.0%
! TTATTACAAAGGGTAAACAT+GGG + chr1_1:70983370-70983389 Msa0040710:intron 25.0%
! TTGACAAAATAAGTTCTGTT+TGG - chr1_1:70983548-70983567 None:intergenic 25.0%
!! TTATAGGTGACTATTTTATC+AGG - chr1_1:70983682-70983701 None:intergenic 25.0%
! AGATTTAAGCATTACCTTAA+CGG - chr1_1:70984180-70984199 None:intergenic 25.0%
!!! TGGAATCATTTGTTTTTGAT+TGG + chr1_1:70984245-70984264 Msa0040710:intron 25.0%
!!! ATTTTTGGTTATTCGTTATC+TGG + chr1_1:70984339-70984358 Msa0040710:intron 25.0%
! ATCAACAAATTAGATTATGG+TGG - chr1_1:70984425-70984444 None:intergenic 25.0%
! GATATATGTTAGCATGATTT+AGG + chr1_1:70984678-70984697 Msa0040710:intron 25.0%
!! ATGATTTAGGTTTATGTCAT+TGG + chr1_1:70984691-70984710 Msa0040710:intron 25.0%
! TATACAAACTCAATACATAC+CGG - chr1_1:70984772-70984791 None:intergenic 25.0%
! AGTATTTAATTCTGATCACT+TGG + chr1_1:70984822-70984841 Msa0040710:intron 25.0%
! CAATAAGAAACATGAAATAG+AGG - chr1_1:70985228-70985247 None:intergenic 25.0%
!! TTATTTTCTTCTCTTTTCCT+TGG + chr1_1:70985564-70985583 Msa0040710:three_prime_UTR 25.0%
!!! TGATTTTGGTTTGTTTTCTT+TGG + chr1_1:70985700-70985719 Msa0040710:three_prime_UTR 25.0%
!!! GATTTTGGTTTGTTTTCTTT+GGG + chr1_1:70985701-70985720 Msa0040710:three_prime_UTR 25.0%
! TTATGTAGTCTCAAAACTAT+AGG + chr1_1:70985828-70985847 Msa0040710:three_prime_UTR 25.0%
!!! GTTCATAACTTATTTTTGTG+AGG - chr1_1:70985858-70985877 None:intergenic 25.0%
! AAATAAGTTATGAACCTTAG+TGG + chr1_1:70985863-70985882 Msa0040710:three_prime_UTR 25.0%
!!! ATGTTGTGGTTGATATTTTT+TGG + chr1_1:70986206-70986225 Msa0040710:three_prime_UTR 25.0%
!! ATATAAGCATATACCTTTTG+AGG - chr1_1:70986363-70986382 None:intergenic 25.0%
! TTTCTTTCCATTACAATAAC+TGG - chr1_1:70986467-70986486 None:intergenic 25.0%
!! TTATTGTAATGGAAAGAAAC+AGG + chr1_1:70986468-70986487 Msa0040710:three_prime_UTR 25.0%
!!! ATTTTTTTTCACCGTAAATG+TGG - chr1_1:70986499-70986518 None:intergenic 25.0%
! CATTTACGGTGAAAAAAAAT+AGG + chr1_1:70986499-70986518 Msa0040710:three_prime_UTR 25.0%
!!! ATTCTATTGAGAGTATTCAT+AGG + chr1_1:70986543-70986562 Msa0040710:three_prime_UTR 25.0%
!!! TTCTATTGAGAGTATTCATA+GGG + chr1_1:70986544-70986563 Msa0040710:three_prime_UTR 25.0%
!!! TTGTGACTTTAAAATGATAC+AGG + chr1_1:70986570-70986589 Msa0040710:three_prime_UTR 25.0%
!!! ATTTATTTTTCCAGGTTATG+TGG + chr1_1:70986749-70986768 Msa0040710:three_prime_UTR 25.0%
!!! TGATTAATGACTTTAGAGTA+AGG - chr1_1:70986951-70986970 None:intergenic 25.0%
!!! TTTAAGGAATGTCGTTTTGT+GGG - chr1_1:70981419-70981438 None:intergenic 30.0%
!!! TTTTAAGGAATGTCGTTTTG+TGG - chr1_1:70981420-70981439 None:intergenic 30.0%
! GATTTTTATTCTCAGCACAT+AGG + chr1_1:70981541-70981560 Msa0040710:intron 30.0%
! TCGAAATTTGTGTTTTCAAC+AGG + chr1_1:70981846-70981865 Msa0040710:intron 30.0%
AGATTGAATTGTGAACAACA+TGG + chr1_1:70981900-70981919 Msa0040710:intron 30.0%
ATGGCATTTGTAGTATCTAA+GGG - chr1_1:70982376-70982395 None:intergenic 30.0%
AATGGCATTTGTAGTATCTA+AGG - chr1_1:70982377-70982396 None:intergenic 30.0%
! TGGCTTGATAACAAAAATGT+AGG - chr1_1:70982407-70982426 None:intergenic 30.0%
TTAATTCAAAAACCATCAGC+AGG + chr1_1:70982694-70982713 Msa0040710:intron 30.0%
TAATTCAAAAACCATCAGCA+GGG + chr1_1:70982695-70982714 Msa0040710:intron 30.0%
! TAAATGCTCACGTTATGTTT+TGG - chr1_1:70983245-70983264 None:intergenic 30.0%
!!! AACATGGGTTTTAGTTAAAG+TGG + chr1_1:70983385-70983404 Msa0040710:intron 30.0%
!!! GGTTTTAGTTAAAGTGGTAA+GGG + chr1_1:70983391-70983410 Msa0040710:intron 30.0%
! TAAAGTGGTAAGGGTATAAA+TGG + chr1_1:70983400-70983419 Msa0040710:intron 30.0%
TAAGCTATAAGCTAGTTATG+TGG + chr1_1:70983591-70983610 Msa0040710:intron 30.0%
! GACTATTTTATCAGGTTAGA+TGG - chr1_1:70983674-70983693 None:intergenic 30.0%
TTGTTAGTACTAGAAGAAGA+AGG + chr1_1:70983832-70983851 Msa0040710:CDS 30.0%
!! CATTTGCTATCATGACTTTA+TGG + chr1_1:70984028-70984047 Msa0040710:intron 30.0%
TGTTGTGAAATTGAGAGTAA+TGG + chr1_1:70984225-70984244 Msa0040710:intron 30.0%
TTATGTTAAGCGTATACTAC+TGG + chr1_1:70984547-70984566 Msa0040710:intron 30.0%
!!! TGTCTCATTCTGTTTTTGTT+AGG + chr1_1:70984950-70984969 Msa0040710:intron 30.0%
! ATTAAATTTTGCAGACCTCT+CGG - chr1_1:70985085-70985104 None:intergenic 30.0%
!!! TTTTGGAGTTATGTCAACTA+AGG - chr1_1:70985285-70985304 None:intergenic 30.0%
! AGGTAATTTTCGGCATAATT+TGG + chr1_1:70985379-70985398 Msa0040710:CDS 30.0%
!! TTTTCTGCATAATTTAGAGC+TGG + chr1_1:70985418-70985437 Msa0040710:CDS 30.0%
!!! CATAATTTAGAGCTGGTTTT+CGG + chr1_1:70985425-70985444 Msa0040710:CDS 30.0%
!! CTCTTTAGTGTAGTTGATTT+TGG + chr1_1:70985686-70985705 Msa0040710:three_prime_UTR 30.0%
AATAAGAACCAAGAGAACAT+AGG - chr1_1:70985734-70985753 None:intergenic 30.0%
GTTCATTTCAAGAGTTTATG+TGG - chr1_1:70985960-70985979 None:intergenic 30.0%
TTAAGAACCATCTTTAGTAG+TGG - chr1_1:70986053-70986072 None:intergenic 30.0%
ACAAAGAAAGTAACACTTTG+AGG - chr1_1:70986174-70986193 None:intergenic 30.0%
!!! TAGTGTGTATTTTGGTTCAT+TGG + chr1_1:70986243-70986262 Msa0040710:three_prime_UTR 30.0%
ACATTCAAGGAGAAAAATTG+TGG - chr1_1:70986290-70986309 None:intergenic 30.0%
TAAAATGATACAGGTTAGTG+AGG + chr1_1:70986579-70986598 Msa0040710:three_prime_UTR 30.0%
AAAATGATACAGGTTAGTGA+GGG + chr1_1:70986580-70986599 Msa0040710:three_prime_UTR 30.0%
! AGGGATTAGAATAGTCTTTT+TGG + chr1_1:70986599-70986618 Msa0040710:three_prime_UTR 30.0%
TTCAGTTTCGAGGTTTGATT+CGG - chr1_1:70981248-70981267 None:intergenic 35.0%
CTCGAAACTGAATGTGAAAT+CGG + chr1_1:70981256-70981275 Msa0040710:CDS 35.0%
AGTATTTGGGAGAGAAAGAA+GGG - chr1_1:70981490-70981509 None:intergenic 35.0%
TAGTATTTGGGAGAGAAAGA+AGG - chr1_1:70981491-70981510 None:intergenic 35.0%
!! TTTGTGTGTTCTAAGGTAGA+TGG + chr1_1:70981873-70981892 Msa0040710:intron 35.0%
!!! GGTGAGTTTTGTTTAATCGT+TGG + chr1_1:70981921-70981940 Msa0040710:intron 35.0%
AGCACAAAATCAAATGAGCA+TGG - chr1_1:70982014-70982033 None:intergenic 35.0%
TTAAACTGAACATACGTGCT+GGG + chr1_1:70982033-70982052 Msa0040710:CDS 35.0%
ATAATACTCTGGCAGTTCTT+TGG - chr1_1:70982238-70982257 None:intergenic 35.0%
ATCATAGAGTTGGAGTCTAA+TGG + chr1_1:70982270-70982289 Msa0040710:intron 35.0%
TCATAGAGTTGGAGTCTAAT+GGG + chr1_1:70982271-70982290 Msa0040710:intron 35.0%
CACACTTTACTTCAAATTGG+TGG - chr1_1:70982352-70982371 None:intergenic 35.0%
TGGCATTTGTAGTATCTAAG+GGG - chr1_1:70982375-70982394 None:intergenic 35.0%
TGATTAACTTAGGCTCTGTT+TGG + chr1_1:70982756-70982775 Msa0040710:intron 35.0%
GCTCTGTTTGGTAAAAATAG+CGG + chr1_1:70982768-70982787 Msa0040710:intron 35.0%
!!! GGGTTTTAGTTAAAGTGGTA+AGG + chr1_1:70983390-70983409 Msa0040710:intron 35.0%
TTACCAAACAGTGCCTTAAT+GGG + chr1_1:70983616-70983635 Msa0040710:intron 35.0%
ACCTATAAGCTTCATGAGAA+AGG + chr1_1:70983694-70983713 Msa0040710:intron 35.0%
TCCTTTCTCATGAAGCTTAT+AGG - chr1_1:70983698-70983717 None:intergenic 35.0%
TTAGTACTAGAAGAAGAAGG+AGG + chr1_1:70983835-70983854 Msa0040710:CDS 35.0%
! TTTTGCTTCTGTAACTTCAC+TGG + chr1_1:70984082-70984101 Msa0040710:intron 35.0%
TCCATAACTCAAAGTTGTAG+TGG + chr1_1:70984124-70984143 Msa0040710:intron 35.0%
GCTTAAATCTGCTTCTCTTA+TGG + chr1_1:70984190-70984209 Msa0040710:intron 35.0%
GCTTCTCTTATGGTATTACA+TGG + chr1_1:70984200-70984219 Msa0040710:intron 35.0%
! GGAATAGTTTGTGCAAGATA+TGG - chr1_1:70984625-70984644 None:intergenic 35.0%
!! TCAACTTCATACACTGGTTT+GGG - chr1_1:70984647-70984666 None:intergenic 35.0%
! TTCAACTTCATACACTGGTT+TGG - chr1_1:70984648-70984667 None:intergenic 35.0%
TGTACTTCAACTTCATACAC+TGG - chr1_1:70984653-70984672 None:intergenic 35.0%
! TGTGCTTAACTATTTAGAGC+TGG + chr1_1:70985352-70985371 Msa0040710:CDS 35.0%
! AACTATTTAGAGCTGGTTCA+AGG + chr1_1:70985359-70985378 Msa0040710:CDS 35.0%
!! AGCTGGTTCAAGGTAATTTT+CGG + chr1_1:70985369-70985388 Msa0040710:CDS 35.0%
!!! TCCTACTGCTTTTTCAGAAT+AGG + chr1_1:70985649-70985668 Msa0040710:three_prime_UTR 35.0%
! ACCTATTCTGAAAAAGCAGT+AGG - chr1_1:70985653-70985672 None:intergenic 35.0%
CAGAATAGGTTGTTGTAGTT+TGG + chr1_1:70985663-70985682 Msa0040710:three_prime_UTR 35.0%
!!! TTGGTTTGTTTTCTTTGGGA+TGG + chr1_1:70985705-70985724 Msa0040710:three_prime_UTR 35.0%
! TCTCTTGGTTCTTATTTCCT+TGG + chr1_1:70985738-70985757 Msa0040710:three_prime_UTR 35.0%
! CTCTTGGTTCTTATTTCCTT+GGG + chr1_1:70985739-70985758 Msa0040710:three_prime_UTR 35.0%
TCACAACAACTAATCCACTA+AGG - chr1_1:70985880-70985899 None:intergenic 35.0%
! GCACATTTGTCTCTAAGAAT+TGG + chr1_1:70986125-70986144 Msa0040710:three_prime_UTR 35.0%
GATATCGCATAACACATTCA+AGG - chr1_1:70986303-70986322 None:intergenic 35.0%
ATTGCAAACAGATCCTCAAA+AGG + chr1_1:70986347-70986366 Msa0040710:three_prime_UTR 35.0%
CAACGTTCCAGTTATTGTAA+TGG + chr1_1:70986457-70986476 Msa0040710:three_prime_UTR 35.0%
ACGGTGAAAAAAAATAGGGA+AGG + chr1_1:70986504-70986523 Msa0040710:three_prime_UTR 35.0%
AAGGCAATTGCTTCTTACAT+TGG - chr1_1:70986637-70986656 None:intergenic 35.0%
CGATTTCACATTCAGTTTCG+AGG - chr1_1:70981258-70981277 None:intergenic 40.0%
TTTCCACGAGGAAGATGATT+CGG + chr1_1:70981375-70981394 Msa0040710:CDS 40.0%
! AGGTGCTTTTGTGTGTTCTA+AGG + chr1_1:70981866-70981885 Msa0040710:intron 40.0%
CTTAAACTGAACATACGTGC+TGG + chr1_1:70982032-70982051 Msa0040710:CDS 40.0%
AGTTGCGACTCACTAAGAAA+AGG + chr1_1:70982102-70982121 Msa0040710:CDS 40.0%
GAAAAGGTGGGAATAAACCA+TGG + chr1_1:70982118-70982137 Msa0040710:intron 40.0%
!!! AGTTTTGGAGAGAAACACCA+TGG - chr1_1:70982138-70982157 None:intergenic 40.0%
TCTCCAAAACTTCCGTGAAA+AGG + chr1_1:70982147-70982166 Msa0040710:intron 40.0%
CAAAACTTCCGTGAAAAGGT+GGG + chr1_1:70982151-70982170 Msa0040710:intron 40.0%
! TCAGTATTCCCACCTTTTCA+CGG - chr1_1:70982162-70982181 None:intergenic 40.0%
GGGCACACTTTACTTCAAAT+TGG - chr1_1:70982355-70982374 None:intergenic 40.0%
AGTTGTACAAACTGAGCCAT+AGG + chr1_1:70982639-70982658 Msa0040710:intron 40.0%
TATATAAATGGCCCTGCTGA+TGG - chr1_1:70982709-70982728 None:intergenic 40.0%
!! CATTAAGGCACTGTTTGGTA+AGG - chr1_1:70983617-70983636 None:intergenic 40.0%
CTTACCAAACAGTGCCTTAA+TGG + chr1_1:70983615-70983634 Msa0040710:intron 40.0%
TTTCCTGCAAGTTCCCATTA+AGG - chr1_1:70983632-70983651 None:intergenic 40.0%
! AAGAAGAAGGAGGAGTTTTG+CGG + chr1_1:70983845-70983864 Msa0040710:CDS 40.0%
GTAGGAAGAGAAGGGAAAAA+AGG - chr1_1:70983916-70983935 None:intergenic 40.0%
AATCAGGAGTAGGAAGAGAA+GGG - chr1_1:70983924-70983943 None:intergenic 40.0%
TCATTGTCAGAATCAGGAGT+AGG - chr1_1:70983934-70983953 None:intergenic 40.0%
TCTTCGTCATTGTCAGAATC+AGG - chr1_1:70983940-70983959 None:intergenic 40.0%
TGACAATGACGAAGACAGTT+TGG + chr1_1:70983945-70983964 Msa0040710:intron 40.0%
TCTACACTGCAATCAGACAT+CGG - chr1_1:70984004-70984023 None:intergenic 40.0%
! GCCACTACAACTTTGAGTTA+TGG - chr1_1:70984128-70984147 None:intergenic 40.0%
AATCGAATCGTCACCGAAAT+GGG - chr1_1:70984153-70984172 None:intergenic 40.0%
AAATCGAATCGTCACCGAAA+TGG - chr1_1:70984154-70984173 None:intergenic 40.0%
GGTGGTTCAAAGATGCATAT+AGG - chr1_1:70984407-70984426 None:intergenic 40.0%
!! CAACTTCATACACTGGTTTG+GGG - chr1_1:70984646-70984665 None:intergenic 40.0%
TGGAGAAGATGACATCTTGA+AGG + chr1_1:70984711-70984730 Msa0040710:CDS 40.0%
CTTGCTGGATATCAGTATGT+TGG + chr1_1:70984742-70984761 Msa0040710:CDS 40.0%
CTGGATATCAGTATGTTGGT+GGG + chr1_1:70984746-70984765 Msa0040710:CDS 40.0%
TTCGTGAAATTGATACCGAG+AGG + chr1_1:70985067-70985086 Msa0040710:intron 40.0%
CAGAGACAAATCAGAACGTA+GGG - chr1_1:70985520-70985539 None:intergenic 40.0%
ACAGAGACAAATCAGAACGT+AGG - chr1_1:70985521-70985540 None:intergenic 40.0%
TAAAACCGATATGTTGCAGC+TGG - chr1_1:70985547-70985566 None:intergenic 40.0%
!! TCCTTGGTCTTCAAGTGTTT+TGG + chr1_1:70985580-70985599 Msa0040710:three_prime_UTR 40.0%
GATGGTTTCCTATGTTCTCT+TGG + chr1_1:70985723-70985742 Msa0040710:three_prime_UTR 40.0%
GTAGCAGTAAAAGAAACCCA+AGG - chr1_1:70985758-70985777 None:intergenic 40.0%
ACAACTTGTCAAACAGGGTA+AGG - chr1_1:70985982-70986001 None:intergenic 40.0%
TCGGAACAACTTGTCAAACA+GGG - chr1_1:70985987-70986006 None:intergenic 40.0%
TGACAAGTTGTTCCGACTTA+AGG + chr1_1:70985991-70986010 Msa0040710:three_prime_UTR 40.0%
! CAAGATCTTCTGCCACTTAA+TGG - chr1_1:70986021-70986040 None:intergenic 40.0%
CATTAAGTGGCAGAAGATCT+TGG + chr1_1:70986019-70986038 Msa0040710:three_prime_UTR 40.0%
AGGTCTTCCACTACTAAAGA+TGG + chr1_1:70986043-70986062 Msa0040710:three_prime_UTR 40.0%
GGTTCTTAATCGAGTCATCT+TGG + chr1_1:70986064-70986083 Msa0040710:three_prime_UTR 40.0%
AACAGGATCTGCCACATTTA+CGG + chr1_1:70986485-70986504 Msa0040710:three_prime_UTR 40.0%
TACTGCATAACCACATAACC+TGG - chr1_1:70986762-70986781 None:intergenic 40.0%
AACAGTTGAACCCATCAATC+TGG + chr1_1:70987021-70987040 Msa0040710:three_prime_UTR 40.0%
TTCCGATCTTCTGAACATGG+CGG + chr1_1:70981286-70981305 Msa0040710:CDS 45.0%
GAAGAAGAAGGAAGAAGCCT+TGG + chr1_1:70981331-70981350 Msa0040710:CDS 45.0%
AAGCCTTGGAGGAATTGAAG+CGG + chr1_1:70981345-70981364 Msa0040710:CDS 45.0%
!! AGGAAGATGATTCGGTGAAG+CGG + chr1_1:70981383-70981402 Msa0040710:CDS 45.0%
ACGAAAGCAGCAGATCACTA+TGG + chr1_1:70982067-70982086 Msa0040710:CDS 45.0%
CGAAAGCAGCAGATCACTAT+GGG + chr1_1:70982068-70982087 Msa0040710:CDS 45.0%
TGCGACTCACTAAGAAAAGG+TGG + chr1_1:70982105-70982124 Msa0040710:intron 45.0%
GCGACTCACTAAGAAAAGGT+GGG + chr1_1:70982106-70982125 Msa0040710:intron 45.0%
! CCACCTTTTCACGGAAGTTT+TGG - chr1_1:70982153-70982172 None:intergenic 45.0%
CCAAAACTTCCGTGAAAAGG+TGG + chr1_1:70982150-70982169 Msa0040710:intron 45.0%
!! GTTCCCATTAAGGCACTGTT+TGG - chr1_1:70983622-70983641 None:intergenic 45.0%
AGAAAAGCAGCGACTGATAG+AGG - chr1_1:70983745-70983764 None:intergenic 45.0%
ATCTTCATCGCCTACAGTTC+CGG + chr1_1:70983767-70983786 Msa0040710:CDS 45.0%
!! CCAACACCTTCTTCTAGTTC+CGG - chr1_1:70983801-70983820 None:intergenic 45.0%
!! GAACTAGAAGAAGGTGTTGG+CGG + chr1_1:70983801-70983820 Msa0040710:CDS 45.0%
! TGCGGTGGTAGTGAAAATGA+AGG + chr1_1:70983863-70983882 Msa0040710:CDS 45.0%
! GGTGGTAGTGAAAATGAAGG+TGG + chr1_1:70983866-70983885 Msa0040710:intron 45.0%
GAATCAGGAGTAGGAAGAGA+AGG - chr1_1:70983925-70983944 None:intergenic 45.0%
! GAAGATCGGAAGAAGCGTAT+GGG - chr1_1:70983982-70984001 None:intergenic 45.0%
GCAATCAGACATCGGAAGAT+CGG - chr1_1:70983996-70984015 None:intergenic 45.0%
! ATGGAGTACCTAAGCTGTAG+CGG + chr1_1:70984047-70984066 Msa0040710:intron 45.0%
AGTTAAACCCGCTACAGCTT+AGG - chr1_1:70984058-70984077 None:intergenic 45.0%
!! AACTTCACTGGCCTTGAACT+CGG + chr1_1:70984094-70984113 Msa0040710:intron 45.0%
CGATTCGATTTCGACCGTTA+AGG + chr1_1:70984163-70984182 Msa0040710:intron 45.0%
TGTGATGCTGAACTTGATGC+TGG + chr1_1:70984518-70984537 Msa0040710:intron 45.0%
GCTGGATATCAGTATGTTGG+TGG + chr1_1:70984745-70984764 Msa0040710:CDS 45.0%
! ATATCAGTATGTTGGTGGGC+CGG + chr1_1:70984750-70984769 Msa0040710:CDS 45.0%
! TTTCGGCATAATTTGGAGCG+AGG + chr1_1:70985386-70985405 Msa0040710:CDS 45.0%
!!! TAGAGCTGGTTTTCGGCATT+TGG + chr1_1:70985432-70985451 Msa0040710:CDS 45.0%
AAAAAACTCCGCTACGTAGC+AGG - chr1_1:70985494-70985513 None:intergenic 45.0%
AGACAAATCAGAACGTAGGG+AGG - chr1_1:70985517-70985536 None:intergenic 45.0%
GTGTTCCAGCTGCAACATAT+CGG + chr1_1:70985539-70985558 Msa0040710:three_prime_UTR 45.0%
GCCAAAACACTTGAAGACCA+AGG - chr1_1:70985584-70985603 None:intergenic 45.0%
GTCGGAACAACTTGTCAAAC+AGG - chr1_1:70985988-70986007 None:intergenic 45.0%
!! CTTAATGGCTGGCCTTAAGT+CGG - chr1_1:70986006-70986025 None:intergenic 45.0%
ACTTAAGGCCAGCCATTAAG+TGG + chr1_1:70986006-70986025 Msa0040710:three_prime_UTR 45.0%
! ATCTTCTGCCACTTAATGGC+TGG - chr1_1:70986017-70986036 None:intergenic 45.0%
AAGTGGCAGAAGATCTTGGA+AGG + chr1_1:70986023-70986042 Msa0040710:three_prime_UTR 45.0%
GAGCTCTTTGTTGAGACCAT+CGG - chr1_1:70986096-70986115 None:intergenic 45.0%
CTCAACAAAGAGCTCTGTGT+CGG + chr1_1:70986101-70986120 Msa0040710:three_prime_UTR 45.0%
! CTTTGAGGACCATGTATTGC+AGG - chr1_1:70986159-70986178 None:intergenic 45.0%
!! TAAATATAAAATTACATAAA+AGG + chr1_1:70982923-70982942 Msa0040710:intron 5.0%
!!! AATAATTTTTTTTTAAGAAA+AGG - chr1_1:70983281-70983300 None:intergenic 5.0%
GCCTTCCGATCTTCTGAACA+TGG + chr1_1:70981283-70981302 Msa0040710:CDS 50.0%
GCCATGTTCAGAAGATCGGA+AGG - chr1_1:70981287-70981306 None:intergenic 50.0%
CTCCGCCATGTTCAGAAGAT+CGG - chr1_1:70981291-70981310 None:intergenic 50.0%
GAAGAAGGAAGAAGCCTTGG+AGG + chr1_1:70981334-70981353 Msa0040710:CDS 50.0%
TCACCGCTTCAATTCCTCCA+AGG - chr1_1:70981351-70981370 None:intergenic 50.0%
TGGAGGAATTGAAGCGGTGA+AGG + chr1_1:70981351-70981370 Msa0040710:CDS 50.0%
TCACCGAATCATCTTCCTCG+TGG - chr1_1:70981381-70981400 None:intergenic 50.0%
ACGTTACCATGGAAGGTTGC+GGG - chr1_1:70981462-70981481 None:intergenic 50.0%
GACGTTACCATGGAAGGTTG+CGG - chr1_1:70981463-70981482 None:intergenic 50.0%
GTGCCTTAATGGGAACTTGC+AGG + chr1_1:70983626-70983645 Msa0040710:intron 50.0%
!! TTCTTCTAGTTCCGGTGAGG+TGG - chr1_1:70983793-70983812 None:intergenic 50.0%
ACCTCACCGGAACTAGAAGA+AGG + chr1_1:70983792-70983811 Msa0040710:CDS 50.0%
!! ACCTTCTTCTAGTTCCGGTG+AGG - chr1_1:70983796-70983815 None:intergenic 50.0%
! CCGGAACTAGAAGAAGGTGT+TGG + chr1_1:70983798-70983817 Msa0040710:CDS 50.0%
! AAGAAGGAGGAGTTTTGCGG+TGG + chr1_1:70983848-70983867 Msa0040710:CDS 50.0%
! GGAAGATCGGAAGAAGCGTA+TGG - chr1_1:70983983-70984002 None:intergenic 50.0%
! TGGAGTACCTAAGCTGTAGC+GGG + chr1_1:70984048-70984067 Msa0040710:intron 50.0%
GTTGTAGTGGCCACCCATTT+CGG + chr1_1:70984137-70984156 Msa0040710:intron 50.0%
TGCTGAACTTGATGCTGGCA+TGG + chr1_1:70984523-70984542 Msa0040710:intron 50.0%
TTGAAGGAGCTTGAGCTTGC+TGG + chr1_1:70984727-70984746 Msa0040710:CDS 50.0%
! CATAATTTGGAGCGAGGTCG+AGG + chr1_1:70985392-70985411 Msa0040710:CDS 50.0%
! GCAATGCAGCAGCTGTGTTT+TGG + chr1_1:70985461-70985480 Msa0040710:CDS 50.0%
!! GTCATCTTGGTAGTGACCGA+TGG + chr1_1:70986077-70986096 Msa0040710:three_prime_UTR 50.0%
GAAAGCCGACCTGCAATACA+TGG + chr1_1:70986147-70986166 Msa0040710:three_prime_UTR 50.0%
GAGGACCATGTATTGCAGGT+CGG - chr1_1:70986155-70986174 None:intergenic 50.0%
CGATCTTCTGAACATGGCGG+AGG + chr1_1:70981289-70981308 Msa0040710:CDS 55.0%
! TCTTCTGAACATGGCGGAGG+TGG + chr1_1:70981292-70981311 Msa0040710:CDS 55.0%
AGAAGCGGAGGCGAAGAAGA+AGG + chr1_1:70981319-70981338 Msa0040710:CDS 55.0%
AGCGGTGAAGGATTTCCACG+AGG + chr1_1:70981363-70981382 Msa0040710:CDS 55.0%
CGTTACCATGGAAGGTTGCG+GGG - chr1_1:70981461-70981480 None:intergenic 55.0%
GGTTGCGACGTTACCATGGA+AGG - chr1_1:70981469-70981488 None:intergenic 55.0%
GAAGGGTTGCGACGTTACCA+TGG - chr1_1:70981473-70981492 None:intergenic 55.0%
!! AGAAGAAGGTGTTGGCGGAG+AGG + chr1_1:70983806-70983825 Msa0040710:CDS 55.0%
!! TTCACTGGCCTTGAACTCGG+TGG + chr1_1:70984097-70984116 Msa0040710:intron 55.0%
TGGATCTGCCACCGAGTTCA+AGG - chr1_1:70984108-70984127 None:intergenic 55.0%
CGAATCGTCACCGAAATGGG+TGG - chr1_1:70984150-70984169 None:intergenic 55.0%
GTACTGCACCTGCTACGTAG+CGG + chr1_1:70985483-70985502 Msa0040710:CDS 55.0%
CTCTTCCCCGCAACCTTCCA+TGG + chr1_1:70981453-70981472 Msa0040710:intron 60.0%
TACAGTTCCGGCCACCTCAC+CGG + chr1_1:70983779-70983798 Msa0040710:CDS 60.0%
! TCTAGTTCCGGTGAGGTGGC+CGG - chr1_1:70983789-70983808 None:intergenic 60.0%
GGCGGAGGTGGAGACAGAAG+CGG + chr1_1:70981304-70981323 Msa0040710:CDS 65.0%
GGAGGTGGAGACAGAAGCGG+AGG + chr1_1:70981307-70981326 Msa0040710:CDS 65.0%
GGTGAGGTGGCCGGAACTGT+AGG - chr1_1:70983780-70983799 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 70981238 70987050 70981238 ID=Msa0040710;Name=Msa0040710
chr1_1 mRNA 70981238 70987050 70981238 ID=Msa0040710-mRNA-1;Parent=Msa0040710;Name=Msa0040710-mRNA-1;_AED=0.17;_eAED=0.28;_QI=0|0.25|0.4|1|1|1|5|1548|215
chr1_1 exon 70981238 70981404 70981238 ID=Msa0040710-mRNA-1:exon:23435;Parent=Msa0040710-mRNA-1
chr1_1 exon 70982004 70982123 70982004 ID=Msa0040710-mRNA-1:exon:23436;Parent=Msa0040710-mRNA-1
chr1_1 exon 70983752 70983884 70983752 ID=Msa0040710-mRNA-1:exon:23437;Parent=Msa0040710-mRNA-1
chr1_1 exon 70984700 70984771 70984700 ID=Msa0040710-mRNA-1:exon:23438;Parent=Msa0040710-mRNA-1
chr1_1 exon 70985347 70987050 70985347 ID=Msa0040710-mRNA-1:exon:23439;Parent=Msa0040710-mRNA-1
chr1_1 CDS 70981238 70981404 70981238 ID=Msa0040710-mRNA-1:cds;Parent=Msa0040710-mRNA-1
chr1_1 CDS 70982004 70982123 70982004 ID=Msa0040710-mRNA-1:cds;Parent=Msa0040710-mRNA-1
chr1_1 CDS 70983752 70983884 70983752 ID=Msa0040710-mRNA-1:cds;Parent=Msa0040710-mRNA-1
chr1_1 CDS 70984700 70984771 70984700 ID=Msa0040710-mRNA-1:cds;Parent=Msa0040710-mRNA-1
chr1_1 CDS 70985347 70985502 70985347 ID=Msa0040710-mRNA-1:cds;Parent=Msa0040710-mRNA-1
chr1_1 three_prime_UTR 70985503 70987050 70985503 ID=Msa0040710-mRNA-1:three_prime_utr;Parent=Msa0040710-mRNA-1
Gene Sequence

>Msa0040710

ATGGCAACCGAATCAAACCTCGAAACTGAATGTGAAATCGGAGAAGCCTTCCGATCTTCTGAACATGGCGGAGGTGGAGACAGAAGCGGAGGCGAAGAAGAAGGAAGAAGCCTTGGAGGAATTGAAGCGGTGAAGGATTTCCACGAGGAAGATGATTCGGTGAAGCGTTTGATTCCATGCTCATTTGATTTTGTGCTTAAACTGAACATACGTGCTGGGAGATGTTCTGAACGAAAGCAGCAGATCACTATGGGACACAAGATGAAGTTGCGACTCACTAAGAAAAGTCGCTGCTTTTCTTCATCTTCATCGCCTACAGTTCCGGCCACCTCACCGGAACTAGAAGAAGGTGTTGGCGGAGAGGAGTTTGTTAGTACTAGAAGAAGAAGGAGGAGTTTTGCGGTGGTAGTGAAAATGAAGGTTTATGTCATTGGAGAAGATGACATCTTGAAGGAGCTTGAGCTTGCTGGATATCAGTATGTTGGTGGGCCGATGTTTGTGCTTAACTATTTAGAGCTGGTTCAAGGTAATTTTCGGCATAATTTGGAGCGAGGTCGAGGCAATTTTCTGCATAATTTAGAGCTGGTTTTCGGCATTTGGACTAATGCAATGCAGCAGCTGTGTTTTGGTACTGCACCTGCTACGTAG
Protein sequence

>Msa0040710

MATESNLETECEIGEAFRSSEHGGGGDRSGGEEEGRSLGGIEAVKDFHEEDDSVKRLIPCSFDFVLKLNIRAGRCSERKQQITMGHKMKLRLTKKSRCFSSSSSPTVPATSPELEEGVGGEEFVSTRRRRRSFAVVVKMKVYVIGEDDILKELELAGYQYVGGPMFVLNYLELVQGNFRHNLERGRGNFLHNLELVFGIWTNAMQQLCFGTAPAT*