Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384240 | RHN59531.1 | 42.262 | 168 | 70 | 2 | 30 | 170 | 118 | 285 | 1.54e-29 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384240 | A0A396I402 | 42.262 | 168 | 70 | 2 | 30 | 170 | 118 | 285 | 7.35e-30 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa1384240 | 0.802959 | 4.378809e-49 | -8.615850e-47 |
| Msa0040710 | Msa1384240 | 0.814843 | 1.252930e-51 | -8.615850e-47 |
| Msa1366810 | Msa1384240 | 0.815451 | 9.184091e-52 | -8.615850e-47 |
| Msa1366970 | Msa1384240 | 0.806659 | 7.386862e-50 | -8.615850e-47 |
| Msa1384240 | Msa1402730 | 0.823306 | 1.487425e-53 | -8.615850e-47 |
| Msa1384240 | Msa1410680 | 0.821821 | 3.292749e-53 | -8.615850e-47 |
| Msa1384240 | Msa1420820 | 0.823012 | 1.741752e-53 | -8.615850e-47 |
| Msa1384240 | Msa1429150 | 0.807107 | 5.939572e-50 | -8.615850e-47 |
| Msa1384240 | Msa1458750 | 0.822859 | 1.890201e-53 | -8.615850e-47 |
| Msa0649110 | Msa1384240 | 0.824502 | 7.797601e-54 | -8.615850e-47 |
| Msa0652940 | Msa1384240 | 0.811472 | 6.882893e-51 | -8.615850e-47 |
| Msa0663800 | Msa1384240 | 0.803305 | 3.715023e-49 | -8.615850e-47 |
| Msa0748970 | Msa1384240 | 0.839119 | 1.917398e-57 | -8.615850e-47 |
| Msa0768290 | Msa1384240 | 0.820160 | 7.943057e-53 | -8.615850e-47 |
| Msa0768370 | Msa1384240 | 0.818044 | 2.406425e-52 | -8.615850e-47 |
| Msa0826320 | Msa1384240 | 0.942974 | 2.769258e-102 | -8.615850e-47 |
| Msa0834660 | Msa1384240 | 0.822558 | 2.222054e-53 | -8.615850e-47 |
| Msa0145190 | Msa1384240 | 0.801741 | 7.805198e-49 | -8.615850e-47 |
| Msa0180500 | Msa1384240 | 0.830938 | 2.215576e-55 | -8.615850e-47 |
| Msa1282580 | Msa1384240 | -0.807598 | 4.673495e-50 | -8.615850e-47 |
| Msa1299120 | Msa1384240 | 0.808685 | 2.743330e-50 | -8.615850e-47 |
| Msa0390400 | Msa1384240 | -0.805174 | 1.516072e-49 | -8.615850e-47 |
| Msa0424320 | Msa1384240 | 0.814245 | 1.699260e-51 | -8.615850e-47 |
| Msa0434000 | Msa1384240 | 0.807783 | 4.269600e-50 | -8.615850e-47 |
| Msa0989620 | Msa1384240 | 0.800705 | 1.271706e-48 | -8.615850e-47 |
| Msa1000880 | Msa1384240 | 0.811596 | 6.468426e-51 | -8.615850e-47 |
| Msa1000890 | Msa1384240 | 0.813422 | 2.580953e-51 | -8.615850e-47 |
| Msa1000900 | Msa1384240 | 0.806744 | 7.089282e-50 | -8.615850e-47 |
| Msa1014540 | Msa1384240 | 0.800772 | 1.232037e-48 | -8.615850e-47 |
| Msa1028970 | Msa1384240 | 0.802209 | 6.252940e-49 | -8.615850e-47 |
| Msa0283990 | Msa1384240 | 0.813340 | 2.689345e-51 | -8.615850e-47 |
| Msa0342750 | Msa1384240 | 0.848681 | 5.249269e-60 | -8.615850e-47 |
| Msa1113170 | Msa1384240 | 0.805027 | 1.627595e-49 | -8.615850e-47 |
| Msa1194160 | Msa1384240 | 0.803166 | 3.968127e-49 | -8.615850e-47 |
| Msa0509900 | Msa1384240 | 0.805638 | 1.212016e-49 | -8.615850e-47 |
| Msa0519000 | Msa1384240 | 0.813337 | 2.693840e-51 | -8.615850e-47 |
| Msa0523940 | Msa1384240 | 0.801957 | 7.044536e-49 | -8.615850e-47 |
| Msa0532990 | Msa1384240 | 0.802797 | 4.730993e-49 | -8.615850e-47 |
| Msa0537720 | Msa1384240 | 0.932952 | 3.928216e-95 | -8.615850e-47 |
| Msa0584860 | Msa1384240 | 0.803441 | 3.480927e-49 | -8.615850e-47 |
| Msa0585230 | Msa1384240 | 0.821959 | 3.059911e-53 | -8.615850e-47 |
| Msa0844490 | Msa1384240 | 0.832334 | 1.003249e-55 | -8.615850e-47 |
| Msa0876480 | Msa1384240 | 0.805320 | 1.412940e-49 | -8.615850e-47 |
| Msa0877250 | Msa1384240 | 0.807478 | 4.956439e-50 | -8.615850e-47 |
| Msa0888130 | Msa1384240 | 0.815176 | 1.056991e-51 | -8.615850e-47 |
| Msa0897330 | Msa1384240 | 0.804469 | 2.128056e-49 | -8.615850e-47 |
| Msa0900910 | Msa1384240 | 0.822214 | 2.670311e-53 | -8.615850e-47 |
| Msa0901070 | Msa1384240 | 0.838136 | 3.439127e-57 | -8.615850e-47 |
| Msa0927380 | Msa1384240 | 0.801685 | 8.012928e-49 | -8.615850e-47 |
| Msa0936300 | Msa1384240 | 0.820329 | 7.265788e-53 | -8.615850e-47 |
| Msa0966750 | Msa1384240 | 0.803291 | 3.739882e-49 | -8.615850e-47 |
| Msa0967280 | Msa1384240 | 0.819844 | 9.383389e-53 | -8.615850e-47 |
| Msa0973100 | Msa1384240 | 0.823549 | 1.304556e-53 | -8.615850e-47 |
| Msa0974080 | Msa1384240 | 0.841330 | 5.072054e-58 | -8.615850e-47 |
| Msa0976670 | Msa1384240 | 0.819025 | 1.442366e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384240 | MtrunA17_Chr4g0014311 | 42.262 | 168 | 70 | 2 | 30 | 170 | 118 | 285 | 1.41e-33 | 120 |
| Msa1384240 | MtrunA17_Chr8g0365271 | 46.358 | 151 | 70 | 3 | 30 | 169 | 42 | 192 | 7.76e-33 | 115 |
| Msa1384240 | MtrunA17_Chr5g0444831 | 45.695 | 151 | 71 | 3 | 30 | 169 | 30 | 180 | 2.75e-31 | 111 |
| Msa1384240 | MtrunA17_Chr7g0270411 | 45.385 | 130 | 58 | 3 | 52 | 169 | 1 | 129 | 7.18e-26 | 95.9 |
| Msa1384240 | MtrunA17_Chr3g0138341 | 68.000 | 50 | 16 | 0 | 30 | 79 | 52 | 101 | 2.42e-19 | 79.3 |
| Msa1384240 | MtrunA17_Chr2g0300061 | 47.692 | 65 | 34 | 0 | 29 | 93 | 4 | 68 | 4.01e-18 | 74.7 |
| Msa1384240 | MtrunA17_Chr1g0212881 | 38.462 | 65 | 37 | 1 | 39 | 103 | 35 | 96 | 3.93e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAAACAAATGTTGTTTA+AGG | 0.242210 | tig0020645:+111426 | Msa1384240:CDS |
| TAAACAAAACAACATATAAA+TGG | 0.265264 | tig0020645:-112130 | None:intergenic |
| TTCCCAACCACTTTGCTACT+TGG | 0.290059 | tig0020645:-111880 | None:intergenic |
| TGTGACTGTCCACAAAATTA+AGG | 0.297574 | tig0020645:+111537 | Msa1384240:CDS |
| ATGGGAACTTAAAGCATAAT+TGG | 0.316343 | tig0020645:+111461 | Msa1384240:CDS |
| TGTTTAATTGTGCAGGGAAC+CGG | 0.424669 | tig0020645:+111367 | Msa1384240:intron |
| GTTGTTTAAGGTGGAATTCA+CGG | 0.447146 | tig0020645:+111438 | Msa1384240:CDS |
| TTGCGAGTATCCAATTGATC+TGG | 0.475496 | tig0020645:+111393 | Msa1384240:CDS |
| GCGTTGATCCACATCGTCTA+AGG | 0.475507 | tig0020645:+112050 | Msa1384240:three_prime_UTR |
| TTTAATAATTGCAGTTCCGT+TGG | 0.476199 | tig0020645:+110323 | Msa1384240:intron |
| TAGAAGCTTATGCACGAAGA+AGG | 0.477597 | tig0020645:+110188 | None:intergenic |
| GAAACAAATGTTGTTTAAGG+TGG | 0.479313 | tig0020645:+111429 | Msa1384240:CDS |
| TTGACGCAATGAACTTTGAC+AGG | 0.484199 | tig0020645:-111970 | None:intergenic |
| CATTAAAACAATGATACTAC+TGG | 0.507765 | tig0020645:-112014 | None:intergenic |
| CACCAAGTAGCAAAGTGGTT+GGG | 0.514111 | tig0020645:+111878 | Msa1384240:CDS |
| CCCTCTTGAACATGCTCCAA+CGG | 0.524368 | tig0020645:-110339 | None:intergenic |
| ATTGCCATAACCAACATCTC+AGG | 0.534276 | tig0020645:-111683 | None:intergenic |
| TAGAACACTTGCAGCTAACA+AGG | 0.541533 | tig0020645:+110401 | Msa1384240:CDS |
| GTGGTTGGGAAAAGATTAGC+TGG | 0.541972 | tig0020645:+111892 | Msa1384240:CDS |
| TTTAAGGTGGAATTCACGGA+TGG | 0.557502 | tig0020645:+111442 | Msa1384240:CDS |
| TGTAGAAGCCATTACTTGAG+TGG | 0.560318 | tig0020645:+111811 | Msa1384240:intron |
| TGGAATCACCACTCAAGTAA+TGG | 0.564747 | tig0020645:-111819 | None:intergenic |
| TCATTGCGTCAAAGTTGAGA+AGG | 0.566953 | tig0020645:+111981 | Msa1384240:CDS |
| AGCATCAAACGTACATCGAA+AGG | 0.568398 | tig0020645:-112156 | None:intergenic |
| TCCGTTGGAGCATGTTCAAG+AGG | 0.576223 | tig0020645:+110338 | Msa1384240:CDS |
| AAAAGATTAGCTGGCAGCGT+GGG | 0.580966 | tig0020645:+111901 | Msa1384240:CDS |
| ACACCAAGTAGCAAAGTGGT+TGG | 0.586766 | tig0020645:+111877 | Msa1384240:CDS |
| AATTGGATACTCGCAACTAC+CGG | 0.587687 | tig0020645:-111386 | None:intergenic |
| TTAAGGTGGAATTCACGGAT+GGG | 0.591193 | tig0020645:+111443 | Msa1384240:CDS |
| AACGTGGAAGAAACTGAAGT+TGG | 0.595322 | tig0020645:+111928 | Msa1384240:CDS |
| AAAACAATCCTTAGACGATG+TGG | 0.607051 | tig0020645:-112058 | None:intergenic |
| AGCTTCTCTTGATAGCATAG+TGG | 0.608989 | tig0020645:-111486 | None:intergenic |
| CCGTTGGAGCATGTTCAAGA+GGG | 0.612238 | tig0020645:+110339 | Msa1384240:CDS |
| TGCTGACAAGATTTGCAACA+AGG | 0.629992 | tig0020645:+111637 | Msa1384240:intron |
| AAATACACCAAGTAGCAAAG+TGG | 0.642147 | tig0020645:+111873 | Msa1384240:CDS |
| TGGCAGCGTGGGTTCGAACG+TGG | 0.648721 | tig0020645:+111912 | Msa1384240:CDS |
| TAAATGGATCAATCCATACA+CGG | 0.666552 | tig0020645:-112114 | None:intergenic |
| AACTGAGAGCAAATCAAACG+AGG | 0.670294 | tig0020645:+111846 | Msa1384240:CDS |
| GAAAAGATTAGCTGGCAGCG+TGG | 0.680628 | tig0020645:+111900 | Msa1384240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAATCATAGATAGA+AGG | - | tig0020645:110544-110563 | None:intergenic | 15.0% |
| !!! | TCAAAATTATAATAATGGAA+AGG | - | tig0020645:110719-110738 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAACGTCAAATT+AGG | - | tig0020645:110908-110927 | None:intergenic | 15.0% |
| !!! | TTGTAAGCTTTAAATAATTA+TGG | + | tig0020645:111143-111162 | Msa1384240:intron | 15.0% |
| !!! | TGTAAGCTTTAAATAATTAT+GGG | + | tig0020645:111144-111163 | Msa1384240:intron | 15.0% |
| !!! | GATTTTTTGTTTTTTGTTTT+TGG | + | tig0020645:112086-112105 | Msa1384240:three_prime_UTR | 15.0% |
| !! | TAAACAAAACAACATATAAA+TGG | - | tig0020645:112133-112152 | None:intergenic | 15.0% |
| !! | TTTATATAATCATAGATAGA+AGG | - | tig0020645:110544-110563 | None:intergenic | 15.0% |
| !!! | TCAAAATTATAATAATGGAA+AGG | - | tig0020645:110719-110738 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAACGTCAAATT+AGG | - | tig0020645:110908-110927 | None:intergenic | 15.0% |
| !!! | TTGTAAGCTTTAAATAATTA+TGG | + | tig0020645:111143-111162 | Msa1384240:intron | 15.0% |
| !!! | TGTAAGCTTTAAATAATTAT+GGG | + | tig0020645:111144-111163 | Msa1384240:intron | 15.0% |
| !!! | GATTTTTTGTTTTTTGTTTT+TGG | + | tig0020645:112086-112105 | Msa1384240:three_prime_UTR | 15.0% |
| !! | TAAACAAAACAACATATAAA+TGG | - | tig0020645:112133-112152 | None:intergenic | 15.0% |
| !! | TTATATTTGCATCATATCAA+AGG | - | tig0020645:110224-110243 | None:intergenic | 20.0% |
| !! | TAACTCACTATAATTTACTT+TGG | + | tig0020645:110241-110260 | Msa1384240:intron | 20.0% |
| !! | ATATTAGAAAGAGTTAAGTT+TGG | - | tig0020645:110285-110304 | None:intergenic | 20.0% |
| !! | AAAATACACAGACATTTAAT+TGG | - | tig0020645:110494-110513 | None:intergenic | 20.0% |
| !!! | ATTTGGTTACAATCATTTTA+CGG | + | tig0020645:110873-110892 | Msa1384240:intron | 20.0% |
| !!! | AGTGATAATATACATGATTT+TGG | - | tig0020645:110968-110987 | None:intergenic | 20.0% |
| !!! | CATCTATCTTTTGATTTATT+AGG | + | tig0020645:111028-111047 | Msa1384240:intron | 20.0% |
| !!! | GTTAATGTTACTGATTTTTA+AGG | - | tig0020645:111092-111111 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTAAATTCAAATG+TGG | - | tig0020645:111318-111337 | None:intergenic | 20.0% |
| !! | TTGAATTTAGAAAACAAAGA+AGG | + | tig0020645:111321-111340 | Msa1384240:intron | 20.0% |
| !!! | GTTTGATGCTTTTATATTAA+TGG | + | tig0020645:112169-112188 | Msa1384240:three_prime_UTR | 20.0% |
| !! | AGAATAAAAAGTAGAAAACA+TGG | - | tig0020645:112197-112216 | None:intergenic | 20.0% |
| !! | TTATATTTGCATCATATCAA+AGG | - | tig0020645:110224-110243 | None:intergenic | 20.0% |
| !! | TAACTCACTATAATTTACTT+TGG | + | tig0020645:110241-110260 | Msa1384240:intron | 20.0% |
| !! | ATATTAGAAAGAGTTAAGTT+TGG | - | tig0020645:110285-110304 | None:intergenic | 20.0% |
| !! | AAAATACACAGACATTTAAT+TGG | - | tig0020645:110494-110513 | None:intergenic | 20.0% |
| !!! | ATTTGGTTACAATCATTTTA+CGG | + | tig0020645:110873-110892 | Msa1384240:intron | 20.0% |
| !!! | AGTGATAATATACATGATTT+TGG | - | tig0020645:110968-110987 | None:intergenic | 20.0% |
| !!! | CATCTATCTTTTGATTTATT+AGG | + | tig0020645:111028-111047 | Msa1384240:intron | 20.0% |
| !!! | GTTAATGTTACTGATTTTTA+AGG | - | tig0020645:111092-111111 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTAAATTCAAATG+TGG | - | tig0020645:111318-111337 | None:intergenic | 20.0% |
| !! | TTGAATTTAGAAAACAAAGA+AGG | + | tig0020645:111321-111340 | Msa1384240:intron | 20.0% |
| !!! | GTTTGATGCTTTTATATTAA+TGG | + | tig0020645:112169-112188 | Msa1384240:three_prime_UTR | 20.0% |
| !! | AGAATAAAAAGTAGAAAACA+TGG | - | tig0020645:112197-112216 | None:intergenic | 20.0% |
| ! | TATAATCATAGATAGAAGGA+TGG | - | tig0020645:110540-110559 | None:intergenic | 25.0% |
| ! | AATCAAAAGATAGATGAGTT+AGG | - | tig0020645:111024-111043 | None:intergenic | 25.0% |
| !!! | TAATTGTTGTTTAATTGTGC+AGG | + | tig0020645:111360-111379 | Msa1384240:intron | 25.0% |
| !!! | AATTGTTGTTTAATTGTGCA+GGG | + | tig0020645:111361-111380 | Msa1384240:intron | 25.0% |
| !! | TAGTTGTACAAGATTTTGTT+CGG | + | tig0020645:111560-111579 | Msa1384240:intron | 25.0% |
| !!! | CGAGGTTTTAAGTTTTTAAT+TGG | + | tig0020645:111763-111782 | Msa1384240:intron | 25.0% |
| ! | CATTAAAACAATGATACTAC+TGG | - | tig0020645:112017-112036 | None:intergenic | 25.0% |
| ! | TATAATCATAGATAGAAGGA+TGG | - | tig0020645:110540-110559 | None:intergenic | 25.0% |
| ! | AATCAAAAGATAGATGAGTT+AGG | - | tig0020645:111024-111043 | None:intergenic | 25.0% |
| !!! | TAATTGTTGTTTAATTGTGC+AGG | + | tig0020645:111360-111379 | Msa1384240:intron | 25.0% |
| !!! | AATTGTTGTTTAATTGTGCA+GGG | + | tig0020645:111361-111380 | Msa1384240:intron | 25.0% |
| !! | TAGTTGTACAAGATTTTGTT+CGG | + | tig0020645:111560-111579 | Msa1384240:intron | 25.0% |
| !!! | CGAGGTTTTAAGTTTTTAAT+TGG | + | tig0020645:111763-111782 | Msa1384240:intron | 25.0% |
| ! | CATTAAAACAATGATACTAC+TGG | - | tig0020645:112017-112036 | None:intergenic | 25.0% |
| TTTAATAATTGCAGTTCCGT+TGG | + | tig0020645:110323-110342 | Msa1384240:intron | 30.0% | |
| GCAAAACACTGATATTCAAT+TGG | - | tig0020645:110432-110451 | None:intergenic | 30.0% | |
| GATTCAATGAAGAACAATCA+GGG | - | tig0020645:110460-110479 | None:intergenic | 30.0% | |
| TGATTCAATGAAGAACAATC+AGG | - | tig0020645:110461-110480 | None:intergenic | 30.0% | |
| AAACTGATTGATGAGAAGTA+TGG | - | tig0020645:110682-110701 | None:intergenic | 30.0% | |
| !!! | TTTGTTTGTTTTAGCACCAT+TGG | + | tig0020645:110744-110763 | Msa1384240:intron | 30.0% |
| AATCTAATCTAACTCGGATA+CGG | - | tig0020645:110779-110798 | None:intergenic | 30.0% | |
| ATTCGCAATCTAATCTAACT+CGG | - | tig0020645:110785-110804 | None:intergenic | 30.0% | |
| ! | TTGATTTATTAGGTGCTACA+CGG | + | tig0020645:111038-111057 | Msa1384240:intron | 30.0% |
| !!! | ACACAATCAGGTAGTTTTAT+GGG | + | tig0020645:111267-111286 | Msa1384240:intron | 30.0% |
| AACAACAATTATTGCCACTA+TGG | - | tig0020645:111351-111370 | None:intergenic | 30.0% | |
| ACAAAAACATCCAGATCAAT+TGG | - | tig0020645:111406-111425 | None:intergenic | 30.0% | |
| !! | ATTGATCTGGATGTTTTTGT+TGG | + | tig0020645:111406-111425 | Msa1384240:CDS | 30.0% |
| !! | TTGATCTGGATGTTTTTGTT+GGG | + | tig0020645:111407-111426 | Msa1384240:CDS | 30.0% |
| ! | TGGGAAACAAATGTTGTTTA+AGG | + | tig0020645:111426-111445 | Msa1384240:CDS | 30.0% |
| ! | GAAACAAATGTTGTTTAAGG+TGG | + | tig0020645:111429-111448 | Msa1384240:CDS | 30.0% |
| ATGGGAACTTAAAGCATAAT+TGG | + | tig0020645:111461-111480 | Msa1384240:CDS | 30.0% | |
| ! | GTACAACTACCTTAATTTTG+TGG | - | tig0020645:111549-111568 | None:intergenic | 30.0% |
| GAAAACGTAACATATACTTG+TGG | - | tig0020645:111741-111760 | None:intergenic | 30.0% | |
| ! | TATATGTTACGTTTTCAACG+AGG | + | tig0020645:111745-111764 | Msa1384240:intron | 30.0% |
| TAAATGGATCAATCCATACA+CGG | - | tig0020645:112117-112136 | None:intergenic | 30.0% | |
| TTTAATAATTGCAGTTCCGT+TGG | + | tig0020645:110323-110342 | Msa1384240:intron | 30.0% | |
| GCAAAACACTGATATTCAAT+TGG | - | tig0020645:110432-110451 | None:intergenic | 30.0% | |
| GATTCAATGAAGAACAATCA+GGG | - | tig0020645:110460-110479 | None:intergenic | 30.0% | |
| TGATTCAATGAAGAACAATC+AGG | - | tig0020645:110461-110480 | None:intergenic | 30.0% | |
| AAACTGATTGATGAGAAGTA+TGG | - | tig0020645:110682-110701 | None:intergenic | 30.0% | |
| !!! | TTTGTTTGTTTTAGCACCAT+TGG | + | tig0020645:110744-110763 | Msa1384240:intron | 30.0% |
| AATCTAATCTAACTCGGATA+CGG | - | tig0020645:110779-110798 | None:intergenic | 30.0% | |
| ATTCGCAATCTAATCTAACT+CGG | - | tig0020645:110785-110804 | None:intergenic | 30.0% | |
| ! | TTGATTTATTAGGTGCTACA+CGG | + | tig0020645:111038-111057 | Msa1384240:intron | 30.0% |
| !!! | ACACAATCAGGTAGTTTTAT+GGG | + | tig0020645:111267-111286 | Msa1384240:intron | 30.0% |
| AACAACAATTATTGCCACTA+TGG | - | tig0020645:111351-111370 | None:intergenic | 30.0% | |
| ACAAAAACATCCAGATCAAT+TGG | - | tig0020645:111406-111425 | None:intergenic | 30.0% | |
| !! | ATTGATCTGGATGTTTTTGT+TGG | + | tig0020645:111406-111425 | Msa1384240:CDS | 30.0% |
| !! | TTGATCTGGATGTTTTTGTT+GGG | + | tig0020645:111407-111426 | Msa1384240:CDS | 30.0% |
| ! | TGGGAAACAAATGTTGTTTA+AGG | + | tig0020645:111426-111445 | Msa1384240:CDS | 30.0% |
| ! | GAAACAAATGTTGTTTAAGG+TGG | + | tig0020645:111429-111448 | Msa1384240:CDS | 30.0% |
| ATGGGAACTTAAAGCATAAT+TGG | + | tig0020645:111461-111480 | Msa1384240:CDS | 30.0% | |
| ! | GTACAACTACCTTAATTTTG+TGG | - | tig0020645:111549-111568 | None:intergenic | 30.0% |
| GAAAACGTAACATATACTTG+TGG | - | tig0020645:111741-111760 | None:intergenic | 30.0% | |
| ! | TATATGTTACGTTTTCAACG+AGG | + | tig0020645:111745-111764 | Msa1384240:intron | 30.0% |
| TAAATGGATCAATCCATACA+CGG | - | tig0020645:112117-112136 | None:intergenic | 30.0% | |
| TAGCACAGATGAGAATAGAT+GGG | - | tig0020645:110604-110623 | None:intergenic | 35.0% | |
| ATAGCACAGATGAGAATAGA+TGG | - | tig0020645:110605-110624 | None:intergenic | 35.0% | |
| ATCTATTCTCATCTGTGCTA+TGG | + | tig0020645:110604-110623 | Msa1384240:intron | 35.0% | |
| TATACCTGTCAAACAATGGT+AGG | - | tig0020645:110657-110676 | None:intergenic | 35.0% | |
| GGTTTATACCTGTCAAACAA+TGG | - | tig0020645:110661-110680 | None:intergenic | 35.0% | |
| ATCTAATCTAACTCGGATAC+GGG | - | tig0020645:110778-110797 | None:intergenic | 35.0% | |
| GAACTTGATGTTGAATACGT+AGG | + | tig0020645:110838-110857 | Msa1384240:intron | 35.0% | |
| ! | GTAGGTTATTGCTGCTTATT+TGG | + | tig0020645:110856-110875 | Msa1384240:intron | 35.0% |
| CAACGTTTGTTTGTATGACA+GGG | + | tig0020645:110929-110948 | Msa1384240:intron | 35.0% | |
| !! | CACACAATCAGGTAGTTTTA+TGG | + | tig0020645:111266-111285 | Msa1384240:intron | 35.0% |
| ! | GTTGTTTAAGGTGGAATTCA+CGG | + | tig0020645:111438-111457 | Msa1384240:CDS | 35.0% |
| TGTGACTGTCCACAAAATTA+AGG | + | tig0020645:111537-111556 | Msa1384240:CDS | 35.0% | |
| TTGCATATATCCTGAGATGT+TGG | + | tig0020645:111673-111692 | Msa1384240:intron | 35.0% | |
| ! | ATATCCTGAGATGTTGGTTA+TGG | + | tig0020645:111679-111698 | Msa1384240:intron | 35.0% |
| !!! | TGATTTGCTCTCAGTTTTAG+TGG | - | tig0020645:111842-111861 | None:intergenic | 35.0% |
| AAATACACCAAGTAGCAAAG+TGG | + | tig0020645:111873-111892 | Msa1384240:CDS | 35.0% | |
| AAAACAATCCTTAGACGATG+TGG | - | tig0020645:112061-112080 | None:intergenic | 35.0% | |
| TAGCACAGATGAGAATAGAT+GGG | - | tig0020645:110604-110623 | None:intergenic | 35.0% | |
| ATAGCACAGATGAGAATAGA+TGG | - | tig0020645:110605-110624 | None:intergenic | 35.0% | |
| ATCTATTCTCATCTGTGCTA+TGG | + | tig0020645:110604-110623 | Msa1384240:intron | 35.0% | |
| TATACCTGTCAAACAATGGT+AGG | - | tig0020645:110657-110676 | None:intergenic | 35.0% | |
| GGTTTATACCTGTCAAACAA+TGG | - | tig0020645:110661-110680 | None:intergenic | 35.0% | |
| ATCTAATCTAACTCGGATAC+GGG | - | tig0020645:110778-110797 | None:intergenic | 35.0% | |
| GAACTTGATGTTGAATACGT+AGG | + | tig0020645:110838-110857 | Msa1384240:intron | 35.0% | |
| ! | GTAGGTTATTGCTGCTTATT+TGG | + | tig0020645:110856-110875 | Msa1384240:intron | 35.0% |
| CAACGTTTGTTTGTATGACA+GGG | + | tig0020645:110929-110948 | Msa1384240:intron | 35.0% | |
| !! | CACACAATCAGGTAGTTTTA+TGG | + | tig0020645:111266-111285 | Msa1384240:intron | 35.0% |
| ! | GTTGTTTAAGGTGGAATTCA+CGG | + | tig0020645:111438-111457 | Msa1384240:CDS | 35.0% |
| TGTGACTGTCCACAAAATTA+AGG | + | tig0020645:111537-111556 | Msa1384240:CDS | 35.0% | |
| TTGCATATATCCTGAGATGT+TGG | + | tig0020645:111673-111692 | Msa1384240:intron | 35.0% | |
| ! | ATATCCTGAGATGTTGGTTA+TGG | + | tig0020645:111679-111698 | Msa1384240:intron | 35.0% |
| !!! | TGATTTGCTCTCAGTTTTAG+TGG | - | tig0020645:111842-111861 | None:intergenic | 35.0% |
| AAATACACCAAGTAGCAAAG+TGG | + | tig0020645:111873-111892 | Msa1384240:CDS | 35.0% | |
| AAAACAATCCTTAGACGATG+TGG | - | tig0020645:112061-112080 | None:intergenic | 35.0% | |
| TAGAACACTTGCAGCTAACA+AGG | + | tig0020645:110401-110420 | Msa1384240:CDS | 40.0% | |
| ! | TCTGTGTATTTTCCCATGCA+AGG | + | tig0020645:110502-110521 | Msa1384240:intron | 40.0% |
| AATGGTAGGACATCAATGCT+TGG | - | tig0020645:110643-110662 | None:intergenic | 40.0% | |
| ATGTCCTACCATTGTTTGAC+AGG | + | tig0020645:110650-110669 | Msa1384240:intron | 40.0% | |
| TCTAATCTAACTCGGATACG+GGG | - | tig0020645:110777-110796 | None:intergenic | 40.0% | |
| CATCAAGTACAGGACATATG+TGG | + | tig0020645:110813-110832 | Msa1384240:intron | 40.0% | |
| GCAACGTTTGTTTGTATGAC+AGG | + | tig0020645:110928-110947 | Msa1384240:intron | 40.0% | |
| TACACTTGAGTCACACAATC+AGG | + | tig0020645:111255-111274 | Msa1384240:intron | 40.0% | |
| TGTTTAATTGTGCAGGGAAC+CGG | + | tig0020645:111367-111386 | Msa1384240:intron | 40.0% | |
| AATTGGATACTCGCAACTAC+CGG | - | tig0020645:111389-111408 | None:intergenic | 40.0% | |
| TTGCGAGTATCCAATTGATC+TGG | + | tig0020645:111393-111412 | Msa1384240:CDS | 40.0% | |
| ! | TTTAAGGTGGAATTCACGGA+TGG | + | tig0020645:111442-111461 | Msa1384240:CDS | 40.0% |
| TTAAGGTGGAATTCACGGAT+GGG | + | tig0020645:111443-111462 | Msa1384240:CDS | 40.0% | |
| ! | AGCTTCTCTTGATAGCATAG+TGG | - | tig0020645:111489-111508 | None:intergenic | 40.0% |
| TGCTGACAAGATTTGCAACA+AGG | + | tig0020645:111637-111656 | Msa1384240:intron | 40.0% | |
| ATTGCCATAACCAACATCTC+AGG | - | tig0020645:111686-111705 | None:intergenic | 40.0% | |
| CGATGACAACATACATCAAG+TGG | - | tig0020645:111716-111735 | None:intergenic | 40.0% | |
| TGTAGAAGCCATTACTTGAG+TGG | + | tig0020645:111811-111830 | Msa1384240:intron | 40.0% | |
| TGGAATCACCACTCAAGTAA+TGG | - | tig0020645:111822-111841 | None:intergenic | 40.0% | |
| AACTGAGAGCAAATCAAACG+AGG | + | tig0020645:111846-111865 | Msa1384240:CDS | 40.0% | |
| AACGTGGAAGAAACTGAAGT+TGG | + | tig0020645:111928-111947 | Msa1384240:CDS | 40.0% | |
| TTGACGCAATGAACTTTGAC+AGG | - | tig0020645:111973-111992 | None:intergenic | 40.0% | |
| TCATTGCGTCAAAGTTGAGA+AGG | + | tig0020645:111981-112000 | Msa1384240:CDS | 40.0% | |
| !!! | GTTTTTGGTGTTTCCGTGTA+TGG | + | tig0020645:112101-112120 | Msa1384240:three_prime_UTR | 40.0% |
| AGCATCAAACGTACATCGAA+AGG | - | tig0020645:112159-112178 | None:intergenic | 40.0% | |
| TAGAACACTTGCAGCTAACA+AGG | + | tig0020645:110401-110420 | Msa1384240:CDS | 40.0% | |
| ! | TCTGTGTATTTTCCCATGCA+AGG | + | tig0020645:110502-110521 | Msa1384240:intron | 40.0% |
| AATGGTAGGACATCAATGCT+TGG | - | tig0020645:110643-110662 | None:intergenic | 40.0% | |
| ATGTCCTACCATTGTTTGAC+AGG | + | tig0020645:110650-110669 | Msa1384240:intron | 40.0% | |
| TCTAATCTAACTCGGATACG+GGG | - | tig0020645:110777-110796 | None:intergenic | 40.0% | |
| CATCAAGTACAGGACATATG+TGG | + | tig0020645:110813-110832 | Msa1384240:intron | 40.0% | |
| GCAACGTTTGTTTGTATGAC+AGG | + | tig0020645:110928-110947 | Msa1384240:intron | 40.0% | |
| TACACTTGAGTCACACAATC+AGG | + | tig0020645:111255-111274 | Msa1384240:intron | 40.0% | |
| TGTTTAATTGTGCAGGGAAC+CGG | + | tig0020645:111367-111386 | Msa1384240:intron | 40.0% | |
| AATTGGATACTCGCAACTAC+CGG | - | tig0020645:111389-111408 | None:intergenic | 40.0% | |
| TTGCGAGTATCCAATTGATC+TGG | + | tig0020645:111393-111412 | Msa1384240:CDS | 40.0% | |
| ! | TTTAAGGTGGAATTCACGGA+TGG | + | tig0020645:111442-111461 | Msa1384240:CDS | 40.0% |
| TTAAGGTGGAATTCACGGAT+GGG | + | tig0020645:111443-111462 | Msa1384240:CDS | 40.0% | |
| ! | AGCTTCTCTTGATAGCATAG+TGG | - | tig0020645:111489-111508 | None:intergenic | 40.0% |
| TGCTGACAAGATTTGCAACA+AGG | + | tig0020645:111637-111656 | Msa1384240:intron | 40.0% | |
| ATTGCCATAACCAACATCTC+AGG | - | tig0020645:111686-111705 | None:intergenic | 40.0% | |
| CGATGACAACATACATCAAG+TGG | - | tig0020645:111716-111735 | None:intergenic | 40.0% | |
| TGTAGAAGCCATTACTTGAG+TGG | + | tig0020645:111811-111830 | Msa1384240:intron | 40.0% | |
| TGGAATCACCACTCAAGTAA+TGG | - | tig0020645:111822-111841 | None:intergenic | 40.0% | |
| AACTGAGAGCAAATCAAACG+AGG | + | tig0020645:111846-111865 | Msa1384240:CDS | 40.0% | |
| AACGTGGAAGAAACTGAAGT+TGG | + | tig0020645:111928-111947 | Msa1384240:CDS | 40.0% | |
| TTGACGCAATGAACTTTGAC+AGG | - | tig0020645:111973-111992 | None:intergenic | 40.0% | |
| TCATTGCGTCAAAGTTGAGA+AGG | + | tig0020645:111981-112000 | Msa1384240:CDS | 40.0% | |
| !!! | GTTTTTGGTGTTTCCGTGTA+TGG | + | tig0020645:112101-112120 | Msa1384240:three_prime_UTR | 40.0% |
| AGCATCAAACGTACATCGAA+AGG | - | tig0020645:112159-112178 | None:intergenic | 40.0% | |
| ! | TGCACGAAGAAGGTTTTCGA+AGG | + | tig0020645:110198-110217 | Msa1384240:intron | 45.0% |
| ! | ATTTTCCCATGCAAGGCTGT+AGG | + | tig0020645:110509-110528 | Msa1384240:intron | 45.0% |
| TCATACCTACAGCCTTGCAT+GGG | - | tig0020645:110517-110536 | None:intergenic | 45.0% | |
| !! | ATAGATGGGCTACACATGCA+TGG | - | tig0020645:110590-110609 | None:intergenic | 45.0% |
| ATGAGTTGCGCATCAAGTAC+AGG | + | tig0020645:110803-110822 | Msa1384240:intron | 45.0% | |
| CAAGTACAGGACATATGTGG+TGG | + | tig0020645:110816-110835 | Msa1384240:intron | 45.0% | |
| !! | ACAAAGAAGGCGTTCCATAG+TGG | + | tig0020645:111334-111353 | Msa1384240:intron | 45.0% |
| ACACCAAGTAGCAAAGTGGT+TGG | + | tig0020645:111877-111896 | Msa1384240:CDS | 45.0% | |
| CACCAAGTAGCAAAGTGGTT+GGG | + | tig0020645:111878-111897 | Msa1384240:CDS | 45.0% | |
| TTCCCAACCACTTTGCTACT+TGG | - | tig0020645:111883-111902 | None:intergenic | 45.0% | |
| GTGGTTGGGAAAAGATTAGC+TGG | + | tig0020645:111892-111911 | Msa1384240:CDS | 45.0% | |
| ! | AAAAGATTAGCTGGCAGCGT+GGG | + | tig0020645:111901-111920 | Msa1384240:CDS | 45.0% |
| ! | TGCACGAAGAAGGTTTTCGA+AGG | + | tig0020645:110198-110217 | Msa1384240:intron | 45.0% |
| ! | ATTTTCCCATGCAAGGCTGT+AGG | + | tig0020645:110509-110528 | Msa1384240:intron | 45.0% |
| TCATACCTACAGCCTTGCAT+GGG | - | tig0020645:110517-110536 | None:intergenic | 45.0% | |
| !! | ATAGATGGGCTACACATGCA+TGG | - | tig0020645:110590-110609 | None:intergenic | 45.0% |
| ATGAGTTGCGCATCAAGTAC+AGG | + | tig0020645:110803-110822 | Msa1384240:intron | 45.0% | |
| CAAGTACAGGACATATGTGG+TGG | + | tig0020645:110816-110835 | Msa1384240:intron | 45.0% | |
| !! | ACAAAGAAGGCGTTCCATAG+TGG | + | tig0020645:111334-111353 | Msa1384240:intron | 45.0% |
| ACACCAAGTAGCAAAGTGGT+TGG | + | tig0020645:111877-111896 | Msa1384240:CDS | 45.0% | |
| CACCAAGTAGCAAAGTGGTT+GGG | + | tig0020645:111878-111897 | Msa1384240:CDS | 45.0% | |
| TTCCCAACCACTTTGCTACT+TGG | - | tig0020645:111883-111902 | None:intergenic | 45.0% | |
| GTGGTTGGGAAAAGATTAGC+TGG | + | tig0020645:111892-111911 | Msa1384240:CDS | 45.0% | |
| ! | AAAAGATTAGCTGGCAGCGT+GGG | + | tig0020645:111901-111920 | Msa1384240:CDS | 45.0% |
| !! | AAAAATCAAAATTATAATAA+TGG | - | tig0020645:110724-110743 | None:intergenic | 5.0% |
| !! | AAAAATCAAAATTATAATAA+TGG | - | tig0020645:110724-110743 | None:intergenic | 5.0% |
| TCCGTTGGAGCATGTTCAAG+AGG | + | tig0020645:110338-110357 | Msa1384240:CDS | 50.0% | |
| CCCTCTTGAACATGCTCCAA+CGG | - | tig0020645:110342-110361 | None:intergenic | 50.0% | |
| CCGTTGGAGCATGTTCAAGA+GGG | + | tig0020645:110339-110358 | Msa1384240:CDS | 50.0% | |
| GTCATACCTACAGCCTTGCA+TGG | - | tig0020645:110518-110537 | None:intergenic | 50.0% | |
| TCTAACTCGGATACGGGGTT+CGG | - | tig0020645:110772-110791 | None:intergenic | 50.0% | |
| CGATGAATATCAGACGCGCT+AGG | + | tig0020645:111185-111204 | Msa1384240:intron | 50.0% | |
| ! | GAAAAGATTAGCTGGCAGCG+TGG | + | tig0020645:111900-111919 | Msa1384240:CDS | 50.0% |
| ! | GCGTTGATCCACATCGTCTA+AGG | + | tig0020645:112050-112069 | Msa1384240:three_prime_UTR | 50.0% |
| TCCGTTGGAGCATGTTCAAG+AGG | + | tig0020645:110338-110357 | Msa1384240:CDS | 50.0% | |
| CCCTCTTGAACATGCTCCAA+CGG | - | tig0020645:110342-110361 | None:intergenic | 50.0% | |
| CCGTTGGAGCATGTTCAAGA+GGG | + | tig0020645:110339-110358 | Msa1384240:CDS | 50.0% | |
| GTCATACCTACAGCCTTGCA+TGG | - | tig0020645:110518-110537 | None:intergenic | 50.0% | |
| TCTAACTCGGATACGGGGTT+CGG | - | tig0020645:110772-110791 | None:intergenic | 50.0% | |
| CGATGAATATCAGACGCGCT+AGG | + | tig0020645:111185-111204 | Msa1384240:intron | 50.0% | |
| ! | GAAAAGATTAGCTGGCAGCG+TGG | + | tig0020645:111900-111919 | Msa1384240:CDS | 50.0% |
| ! | GCGTTGATCCACATCGTCTA+AGG | + | tig0020645:112050-112069 | Msa1384240:three_prime_UTR | 50.0% |
| GATACGGGGTTCGGATCCAA+TGG | - | tig0020645:110763-110782 | None:intergenic | 55.0% | |
| GATACGGGGTTCGGATCCAA+TGG | - | tig0020645:110763-110782 | None:intergenic | 55.0% | |
| TGGCAGCGTGGGTTCGAACG+TGG | + | tig0020645:111912-111931 | Msa1384240:CDS | 65.0% | |
| TGGCAGCGTGGGTTCGAACG+TGG | + | tig0020645:111912-111931 | Msa1384240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020645 | gene | 110197 | 112221 | 110197 | ID=Msa1384240;Name=Msa1384240 |
| tig0020645 | mRNA | 110197 | 112221 | 110197 | ID=Msa1384240-mRNA-1;Parent=Msa1384240;Name=Msa1384240-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.25|0.6|0.8|1|1|5|213|170 |
| tig0020645 | exon | 110197 | 110209 | 110197 | ID=Msa1384240-mRNA-1:exon:8955;Parent=Msa1384240-mRNA-1 |
| tig0020645 | exon | 110337 | 110422 | 110337 | ID=Msa1384240-mRNA-1:exon:8956;Parent=Msa1384240-mRNA-1 |
| tig0020645 | exon | 111382 | 111558 | 111382 | ID=Msa1384240-mRNA-1:exon:8957;Parent=Msa1384240-mRNA-1 |
| tig0020645 | exon | 111647 | 111690 | 111647 | ID=Msa1384240-mRNA-1:exon:8958;Parent=Msa1384240-mRNA-1 |
| tig0020645 | exon | 111816 | 112221 | 111816 | ID=Msa1384240-mRNA-1:exon:8959;Parent=Msa1384240-mRNA-1 |
| tig0020645 | CDS | 110197 | 110209 | 110197 | ID=Msa1384240-mRNA-1:cds;Parent=Msa1384240-mRNA-1 |
| tig0020645 | CDS | 110337 | 110422 | 110337 | ID=Msa1384240-mRNA-1:cds;Parent=Msa1384240-mRNA-1 |
| tig0020645 | CDS | 111382 | 111558 | 111382 | ID=Msa1384240-mRNA-1:cds;Parent=Msa1384240-mRNA-1 |
| tig0020645 | CDS | 111647 | 111690 | 111647 | ID=Msa1384240-mRNA-1:cds;Parent=Msa1384240-mRNA-1 |
| tig0020645 | CDS | 111816 | 112008 | 111816 | ID=Msa1384240-mRNA-1:cds;Parent=Msa1384240-mRNA-1 |
| tig0020645 | three_prime_UTR | 112009 | 112221 | 112009 | ID=Msa1384240-mRNA-1:three_prime_utr;Parent=Msa1384240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
