Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041730 | sp|Q9LJN4|BXL5_ARATH | 66.316 | 760 | 206 | 10 | 21 | 739 | 23 | 773 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041730 | Msa0136080 | 0.818999 | 1.462251e-52 | -8.615850e-47 |
| Msa0041730 | Msa0136110 | 0.820753 | 5.806322e-53 | -8.615850e-47 |
| Msa0041730 | Msa1344320 | 0.928590 | 2.329687e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041730 | MtrunA17_Chr1g0207281 | 92.802 | 778 | 21 | 2 | 1 | 743 | 17 | 794 | 0.0 | 1477 |
| Msa0041730 | MtrunA17_Chr2g0278761 | 52.756 | 762 | 306 | 10 | 5 | 724 | 16 | 765 | 0.0 | 781 |
| Msa0041730 | MtrunA17_Chr4g0050591 | 51.172 | 768 | 310 | 11 | 6 | 724 | 13 | 764 | 0.0 | 770 |
| Msa0041730 | MtrunA17_Chr1g0194841 | 50.792 | 758 | 325 | 8 | 3 | 724 | 2 | 747 | 0.0 | 767 |
| Msa0041730 | MtrunA17_Chr7g0269871 | 50.408 | 736 | 318 | 8 | 25 | 724 | 29 | 753 | 0.0 | 751 |
| Msa0041730 | MtrunA17_Chr2g0294751 | 49.796 | 735 | 318 | 7 | 25 | 724 | 28 | 746 | 0.0 | 734 |
| Msa0041730 | MtrunA17_Chr5g0425471 | 46.154 | 793 | 357 | 17 | 4 | 739 | 3 | 782 | 0.0 | 694 |
| Msa0041730 | MtrunA17_Chr5g0425431 | 46.842 | 760 | 347 | 15 | 24 | 739 | 34 | 780 | 0.0 | 689 |
| Msa0041730 | MtrunA17_Chr5g0425451 | 45.791 | 784 | 364 | 17 | 5 | 741 | 15 | 784 | 0.0 | 684 |
| Msa0041730 | MtrunA17_Chr3g0115601 | 47.130 | 749 | 334 | 13 | 25 | 724 | 31 | 766 | 0.0 | 681 |
| Msa0041730 | MtrunA17_Chr5g0411571 | 45.802 | 786 | 360 | 12 | 8 | 739 | 9 | 782 | 0.0 | 679 |
| Msa0041730 | MtrunA17_Chr5g0425531 | 45.489 | 798 | 358 | 18 | 4 | 739 | 3 | 785 | 0.0 | 673 |
| Msa0041730 | MtrunA17_Chr6g0461231 | 25.189 | 663 | 329 | 28 | 32 | 590 | 22 | 621 | 1.63e-28 | 121 |
| Msa0041730 | MtrunA17_Chr6g0461221 | 25.000 | 608 | 317 | 24 | 47 | 556 | 38 | 604 | 2.04e-26 | 115 |
| Msa0041730 | MtrunA17_Chr7g0253561 | 26.238 | 606 | 330 | 28 | 38 | 556 | 4 | 579 | 1.42e-25 | 112 |
| Msa0041730 | MtrunA17_Chr6g0461191 | 25.688 | 654 | 307 | 31 | 47 | 590 | 37 | 621 | 1.16e-24 | 109 |
| Msa0041730 | MtrunA17_Chr2g0292341 | 25.493 | 608 | 312 | 28 | 48 | 556 | 40 | 605 | 1.01e-22 | 103 |
| Msa0041730 | MtrunA17_Chr6g0461211 | 25.493 | 608 | 314 | 26 | 47 | 556 | 37 | 603 | 2.11e-22 | 102 |
| Msa0041730 | MtrunA17_Chr7g0253551 | 26.498 | 434 | 211 | 21 | 38 | 388 | 29 | 437 | 9.43e-17 | 84.0 |
| Msa0041730 | MtrunA17_Chr5g0429581 | 24.294 | 531 | 303 | 24 | 73 | 546 | 85 | 573 | 3.01e-15 | 79.7 |
| Msa0041730 | MtrunA17_Chr3g0104081 | 22.930 | 628 | 351 | 25 | 11 | 546 | 3 | 589 | 4.24e-15 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041730 | AT3G19620.1 | 66.316 | 760 | 206 | 10 | 21 | 739 | 23 | 773 | 0.0 | 1028 |
| Msa0041730 | AT5G64570.1 | 51.980 | 783 | 309 | 14 | 4 | 739 | 22 | 784 | 0.0 | 778 |
| Msa0041730 | AT1G02640.1 | 50.000 | 770 | 322 | 10 | 3 | 728 | 4 | 754 | 0.0 | 755 |
| Msa0041730 | AT5G09730.1 | 49.810 | 791 | 323 | 18 | 2 | 739 | 4 | 773 | 0.0 | 749 |
| Msa0041730 | AT5G49360.1 | 49.608 | 766 | 331 | 12 | 1 | 724 | 10 | 762 | 0.0 | 731 |
| Msa0041730 | AT5G10560.1 | 45.899 | 756 | 339 | 10 | 31 | 724 | 35 | 782 | 0.0 | 672 |
| Msa0041730 | AT1G78060.1 | 45.430 | 755 | 363 | 11 | 14 | 726 | 12 | 759 | 0.0 | 663 |
| Msa0041730 | AT5G64570.3 | 56.304 | 579 | 208 | 9 | 4 | 543 | 22 | 594 | 0.0 | 637 |
| Msa0041730 | AT5G64570.2 | 50.929 | 646 | 253 | 12 | 138 | 739 | 1 | 626 | 0.0 | 627 |
| Msa0041730 | AT5G09700.1 | 47.177 | 496 | 239 | 7 | 252 | 739 | 46 | 526 | 7.12e-155 | 461 |
| Msa0041730 | AT3G62710.1 | 26.194 | 607 | 327 | 30 | 45 | 589 | 101 | 648 | 1.84e-26 | 115 |
| Msa0041730 | AT5G20950.2 | 25.039 | 643 | 330 | 29 | 48 | 594 | 36 | 622 | 8.53e-24 | 107 |
| Msa0041730 | AT5G20950.1 | 25.039 | 643 | 330 | 29 | 48 | 594 | 36 | 622 | 8.53e-24 | 107 |
| Msa0041730 | AT5G20950.3 | 25.039 | 643 | 330 | 29 | 48 | 594 | 114 | 700 | 9.70e-24 | 107 |
| Msa0041730 | AT3G47010.1 | 24.104 | 614 | 359 | 25 | 32 | 564 | 5 | 592 | 2.81e-22 | 102 |
| Msa0041730 | AT3G47000.1 | 23.832 | 642 | 353 | 27 | 38 | 590 | 10 | 604 | 6.17e-22 | 101 |
| Msa0041730 | AT3G47040.4 | 23.729 | 649 | 351 | 29 | 38 | 593 | 10 | 607 | 3.28e-21 | 99.0 |
| Msa0041730 | AT5G04885.2 | 25.182 | 548 | 298 | 24 | 72 | 557 | 125 | 622 | 6.97e-21 | 98.2 |
| Msa0041730 | AT5G04885.3 | 25.182 | 548 | 298 | 24 | 72 | 557 | 108 | 605 | 9.10e-21 | 97.8 |
| Msa0041730 | AT5G04885.1 | 25.182 | 548 | 298 | 24 | 72 | 557 | 108 | 605 | 9.10e-21 | 97.8 |
| Msa0041730 | AT3G47010.2 | 23.241 | 611 | 367 | 23 | 32 | 564 | 5 | 591 | 2.80e-20 | 96.3 |
| Msa0041730 | AT5G20940.1 | 27.156 | 545 | 285 | 29 | 73 | 556 | 111 | 604 | 5.99e-20 | 95.1 |
| Msa0041730 | AT3G47000.3 | 25.909 | 440 | 213 | 18 | 38 | 388 | 10 | 425 | 3.67e-17 | 85.5 |
| Msa0041730 | AT3G47040.3 | 25.173 | 433 | 225 | 19 | 38 | 388 | 10 | 425 | 3.12e-15 | 79.3 |
| Msa0041730 | AT3G47010.4 | 25.342 | 438 | 230 | 19 | 32 | 388 | 5 | 426 | 1.03e-14 | 77.8 |
Find 168 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGCTGGTTTGACATTT+TGG | 0.130488 | 1_1:-72205892 | Msa0041730:CDS |
| CAGTAAAATAAAGTTGTTTC+TGG | 0.208407 | 1_1:-72202598 | Msa0041730:three_prime_UTR |
| GCAACATAGGAGGGATATTA+TGG | 0.220056 | 1_1:-72203968 | Msa0041730:CDS |
| TGAAACATTATGGTACAAAA+TGG | 0.221947 | 1_1:-72205957 | Msa0041730:CDS |
| CTGCTTATGATGTTGATAAT+TGG | 0.227264 | 1_1:-72205688 | Msa0041730:CDS |
| AGGGAAATTTCTACTGATAT+TGG | 0.228239 | 1_1:+72203230 | None:intergenic |
| GCCATAGCACAAGTAATATT+TGG | 0.228912 | 1_1:-72203915 | Msa0041730:CDS |
| GGGAAATCCCTCTATGAATT+TGG | 0.249033 | 1_1:-72203183 | Msa0041730:CDS |
| GTGTCATGTGCTCATATAAT+AGG | 0.254476 | 1_1:-72205387 | Msa0041730:CDS |
| GATTGTGGATACCATGTAAA+TGG | 0.264876 | 1_1:+72203294 | None:intergenic |
| TTATTACCTTAGCATCAAAA+TGG | 0.295146 | 1_1:+72205648 | None:intergenic |
| CAAAGAAGCCAAGTCTCATT+AGG | 0.298010 | 1_1:+72204531 | None:intergenic |
| TGTCAAATTCAAACAACTTA+TGG | 0.308883 | 1_1:+72203026 | None:intergenic |
| AATCCTATCAATTGTTTCAA+TGG | 0.312892 | 1_1:+72202901 | None:intergenic |
| CCTTAACTGCTGCAGCAAAA+AGG | 0.324235 | 1_1:+72204192 | None:intergenic |
| TAAAACCTGTATGTTCTTCC+AGG | 0.325928 | 1_1:+72203210 | None:intergenic |
| GCCCTTCTGCTTCTATAGAT+TGG | 0.325933 | 1_1:+72204126 | None:intergenic |
| GATAGTGAAGTGTTGCAAAA+TGG | 0.335511 | 1_1:+72206208 | None:intergenic |
| AGCCTTGAAATGCCGGTAGA+AGG | 0.350533 | 1_1:+72206115 | None:intergenic |
| GATTGGACAGCACACTATTC+TGG | 0.361517 | 1_1:-72202773 | Msa0041730:CDS |
| GTTCCATTGAAACAATTGAT+AGG | 0.364046 | 1_1:-72202904 | Msa0041730:CDS |
| CACCACATTGATATTACAAT+TGG | 0.364152 | 1_1:-72202721 | Msa0041730:CDS |
| GCAAGAGCCACTGCATCTTC+AGG | 0.368484 | 1_1:+72204787 | None:intergenic |
| GACTAAAATCAATGTTCCTT+TGG | 0.370514 | 1_1:+72204037 | None:intergenic |
| AGCTATGTACAATGTGGATT+TGG | 0.386393 | 1_1:-72205909 | Msa0041730:CDS |
| TTCTGGATCATTATAGTAGA+AGG | 0.386843 | 1_1:+72203114 | None:intergenic |
| AGAGTTAACTTGACATTGCC+TGG | 0.387425 | 1_1:-72204098 | Msa0041730:CDS |
| TTAGTGAAAGAAATATCAAT+TGG | 0.388314 | 1_1:+72203999 | None:intergenic |
| CCACTCACCACTTCTGAACT+TGG | 0.388607 | 1_1:+72202928 | None:intergenic |
| GATGCAGTGGTGTTGGTTGT+TGG | 0.395186 | 1_1:-72204155 | Msa0041730:CDS |
| TTTGCAAATGGAAGTGACTT+TGG | 0.397416 | 1_1:+72204503 | None:intergenic |
| TAACCATAACTAAGGTATAT+TGG | 0.402049 | 1_1:-72202648 | Msa0041730:three_prime_UTR |
| TTGCAAATGGAAGTGACTTT+GGG | 0.402569 | 1_1:+72204504 | None:intergenic |
| AACTCCAGGGGAAGATCCTT+TGG | 0.404077 | 1_1:-72205819 | Msa0041730:CDS |
| CATTACTATGTGGTAGTGTA+AGG | 0.406462 | 1_1:-72202554 | Msa0041730:three_prime_UTR |
| TGCTAAAGATGATAGGCTTA+AGG | 0.408182 | 1_1:-72205735 | Msa0041730:CDS |
| CTCATGTTCATGTCTGTCAT+TGG | 0.420175 | 1_1:+72203255 | None:intergenic |
| AAAGAGCACAAGTTAAGGTT+GGG | 0.420572 | 1_1:-72202876 | Msa0041730:CDS |
| ACAAGCTTCTCTTGAAATCC+AGG | 0.424917 | 1_1:+72204080 | None:intergenic |
| TCTACCGGCATTTCAAGGCT+TGG | 0.426574 | 1_1:-72206112 | Msa0041730:CDS |
| GTTTCTGGAGGTGATGAGTA+TGG | 0.432010 | 1_1:-72202583 | Msa0041730:three_prime_UTR |
| CTCTGCTGATGCAGTGGTGT+TGG | 0.432899 | 1_1:-72204162 | Msa0041730:CDS |
| ACCCTTCTACCGGCATTTCA+AGG | 0.433066 | 1_1:-72206117 | Msa0041730:CDS |
| ACTTCTGTAGTCCTTGTAAA+GGG | 0.438650 | 1_1:+72204273 | None:intergenic |
| TACTTCTGTAGTCCTTGTAA+AGG | 0.441252 | 1_1:+72204272 | None:intergenic |
| CACTAAAGAAAATCAGCAAT+TGG | 0.455452 | 1_1:-72204459 | Msa0041730:CDS |
| ATTTGAAAGAGCACAAGTTA+AGG | 0.457325 | 1_1:-72202881 | Msa0041730:CDS |
| TTTGTGTTATGTTGGAGATA+TGG | 0.460291 | 1_1:+72206349 | None:intergenic |
| AAGCAAGTGCTAAAGATGAT+AGG | 0.460961 | 1_1:-72205742 | Msa0041730:CDS |
| ACTGTGGTGGCATTTGCATT+CGG | 0.462873 | 1_1:+72204338 | None:intergenic |
| TGCTCATATAATAGGGTGAA+TGG | 0.462881 | 1_1:-72205379 | Msa0041730:CDS |
| TTGGTGTTCCTGCTTATGAA+TGG | 0.463212 | 1_1:-72206093 | Msa0041730:CDS |
| ATTACACCTTGGAGAAGGTC+TGG | 0.463689 | 1_1:+72205337 | None:intergenic |
| CTTGTAAAGGGCTTGAATAA+TGG | 0.464083 | 1_1:+72204285 | None:intergenic |
| GAAACATTATGGTACAAAAT+GGG | 0.466706 | 1_1:-72205956 | Msa0041730:CDS |
| GAAAGAGCACAAGTTAAGGT+TGG | 0.467163 | 1_1:-72202877 | Msa0041730:CDS |
| AGTGGTGTTGGTTGTTGGAT+TGG | 0.468220 | 1_1:-72204150 | Msa0041730:CDS |
| GGTAAAAGAAAGTTGGTGAT+TGG | 0.468406 | 1_1:-72202790 | Msa0041730:CDS |
| ATCTATAGAAGCAGAAGGGC+TGG | 0.468944 | 1_1:-72204123 | Msa0041730:CDS |
| TGCAGCCTCTGCTGATGCAG+TGG | 0.470889 | 1_1:-72204168 | Msa0041730:CDS |
| ATACCAATATACCTTAGTTA+TGG | 0.471463 | 1_1:+72202645 | None:intergenic |
| TGTCATGTGCTCATATAATA+GGG | 0.473992 | 1_1:-72205386 | Msa0041730:CDS |
| TGAATAATGGCATGGTATGC+CGG | 0.475387 | 1_1:+72204298 | None:intergenic |
| AATCAGTTACAGCCTTACAT+AGG | 0.476657 | 1_1:+72202529 | None:intergenic |
| CAGGGACGCGTTTCGATAGC+AGG | 0.477482 | 1_1:-72206033 | Msa0041730:CDS |
| TAGTGTAAGGGCCCTATGTA+AGG | 0.478854 | 1_1:-72202541 | Msa0041730:three_prime_UTR |
| CATTATTCAAGCCCTTTACA+AGG | 0.483200 | 1_1:-72204284 | Msa0041730:CDS |
| TCCCTCTATGAATTTGGCTA+TGG | 0.484680 | 1_1:-72203177 | Msa0041730:CDS |
| TGACACTAAGTCCTTGGCTC+TGG | 0.485207 | 1_1:+72206177 | None:intergenic |
| TCACTTCCATTTGCAAACCT+TGG | 0.486006 | 1_1:-72204497 | Msa0041730:CDS |
| ATTTCCCTGGAAGAACATAC+AGG | 0.486697 | 1_1:-72203215 | Msa0041730:CDS |
| AACACCAAGCCTTGAAATGC+CGG | 0.491966 | 1_1:+72206108 | None:intergenic |
| TATGCTGTAAATTATGTTCG+TGG | 0.495123 | 1_1:-72205785 | Msa0041730:CDS |
| CAACATAGGAGGGATATTAT+GGG | 0.496768 | 1_1:-72203967 | Msa0041730:CDS |
| ATTGTGGATACCATGTAAAT+GGG | 0.498218 | 1_1:+72203295 | None:intergenic |
| TCCAAATATTACTTGTGCTA+TGG | 0.501814 | 1_1:+72203914 | None:intergenic |
| ACTACAGAAGTACATTTCTT+CGG | 0.503346 | 1_1:-72204261 | Msa0041730:CDS |
| TAGTGAAAGAAATATCAATT+GGG | 0.504026 | 1_1:+72204000 | None:intergenic |
| ATGTACAATGTGGATTTGGC+TGG | 0.507340 | 1_1:-72205905 | Msa0041730:CDS |
| GATGGTCCAAGGTTTGCAAA+TGG | 0.509359 | 1_1:+72204491 | None:intergenic |
| GCCTTGAAATGCCGGTAGAA+GGG | 0.510160 | 1_1:+72206116 | None:intergenic |
| AGAAGTTATAACCATAACTA+AGG | 0.511109 | 1_1:-72202656 | Msa0041730:three_prime_UTR |
| ATATTATGGGTAGGTTATCC+TGG | 0.512772 | 1_1:-72203954 | Msa0041730:CDS |
| ATATTTGGAGACTATAACCC+AGG | 0.518089 | 1_1:-72203900 | Msa0041730:intron |
| CTGCTATCGAAACGCGTCCC+TGG | 0.518333 | 1_1:+72206034 | None:intergenic |
| ACTAAAAGTATAAGCAACAT+AGG | 0.518647 | 1_1:-72203981 | Msa0041730:CDS |
| TCTTTAGTGCATACATCAGA+TGG | 0.520982 | 1_1:+72204473 | None:intergenic |
| TGGTGGTCAGAGGCACTTCA+TGG | 0.521560 | 1_1:-72206073 | Msa0041730:CDS |
| CGTTTCGATAGCAGGGTACC+TGG | 0.524275 | 1_1:-72206025 | Msa0041730:CDS |
| TCAAGGAAGATATTATTAAG+TGG | 0.524739 | 1_1:+72203072 | None:intergenic |
| TATCAATTGCTTGATCATCA+AGG | 0.526561 | 1_1:+72203055 | None:intergenic |
| GTGGCTCTTGCACTGAAAGC+AGG | 0.529634 | 1_1:-72204775 | Msa0041730:intron |
| ATCAGTTACAGCCTTACATA+GGG | 0.538855 | 1_1:+72202530 | None:intergenic |
| CTTCATGGTGTCTCAAATGT+AGG | 0.539417 | 1_1:-72206058 | Msa0041730:CDS |
| AATATCAGTAGAAATTTCCC+TGG | 0.539925 | 1_1:-72203228 | Msa0041730:CDS |
| GGGCGTGGACAAGAAACTCC+AGG | 0.541036 | 1_1:-72205833 | Msa0041730:CDS |
| GTTCGTGGACTACAAGAAGT+TGG | 0.541602 | 1_1:-72205770 | Msa0041730:CDS |
| AAAAGTATAAGCAACATAGG+AGG | 0.545184 | 1_1:-72203978 | Msa0041730:CDS |
| AGAAGGAGCAGATGCTATGT+GGG | 0.551576 | 1_1:+72203131 | None:intergenic |
| ACCACATGAGATCCATCAAA+AGG | 0.551827 | 1_1:+72202970 | None:intergenic |
| ATAATTGGAAAGGCGTTGAT+CGG | 0.552315 | 1_1:-72205673 | Msa0041730:CDS |
| GGACAGCACACTATTCTGGT+TGG | 0.552636 | 1_1:-72202769 | Msa0041730:CDS |
| ATCCATAGCCAAATTCATAG+AGG | 0.557580 | 1_1:+72203175 | None:intergenic |
| TAAGCGTGACACTAAGTCCT+TGG | 0.559465 | 1_1:+72206171 | None:intergenic |
| CTCTGATTACACCTTGGAGA+AGG | 0.562519 | 1_1:+72205332 | None:intergenic |
| ATCTATTGTAGACCAAGCCT+TGG | 0.563804 | 1_1:-72204570 | Msa0041730:CDS |
| GCAGCTGATAGTATCACTGC+TGG | 0.566392 | 1_1:+72205989 | None:intergenic |
| TAAAATAAAGTTGTTTCTGG+AGG | 0.569057 | 1_1:-72202595 | Msa0041730:three_prime_UTR |
| AAAACCTGTATGTTCTTCCA+GGG | 0.569628 | 1_1:+72203211 | None:intergenic |
| CTCACCACTTCTGAACTTGG+TGG | 0.569744 | 1_1:+72202931 | None:intergenic |
| TCTGACCACCATTCATAAGC+AGG | 0.570631 | 1_1:+72206085 | None:intergenic |
| TGTTTCAGACTGTGATTCAG+TGG | 0.570986 | 1_1:-72204845 | Msa0041730:intron |
| GCTCTAGAAGCTGCGAAGCA+AGG | 0.571329 | 1_1:-72204437 | Msa0041730:CDS |
| GGTGTCTCAAATGTAGGACC+AGG | 0.572126 | 1_1:-72206052 | Msa0041730:CDS |
| GTGTTCCTGCTTATGAATGG+TGG | 0.572399 | 1_1:-72206090 | Msa0041730:CDS |
| TGCATACATCAGATGGTCCA+AGG | 0.572554 | 1_1:+72204480 | None:intergenic |
| GTAGGTTATCCTGGTCAAGA+TGG | 0.574821 | 1_1:-72203945 | Msa0041730:CDS |
| TACATAGTCCTAATGAGACT+TGG | 0.576502 | 1_1:-72204539 | Msa0041730:CDS |
| TAGAAGGAGCAGATGCTATG+TGG | 0.577310 | 1_1:+72203130 | None:intergenic |
| TCCATAGCCAAATTCATAGA+GGG | 0.577492 | 1_1:+72203176 | None:intergenic |
| GGAGCCACCAAGTTCAGAAG+TGG | 0.580834 | 1_1:-72202935 | Msa0041730:CDS |
| CAAATTCAAACAACTTATGG+TGG | 0.582768 | 1_1:+72203029 | None:intergenic |
| GTTATGATTAGTAACTATGC+CGG | 0.583450 | 1_1:-72204317 | Msa0041730:CDS |
| TGTAGTTGTATACCAAGGCT+TGG | 0.586966 | 1_1:+72204558 | None:intergenic |
| GCATTTCCTCCATCTTGACC+AGG | 0.588584 | 1_1:+72203936 | None:intergenic |
| ATTACTATGTGGTAGTGTAA+GGG | 0.592903 | 1_1:-72202553 | Msa0041730:three_prime_UTR |
| GTGGTAGGTCCCCATTTACA+TGG | 0.594929 | 1_1:-72203305 | Msa0041730:CDS |
| CAACTAGTAAACCCTTCTAC+CGG | 0.596049 | 1_1:-72206127 | Msa0041730:CDS |
| ACAACCAAAGGATCTTCCCC+TGG | 0.596108 | 1_1:+72205815 | None:intergenic |
| TAGTGATGGTAAAAGAAAGT+TGG | 0.596133 | 1_1:-72202797 | Msa0041730:CDS |
| GGCGTGGACAAGAAACTCCA+GGG | 0.596923 | 1_1:-72205832 | Msa0041730:CDS |
| AAAGTATAAGCAACATAGGA+GGG | 0.598306 | 1_1:-72203977 | Msa0041730:CDS |
| GACCAATCTATAGAAGCAGA+AGG | 0.600841 | 1_1:-72204128 | Msa0041730:CDS |
| TGCTATGTGGGTAGAGAATG+TGG | 0.601022 | 1_1:+72203143 | None:intergenic |
| CTAAGTAATGTTGATAGTGA+TGG | 0.602583 | 1_1:-72202811 | Msa0041730:CDS |
| TGCTTATGAATGGTGGTCAG+AGG | 0.605760 | 1_1:-72206083 | Msa0041730:CDS |
| ATCTTATGAAACCAGAGCCA+AGG | 0.606136 | 1_1:-72206188 | Msa0041730:CDS |
| TATGATGTTGATAATTGGAA+AGG | 0.616039 | 1_1:-72205683 | Msa0041730:CDS |
| AGGTCTGGATCAGCACATGT+AGG | 0.621412 | 1_1:+72205352 | None:intergenic |
| AAAGACTCCTGAAGATGCAG+TGG | 0.622680 | 1_1:-72204794 | Msa0041730:CDS |
| GTGATTGGTGTGAAGAACAA+TGG | 0.624345 | 1_1:-72202994 | Msa0041730:CDS |
| GGTTATCCTGGTCAAGATGG+AGG | 0.630089 | 1_1:-72203942 | Msa0041730:CDS |
| AGAGAAGCTTGTGAAAGATG+CGG | 0.633713 | 1_1:-72204069 | Msa0041730:CDS |
| GTTACTAATCATAACTGTGG+TGG | 0.637990 | 1_1:+72204325 | None:intergenic |
| AAAGGGCTTGAATAATGGCA+TGG | 0.638979 | 1_1:+72204290 | None:intergenic |
| CATTGATATTACAATTGGAG+AGG | 0.641938 | 1_1:-72202716 | Msa0041730:CDS |
| TCTTCGGTAACTTACGCGCG+TGG | 0.642928 | 1_1:-72204245 | Msa0041730:CDS |
| GATGCGGCTTCTGCTACCAA+AGG | 0.645797 | 1_1:-72204053 | Msa0041730:CDS |
| CAACACCACTGCATCAGCAG+AGG | 0.646395 | 1_1:+72204163 | None:intergenic |
| ACTTGATCGACATATGATTG+TGG | 0.652204 | 1_1:+72203279 | None:intergenic |
| GACTATGTAGTTGTATACCA+AGG | 0.652901 | 1_1:+72204553 | None:intergenic |
| GCTGGAAAGCTAGTAGCACC+AGG | 0.654050 | 1_1:+72206007 | None:intergenic |
| GCTGATCCAGACCTTCTCCA+AGG | 0.658385 | 1_1:-72205343 | Msa0041730:intron |
| ATAGGAGGGATATTATGGGT+AGG | 0.660257 | 1_1:-72203963 | Msa0041730:CDS |
| ACCAATCTATAGAAGCAGAA+GGG | 0.660435 | 1_1:-72204127 | Msa0041730:CDS |
| CCAAGTTCAGAAGTGGTGAG+TGG | 0.668174 | 1_1:-72202928 | Msa0041730:CDS |
| AGCTAGAGCTATGTACAATG+TGG | 0.670531 | 1_1:-72205915 | Msa0041730:CDS |
| TACATGATAACAGTAGCTAG+TGG | 0.672904 | 1_1:+72202622 | None:intergenic |
| CTCCAATTGTAATATCAATG+TGG | 0.675550 | 1_1:+72202719 | None:intergenic |
| ATAGTTACTAATCATAACTG+TGG | 0.678359 | 1_1:+72204322 | None:intergenic |
| TCTGGAGGTGATGAGTATGG+TGG | 0.684795 | 1_1:-72202580 | Msa0041730:three_prime_UTR |
| AGGGACGCGTTTCGATAGCA+GGG | 0.694015 | 1_1:-72206032 | Msa0041730:CDS |
| GCATATCTAGAAACAACCAA+AGG | 0.695865 | 1_1:+72205803 | None:intergenic |
| ATGGTGGTAACATTACTATG+TGG | 0.697084 | 1_1:-72202564 | Msa0041730:three_prime_UTR |
| GCGTGGACAAGAAACTCCAG+GGG | 0.698903 | 1_1:-72205831 | Msa0041730:CDS |
| GTGTCTCAAATGTAGGACCA+GGG | 0.699223 | 1_1:-72206051 | Msa0041730:CDS |
| TTGTGGATACCATGTAAATG+GGG | 0.746412 | 1_1:+72203296 | None:intergenic |
| GCAGGTTTAAACATGAACTG+CGG | 0.750864 | 1_1:-72204647 | Msa0041730:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTAAGATAAAAAATT+TGG | - | chr1_1:72204455-72204474 | Msa0041730:CDS | 10.0% |
| !!! | TTTATCTTAGTTTTTGATAA+AGG | + | chr1_1:72204450-72204469 | None:intergenic | 15.0% |
| !! | AAATATGTAAAGATAAATGT+AGG | + | chr1_1:72204981-72205000 | None:intergenic | 15.0% |
| !!! | GCTATTATAAATTGATAATT+AGG | + | chr1_1:72205203-72205222 | None:intergenic | 15.0% |
| !! | AAAATAAAAGTTTATGTGTT+TGG | + | chr1_1:72205422-72205441 | None:intergenic | 15.0% |
| !!! | ACAGTGAAAATTTTATTTAT+AGG | - | chr1_1:72205500-72205519 | Msa0041730:intron | 15.0% |
| !!! | CTAGTTTTAATGAAACATTA+TGG | - | chr1_1:72202860-72202879 | Msa0041730:CDS | 20.0% |
| !! | GTAAAAATATTTAACACGTT+CGG | + | chr1_1:72203295-72203314 | None:intergenic | 20.0% |
| !! | AAAAATCAAATGATTGCTTA+GGG | + | chr1_1:72203552-72203571 | None:intergenic | 20.0% |
| !! | AAAAAATCAAATGATTGCTT+AGG | + | chr1_1:72203553-72203572 | None:intergenic | 20.0% |
| !! | TCAACTAAATCCTATATTTA+GGG | + | chr1_1:72203663-72203682 | None:intergenic | 20.0% |
| !! | TTGACTAAATTACTAGAATT+TGG | - | chr1_1:72203679-72203698 | Msa0041730:intron | 20.0% |
| !!! | AATTAGTAGTATTGTTTTAC+AGG | - | chr1_1:72203734-72203753 | Msa0041730:intron | 20.0% |
| !! | TCTATCATAGTATTTATTAC+AGG | - | chr1_1:72203777-72203796 | Msa0041730:intron | 20.0% |
| !!! | CAAAAAAGTATAAGATATCA+GGG | + | chr1_1:72203951-72203970 | None:intergenic | 20.0% |
| !!! | TCAAAAAAGTATAAGATATC+AGG | + | chr1_1:72203952-72203971 | None:intergenic | 20.0% |
| !! | TATTGGATTATTAAATGGTA+TGG | - | chr1_1:72204144-72204163 | Msa0041730:CDS | 20.0% |
| !!! | AACATTGATTTTAGTCATAA+TGG | - | chr1_1:72204797-72204816 | Msa0041730:CDS | 20.0% |
| !! | TAGTGAAAGAAATATCAATT+GGG | + | chr1_1:72204830-72204849 | None:intergenic | 20.0% |
| !! | TTAGTGAAAGAAATATCAAT+TGG | + | chr1_1:72204831-72204850 | None:intergenic | 20.0% |
| !!! | AATGTTTTTTTAACTGTCAT+AGG | + | chr1_1:72205009-72205028 | None:intergenic | 20.0% |
| !! | TTGATTCATAAAAATCAGTT+TGG | - | chr1_1:72205236-72205255 | Msa0041730:intron | 20.0% |
| !!! | GTGAAAATTTTATTTATAGG+TGG | - | chr1_1:72205503-72205522 | Msa0041730:intron | 20.0% |
| !!! | AAATTTTATTTATAGGTGGT+AGG | - | chr1_1:72205507-72205526 | Msa0041730:intron | 20.0% |
| !!! | ATTATTAAGTGGTTTTGAAA+TGG | + | chr1_1:72205747-72205766 | None:intergenic | 20.0% |
| !!! | TTACAAGTTTTGTGTTATGT+TGG | + | chr1_1:72202489-72202508 | None:intergenic | 25.0% |
| ! | TGAAACATTATGGTACAAAA+TGG | - | chr1_1:72202870-72202889 | Msa0041730:CDS | 25.0% |
| ! | GAAACATTATGGTACAAAAT+GGG | - | chr1_1:72202871-72202890 | Msa0041730:CDS | 25.0% |
| !!! | TATGATGTTGATAATTGGAA+AGG | - | chr1_1:72203144-72203163 | Msa0041730:CDS | 25.0% |
| ! | TTATTACCTTAGCATCAAAA+TGG | + | chr1_1:72203182-72203201 | None:intergenic | 25.0% |
| ! | TATCACCATGTAGATATTTA+CGG | - | chr1_1:72203332-72203351 | Msa0041730:intron | 25.0% |
| ! | TAGTTTATCATAGCTATCAT+AGG | + | chr1_1:72203626-72203645 | None:intergenic | 25.0% |
| ! | GTCAACTAAATCCTATATTT+AGG | + | chr1_1:72203664-72203683 | None:intergenic | 25.0% |
| ! | ATTACTAGAATTTGGAAAGT+TGG | - | chr1_1:72203687-72203706 | Msa0041730:intron | 25.0% |
| ! | TTTATTACAGGTTGTAGAAA+AGG | - | chr1_1:72203789-72203808 | Msa0041730:intron | 25.0% |
| ! | ACTGCAAAAAAAATTCTGAT+TGG | - | chr1_1:72204099-72204118 | Msa0041730:CDS | 25.0% |
| ! | CTGCAAAAAAAATTCTGATT+GGG | - | chr1_1:72204100-72204119 | Msa0041730:CDS | 25.0% |
| ! | AATAAAGTTATGACTGGTAT+TGG | - | chr1_1:72204127-72204146 | Msa0041730:CDS | 25.0% |
| !! | ACTGGTATTGGATTATTAAA+TGG | - | chr1_1:72204139-72204158 | Msa0041730:CDS | 25.0% |
| ! | ATAAAAAATTTGGCTGTGAT+TGG | - | chr1_1:72204465-72204484 | Msa0041730:CDS | 25.0% |
| ! | ATAGTTACTAATCATAACTG+TGG | + | chr1_1:72204508-72204527 | None:intergenic | 25.0% |
| !! | ACTAAAAGTATAAGCAACAT+AGG | - | chr1_1:72204846-72204865 | Msa0041730:intron | 25.0% |
| ! | TTTAATAGAAAGCTATACCT+GGG | + | chr1_1:72204947-72204966 | None:intergenic | 25.0% |
| !!! | TACAATTCGGTTTTATGTAA+AGG | - | chr1_1:72205269-72205288 | Msa0041730:intron | 25.0% |
| !! | TGTTTATATTTGAGACCATA+AGG | + | chr1_1:72205368-72205387 | None:intergenic | 25.0% |
| ! | TTATGTGTTTGGTATAAACT+TGG | + | chr1_1:72205411-72205430 | None:intergenic | 25.0% |
| ! | TCAAGGAAGATATTATTAAG+TGG | + | chr1_1:72205758-72205777 | None:intergenic | 25.0% |
| ! | TGTCAAATTCAAACAACTTA+TGG | + | chr1_1:72205804-72205823 | None:intergenic | 25.0% |
| ! | AATCCTATCAATTGTTTCAA+TGG | + | chr1_1:72205929-72205948 | None:intergenic | 25.0% |
| ! | AGAAGTTATAACCATAACTA+AGG | - | chr1_1:72206171-72206190 | Msa0041730:CDS | 25.0% |
| ! | TAACCATAACTAAGGTATAT+TGG | - | chr1_1:72206179-72206198 | Msa0041730:CDS | 25.0% |
| ! | ATACCAATATACCTTAGTTA+TGG | + | chr1_1:72206185-72206204 | None:intergenic | 25.0% |
| !! | CAGTAAAATAAAGTTGTTTC+TGG | - | chr1_1:72206229-72206248 | Msa0041730:CDS | 25.0% |
| !!! | TAAAATAAAGTTGTTTCTGG+AGG | - | chr1_1:72206232-72206251 | Msa0041730:CDS | 25.0% |
| TTTGTGTTATGTTGGAGATA+TGG | + | chr1_1:72202481-72202500 | None:intergenic | 30.0% | |
| !! | GCATGTTTTTGACTAGTAAT+TGG | + | chr1_1:72202565-72202584 | None:intergenic | 30.0% |
| !!! | AATGGAAAGTTGCTAGTTTT+AGG | + | chr1_1:72202604-72202623 | None:intergenic | 30.0% |
| TATGCTGTAAATTATGTTCG+TGG | - | chr1_1:72203042-72203061 | Msa0041730:CDS | 30.0% | |
| !! | CTGCTTATGATGTTGATAAT+TGG | - | chr1_1:72203139-72203158 | Msa0041730:CDS | 30.0% |
| TGGCAGCATATTAAATTTCA+TGG | + | chr1_1:72203221-72203240 | None:intergenic | 30.0% | |
| ! | TCCAATTGCTTATGCATTTT+TGG | + | chr1_1:72203241-72203260 | None:intergenic | 30.0% |
| TCTACATGGTGATATATGAT+TGG | + | chr1_1:72203326-72203345 | None:intergenic | 30.0% | |
| AATCTCCGTAAATATCTACA+TGG | + | chr1_1:72203340-72203359 | None:intergenic | 30.0% | |
| TGTCATGTGCTCATATAATA+GGG | - | chr1_1:72203441-72203460 | Msa0041730:intron | 30.0% | |
| ! | TTAAGTTAGCTTGACATGTA+AGG | + | chr1_1:72203577-72203596 | None:intergenic | 30.0% |
| CATAGCTATCATAGGTATAA+AGG | + | chr1_1:72203618-72203637 | None:intergenic | 30.0% | |
| CTATCTTAGTCCCTAAATAT+AGG | - | chr1_1:72203650-72203669 | Msa0041730:intron | 30.0% | |
| ACGCAGTTGAAAATTTGAAA+CGG | - | chr1_1:72203853-72203872 | Msa0041730:intron | 30.0% | |
| TGAAACGGTGTCTTATAAAA+AGG | - | chr1_1:72203868-72203887 | Msa0041730:intron | 30.0% | |
| GAAACGGTGTCTTATAAAAA+GGG | - | chr1_1:72203869-72203888 | Msa0041730:intron | 30.0% | |
| GTGTCTTATAAAAAGGGATA+AGG | - | chr1_1:72203875-72203894 | Msa0041730:intron | 30.0% | |
| GGAAGAAATAAAGTTATGAC+TGG | - | chr1_1:72204121-72204140 | Msa0041730:CDS | 30.0% | |
| CACTAAAGAAAATCAGCAAT+TGG | - | chr1_1:72204368-72204387 | Msa0041730:CDS | 30.0% | |
| ! | GTTTTGCTTGAAAACAACAA+AGG | - | chr1_1:72204417-72204436 | Msa0041730:CDS | 30.0% |
| GTTATGATTAGTAACTATGC+CGG | - | chr1_1:72204510-72204529 | Msa0041730:CDS | 30.0% | |
| ! | ACTACAGAAGTACATTTCTT+CGG | - | chr1_1:72204566-72204585 | Msa0041730:CDS | 30.0% |
| GACTAAAATCAATGTTCCTT+TGG | + | chr1_1:72204793-72204812 | None:intergenic | 30.0% | |
| ! | AAAAGTATAAGCAACATAGG+AGG | - | chr1_1:72204849-72204868 | Msa0041730:intron | 30.0% |
| AAAGTATAAGCAACATAGGA+GGG | - | chr1_1:72204850-72204869 | Msa0041730:intron | 30.0% | |
| TCCAAATATTACTTGTGCTA+TGG | + | chr1_1:72204916-72204935 | None:intergenic | 30.0% | |
| GTTTAATAGAAAGCTATACC+TGG | + | chr1_1:72204948-72204967 | None:intergenic | 30.0% | |
| AAAAATCAAACGATGACGAA+TGG | + | chr1_1:72205128-72205147 | None:intergenic | 30.0% | |
| AACAACTCTAACATTCGATT+TGG | - | chr1_1:72205150-72205169 | Msa0041730:intron | 30.0% | |
| TGGTTCGAAAAACTACAATT+CGG | - | chr1_1:72205256-72205275 | Msa0041730:intron | 30.0% | |
| !! | GGTTTTATGTAAAGGTAGTT+CGG | - | chr1_1:72205277-72205296 | Msa0041730:intron | 30.0% |
| TAATGTTACCACATACCTTA+TGG | - | chr1_1:72205350-72205369 | Msa0041730:CDS | 30.0% | |
| ! | TTATATTTGAGACTTGAGAC+CGG | - | chr1_1:72205444-72205463 | Msa0041730:intron | 30.0% |
| ! | AATTTTCACTGTTAGTCCAA+AGG | + | chr1_1:72205492-72205511 | None:intergenic | 30.0% |
| ATTGTGGATACCATGTAAAT+GGG | + | chr1_1:72205535-72205554 | None:intergenic | 30.0% | |
| AGGGAAATTTCTACTGATAT+TGG | + | chr1_1:72205600-72205619 | None:intergenic | 30.0% | |
| AATATCAGTAGAAATTTCCC+TGG | - | chr1_1:72205599-72205618 | Msa0041730:intron | 30.0% | |
| ! | AGAACATACAGGTTTTACAA+TGG | - | chr1_1:72205623-72205642 | Msa0041730:intron | 30.0% |
| ! | GAACATACAGGTTTTACAAT+GGG | - | chr1_1:72205624-72205643 | Msa0041730:intron | 30.0% |
| TTCTGGATCATTATAGTAGA+AGG | + | chr1_1:72205716-72205735 | None:intergenic | 30.0% | |
| ! | TTGAAATGGATGTGTTTTTC+TGG | + | chr1_1:72205733-72205752 | None:intergenic | 30.0% |
| TATCAATTGCTTGATCATCA+AGG | + | chr1_1:72205775-72205794 | None:intergenic | 30.0% | |
| CAAATTCAAACAACTTATGG+TGG | + | chr1_1:72205801-72205820 | None:intergenic | 30.0% | |
| GTTCCATTGAAACAATTGAT+AGG | - | chr1_1:72205923-72205942 | Msa0041730:CDS | 30.0% | |
| ! | ATTTGAAAGAGCACAAGTTA+AGG | - | chr1_1:72205946-72205965 | Msa0041730:CDS | 30.0% |
| !! | CTAAGTAATGTTGATAGTGA+TGG | - | chr1_1:72206016-72206035 | Msa0041730:CDS | 30.0% |
| TAGTGATGGTAAAAGAAAGT+TGG | - | chr1_1:72206030-72206049 | Msa0041730:CDS | 30.0% | |
| CACCACATTGATATTACAAT+TGG | - | chr1_1:72206106-72206125 | Msa0041730:CDS | 30.0% | |
| CTCCAATTGTAATATCAATG+TGG | + | chr1_1:72206111-72206130 | None:intergenic | 30.0% | |
| CATTGATATTACAATTGGAG+AGG | - | chr1_1:72206111-72206130 | Msa0041730:CDS | 30.0% | |
| ! | ATTACTATGTGGTAGTGTAA+GGG | - | chr1_1:72206274-72206293 | Msa0041730:CDS | 30.0% |
| CAAAAACATGCATGTGACAA+AGG | - | chr1_1:72202574-72202593 | Msa0041730:three_prime_UTR | 35.0% | |
| !! | GATAGTGAAGTGTTGCAAAA+TGG | + | chr1_1:72202622-72202641 | None:intergenic | 35.0% |
| AGCTATGTACAATGTGGATT+TGG | - | chr1_1:72202918-72202937 | Msa0041730:CDS | 35.0% | |
| !!! | ATTTGGCTGGTTTGACATTT+TGG | - | chr1_1:72202935-72202954 | Msa0041730:CDS | 35.0% |
| CGCGAAAAACATTCACATTA+GGG | + | chr1_1:72202963-72202982 | None:intergenic | 35.0% | |
| TCGCGAAAAACATTCACATT+AGG | + | chr1_1:72202964-72202983 | None:intergenic | 35.0% | |
| GCATATCTAGAAACAACCAA+AGG | + | chr1_1:72203027-72203046 | None:intergenic | 35.0% | |
| AAGCAAGTGCTAAAGATGAT+AGG | - | chr1_1:72203085-72203104 | Msa0041730:CDS | 35.0% | |
| TGCTAAAGATGATAGGCTTA+AGG | - | chr1_1:72203092-72203111 | Msa0041730:CDS | 35.0% | |
| !! | ATAATTGGAAAGGCGTTGAT+CGG | - | chr1_1:72203154-72203173 | Msa0041730:CDS | 35.0% |
| GCCAAAAATGCATAAGCAAT+TGG | - | chr1_1:72203237-72203256 | Msa0041730:CDS | 35.0% | |
| ! | ATATTTACGGAGATTTTCGC+AGG | - | chr1_1:72203345-72203364 | Msa0041730:intron | 35.0% |
| GTGTCATGTGCTCATATAAT+AGG | - | chr1_1:72203440-72203459 | Msa0041730:intron | 35.0% | |
| TGCTCATATAATAGGGTGAA+TGG | - | chr1_1:72203448-72203467 | Msa0041730:intron | 35.0% | |
| TATGGTCTCATATATCATGC+AGG | - | chr1_1:72204162-72204181 | Msa0041730:CDS | 35.0% | |
| GACTATGTAGTTGTATACCA+AGG | + | chr1_1:72204277-72204296 | None:intergenic | 35.0% | |
| TACATAGTCCTAATGAGACT+TGG | - | chr1_1:72204288-72204307 | Msa0041730:CDS | 35.0% | |
| TTGCAAATGGAAGTGACTTT+GGG | + | chr1_1:72204326-72204345 | None:intergenic | 35.0% | |
| TTTGCAAATGGAAGTGACTT+TGG | + | chr1_1:72204327-72204346 | None:intergenic | 35.0% | |
| TCTTTAGTGCATACATCAGA+TGG | + | chr1_1:72204357-72204376 | None:intergenic | 35.0% | |
| GTTACTAATCATAACTGTGG+TGG | + | chr1_1:72204505-72204524 | None:intergenic | 35.0% | |
| CTTGTAAAGGGCTTGAATAA+TGG | + | chr1_1:72204545-72204564 | None:intergenic | 35.0% | |
| CATTATTCAAGCCCTTTACA+AGG | - | chr1_1:72204543-72204562 | Msa0041730:CDS | 35.0% | |
| ACTTCTGTAGTCCTTGTAAA+GGG | + | chr1_1:72204557-72204576 | None:intergenic | 35.0% | |
| TACTTCTGTAGTCCTTGTAA+AGG | + | chr1_1:72204558-72204577 | None:intergenic | 35.0% | |
| ACCAATCTATAGAAGCAGAA+GGG | - | chr1_1:72204700-72204719 | Msa0041730:intron | 35.0% | |
| !! | ATTTTAGTCATAATGGCAGC+AGG | - | chr1_1:72204804-72204823 | Msa0041730:CDS | 35.0% |
| CAACATAGGAGGGATATTAT+GGG | - | chr1_1:72204860-72204879 | Msa0041730:intron | 35.0% | |
| ATATTATGGGTAGGTTATCC+TGG | - | chr1_1:72204873-72204892 | Msa0041730:intron | 35.0% | |
| GCCATAGCACAAGTAATATT+TGG | - | chr1_1:72204912-72204931 | Msa0041730:intron | 35.0% | |
| ATATTTGGAGACTATAACCC+AGG | - | chr1_1:72204927-72204946 | Msa0041730:intron | 35.0% | |
| CGAACTTAACTAAACCAATC+CGG | - | chr1_1:72205079-72205098 | Msa0041730:intron | 35.0% | |
| CAAATTGAACCAAAGCAAAC+CGG | + | chr1_1:72205101-72205120 | None:intergenic | 35.0% | |
| !! | CTCTAACATTCGATTTGGTT+TGG | - | chr1_1:72205155-72205174 | Msa0041730:intron | 35.0% |
| ! | ATTTGAGACCATAAGGTATG+TGG | + | chr1_1:72205361-72205380 | None:intergenic | 35.0% |
| TTGTGGATACCATGTAAATG+GGG | + | chr1_1:72205534-72205553 | None:intergenic | 35.0% | |
| GATTGTGGATACCATGTAAA+TGG | + | chr1_1:72205536-72205555 | None:intergenic | 35.0% | |
| ACTTGATCGACATATGATTG+TGG | + | chr1_1:72205551-72205570 | None:intergenic | 35.0% | |
| AAAACCTGTATGTTCTTCCA+GGG | + | chr1_1:72205619-72205638 | None:intergenic | 35.0% | |
| TAAAACCTGTATGTTCTTCC+AGG | + | chr1_1:72205620-72205639 | None:intergenic | 35.0% | |
| TCCATAGCCAAATTCATAGA+GGG | + | chr1_1:72205654-72205673 | None:intergenic | 35.0% | |
| ATCCATAGCCAAATTCATAG+AGG | + | chr1_1:72205655-72205674 | None:intergenic | 35.0% | |
| ! | TTGACATTTTCGCTTGTGAT+TGG | - | chr1_1:72205818-72205837 | Msa0041730:CDS | 35.0% |
| ! | AAGAACAATGGACCTTTTGA+TGG | - | chr1_1:72205845-72205864 | Msa0041730:CDS | 35.0% |
| !! | TCATGTGGTGTTAGTGTTTT+TGG | - | chr1_1:72205871-72205890 | Msa0041730:CDS | 35.0% |
| ! | AAAGAGCACAAGTTAAGGTT+GGG | - | chr1_1:72205951-72205970 | Msa0041730:CDS | 35.0% |
| !! | GGTAAAAGAAAGTTGGTGAT+TGG | - | chr1_1:72206037-72206056 | Msa0041730:CDS | 35.0% |
| TACATGATAACAGTAGCTAG+TGG | + | chr1_1:72206208-72206227 | None:intergenic | 35.0% | |
| ATGGTGGTAACATTACTATG+TGG | - | chr1_1:72206263-72206282 | Msa0041730:CDS | 35.0% | |
| ! | CATTACTATGTGGTAGTGTA+AGG | - | chr1_1:72206273-72206292 | Msa0041730:CDS | 35.0% |
| ATCAGTTACAGCCTTACATA+GGG | + | chr1_1:72206300-72206319 | None:intergenic | 35.0% | |
| AATCAGTTACAGCCTTACAT+AGG | + | chr1_1:72206301-72206320 | None:intergenic | 35.0% | |
| ATCTTATGAAACCAGAGCCA+AGG | - | chr1_1:72202639-72202658 | Msa0041730:three_prime_UTR | 40.0% | |
| CAACTAGTAAACCCTTCTAC+CGG | - | chr1_1:72202700-72202719 | Msa0041730:CDS | 40.0% | |
| ! | TTGGTGTTCCTGCTTATGAA+TGG | - | chr1_1:72202734-72202753 | Msa0041730:CDS | 40.0% |
| CTTCATGGTGTCTCAAATGT+AGG | - | chr1_1:72202769-72202788 | Msa0041730:CDS | 40.0% | |
| AGCTAGAGCTATGTACAATG+TGG | - | chr1_1:72202912-72202931 | Msa0041730:CDS | 40.0% | |
| ATGTACAATGTGGATTTGGC+TGG | - | chr1_1:72202922-72202941 | Msa0041730:CDS | 40.0% | |
| ! | TGAATGTTTTTCGCGATCCA+AGG | - | chr1_1:72202968-72202987 | Msa0041730:CDS | 40.0% |
| !! | TCGGTTCCATTTTGATGCTA+AGG | - | chr1_1:72203173-72203192 | Msa0041730:CDS | 40.0% |
| AACACACAGCTCTTAAATGG+AGG | + | chr1_1:72203403-72203422 | None:intergenic | 40.0% | |
| TCCATTTAAGAGCTGTGTGT+TGG | - | chr1_1:72203402-72203421 | Msa0041730:intron | 40.0% | |
| TCCAACACACAGCTCTTAAA+TGG | + | chr1_1:72203406-72203425 | None:intergenic | 40.0% | |
| ATTTAAGAGCTGTGTGTTGG+AGG | - | chr1_1:72203405-72203424 | Msa0041730:intron | 40.0% | |
| TTTAAGAGCTGTGTGTTGGA+GGG | - | chr1_1:72203406-72203425 | Msa0041730:intron | 40.0% | |
| TGTTTCAGACTGTGATTCAG+TGG | - | chr1_1:72203982-72204001 | Msa0041730:CDS | 40.0% | |
| GCAGGTTTAAACATGAACTG+CGG | - | chr1_1:72204180-72204199 | Msa0041730:CDS | 40.0% | |
| ATCTATTGTAGACCAAGCCT+TGG | - | chr1_1:72204257-72204276 | Msa0041730:CDS | 40.0% | |
| TGTAGTTGTATACCAAGGCT+TGG | + | chr1_1:72204272-72204291 | None:intergenic | 40.0% | |
| CAAAGAAGCCAAGTCTCATT+AGG | + | chr1_1:72204299-72204318 | None:intergenic | 40.0% | |
| TCACTTCCATTTGCAAACCT+TGG | - | chr1_1:72204330-72204349 | Msa0041730:CDS | 40.0% | |
| TGAATAATGGCATGGTATGC+CGG | + | chr1_1:72204532-72204551 | None:intergenic | 40.0% | |
| AAAGGGCTTGAATAATGGCA+TGG | + | chr1_1:72204540-72204559 | None:intergenic | 40.0% | |
| GACCAATCTATAGAAGCAGA+AGG | - | chr1_1:72204699-72204718 | Msa0041730:intron | 40.0% | |
| ! | AGAGTTAACTTGACATTGCC+TGG | - | chr1_1:72204729-72204748 | Msa0041730:intron | 40.0% |
| ACAAGCTTCTCTTGAAATCC+AGG | + | chr1_1:72204750-72204769 | None:intergenic | 40.0% | |
| AGAGAAGCTTGTGAAAGATG+CGG | - | chr1_1:72204758-72204777 | Msa0041730:intron | 40.0% | |
| GCAACATAGGAGGGATATTA+TGG | - | chr1_1:72204859-72204878 | Msa0041730:intron | 40.0% | |
| ATAGGAGGGATATTATGGGT+AGG | - | chr1_1:72204864-72204883 | Msa0041730:intron | 40.0% | |
| ! | TAAACCAATCCGGTTTGCTT+TGG | - | chr1_1:72205089-72205108 | Msa0041730:intron | 40.0% |
| AATGTTTGCACTGCATCCTT+TGG | - | chr1_1:72205473-72205492 | Msa0041730:intron | 40.0% | |
| CTCATGTTCATGTCTGTCAT+TGG | + | chr1_1:72205575-72205594 | None:intergenic | 40.0% | |
| ATTTCCCTGGAAGAACATAC+AGG | - | chr1_1:72205612-72205631 | Msa0041730:intron | 40.0% | |
| GGGAAATCCCTCTATGAATT+TGG | - | chr1_1:72205644-72205663 | Msa0041730:intron | 40.0% | |
| TCCCTCTATGAATTTGGCTA+TGG | - | chr1_1:72205650-72205669 | Msa0041730:intron | 40.0% | |
| GTGATTGGTGTGAAGAACAA+TGG | - | chr1_1:72205833-72205852 | Msa0041730:CDS | 40.0% | |
| !! | ACCTTTTGATGGATCTCATG+TGG | - | chr1_1:72205856-72205875 | Msa0041730:CDS | 40.0% |
| ACCACATGAGATCCATCAAA+AGG | + | chr1_1:72205860-72205879 | None:intergenic | 40.0% | |
| ! | GAAAGAGCACAAGTTAAGGT+TGG | - | chr1_1:72205950-72205969 | Msa0041730:CDS | 40.0% |
| TAAGCGTGACACTAAGTCCT+TGG | + | chr1_1:72202659-72202678 | None:intergenic | 45.0% | |
| AACACCAAGCCTTGAAATGC+CGG | + | chr1_1:72202722-72202741 | None:intergenic | 45.0% | |
| GTGTTCCTGCTTATGAATGG+TGG | - | chr1_1:72202737-72202756 | Msa0041730:CDS | 45.0% | |
| TCTGACCACCATTCATAAGC+AGG | + | chr1_1:72202745-72202764 | None:intergenic | 45.0% | |
| TGCTTATGAATGGTGGTCAG+AGG | - | chr1_1:72202744-72202763 | Msa0041730:CDS | 45.0% | |
| GTGTCTCAAATGTAGGACCA+GGG | - | chr1_1:72202776-72202795 | Msa0041730:CDS | 45.0% | |
| ! | ATGTTTTTCGCGATCCAAGG+TGG | - | chr1_1:72202971-72202990 | Msa0041730:CDS | 45.0% |
| ! | TGTTTTTCGCGATCCAAGGT+GGG | - | chr1_1:72202972-72202991 | Msa0041730:CDS | 45.0% |
| ! | GTTCGTGGACTACAAGAAGT+TGG | - | chr1_1:72203057-72203076 | Msa0041730:CDS | 45.0% |
| ATTACACCTTGGAGAAGGTC+TGG | + | chr1_1:72203493-72203512 | None:intergenic | 45.0% | |
| CTCTGATTACACCTTGGAGA+AGG | + | chr1_1:72203498-72203517 | None:intergenic | 45.0% | |
| CTTCTCCAAGGTGTAATCAG+AGG | - | chr1_1:72203496-72203515 | Msa0041730:intron | 45.0% | |
| AAAGACTCCTGAAGATGCAG+TGG | - | chr1_1:72204033-72204052 | Msa0041730:CDS | 45.0% | |
| GATGGTCCAAGGTTTGCAAA+TGG | + | chr1_1:72204339-72204358 | None:intergenic | 45.0% | |
| TGCATACATCAGATGGTCCA+AGG | + | chr1_1:72204350-72204369 | None:intergenic | 45.0% | |
| ACTGTGGTGGCATTTGCATT+CGG | + | chr1_1:72204492-72204511 | None:intergenic | 45.0% | |
| CCTTAACTGCTGCAGCAAAA+AGG | + | chr1_1:72204638-72204657 | None:intergenic | 45.0% | |
| ! | CCTTTTTGCTGCAGCAGTTA+AGG | - | chr1_1:72204635-72204654 | Msa0041730:CDS | 45.0% |
| !! | AGTGGTGTTGGTTGTTGGAT+TGG | - | chr1_1:72204677-72204696 | Msa0041730:intron | 45.0% |
| GCCCTTCTGCTTCTATAGAT+TGG | + | chr1_1:72204704-72204723 | None:intergenic | 45.0% | |
| ATCTATAGAAGCAGAAGGGC+TGG | - | chr1_1:72204704-72204723 | Msa0041730:intron | 45.0% | |
| GTAGGTTATCCTGGTCAAGA+TGG | - | chr1_1:72204882-72204901 | Msa0041730:intron | 45.0% | |
| TGAACCAAAGCAAACCGGAT+TGG | + | chr1_1:72205096-72205115 | None:intergenic | 45.0% | |
| ! | AACGAACCTTCATACCGGTT+CGG | - | chr1_1:72205316-72205335 | Msa0041730:intron | 45.0% |
| ! | TATTTGAGACTTGAGACCGG+AGG | - | chr1_1:72205447-72205466 | Msa0041730:intron | 45.0% |
| CAGTGCAAACATTACTCCTC+CGG | + | chr1_1:72205466-72205485 | None:intergenic | 45.0% | |
| TGCTATGTGGGTAGAGAATG+TGG | + | chr1_1:72205687-72205706 | None:intergenic | 45.0% | |
| AGAAGGAGCAGATGCTATGT+GGG | + | chr1_1:72205699-72205718 | None:intergenic | 45.0% | |
| TAGAAGGAGCAGATGCTATG+TGG | + | chr1_1:72205700-72205719 | None:intergenic | 45.0% | |
| GATTGGACAGCACACTATTC+TGG | - | chr1_1:72206054-72206073 | Msa0041730:CDS | 45.0% | |
| ! | GTTTCTGGAGGTGATGAGTA+TGG | - | chr1_1:72206244-72206263 | Msa0041730:CDS | 45.0% |
| TAGTGTAAGGGCCCTATGTA+AGG | - | chr1_1:72206286-72206305 | Msa0041730:CDS | 45.0% | |
| TGACACTAAGTCCTTGGCTC+TGG | + | chr1_1:72202653-72202672 | None:intergenic | 50.0% | |
| ACCCTTCTACCGGCATTTCA+AGG | - | chr1_1:72202710-72202729 | Msa0041730:CDS | 50.0% | |
| GCCTTGAAATGCCGGTAGAA+GGG | + | chr1_1:72202714-72202733 | None:intergenic | 50.0% | |
| AGCCTTGAAATGCCGGTAGA+AGG | + | chr1_1:72202715-72202734 | None:intergenic | 50.0% | |
| TCTACCGGCATTTCAAGGCT+TGG | - | chr1_1:72202715-72202734 | Msa0041730:CDS | 50.0% | |
| GGTGTCTCAAATGTAGGACC+AGG | - | chr1_1:72202775-72202794 | Msa0041730:CDS | 50.0% | |
| GCAGCTGATAGTATCACTGC+TGG | + | chr1_1:72202841-72202860 | None:intergenic | 50.0% | |
| ! | GTTTTTCGCGATCCAAGGTG+GGG | - | chr1_1:72202973-72202992 | Msa0041730:CDS | 50.0% |
| ! | TTTTTCGCGATCCAAGGTGG+GGG | - | chr1_1:72202974-72202993 | Msa0041730:CDS | 50.0% |
| AACTCCAGGGGAAGATCCTT+TGG | - | chr1_1:72203008-72203027 | Msa0041730:CDS | 50.0% | |
| ACAACCAAAGGATCTTCCCC+TGG | + | chr1_1:72203015-72203034 | None:intergenic | 50.0% | |
| GCAGGTGACAAAGCAAGACT+TGG | - | chr1_1:72203363-72203382 | Msa0041730:intron | 50.0% | |
| GGTGACAAAGCAAGACTTGG+AGG | - | chr1_1:72203366-72203385 | Msa0041730:intron | 50.0% | |
| AGGTCTGGATCAGCACATGT+AGG | + | chr1_1:72203478-72203497 | None:intergenic | 50.0% | |
| ! | ACTGGCCTCTGATTACACCT+TGG | + | chr1_1:72203504-72203523 | None:intergenic | 50.0% |
| AAGGTGTAATCAGAGGCCAG+TGG | - | chr1_1:72203503-72203522 | Msa0041730:intron | 50.0% | |
| AGGTGTAATCAGAGGCCAGT+GGG | - | chr1_1:72203504-72203523 | Msa0041730:intron | 50.0% | |
| !! | GATGCAGTGGTGTTGGTTGT+TGG | - | chr1_1:72204672-72204691 | Msa0041730:intron | 50.0% |
| GGTTATCCTGGTCAAGATGG+AGG | - | chr1_1:72204885-72204904 | Msa0041730:intron | 50.0% | |
| GCATTTCCTCCATCTTGACC+AGG | + | chr1_1:72204894-72204913 | None:intergenic | 50.0% | |
| GTAGTTCGGAACCACAGAAC+CGG | - | chr1_1:72205291-72205310 | Msa0041730:intron | 50.0% | |
| CGGTATGAAGGTTCGTTCAC+CGG | + | chr1_1:72205313-72205332 | None:intergenic | 50.0% | |
| CGGTGAACGAACCTTCATAC+CGG | - | chr1_1:72205311-72205330 | Msa0041730:intron | 50.0% | |
| !! | ACGAACCTTCATACCGGTTC+GGG | - | chr1_1:72205317-72205336 | Msa0041730:intron | 50.0% |
| TTATTACCGTCGTCCCGAAC+CGG | + | chr1_1:72205333-72205352 | None:intergenic | 50.0% | |
| GTGGTAGGTCCCCATTTACA+TGG | - | chr1_1:72205522-72205541 | Msa0041730:intron | 50.0% | |
| CTCACCACTTCTGAACTTGG+TGG | + | chr1_1:72205899-72205918 | None:intergenic | 50.0% | |
| CCACTCACCACTTCTGAACT+TGG | + | chr1_1:72205902-72205921 | None:intergenic | 50.0% | |
| CCAAGTTCAGAAGTGGTGAG+TGG | - | chr1_1:72205899-72205918 | Msa0041730:CDS | 50.0% | |
| GGACAGCACACTATTCTGGT+TGG | - | chr1_1:72206058-72206077 | Msa0041730:CDS | 50.0% | |
| TCTGGAGGTGATGAGTATGG+TGG | - | chr1_1:72206247-72206266 | Msa0041730:CDS | 50.0% | |
| !! | TGGTGGTCAGAGGCACTTCA+TGG | - | chr1_1:72202754-72202773 | Msa0041730:CDS | 55.0% |
| AGGGACGCGTTTCGATAGCA+GGG | - | chr1_1:72202795-72202814 | Msa0041730:CDS | 55.0% | |
| ! | CGTTTCGATAGCAGGGTACC+TGG | - | chr1_1:72202802-72202821 | Msa0041730:CDS | 55.0% |
| GCTGGAAAGCTAGTAGCACC+AGG | + | chr1_1:72202823-72202842 | None:intergenic | 55.0% | |
| GGCGTGGACAAGAAACTCCA+GGG | - | chr1_1:72202995-72203014 | Msa0041730:CDS | 55.0% | |
| GCGTGGACAAGAAACTCCAG+GGG | - | chr1_1:72202996-72203015 | Msa0041730:CDS | 55.0% | |
| GCTGATCCAGACCTTCTCCA+AGG | - | chr1_1:72203484-72203503 | Msa0041730:intron | 55.0% | |
| GGTGTAATCAGAGGCCAGTG+GGG | - | chr1_1:72203505-72203524 | Msa0041730:intron | 55.0% | |
| CAAACCCATCTAGACCCCAC+TGG | + | chr1_1:72203522-72203541 | None:intergenic | 55.0% | |
| GCAAGAGCCACTGCATCTTC+AGG | + | chr1_1:72204043-72204062 | None:intergenic | 55.0% | |
| GTGGCTCTTGCACTGAAAGC+AGG | - | chr1_1:72204052-72204071 | Msa0041730:CDS | 55.0% | |
| !! | GCTCTAGAAGCTGCGAAGCA+AGG | - | chr1_1:72204390-72204409 | Msa0041730:CDS | 55.0% |
| TCTTCGGTAACTTACGCGCG+TGG | - | chr1_1:72204582-72204601 | Msa0041730:CDS | 55.0% | |
| CAACACCACTGCATCAGCAG+AGG | + | chr1_1:72204667-72204686 | None:intergenic | 55.0% | |
| CTCTGCTGATGCAGTGGTGT+TGG | - | chr1_1:72204665-72204684 | Msa0041730:intron | 55.0% | |
| GATGCGGCTTCTGCTACCAA+AGG | - | chr1_1:72204774-72204793 | Msa0041730:intron | 55.0% | |
| !! | AGGTTCGTTCACCGGTTCTG+TGG | + | chr1_1:72205305-72205324 | None:intergenic | 55.0% |
| !! | TTCATACCGGTTCGGGACGA+CGG | - | chr1_1:72205324-72205343 | Msa0041730:intron | 55.0% |
| GGAGCCACCAAGTTCAGAAG+TGG | - | chr1_1:72205892-72205911 | Msa0041730:CDS | 55.0% | |
| CTGCTATCGAAACGCGTCCC+TGG | + | chr1_1:72202796-72202815 | None:intergenic | 60.0% | |
| CAGGGACGCGTTTCGATAGC+AGG | - | chr1_1:72202794-72202813 | Msa0041730:CDS | 60.0% | |
| GGGCGTGGACAAGAAACTCC+AGG | - | chr1_1:72202994-72203013 | Msa0041730:CDS | 60.0% | |
| AGAGGCCAGTGGGGTCTAGA+TGG | - | chr1_1:72203514-72203533 | Msa0041730:intron | 60.0% | |
| GAGGCCAGTGGGGTCTAGAT+GGG | - | chr1_1:72203515-72203534 | Msa0041730:intron | 60.0% | |
| TGCAGCCTCTGCTGATGCAG+TGG | - | chr1_1:72204659-72204678 | Msa0041730:intron | 60.0% | |
| GTCGTCCCGAACCGGTATGA+AGG | + | chr1_1:72205325-72205344 | None:intergenic | 60.0% | |
| TCTTGTCCACGCCCCCACCT+TGG | + | chr1_1:72202988-72203007 | None:intergenic | 65.0% | |
| CGCGATCCAAGGTGGGGGCG+TGG | - | chr1_1:72202979-72202998 | Msa0041730:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 72202474 | 72206375 | 72202474 | ID=Msa0041730;Name=Msa0041730 |
| chr1_1 | mRNA | 72202474 | 72206375 | 72202474 | ID=Msa0041730-mRNA-1;Parent=Msa0041730;Name=Msa0041730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=37|0.5|0.6|1|1|1|5|216|749 |
| chr1_1 | exon | 72202474 | 72203327 | 72202474 | ID=Msa0041730-mRNA-1:exon:24030;Parent=Msa0041730-mRNA-1 |
| chr1_1 | exon | 72203901 | 72204665 | 72203901 | ID=Msa0041730-mRNA-1:exon:24029;Parent=Msa0041730-mRNA-1 |
| chr1_1 | exon | 72204776 | 72204859 | 72204776 | ID=Msa0041730-mRNA-1:exon:24028;Parent=Msa0041730-mRNA-1 |
| chr1_1 | exon | 72205344 | 72205422 | 72205344 | ID=Msa0041730-mRNA-1:exon:24027;Parent=Msa0041730-mRNA-1 |
| chr1_1 | exon | 72205655 | 72206375 | 72205655 | ID=Msa0041730-mRNA-1:exon:24026;Parent=Msa0041730-mRNA-1 |
| chr1_1 | five_prime_UTR | 72206339 | 72206375 | 72206339 | ID=Msa0041730-mRNA-1:five_prime_utr;Parent=Msa0041730-mRNA-1 |
| chr1_1 | CDS | 72205655 | 72206338 | 72205655 | ID=Msa0041730-mRNA-1:cds;Parent=Msa0041730-mRNA-1 |
| chr1_1 | CDS | 72205344 | 72205422 | 72205344 | ID=Msa0041730-mRNA-1:cds;Parent=Msa0041730-mRNA-1 |
| chr1_1 | CDS | 72204776 | 72204859 | 72204776 | ID=Msa0041730-mRNA-1:cds;Parent=Msa0041730-mRNA-1 |
| chr1_1 | CDS | 72203901 | 72204665 | 72203901 | ID=Msa0041730-mRNA-1:cds;Parent=Msa0041730-mRNA-1 |
| chr1_1 | CDS | 72202690 | 72203327 | 72202690 | ID=Msa0041730-mRNA-1:cds;Parent=Msa0041730-mRNA-1 |
| chr1_1 | three_prime_UTR | 72202474 | 72202689 | 72202474 | ID=Msa0041730-mRNA-1:three_prime_utr;Parent=Msa0041730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
