Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344320 | RHN82189.1 | 93.214 | 781 | 18 | 2 | 1 | 746 | 17 | 797 | 0.0 | 1490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344320 | sp|Q9LJN4|BXL5_ARATH | 66.316 | 760 | 206 | 10 | 21 | 739 | 23 | 773 | 0.0 | 1029 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344320 | A0A396JV50 | 93.214 | 781 | 18 | 2 | 1 | 746 | 17 | 797 | 0.0 | 1490 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041730 | Msa1344320 | 0.928590 | 2.329687e-92 | -8.615850e-47 |
| Msa0136080 | Msa1344320 | 0.868909 | 4.599550e-66 | -8.615850e-47 |
| Msa0136110 | Msa1344320 | 0.870274 | 1.651725e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344320 | MtrunA17_Chr1g0207281 | 93.214 | 781 | 18 | 2 | 1 | 746 | 17 | 797 | 0.0 | 1490 |
| Msa1344320 | MtrunA17_Chr2g0278761 | 52.618 | 764 | 305 | 11 | 6 | 724 | 14 | 765 | 0.0 | 786 |
| Msa1344320 | MtrunA17_Chr4g0050591 | 51.302 | 768 | 309 | 11 | 6 | 724 | 13 | 764 | 0.0 | 773 |
| Msa1344320 | MtrunA17_Chr1g0194841 | 50.794 | 756 | 324 | 8 | 5 | 724 | 4 | 747 | 0.0 | 765 |
| Msa1344320 | MtrunA17_Chr7g0269871 | 50.408 | 736 | 318 | 8 | 25 | 724 | 29 | 753 | 0.0 | 752 |
| Msa1344320 | MtrunA17_Chr2g0294751 | 48.617 | 759 | 339 | 7 | 1 | 724 | 4 | 746 | 0.0 | 736 |
| Msa1344320 | MtrunA17_Chr5g0425471 | 46.193 | 788 | 358 | 16 | 5 | 739 | 8 | 782 | 0.0 | 694 |
| Msa1344320 | MtrunA17_Chr5g0425431 | 46.842 | 760 | 347 | 15 | 24 | 739 | 34 | 780 | 0.0 | 690 |
| Msa1344320 | MtrunA17_Chr5g0425451 | 45.722 | 783 | 366 | 16 | 5 | 741 | 15 | 784 | 0.0 | 685 |
| Msa1344320 | MtrunA17_Chr3g0115601 | 46.667 | 765 | 344 | 14 | 11 | 724 | 15 | 766 | 0.0 | 684 |
| Msa1344320 | MtrunA17_Chr5g0411571 | 45.408 | 784 | 364 | 11 | 8 | 739 | 11 | 782 | 0.0 | 678 |
| Msa1344320 | MtrunA17_Chr5g0425531 | 45.397 | 793 | 360 | 17 | 5 | 739 | 8 | 785 | 0.0 | 672 |
| Msa1344320 | MtrunA17_Chr6g0461231 | 25.189 | 663 | 329 | 28 | 32 | 590 | 22 | 621 | 1.11e-28 | 122 |
| Msa1344320 | MtrunA17_Chr6g0461221 | 25.000 | 608 | 317 | 24 | 47 | 556 | 38 | 604 | 1.45e-26 | 115 |
| Msa1344320 | MtrunA17_Chr7g0253561 | 25.987 | 608 | 329 | 28 | 38 | 556 | 4 | 579 | 6.28e-26 | 113 |
| Msa1344320 | MtrunA17_Chr6g0461191 | 25.688 | 654 | 307 | 31 | 47 | 590 | 37 | 621 | 8.74e-25 | 109 |
| Msa1344320 | MtrunA17_Chr2g0292341 | 25.493 | 608 | 312 | 28 | 48 | 556 | 40 | 605 | 1.19e-22 | 103 |
| Msa1344320 | MtrunA17_Chr6g0461211 | 25.493 | 608 | 314 | 26 | 47 | 556 | 37 | 603 | 1.58e-22 | 102 |
| Msa1344320 | MtrunA17_Chr7g0253551 | 26.498 | 434 | 211 | 21 | 38 | 388 | 29 | 437 | 9.37e-17 | 84.0 |
| Msa1344320 | MtrunA17_Chr5g0429581 | 24.294 | 531 | 303 | 24 | 73 | 546 | 85 | 573 | 3.10e-15 | 79.7 |
| Msa1344320 | MtrunA17_Chr3g0104081 | 22.962 | 601 | 338 | 24 | 38 | 546 | 22 | 589 | 4.97e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344320 | AT3G19620.1 | 66.316 | 760 | 206 | 10 | 21 | 739 | 23 | 773 | 0.0 | 1029 |
| Msa1344320 | AT5G64570.1 | 52.107 | 783 | 308 | 14 | 4 | 739 | 22 | 784 | 0.0 | 783 |
| Msa1344320 | AT1G02640.1 | 50.130 | 770 | 321 | 10 | 3 | 728 | 4 | 754 | 0.0 | 757 |
| Msa1344320 | AT5G09730.1 | 50.191 | 785 | 315 | 17 | 6 | 739 | 14 | 773 | 0.0 | 751 |
| Msa1344320 | AT5G49360.1 | 49.478 | 766 | 332 | 12 | 1 | 724 | 10 | 762 | 0.0 | 731 |
| Msa1344320 | AT5G10560.1 | 45.899 | 756 | 339 | 10 | 31 | 724 | 35 | 782 | 0.0 | 673 |
| Msa1344320 | AT1G78060.1 | 45.298 | 755 | 364 | 11 | 14 | 726 | 12 | 759 | 0.0 | 661 |
| Msa1344320 | AT5G64570.3 | 56.477 | 579 | 207 | 9 | 4 | 543 | 22 | 594 | 0.0 | 640 |
| Msa1344320 | AT5G64570.2 | 50.929 | 646 | 253 | 12 | 138 | 739 | 1 | 626 | 0.0 | 629 |
| Msa1344320 | AT5G09700.1 | 47.177 | 496 | 239 | 7 | 252 | 739 | 46 | 526 | 1.69e-155 | 462 |
| Msa1344320 | AT3G62710.1 | 26.194 | 607 | 327 | 30 | 45 | 589 | 101 | 648 | 6.78e-27 | 117 |
| Msa1344320 | AT5G20950.2 | 25.039 | 643 | 330 | 29 | 48 | 594 | 36 | 622 | 9.48e-24 | 107 |
| Msa1344320 | AT5G20950.1 | 25.039 | 643 | 330 | 29 | 48 | 594 | 36 | 622 | 9.48e-24 | 107 |
| Msa1344320 | AT5G20950.3 | 25.039 | 643 | 330 | 29 | 48 | 594 | 114 | 700 | 1.17e-23 | 107 |
| Msa1344320 | AT3G47010.1 | 24.104 | 614 | 359 | 25 | 32 | 564 | 5 | 592 | 3.78e-22 | 102 |
| Msa1344320 | AT3G47000.1 | 24.387 | 652 | 337 | 31 | 38 | 590 | 10 | 604 | 5.55e-22 | 101 |
| Msa1344320 | AT3G47040.4 | 23.883 | 649 | 350 | 30 | 38 | 593 | 10 | 607 | 9.67e-22 | 100 |
| Msa1344320 | AT5G04885.2 | 25.182 | 548 | 298 | 24 | 72 | 557 | 125 | 622 | 5.60e-21 | 98.6 |
| Msa1344320 | AT5G04885.3 | 25.182 | 548 | 298 | 24 | 72 | 557 | 108 | 605 | 6.48e-21 | 98.2 |
| Msa1344320 | AT5G04885.1 | 25.182 | 548 | 298 | 24 | 72 | 557 | 108 | 605 | 6.48e-21 | 98.2 |
| Msa1344320 | AT3G47010.2 | 23.241 | 611 | 367 | 23 | 32 | 564 | 5 | 591 | 3.62e-20 | 95.9 |
| Msa1344320 | AT5G20940.1 | 27.156 | 545 | 285 | 29 | 73 | 556 | 111 | 604 | 4.99e-20 | 95.5 |
| Msa1344320 | AT3G47000.3 | 25.909 | 440 | 213 | 18 | 38 | 388 | 10 | 425 | 2.76e-17 | 85.9 |
| Msa1344320 | AT3G47040.3 | 25.173 | 433 | 225 | 19 | 38 | 388 | 10 | 425 | 2.86e-15 | 79.3 |
| Msa1344320 | AT3G47010.4 | 25.342 | 438 | 230 | 19 | 32 | 388 | 5 | 426 | 8.93e-15 | 77.8 |
Find 166 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGCTGGTTTGACATTT+TGG | 0.130488 | tig0006806:+49925 | Msa1344320:CDS |
| CAGTAAAATAAAGTTGTTTC+TGG | 0.208407 | tig0006806:+53219 | Msa1344320:three_prime_UTR |
| GCAACATAGGAGGGATATTA+TGG | 0.220056 | tig0006806:+51848 | Msa1344320:CDS |
| TGAAACATTATGGTACAAAA+TGG | 0.221947 | tig0006806:+49860 | Msa1344320:CDS |
| CTGCTTATGATGTTGATAAT+TGG | 0.227264 | tig0006806:+50129 | Msa1344320:CDS |
| AGGGAAATTTCTACTGATAT+TGG | 0.228239 | tig0006806:-52586 | None:intergenic |
| GCCATAGCACAAGTAATATT+TGG | 0.228912 | tig0006806:+51901 | Msa1344320:CDS |
| GGGAAATCCCTCTATGAATT+TGG | 0.249033 | tig0006806:+52633 | Msa1344320:CDS |
| GTGTCATGTGCTCATATAAT+AGG | 0.254476 | tig0006806:+50429 | Msa1344320:CDS |
| GATTGTGGATACCATGTAAA+TGG | 0.264876 | tig0006806:-52522 | None:intergenic |
| TTATTACCTTAGCATCAAAA+TGG | 0.295146 | tig0006806:-50169 | None:intergenic |
| CAAAGAAGCCAAGTCTCATT+AGG | 0.298010 | tig0006806:-51285 | None:intergenic |
| TGTCAAATTCAAACAACTTA+TGG | 0.308883 | tig0006806:-52790 | None:intergenic |
| AATCCTATCAATTGTTTCAA+TGG | 0.312892 | tig0006806:-52915 | None:intergenic |
| CCTTAACTGCTGCAGCAAAA+AGG | 0.324235 | tig0006806:-51624 | None:intergenic |
| TAAAACCTGTATGTTCTTCC+AGG | 0.325928 | tig0006806:-52606 | None:intergenic |
| GCCCTTCTGCTTCTATAGAT+TGG | 0.325933 | tig0006806:-51690 | None:intergenic |
| GATAGTGAAGTGTTGCAAAA+TGG | 0.335511 | tig0006806:-49609 | None:intergenic |
| AGCCTTGAAATGCCGGTAGA+AGG | 0.350533 | tig0006806:-49702 | None:intergenic |
| GATTGGACAGCACACTATTC+TGG | 0.361517 | tig0006806:+53043 | Msa1344320:CDS |
| GTTCCATTGAAACAATTGAT+AGG | 0.364046 | tig0006806:+52912 | Msa1344320:CDS |
| CACCACATTGATATTACAAT+TGG | 0.364152 | tig0006806:+53095 | Msa1344320:CDS |
| GCAAGAGCCACTGCATCTTC+AGG | 0.368484 | tig0006806:-51029 | None:intergenic |
| GACTAAAATCAATGTTCCTT+TGG | 0.370514 | tig0006806:-51779 | None:intergenic |
| AGCTATGTACAATGTGGATT+TGG | 0.386393 | tig0006806:+49908 | Msa1344320:CDS |
| TTCTGGATCATTATAGTAGA+AGG | 0.386843 | tig0006806:-52702 | None:intergenic |
| AGAGTTAACTTGACATTGCC+TGG | 0.387425 | tig0006806:+51718 | Msa1344320:CDS |
| TTAGTGAAAGAAATATCAAT+TGG | 0.388314 | tig0006806:-51817 | None:intergenic |
| CCACTCACCACTTCTGAACT+TGG | 0.388607 | tig0006806:-52888 | None:intergenic |
| GATGCAGTGGTGTTGGTTGT+TGG | 0.395186 | tig0006806:+51661 | Msa1344320:CDS |
| TTTGCAAATGGAAGTGACTT+TGG | 0.397416 | tig0006806:-51313 | None:intergenic |
| TTGCAAATGGAAGTGACTTT+GGG | 0.402569 | tig0006806:-51312 | None:intergenic |
| AACTCCAGGGGAAGATCCTT+TGG | 0.404077 | tig0006806:+49998 | Msa1344320:CDS |
| CATTACTATGTGGTAGTGTA+AGG | 0.406462 | tig0006806:+53263 | Msa1344320:three_prime_UTR |
| TGCTAAAGATGATAGGCTTA+AGG | 0.408182 | tig0006806:+50082 | Msa1344320:CDS |
| CTCATGTTCATGTCTGTCAT+TGG | 0.420175 | tig0006806:-52561 | None:intergenic |
| AAAGAGCACAAGTTAAGGTT+GGG | 0.420572 | tig0006806:+52940 | Msa1344320:CDS |
| ACAAGCTTCTCTTGAAATCC+AGG | 0.424917 | tig0006806:-51736 | None:intergenic |
| TCTACCGGCATTTCAAGGCT+TGG | 0.426574 | tig0006806:+49705 | Msa1344320:CDS |
| CTCTGCTGATGCAGTGGTGT+TGG | 0.432899 | tig0006806:+51654 | Msa1344320:CDS |
| ACCCTTCTACCGGCATTTCA+AGG | 0.433066 | tig0006806:+49700 | Msa1344320:CDS |
| ACTTCTGTAGTCCTTGTAAA+GGG | 0.438650 | tig0006806:-51543 | None:intergenic |
| TACTTCTGTAGTCCTTGTAA+AGG | 0.441252 | tig0006806:-51544 | None:intergenic |
| CACTAAAGAAAATCAGCAAT+TGG | 0.455452 | tig0006806:+51357 | Msa1344320:CDS |
| ATTTGAAAGAGCACAAGTTA+AGG | 0.457325 | tig0006806:+52935 | Msa1344320:CDS |
| TTTGTGTTATGTTGGAGATA+TGG | 0.460291 | tig0006806:-49468 | None:intergenic |
| AAGCAAGTGCTAAAGATGAT+AGG | 0.460961 | tig0006806:+50075 | Msa1344320:CDS |
| ACTGTGGTGGCATTTGCATT+CGG | 0.462873 | tig0006806:-51478 | None:intergenic |
| TGCTCATATAATAGGGTGAA+TGG | 0.462881 | tig0006806:+50437 | Msa1344320:CDS |
| TTGGTGTTCCTGCTTATGAA+TGG | 0.463212 | tig0006806:+49724 | Msa1344320:CDS |
| ATTACACCTTGGAGAAGGTC+TGG | 0.463689 | tig0006806:-50479 | None:intergenic |
| GAAACATTATGGTACAAAAT+GGG | 0.466706 | tig0006806:+49861 | Msa1344320:CDS |
| GAAAGAGCACAAGTTAAGGT+TGG | 0.467163 | tig0006806:+52939 | Msa1344320:CDS |
| AGTGGTGTTGGTTGTTGGAT+TGG | 0.468220 | tig0006806:+51666 | Msa1344320:CDS |
| ATCTATAGAAGCAGAAGGGC+TGG | 0.468944 | tig0006806:+51693 | Msa1344320:CDS |
| TGCAGCCTCTGCTGATGCAG+TGG | 0.470889 | tig0006806:+51648 | Msa1344320:CDS |
| TGTCATGTGCTCATATAATA+GGG | 0.473992 | tig0006806:+50430 | Msa1344320:CDS |
| AATCAGTTACAGCCTTACAT+AGG | 0.476657 | tig0006806:-53288 | None:intergenic |
| TAGTGTAAGGGCCCTATGTA+AGG | 0.478854 | tig0006806:+53276 | Msa1344320:three_prime_UTR |
| TCCCTCTATGAATTTGGCTA+TGG | 0.484680 | tig0006806:+52639 | Msa1344320:CDS |
| TGACACTAAGTCCTTGGCTC+TGG | 0.485207 | tig0006806:-49640 | None:intergenic |
| TCACTTCCATTTGCAAACCT+TGG | 0.486006 | tig0006806:+51319 | Msa1344320:CDS |
| ATTTCCCTGGAAGAACATAC+AGG | 0.486697 | tig0006806:+52601 | Msa1344320:CDS |
| CTGCTGTCGAAACGCGTCCC+TGG | 0.488388 | tig0006806:-49783 | None:intergenic |
| CGTTATTCAAGCCCTTTACA+AGG | 0.490137 | tig0006806:+51532 | Msa1344320:CDS |
| AACACCAAGCCTTGAAATGC+CGG | 0.491966 | tig0006806:-49709 | None:intergenic |
| TGAATAACGGCATGGTATGC+CGG | 0.494331 | tig0006806:-51518 | None:intergenic |
| TATGCTGTAAATTATGTTCG+TGG | 0.495123 | tig0006806:+50032 | Msa1344320:CDS |
| CAACATAGGAGGGATATTAT+GGG | 0.496768 | tig0006806:+51849 | Msa1344320:CDS |
| ATTGTGGATACCATGTAAAT+GGG | 0.498218 | tig0006806:-52521 | None:intergenic |
| CAGGGACGCGTTTCGACAGC+AGG | 0.500208 | tig0006806:+49784 | Msa1344320:CDS |
| TCCAAATATTACTTGTGCTA+TGG | 0.501814 | tig0006806:-51902 | None:intergenic |
| ACTACAGAAGTACATTTCTT+CGG | 0.503346 | tig0006806:+51555 | Msa1344320:CDS |
| TAGTGAAAGAAATATCAATT+GGG | 0.504026 | tig0006806:-51816 | None:intergenic |
| ATACTAATATACTATAGTTA+TGG | 0.507170 | tig0006806:-53172 | None:intergenic |
| CGTTTCGACAGCAGGGTACC+AGG | 0.507269 | tig0006806:+49792 | Msa1344320:CDS |
| ATGTACAATGTGGATTTGGC+TGG | 0.507340 | tig0006806:+49912 | Msa1344320:CDS |
| GATGGTCCAAGGTTTGCAAA+TGG | 0.509359 | tig0006806:-51325 | None:intergenic |
| GCCTTGAAATGCCGGTAGAA+GGG | 0.510160 | tig0006806:-49701 | None:intergenic |
| ATATTATGGGTAGGTTATCC+TGG | 0.512772 | tig0006806:+51862 | Msa1344320:CDS |
| ATATTTGGAGACTATAACCC+AGG | 0.518089 | tig0006806:+51916 | Msa1344320:CDS |
| ACTAAAAGTATAAGCAACAT+AGG | 0.518647 | tig0006806:+51835 | Msa1344320:CDS |
| TCTTTAGTGCATACATCAGA+TGG | 0.520982 | tig0006806:-51343 | None:intergenic |
| CTTGTAAAGGGCTTGAATAA+CGG | 0.521302 | tig0006806:-51531 | None:intergenic |
| TGGTGGTCAGAGGCACTTCA+TGG | 0.521560 | tig0006806:+49744 | Msa1344320:CDS |
| TCAAGGAAGATATTATTAAG+TGG | 0.524739 | tig0006806:-52744 | None:intergenic |
| TATCAATTGCTTGATCATCA+AGG | 0.526561 | tig0006806:-52761 | None:intergenic |
| GGTAAACGAAAGTTGGTGAT+TGG | 0.526693 | tig0006806:+53026 | Msa1344320:CDS |
| GTGGCTCTTGCACTGAAAGC+AGG | 0.529634 | tig0006806:+51041 | Msa1344320:CDS |
| ATCAGTTACAGCCTTACATA+GGG | 0.538855 | tig0006806:-53287 | None:intergenic |
| CTTCATGGTGTCTCAAATGT+AGG | 0.539417 | tig0006806:+49759 | Msa1344320:CDS |
| AATATCAGTAGAAATTTCCC+TGG | 0.539925 | tig0006806:+52588 | Msa1344320:CDS |
| GGGCGTGGACAAGAAACTCC+AGG | 0.541036 | tig0006806:+49984 | Msa1344320:CDS |
| GTTCGTGGACTACAAGAAGT+TGG | 0.541602 | tig0006806:+50047 | Msa1344320:CDS |
| AAAAGTATAAGCAACATAGG+AGG | 0.545184 | tig0006806:+51838 | Msa1344320:CDS |
| AGAAGGAGCAGATGCTATGT+GGG | 0.551576 | tig0006806:-52685 | None:intergenic |
| ACCACATGAGATCCATCAAA+AGG | 0.551827 | tig0006806:-52846 | None:intergenic |
| ATAATTGGAAAGGCGTTGAT+CGG | 0.552315 | tig0006806:+50144 | Msa1344320:CDS |
| GGACAGCACACTATTCTGGT+TGG | 0.552636 | tig0006806:+53047 | Msa1344320:CDS |
| ATCCATAGCCAAATTCATAG+AGG | 0.557580 | tig0006806:-52641 | None:intergenic |
| TAAGCGTGACACTAAGTCCT+TGG | 0.559465 | tig0006806:-49646 | None:intergenic |
| CTCTGATTACACCTTGGAGA+AGG | 0.562519 | tig0006806:-50484 | None:intergenic |
| ATCTATTGTAGACCAAGCCT+TGG | 0.563804 | tig0006806:+51246 | Msa1344320:CDS |
| GCAGCTGATAGTATCACTGC+TGG | 0.566392 | tig0006806:-49828 | None:intergenic |
| TAAAATAAAGTTGTTTCTGG+AGG | 0.569057 | tig0006806:+53222 | Msa1344320:three_prime_UTR |
| AAAACCTGTATGTTCTTCCA+GGG | 0.569628 | tig0006806:-52605 | None:intergenic |
| CTCACCACTTCTGAACTTGG+TGG | 0.569744 | tig0006806:-52885 | None:intergenic |
| TCTGACCACCATTCATAAGC+AGG | 0.570631 | tig0006806:-49732 | None:intergenic |
| TGTTTCAGACTGTGATTCAG+TGG | 0.570986 | tig0006806:+50971 | Msa1344320:intron |
| GCTCTAGAAGCTGCGAAGCA+AGG | 0.571329 | tig0006806:+51379 | Msa1344320:CDS |
| GGTGTCTCAAATGTAGGACC+AGG | 0.572126 | tig0006806:+49765 | Msa1344320:CDS |
| GTGTTCCTGCTTATGAATGG+TGG | 0.572399 | tig0006806:+49727 | Msa1344320:CDS |
| TGCATACATCAGATGGTCCA+AGG | 0.572554 | tig0006806:-51336 | None:intergenic |
| GTAGGTTATCCTGGTCAAGA+TGG | 0.574821 | tig0006806:+51871 | Msa1344320:CDS |
| TACATAGTCCTAATGAGACT+TGG | 0.576502 | tig0006806:+51277 | Msa1344320:CDS |
| TAGAAGGAGCAGATGCTATG+TGG | 0.577310 | tig0006806:-52686 | None:intergenic |
| TCCATAGCCAAATTCATAGA+GGG | 0.577492 | tig0006806:-52640 | None:intergenic |
| TAGTGATGGTAAACGAAAGT+TGG | 0.578355 | tig0006806:+53019 | Msa1344320:CDS |
| GGAGCCACCAAGTTCAGAAG+TGG | 0.580834 | tig0006806:+52881 | Msa1344320:CDS |
| CAAATTCAAACAACTTATGG+TGG | 0.582768 | tig0006806:-52787 | None:intergenic |
| GTTATGATTAGTAACTATGC+CGG | 0.583450 | tig0006806:+51499 | Msa1344320:CDS |
| TGTAGTTGTATACCAAGGCT+TGG | 0.586966 | tig0006806:-51258 | None:intergenic |
| GCATTTCCTCCATCTTGACC+AGG | 0.588584 | tig0006806:-51880 | None:intergenic |
| ATTACTATGTGGTAGTGTAA+GGG | 0.592903 | tig0006806:+53264 | Msa1344320:three_prime_UTR |
| GTGGTAGGTCCCCATTTACA+TGG | 0.594929 | tig0006806:+52511 | Msa1344320:CDS |
| CAACTAGTAAACCCTTCTAC+CGG | 0.596049 | tig0006806:+49690 | Msa1344320:CDS |
| ACAACCAAAGGATCTTCCCC+TGG | 0.596108 | tig0006806:-50002 | None:intergenic |
| GGCGTGGACAAGAAACTCCA+GGG | 0.596923 | tig0006806:+49985 | Msa1344320:CDS |
| AAAGTATAAGCAACATAGGA+GGG | 0.598306 | tig0006806:+51839 | Msa1344320:CDS |
| GACCAATCTATAGAAGCAGA+AGG | 0.600841 | tig0006806:+51688 | Msa1344320:CDS |
| TGCTATGTGGGTAGAGAATG+TGG | 0.601022 | tig0006806:-52673 | None:intergenic |
| CTAAGTAATGTTGATAGTGA+TGG | 0.602583 | tig0006806:+53005 | Msa1344320:CDS |
| TGCTTATGAATGGTGGTCAG+AGG | 0.605760 | tig0006806:+49734 | Msa1344320:CDS |
| ATCTTATGAAACCAGAGCCA+AGG | 0.606136 | tig0006806:+49629 | Msa1344320:CDS |
| TATGATGTTGATAATTGGAA+AGG | 0.616039 | tig0006806:+50134 | Msa1344320:CDS |
| GTTTCTGGAGGTGATGAGCA+TGG | 0.620873 | tig0006806:+53234 | Msa1344320:three_prime_UTR |
| AGGTCTGGATCAGCACATGT+AGG | 0.621412 | tig0006806:-50464 | None:intergenic |
| AAAGACTCCTGAAGATGCAG+TGG | 0.622680 | tig0006806:+51022 | Msa1344320:CDS |
| GTGATTGGTGTGAAGAACAA+TGG | 0.624345 | tig0006806:+52822 | Msa1344320:CDS |
| GGTTATCCTGGTCAAGATGG+AGG | 0.630089 | tig0006806:+51874 | Msa1344320:CDS |
| AGAGAAGCTTGTGAAAGATG+CGG | 0.633713 | tig0006806:+51747 | Msa1344320:CDS |
| GTTACTAATCATAACTGTGG+TGG | 0.637990 | tig0006806:-51491 | None:intergenic |
| CATTGATATTACAATTGGAG+AGG | 0.641938 | tig0006806:+53100 | Msa1344320:CDS |
| TCTTCGGTAACTTACGCGCG+TGG | 0.642928 | tig0006806:+51571 | Msa1344320:CDS |
| GATGCGGCTTCTGCTACCAA+AGG | 0.645797 | tig0006806:+51763 | Msa1344320:CDS |
| CAACACCACTGCATCAGCAG+AGG | 0.646395 | tig0006806:-51653 | None:intergenic |
| GCTGGAAAGCTAGTAGCACC+TGG | 0.652192 | tig0006806:-49810 | None:intergenic |
| ACTTGATCGACATATGATTG+TGG | 0.652204 | tig0006806:-52537 | None:intergenic |
| GACTATGTAGTTGTATACCA+AGG | 0.652901 | tig0006806:-51263 | None:intergenic |
| GCTGATCCAGACCTTCTCCA+AGG | 0.658385 | tig0006806:+50473 | Msa1344320:CDS |
| ATAGGAGGGATATTATGGGT+AGG | 0.660257 | tig0006806:+51853 | Msa1344320:CDS |
| ACCAATCTATAGAAGCAGAA+GGG | 0.660435 | tig0006806:+51689 | Msa1344320:CDS |
| CCAAGTTCAGAAGTGGTGAG+TGG | 0.668174 | tig0006806:+52888 | Msa1344320:CDS |
| AAAGGGCTTGAATAACGGCA+TGG | 0.670068 | tig0006806:-51526 | None:intergenic |
| AGCTAGAGCTATGTACAATG+TGG | 0.670531 | tig0006806:+49902 | Msa1344320:CDS |
| TACATGATAACAGTAGCTAG+TGG | 0.672904 | tig0006806:-53195 | None:intergenic |
| CTCCAATTGTAATATCAATG+TGG | 0.675550 | tig0006806:-53097 | None:intergenic |
| ATAGTTACTAATCATAACTG+TGG | 0.678359 | tig0006806:-51494 | None:intergenic |
| GCATATCTAGAAACAACCAA+AGG | 0.695865 | tig0006806:-50014 | None:intergenic |
| ATGGTGGTAACATTACTATG+TGG | 0.697084 | tig0006806:+53253 | Msa1344320:three_prime_UTR |
| GCGTGGACAAGAAACTCCAG+GGG | 0.698903 | tig0006806:+49986 | Msa1344320:CDS |
| GTGTCTCAAATGTAGGACCA+GGG | 0.699223 | tig0006806:+49766 | Msa1344320:CDS |
| AGGGACGCGTTTCGACAGCA+GGG | 0.700672 | tig0006806:+49785 | Msa1344320:CDS |
| TTGTGGATACCATGTAAATG+GGG | 0.746412 | tig0006806:-52520 | None:intergenic |
| GCAGGTTTAAACATGAACTG+CGG | 0.750864 | tig0006806:+51169 | Msa1344320:intron |
| TCTGGAGGTGATGAGCATGG+TGG | 0.795406 | tig0006806:+53237 | Msa1344320:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTAAGATAAAAAATT+TGG | + | tig0006806:51444-51463 | Msa1344320:CDS | 10.0% |
| !!! | TTTATCTTAGTTTTTGATAA+AGG | - | tig0006806:51439-51458 | None:intergenic | 15.0% |
| !! | AAATATGTAAAGATAAATGT+AGG | - | tig0006806:51970-51989 | None:intergenic | 15.0% |
| !!! | GCTATTATAAATTGATAATT+AGG | - | tig0006806:52192-52211 | None:intergenic | 15.0% |
| !! | AAAATAAAAGTTTATGTGTT+TGG | - | tig0006806:52411-52430 | None:intergenic | 15.0% |
| !!! | ACAGTGAAAATTTTATTTAT+AGG | + | tig0006806:52489-52508 | Msa1344320:intron | 15.0% |
| !! | ATACTAATATACTATAGTTA+TGG | - | tig0006806:53175-53194 | None:intergenic | 15.0% |
| !!! | CTAGTTTTAATGAAACATTA+TGG | + | tig0006806:49850-49869 | Msa1344320:CDS | 20.0% |
| !! | GTAAAAATATTTAACACGTT+CGG | - | tig0006806:50284-50303 | None:intergenic | 20.0% |
| !! | AAAAATCAAATGATTGCTTA+GGG | - | tig0006806:50541-50560 | None:intergenic | 20.0% |
| !! | AAAAAATCAAATGATTGCTT+AGG | - | tig0006806:50542-50561 | None:intergenic | 20.0% |
| !! | TCAACTAAATCCTATATTTA+GGG | - | tig0006806:50652-50671 | None:intergenic | 20.0% |
| !! | TTGACTAAATTACTAGAATT+TGG | + | tig0006806:50668-50687 | Msa1344320:intron | 20.0% |
| !!! | AATTAGTAGTATTGTTTTAC+AGG | + | tig0006806:50723-50742 | Msa1344320:intron | 20.0% |
| !! | TCTATCATAGTATTTATTAC+AGG | + | tig0006806:50766-50785 | Msa1344320:intron | 20.0% |
| !!! | CAAAAAAGTATAAGATATCA+GGG | - | tig0006806:50940-50959 | None:intergenic | 20.0% |
| !!! | TCAAAAAAGTATAAGATATC+AGG | - | tig0006806:50941-50960 | None:intergenic | 20.0% |
| !! | TATTGGATTATTAAATGGTA+TGG | + | tig0006806:51133-51152 | Msa1344320:intron | 20.0% |
| !!! | AACATTGATTTTAGTCATAA+TGG | + | tig0006806:51786-51805 | Msa1344320:CDS | 20.0% |
| !! | TAGTGAAAGAAATATCAATT+GGG | - | tig0006806:51819-51838 | None:intergenic | 20.0% |
| !! | TTAGTGAAAGAAATATCAAT+TGG | - | tig0006806:51820-51839 | None:intergenic | 20.0% |
| !!! | AATGTTTTTTTAACTGTCAT+AGG | - | tig0006806:51998-52017 | None:intergenic | 20.0% |
| !! | TTGATTCATAAAAATCAGTT+TGG | + | tig0006806:52225-52244 | Msa1344320:intron | 20.0% |
| !!! | GTGAAAATTTTATTTATAGG+TGG | + | tig0006806:52492-52511 | Msa1344320:intron | 20.0% |
| !!! | AAATTTTATTTATAGGTGGT+AGG | + | tig0006806:52496-52515 | Msa1344320:intron | 20.0% |
| !!! | ATTATTAAGTGGTTTTGAAA+TGG | - | tig0006806:52736-52755 | None:intergenic | 20.0% |
| !!! | TTACAAGTTTTGTGTTATGT+TGG | - | tig0006806:49479-49498 | None:intergenic | 25.0% |
| ! | TGAAACATTATGGTACAAAA+TGG | + | tig0006806:49860-49879 | Msa1344320:CDS | 25.0% |
| ! | GAAACATTATGGTACAAAAT+GGG | + | tig0006806:49861-49880 | Msa1344320:CDS | 25.0% |
| !!! | TATGATGTTGATAATTGGAA+AGG | + | tig0006806:50134-50153 | Msa1344320:CDS | 25.0% |
| ! | TTATTACCTTAGCATCAAAA+TGG | - | tig0006806:50172-50191 | None:intergenic | 25.0% |
| ! | TATCACCATGTAGATATTTA+CGG | + | tig0006806:50321-50340 | Msa1344320:intron | 25.0% |
| ! | TAGTTTATCATAGCTATCAT+AGG | - | tig0006806:50615-50634 | None:intergenic | 25.0% |
| ! | GTCAACTAAATCCTATATTT+AGG | - | tig0006806:50653-50672 | None:intergenic | 25.0% |
| ! | ATTACTAGAATTTGGAAAGT+TGG | + | tig0006806:50676-50695 | Msa1344320:intron | 25.0% |
| ! | ACTGCAAAAAAAATTCTGAT+TGG | + | tig0006806:51088-51107 | Msa1344320:intron | 25.0% |
| ! | CTGCAAAAAAAATTCTGATT+GGG | + | tig0006806:51089-51108 | Msa1344320:intron | 25.0% |
| ! | AATAAAGTTATGACTGGTAT+TGG | + | tig0006806:51116-51135 | Msa1344320:intron | 25.0% |
| !! | ACTGGTATTGGATTATTAAA+TGG | + | tig0006806:51128-51147 | Msa1344320:intron | 25.0% |
| ! | ATAAAAAATTTGGCTGTGAT+TGG | + | tig0006806:51454-51473 | Msa1344320:CDS | 25.0% |
| ! | ATAGTTACTAATCATAACTG+TGG | - | tig0006806:51497-51516 | None:intergenic | 25.0% |
| !! | ACTAAAAGTATAAGCAACAT+AGG | + | tig0006806:51835-51854 | Msa1344320:CDS | 25.0% |
| ! | TTTAATAGAAAGCTATACCT+GGG | - | tig0006806:51936-51955 | None:intergenic | 25.0% |
| !!! | TACAATTCGGTTTTATGTAA+AGG | + | tig0006806:52258-52277 | Msa1344320:intron | 25.0% |
| !! | TGTTTATATTTGAGACCATA+AGG | - | tig0006806:52357-52376 | None:intergenic | 25.0% |
| ! | TTATGTGTTTGGTATAAACT+TGG | - | tig0006806:52400-52419 | None:intergenic | 25.0% |
| ! | TCAAGGAAGATATTATTAAG+TGG | - | tig0006806:52747-52766 | None:intergenic | 25.0% |
| ! | TGTCAAATTCAAACAACTTA+TGG | - | tig0006806:52793-52812 | None:intergenic | 25.0% |
| ! | AATCCTATCAATTGTTTCAA+TGG | - | tig0006806:52918-52937 | None:intergenic | 25.0% |
| !! | CAGTAAAATAAAGTTGTTTC+TGG | + | tig0006806:53219-53238 | Msa1344320:three_prime_UTR | 25.0% |
| !!! | TAAAATAAAGTTGTTTCTGG+AGG | + | tig0006806:53222-53241 | Msa1344320:three_prime_UTR | 25.0% |
| TTTGTGTTATGTTGGAGATA+TGG | - | tig0006806:49471-49490 | None:intergenic | 30.0% | |
| !! | GCATGTTTTTGACTAGTAAT+TGG | - | tig0006806:49555-49574 | None:intergenic | 30.0% |
| !!! | AATGGAAAGTTGCTAGTTTT+AGG | - | tig0006806:49594-49613 | None:intergenic | 30.0% |
| TATGCTGTAAATTATGTTCG+TGG | + | tig0006806:50032-50051 | Msa1344320:CDS | 30.0% | |
| !! | CTGCTTATGATGTTGATAAT+TGG | + | tig0006806:50129-50148 | Msa1344320:CDS | 30.0% |
| TGGCAGCATATTAAATTTCA+TGG | - | tig0006806:50210-50229 | None:intergenic | 30.0% | |
| ! | TCCAATTGCTTATGCATTTT+TGG | - | tig0006806:50230-50249 | None:intergenic | 30.0% |
| TCTACATGGTGATATATGAT+TGG | - | tig0006806:50315-50334 | None:intergenic | 30.0% | |
| AATCTCCGTAAATATCTACA+TGG | - | tig0006806:50329-50348 | None:intergenic | 30.0% | |
| TGTCATGTGCTCATATAATA+GGG | + | tig0006806:50430-50449 | Msa1344320:CDS | 30.0% | |
| ! | TTAAGTTAGCTTGACATGTA+AGG | - | tig0006806:50566-50585 | None:intergenic | 30.0% |
| CTATCTTAGTCCCTAAATAT+AGG | + | tig0006806:50639-50658 | Msa1344320:intron | 30.0% | |
| ACGCAGTTGAAAATTTGAAA+CGG | + | tig0006806:50842-50861 | Msa1344320:intron | 30.0% | |
| TGAAACGGTGTCTTATAAAA+AGG | + | tig0006806:50857-50876 | Msa1344320:intron | 30.0% | |
| GAAACGGTGTCTTATAAAAA+GGG | + | tig0006806:50858-50877 | Msa1344320:intron | 30.0% | |
| GTGTCTTATAAAAAGGGATA+AGG | + | tig0006806:50864-50883 | Msa1344320:intron | 30.0% | |
| GGAAGAAATAAAGTTATGAC+TGG | + | tig0006806:51110-51129 | Msa1344320:intron | 30.0% | |
| CACTAAAGAAAATCAGCAAT+TGG | + | tig0006806:51357-51376 | Msa1344320:CDS | 30.0% | |
| ! | GTTTTGCTTGAAAACAACAA+AGG | + | tig0006806:51406-51425 | Msa1344320:CDS | 30.0% |
| GTTATGATTAGTAACTATGC+CGG | + | tig0006806:51499-51518 | Msa1344320:CDS | 30.0% | |
| ! | ACTACAGAAGTACATTTCTT+CGG | + | tig0006806:51555-51574 | Msa1344320:CDS | 30.0% |
| GACTAAAATCAATGTTCCTT+TGG | - | tig0006806:51782-51801 | None:intergenic | 30.0% | |
| ! | AAAAGTATAAGCAACATAGG+AGG | + | tig0006806:51838-51857 | Msa1344320:CDS | 30.0% |
| AAAGTATAAGCAACATAGGA+GGG | + | tig0006806:51839-51858 | Msa1344320:CDS | 30.0% | |
| TCCAAATATTACTTGTGCTA+TGG | - | tig0006806:51905-51924 | None:intergenic | 30.0% | |
| GTTTAATAGAAAGCTATACC+TGG | - | tig0006806:51937-51956 | None:intergenic | 30.0% | |
| AAAAATCAAACGATGACGAA+TGG | - | tig0006806:52117-52136 | None:intergenic | 30.0% | |
| AACAACTCTAACATTCGATT+TGG | + | tig0006806:52139-52158 | Msa1344320:intron | 30.0% | |
| TGGTTCGAAAAACTACAATT+CGG | + | tig0006806:52245-52264 | Msa1344320:intron | 30.0% | |
| !! | GGTTTTATGTAAAGGTAGTT+CGG | + | tig0006806:52266-52285 | Msa1344320:intron | 30.0% |
| TAATGTTACCACATACCTTA+TGG | + | tig0006806:52339-52358 | Msa1344320:intron | 30.0% | |
| ! | TTATATTTGAGACTTGAGAC+CGG | + | tig0006806:52433-52452 | Msa1344320:intron | 30.0% |
| ! | AATTTTCACTGTTAGTCCAA+AGG | - | tig0006806:52481-52500 | None:intergenic | 30.0% |
| ATTGTGGATACCATGTAAAT+GGG | - | tig0006806:52524-52543 | None:intergenic | 30.0% | |
| AGGGAAATTTCTACTGATAT+TGG | - | tig0006806:52589-52608 | None:intergenic | 30.0% | |
| AATATCAGTAGAAATTTCCC+TGG | + | tig0006806:52588-52607 | Msa1344320:CDS | 30.0% | |
| ! | AGAACATACAGGTTTTACAA+TGG | + | tig0006806:52612-52631 | Msa1344320:CDS | 30.0% |
| ! | GAACATACAGGTTTTACAAT+GGG | + | tig0006806:52613-52632 | Msa1344320:CDS | 30.0% |
| TTCTGGATCATTATAGTAGA+AGG | - | tig0006806:52705-52724 | None:intergenic | 30.0% | |
| ! | TTGAAATGGATGTGTTTTTC+TGG | - | tig0006806:52722-52741 | None:intergenic | 30.0% |
| TATCAATTGCTTGATCATCA+AGG | - | tig0006806:52764-52783 | None:intergenic | 30.0% | |
| CAAATTCAAACAACTTATGG+TGG | - | tig0006806:52790-52809 | None:intergenic | 30.0% | |
| GTTCCATTGAAACAATTGAT+AGG | + | tig0006806:52912-52931 | Msa1344320:CDS | 30.0% | |
| ! | ATTTGAAAGAGCACAAGTTA+AGG | + | tig0006806:52935-52954 | Msa1344320:CDS | 30.0% |
| !! | CTAAGTAATGTTGATAGTGA+TGG | + | tig0006806:53005-53024 | Msa1344320:CDS | 30.0% |
| CACCACATTGATATTACAAT+TGG | + | tig0006806:53095-53114 | Msa1344320:CDS | 30.0% | |
| CTCCAATTGTAATATCAATG+TGG | - | tig0006806:53100-53119 | None:intergenic | 30.0% | |
| CATTGATATTACAATTGGAG+AGG | + | tig0006806:53100-53119 | Msa1344320:CDS | 30.0% | |
| ! | ATTACTATGTGGTAGTGTAA+GGG | + | tig0006806:53264-53283 | Msa1344320:three_prime_UTR | 30.0% |
| CAAAAACATGCATGTGACAA+AGG | + | tig0006806:49564-49583 | Msa1344320:CDS | 35.0% | |
| !! | GATAGTGAAGTGTTGCAAAA+TGG | - | tig0006806:49612-49631 | None:intergenic | 35.0% |
| AGCTATGTACAATGTGGATT+TGG | + | tig0006806:49908-49927 | Msa1344320:CDS | 35.0% | |
| !!! | ATTTGGCTGGTTTGACATTT+TGG | + | tig0006806:49925-49944 | Msa1344320:CDS | 35.0% |
| CGCGAAAAACATTCACATTA+GGG | - | tig0006806:49953-49972 | None:intergenic | 35.0% | |
| TCGCGAAAAACATTCACATT+AGG | - | tig0006806:49954-49973 | None:intergenic | 35.0% | |
| GCATATCTAGAAACAACCAA+AGG | - | tig0006806:50017-50036 | None:intergenic | 35.0% | |
| AAGCAAGTGCTAAAGATGAT+AGG | + | tig0006806:50075-50094 | Msa1344320:CDS | 35.0% | |
| TGCTAAAGATGATAGGCTTA+AGG | + | tig0006806:50082-50101 | Msa1344320:CDS | 35.0% | |
| !! | ATAATTGGAAAGGCGTTGAT+CGG | + | tig0006806:50144-50163 | Msa1344320:CDS | 35.0% |
| GCCAAAAATGCATAAGCAAT+TGG | + | tig0006806:50226-50245 | Msa1344320:intron | 35.0% | |
| ! | ATATTTACGGAGATTTTCGC+AGG | + | tig0006806:50334-50353 | Msa1344320:intron | 35.0% |
| GTGTCATGTGCTCATATAAT+AGG | + | tig0006806:50429-50448 | Msa1344320:CDS | 35.0% | |
| TGCTCATATAATAGGGTGAA+TGG | + | tig0006806:50437-50456 | Msa1344320:CDS | 35.0% | |
| CATAGCTATCATAGGTACAA+AGG | - | tig0006806:50607-50626 | None:intergenic | 35.0% | |
| TATGGTCTCATATATCATGC+AGG | + | tig0006806:51151-51170 | Msa1344320:intron | 35.0% | |
| GACTATGTAGTTGTATACCA+AGG | - | tig0006806:51266-51285 | None:intergenic | 35.0% | |
| TACATAGTCCTAATGAGACT+TGG | + | tig0006806:51277-51296 | Msa1344320:CDS | 35.0% | |
| TTGCAAATGGAAGTGACTTT+GGG | - | tig0006806:51315-51334 | None:intergenic | 35.0% | |
| TTTGCAAATGGAAGTGACTT+TGG | - | tig0006806:51316-51335 | None:intergenic | 35.0% | |
| TCTTTAGTGCATACATCAGA+TGG | - | tig0006806:51346-51365 | None:intergenic | 35.0% | |
| GTTACTAATCATAACTGTGG+TGG | - | tig0006806:51494-51513 | None:intergenic | 35.0% | |
| CTTGTAAAGGGCTTGAATAA+CGG | - | tig0006806:51534-51553 | None:intergenic | 35.0% | |
| ACTTCTGTAGTCCTTGTAAA+GGG | - | tig0006806:51546-51565 | None:intergenic | 35.0% | |
| TACTTCTGTAGTCCTTGTAA+AGG | - | tig0006806:51547-51566 | None:intergenic | 35.0% | |
| ACCAATCTATAGAAGCAGAA+GGG | + | tig0006806:51689-51708 | Msa1344320:CDS | 35.0% | |
| !! | ATTTTAGTCATAATGGCAGC+AGG | + | tig0006806:51793-51812 | Msa1344320:CDS | 35.0% |
| CAACATAGGAGGGATATTAT+GGG | + | tig0006806:51849-51868 | Msa1344320:CDS | 35.0% | |
| ATATTATGGGTAGGTTATCC+TGG | + | tig0006806:51862-51881 | Msa1344320:CDS | 35.0% | |
| GCCATAGCACAAGTAATATT+TGG | + | tig0006806:51901-51920 | Msa1344320:CDS | 35.0% | |
| ATATTTGGAGACTATAACCC+AGG | + | tig0006806:51916-51935 | Msa1344320:CDS | 35.0% | |
| CGAACTTAACTAAACCAATC+CGG | + | tig0006806:52068-52087 | Msa1344320:intron | 35.0% | |
| CAAATTGAACCAAAGCAAAC+CGG | - | tig0006806:52090-52109 | None:intergenic | 35.0% | |
| !! | CTCTAACATTCGATTTGGTT+TGG | + | tig0006806:52144-52163 | Msa1344320:intron | 35.0% |
| ! | ATTTGAGACCATAAGGTATG+TGG | - | tig0006806:52350-52369 | None:intergenic | 35.0% |
| TTGTGGATACCATGTAAATG+GGG | - | tig0006806:52523-52542 | None:intergenic | 35.0% | |
| GATTGTGGATACCATGTAAA+TGG | - | tig0006806:52525-52544 | None:intergenic | 35.0% | |
| ACTTGATCGACATATGATTG+TGG | - | tig0006806:52540-52559 | None:intergenic | 35.0% | |
| AAAACCTGTATGTTCTTCCA+GGG | - | tig0006806:52608-52627 | None:intergenic | 35.0% | |
| TAAAACCTGTATGTTCTTCC+AGG | - | tig0006806:52609-52628 | None:intergenic | 35.0% | |
| TCCATAGCCAAATTCATAGA+GGG | - | tig0006806:52643-52662 | None:intergenic | 35.0% | |
| ATCCATAGCCAAATTCATAG+AGG | - | tig0006806:52644-52663 | None:intergenic | 35.0% | |
| ! | TTGACATTTTCGCTTGTGAT+TGG | + | tig0006806:52807-52826 | Msa1344320:CDS | 35.0% |
| ! | AAGAACAATGGACCTTTTGA+TGG | + | tig0006806:52834-52853 | Msa1344320:CDS | 35.0% |
| !! | TCATGTGGTGTTAGTGTTTT+TGG | + | tig0006806:52860-52879 | Msa1344320:CDS | 35.0% |
| ! | AAAGAGCACAAGTTAAGGTT+GGG | + | tig0006806:52940-52959 | Msa1344320:CDS | 35.0% |
| TAGTGATGGTAAACGAAAGT+TGG | + | tig0006806:53019-53038 | Msa1344320:CDS | 35.0% | |
| TACATGATAACAGTAGCTAG+TGG | - | tig0006806:53198-53217 | None:intergenic | 35.0% | |
| ATGGTGGTAACATTACTATG+TGG | + | tig0006806:53253-53272 | Msa1344320:three_prime_UTR | 35.0% | |
| ! | CATTACTATGTGGTAGTGTA+AGG | + | tig0006806:53263-53282 | Msa1344320:three_prime_UTR | 35.0% |
| ATCAGTTACAGCCTTACATA+GGG | - | tig0006806:53290-53309 | None:intergenic | 35.0% | |
| AATCAGTTACAGCCTTACAT+AGG | - | tig0006806:53291-53310 | None:intergenic | 35.0% | |
| ATCTTATGAAACCAGAGCCA+AGG | + | tig0006806:49629-49648 | Msa1344320:CDS | 40.0% | |
| CAACTAGTAAACCCTTCTAC+CGG | + | tig0006806:49690-49709 | Msa1344320:CDS | 40.0% | |
| ! | TTGGTGTTCCTGCTTATGAA+TGG | + | tig0006806:49724-49743 | Msa1344320:CDS | 40.0% |
| CTTCATGGTGTCTCAAATGT+AGG | + | tig0006806:49759-49778 | Msa1344320:CDS | 40.0% | |
| AGCTAGAGCTATGTACAATG+TGG | + | tig0006806:49902-49921 | Msa1344320:CDS | 40.0% | |
| ATGTACAATGTGGATTTGGC+TGG | + | tig0006806:49912-49931 | Msa1344320:CDS | 40.0% | |
| ! | TGAATGTTTTTCGCGATCCA+AGG | + | tig0006806:49958-49977 | Msa1344320:CDS | 40.0% |
| !! | TCGGTTCCATTTTGATGCTA+AGG | + | tig0006806:50163-50182 | Msa1344320:CDS | 40.0% |
| AACACACAGCTCTTAAATGG+AGG | - | tig0006806:50392-50411 | None:intergenic | 40.0% | |
| TCCATTTAAGAGCTGTGTGT+TGG | + | tig0006806:50391-50410 | Msa1344320:intron | 40.0% | |
| TCCAACACACAGCTCTTAAA+TGG | - | tig0006806:50395-50414 | None:intergenic | 40.0% | |
| ATTTAAGAGCTGTGTGTTGG+AGG | + | tig0006806:50394-50413 | Msa1344320:intron | 40.0% | |
| TTTAAGAGCTGTGTGTTGGA+GGG | + | tig0006806:50395-50414 | Msa1344320:intron | 40.0% | |
| TGTTTCAGACTGTGATTCAG+TGG | + | tig0006806:50971-50990 | Msa1344320:intron | 40.0% | |
| GCAGGTTTAAACATGAACTG+CGG | + | tig0006806:51169-51188 | Msa1344320:intron | 40.0% | |
| ATCTATTGTAGACCAAGCCT+TGG | + | tig0006806:51246-51265 | Msa1344320:CDS | 40.0% | |
| TGTAGTTGTATACCAAGGCT+TGG | - | tig0006806:51261-51280 | None:intergenic | 40.0% | |
| CAAAGAAGCCAAGTCTCATT+AGG | - | tig0006806:51288-51307 | None:intergenic | 40.0% | |
| TCACTTCCATTTGCAAACCT+TGG | + | tig0006806:51319-51338 | Msa1344320:CDS | 40.0% | |
| CGTTATTCAAGCCCTTTACA+AGG | + | tig0006806:51532-51551 | Msa1344320:CDS | 40.0% | |
| GACCAATCTATAGAAGCAGA+AGG | + | tig0006806:51688-51707 | Msa1344320:CDS | 40.0% | |
| ! | AGAGTTAACTTGACATTGCC+TGG | + | tig0006806:51718-51737 | Msa1344320:CDS | 40.0% |
| ACAAGCTTCTCTTGAAATCC+AGG | - | tig0006806:51739-51758 | None:intergenic | 40.0% | |
| AGAGAAGCTTGTGAAAGATG+CGG | + | tig0006806:51747-51766 | Msa1344320:CDS | 40.0% | |
| GCAACATAGGAGGGATATTA+TGG | + | tig0006806:51848-51867 | Msa1344320:CDS | 40.0% | |
| ATAGGAGGGATATTATGGGT+AGG | + | tig0006806:51853-51872 | Msa1344320:CDS | 40.0% | |
| ! | TAAACCAATCCGGTTTGCTT+TGG | + | tig0006806:52078-52097 | Msa1344320:intron | 40.0% |
| AATGTTTGCACTGCATCCTT+TGG | + | tig0006806:52462-52481 | Msa1344320:intron | 40.0% | |
| CTCATGTTCATGTCTGTCAT+TGG | - | tig0006806:52564-52583 | None:intergenic | 40.0% | |
| ATTTCCCTGGAAGAACATAC+AGG | + | tig0006806:52601-52620 | Msa1344320:CDS | 40.0% | |
| GGGAAATCCCTCTATGAATT+TGG | + | tig0006806:52633-52652 | Msa1344320:CDS | 40.0% | |
| TCCCTCTATGAATTTGGCTA+TGG | + | tig0006806:52639-52658 | Msa1344320:CDS | 40.0% | |
| GTGATTGGTGTGAAGAACAA+TGG | + | tig0006806:52822-52841 | Msa1344320:CDS | 40.0% | |
| !! | ACCTTTTGATGGATCTCATG+TGG | + | tig0006806:52845-52864 | Msa1344320:CDS | 40.0% |
| ACCACATGAGATCCATCAAA+AGG | - | tig0006806:52849-52868 | None:intergenic | 40.0% | |
| ! | GAAAGAGCACAAGTTAAGGT+TGG | + | tig0006806:52939-52958 | Msa1344320:CDS | 40.0% |
| !! | GGTAAACGAAAGTTGGTGAT+TGG | + | tig0006806:53026-53045 | Msa1344320:CDS | 40.0% |
| TAAGCGTGACACTAAGTCCT+TGG | - | tig0006806:49649-49668 | None:intergenic | 45.0% | |
| AACACCAAGCCTTGAAATGC+CGG | - | tig0006806:49712-49731 | None:intergenic | 45.0% | |
| GTGTTCCTGCTTATGAATGG+TGG | + | tig0006806:49727-49746 | Msa1344320:CDS | 45.0% | |
| TCTGACCACCATTCATAAGC+AGG | - | tig0006806:49735-49754 | None:intergenic | 45.0% | |
| TGCTTATGAATGGTGGTCAG+AGG | + | tig0006806:49734-49753 | Msa1344320:CDS | 45.0% | |
| GTGTCTCAAATGTAGGACCA+GGG | + | tig0006806:49766-49785 | Msa1344320:CDS | 45.0% | |
| ! | ATGTTTTTCGCGATCCAAGG+TGG | + | tig0006806:49961-49980 | Msa1344320:CDS | 45.0% |
| ! | TGTTTTTCGCGATCCAAGGT+GGG | + | tig0006806:49962-49981 | Msa1344320:CDS | 45.0% |
| ! | GTTCGTGGACTACAAGAAGT+TGG | + | tig0006806:50047-50066 | Msa1344320:CDS | 45.0% |
| ATTACACCTTGGAGAAGGTC+TGG | - | tig0006806:50482-50501 | None:intergenic | 45.0% | |
| CTCTGATTACACCTTGGAGA+AGG | - | tig0006806:50487-50506 | None:intergenic | 45.0% | |
| CTTCTCCAAGGTGTAATCAG+AGG | + | tig0006806:50485-50504 | Msa1344320:intron | 45.0% | |
| AAAGACTCCTGAAGATGCAG+TGG | + | tig0006806:51022-51041 | Msa1344320:CDS | 45.0% | |
| GATGGTCCAAGGTTTGCAAA+TGG | - | tig0006806:51328-51347 | None:intergenic | 45.0% | |
| TGCATACATCAGATGGTCCA+AGG | - | tig0006806:51339-51358 | None:intergenic | 45.0% | |
| ACTGTGGTGGCATTTGCATT+CGG | - | tig0006806:51481-51500 | None:intergenic | 45.0% | |
| TGAATAACGGCATGGTATGC+CGG | - | tig0006806:51521-51540 | None:intergenic | 45.0% | |
| AAAGGGCTTGAATAACGGCA+TGG | - | tig0006806:51529-51548 | None:intergenic | 45.0% | |
| CCTTAACTGCTGCAGCAAAA+AGG | - | tig0006806:51627-51646 | None:intergenic | 45.0% | |
| ! | CCTTTTTGCTGCAGCAGTTA+AGG | + | tig0006806:51624-51643 | Msa1344320:CDS | 45.0% |
| !! | AGTGGTGTTGGTTGTTGGAT+TGG | + | tig0006806:51666-51685 | Msa1344320:CDS | 45.0% |
| GCCCTTCTGCTTCTATAGAT+TGG | - | tig0006806:51693-51712 | None:intergenic | 45.0% | |
| ATCTATAGAAGCAGAAGGGC+TGG | + | tig0006806:51693-51712 | Msa1344320:CDS | 45.0% | |
| GTAGGTTATCCTGGTCAAGA+TGG | + | tig0006806:51871-51890 | Msa1344320:CDS | 45.0% | |
| TGAACCAAAGCAAACCGGAT+TGG | - | tig0006806:52085-52104 | None:intergenic | 45.0% | |
| ! | AACGAACCTTCATACCGGTT+CGG | + | tig0006806:52305-52324 | Msa1344320:intron | 45.0% |
| ! | TATTTGAGACTTGAGACCGG+AGG | + | tig0006806:52436-52455 | Msa1344320:intron | 45.0% |
| CAGTGCAAACATTACTCCTC+CGG | - | tig0006806:52455-52474 | None:intergenic | 45.0% | |
| TGCTATGTGGGTAGAGAATG+TGG | - | tig0006806:52676-52695 | None:intergenic | 45.0% | |
| AGAAGGAGCAGATGCTATGT+GGG | - | tig0006806:52688-52707 | None:intergenic | 45.0% | |
| TAGAAGGAGCAGATGCTATG+TGG | - | tig0006806:52689-52708 | None:intergenic | 45.0% | |
| GATTGGACAGCACACTATTC+TGG | + | tig0006806:53043-53062 | Msa1344320:CDS | 45.0% | |
| TAGTGTAAGGGCCCTATGTA+AGG | + | tig0006806:53276-53295 | Msa1344320:three_prime_UTR | 45.0% | |
| TGACACTAAGTCCTTGGCTC+TGG | - | tig0006806:49643-49662 | None:intergenic | 50.0% | |
| ACCCTTCTACCGGCATTTCA+AGG | + | tig0006806:49700-49719 | Msa1344320:CDS | 50.0% | |
| GCCTTGAAATGCCGGTAGAA+GGG | - | tig0006806:49704-49723 | None:intergenic | 50.0% | |
| AGCCTTGAAATGCCGGTAGA+AGG | - | tig0006806:49705-49724 | None:intergenic | 50.0% | |
| TCTACCGGCATTTCAAGGCT+TGG | + | tig0006806:49705-49724 | Msa1344320:CDS | 50.0% | |
| GGTGTCTCAAATGTAGGACC+AGG | + | tig0006806:49765-49784 | Msa1344320:CDS | 50.0% | |
| GCAGCTGATAGTATCACTGC+TGG | - | tig0006806:49831-49850 | None:intergenic | 50.0% | |
| ! | GTTTTTCGCGATCCAAGGTG+GGG | + | tig0006806:49963-49982 | Msa1344320:CDS | 50.0% |
| ! | TTTTTCGCGATCCAAGGTGG+GGG | + | tig0006806:49964-49983 | Msa1344320:CDS | 50.0% |
| AACTCCAGGGGAAGATCCTT+TGG | + | tig0006806:49998-50017 | Msa1344320:CDS | 50.0% | |
| ACAACCAAAGGATCTTCCCC+TGG | - | tig0006806:50005-50024 | None:intergenic | 50.0% | |
| GCAGGTGACAAAGCAAGACT+TGG | + | tig0006806:50352-50371 | Msa1344320:intron | 50.0% | |
| GGTGACAAAGCAAGACTTGG+AGG | + | tig0006806:50355-50374 | Msa1344320:intron | 50.0% | |
| AGGTCTGGATCAGCACATGT+AGG | - | tig0006806:50467-50486 | None:intergenic | 50.0% | |
| ! | ACTGGCCTCTGATTACACCT+TGG | - | tig0006806:50493-50512 | None:intergenic | 50.0% |
| AAGGTGTAATCAGAGGCCAG+TGG | + | tig0006806:50492-50511 | Msa1344320:intron | 50.0% | |
| AGGTGTAATCAGAGGCCAGT+GGG | + | tig0006806:50493-50512 | Msa1344320:intron | 50.0% | |
| !! | GATGCAGTGGTGTTGGTTGT+TGG | + | tig0006806:51661-51680 | Msa1344320:CDS | 50.0% |
| GGTTATCCTGGTCAAGATGG+AGG | + | tig0006806:51874-51893 | Msa1344320:CDS | 50.0% | |
| GCATTTCCTCCATCTTGACC+AGG | - | tig0006806:51883-51902 | None:intergenic | 50.0% | |
| GTAGTTCGGAACCACAGAAC+CGG | + | tig0006806:52280-52299 | Msa1344320:intron | 50.0% | |
| CGGTATGAAGGTTCGTTCAC+CGG | - | tig0006806:52302-52321 | None:intergenic | 50.0% | |
| CGGTGAACGAACCTTCATAC+CGG | + | tig0006806:52300-52319 | Msa1344320:intron | 50.0% | |
| !! | ACGAACCTTCATACCGGTTC+GGG | + | tig0006806:52306-52325 | Msa1344320:intron | 50.0% |
| TTATTACCGTCGTCCCGAAC+CGG | - | tig0006806:52322-52341 | None:intergenic | 50.0% | |
| GTGGTAGGTCCCCATTTACA+TGG | + | tig0006806:52511-52530 | Msa1344320:CDS | 50.0% | |
| CTCACCACTTCTGAACTTGG+TGG | - | tig0006806:52888-52907 | None:intergenic | 50.0% | |
| CCACTCACCACTTCTGAACT+TGG | - | tig0006806:52891-52910 | None:intergenic | 50.0% | |
| CCAAGTTCAGAAGTGGTGAG+TGG | + | tig0006806:52888-52907 | Msa1344320:CDS | 50.0% | |
| GGACAGCACACTATTCTGGT+TGG | + | tig0006806:53047-53066 | Msa1344320:CDS | 50.0% | |
| ! | GTTTCTGGAGGTGATGAGCA+TGG | + | tig0006806:53234-53253 | Msa1344320:three_prime_UTR | 50.0% |
| !! | TGGTGGTCAGAGGCACTTCA+TGG | + | tig0006806:49744-49763 | Msa1344320:CDS | 55.0% |
| GCTGGAAAGCTAGTAGCACC+TGG | - | tig0006806:49813-49832 | None:intergenic | 55.0% | |
| GGCGTGGACAAGAAACTCCA+GGG | + | tig0006806:49985-50004 | Msa1344320:CDS | 55.0% | |
| GCGTGGACAAGAAACTCCAG+GGG | + | tig0006806:49986-50005 | Msa1344320:CDS | 55.0% | |
| GCTGATCCAGACCTTCTCCA+AGG | + | tig0006806:50473-50492 | Msa1344320:CDS | 55.0% | |
| GGTGTAATCAGAGGCCAGTG+GGG | + | tig0006806:50494-50513 | Msa1344320:intron | 55.0% | |
| CAAACCCATCTAGACCCCAC+TGG | - | tig0006806:50511-50530 | None:intergenic | 55.0% | |
| GCAAGAGCCACTGCATCTTC+AGG | - | tig0006806:51032-51051 | None:intergenic | 55.0% | |
| GTGGCTCTTGCACTGAAAGC+AGG | + | tig0006806:51041-51060 | Msa1344320:CDS | 55.0% | |
| !! | GCTCTAGAAGCTGCGAAGCA+AGG | + | tig0006806:51379-51398 | Msa1344320:CDS | 55.0% |
| TCTTCGGTAACTTACGCGCG+TGG | + | tig0006806:51571-51590 | Msa1344320:CDS | 55.0% | |
| CAACACCACTGCATCAGCAG+AGG | - | tig0006806:51656-51675 | None:intergenic | 55.0% | |
| CTCTGCTGATGCAGTGGTGT+TGG | + | tig0006806:51654-51673 | Msa1344320:CDS | 55.0% | |
| GATGCGGCTTCTGCTACCAA+AGG | + | tig0006806:51763-51782 | Msa1344320:CDS | 55.0% | |
| !! | AGGTTCGTTCACCGGTTCTG+TGG | - | tig0006806:52294-52313 | None:intergenic | 55.0% |
| !! | TTCATACCGGTTCGGGACGA+CGG | + | tig0006806:52313-52332 | Msa1344320:intron | 55.0% |
| GGAGCCACCAAGTTCAGAAG+TGG | + | tig0006806:52881-52900 | Msa1344320:CDS | 55.0% | |
| TCTGGAGGTGATGAGCATGG+TGG | + | tig0006806:53237-53256 | Msa1344320:three_prime_UTR | 55.0% | |
| AGGGACGCGTTTCGACAGCA+GGG | + | tig0006806:49785-49804 | Msa1344320:CDS | 60.0% | |
| ! | CGTTTCGACAGCAGGGTACC+AGG | + | tig0006806:49792-49811 | Msa1344320:CDS | 60.0% |
| GGGCGTGGACAAGAAACTCC+AGG | + | tig0006806:49984-50003 | Msa1344320:CDS | 60.0% | |
| AGAGGCCAGTGGGGTCTAGA+TGG | + | tig0006806:50503-50522 | Msa1344320:intron | 60.0% | |
| GAGGCCAGTGGGGTCTAGAT+GGG | + | tig0006806:50504-50523 | Msa1344320:intron | 60.0% | |
| TGCAGCCTCTGCTGATGCAG+TGG | + | tig0006806:51648-51667 | Msa1344320:CDS | 60.0% | |
| GTCGTCCCGAACCGGTATGA+AGG | - | tig0006806:52314-52333 | None:intergenic | 60.0% | |
| CTGCTGTCGAAACGCGTCCC+TGG | - | tig0006806:49786-49805 | None:intergenic | 65.0% | |
| CAGGGACGCGTTTCGACAGC+AGG | + | tig0006806:49784-49803 | Msa1344320:CDS | 65.0% | |
| TCTTGTCCACGCCCCCACCT+TGG | - | tig0006806:49978-49997 | None:intergenic | 65.0% | |
| CGCGATCCAAGGTGGGGGCG+TGG | + | tig0006806:49969-49988 | Msa1344320:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006806 | gene | 49464 | 53367 | 49464 | ID=Msa1344320;Name=Msa1344320 |
| tig0006806 | mRNA | 49464 | 53367 | 49464 | ID=Msa1344320-mRNA-1;Parent=Msa1344320;Name=Msa1344320-mRNA-1;_AED=0.03;_eAED=0.03;_QI=37|0.5|0.6|1|1|1|5|228|746 |
| tig0006806 | exon | 49464 | 50184 | 49464 | ID=Msa1344320-mRNA-1:exon:4441;Parent=Msa1344320-mRNA-1 |
| tig0006806 | exon | 50416 | 50494 | 50416 | ID=Msa1344320-mRNA-1:exon:4442;Parent=Msa1344320-mRNA-1 |
| tig0006806 | exon | 50979 | 51062 | 50979 | ID=Msa1344320-mRNA-1:exon:4443;Parent=Msa1344320-mRNA-1 |
| tig0006806 | exon | 51173 | 51937 | 51173 | ID=Msa1344320-mRNA-1:exon:4444;Parent=Msa1344320-mRNA-1 |
| tig0006806 | exon | 52511 | 53367 | 52511 | ID=Msa1344320-mRNA-1:exon:4445;Parent=Msa1344320-mRNA-1 |
| tig0006806 | five_prime_UTR | 49464 | 49500 | 49464 | ID=Msa1344320-mRNA-1:five_prime_utr;Parent=Msa1344320-mRNA-1 |
| tig0006806 | CDS | 49501 | 50184 | 49501 | ID=Msa1344320-mRNA-1:cds;Parent=Msa1344320-mRNA-1 |
| tig0006806 | CDS | 50416 | 50494 | 50416 | ID=Msa1344320-mRNA-1:cds;Parent=Msa1344320-mRNA-1 |
| tig0006806 | CDS | 50979 | 51062 | 50979 | ID=Msa1344320-mRNA-1:cds;Parent=Msa1344320-mRNA-1 |
| tig0006806 | CDS | 51173 | 51937 | 51173 | ID=Msa1344320-mRNA-1:cds;Parent=Msa1344320-mRNA-1 |
| tig0006806 | CDS | 52511 | 53139 | 52511 | ID=Msa1344320-mRNA-1:cds;Parent=Msa1344320-mRNA-1 |
| tig0006806 | three_prime_UTR | 53140 | 53367 | 53140 | ID=Msa1344320-mRNA-1:three_prime_utr;Parent=Msa1344320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
